Psyllid ID: psy10338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGHYQ
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccEEEEccEEEEEEccccccccccccEEEEEEcccEEEEcccEEEEEccccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEHHHcHHcEccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHccccccEEEEccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHcEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccEEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mdtfdktrppvaaGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIipvaaehdrtgeypwgiVKKAHElglinghipaseqnmgqrasdtrgitfedvrvpkenvllgegagfkiamdtfdktrppvaaGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSgglelsvfdGCLVAEELAYGCTGIMTAleasglgaycvtepgagsdvngvktkavkkgdewilNGQKMWItnggvanwqnrtrdfryekpghyq
Flexible Loop (DISEMBL)
mdtfdktrppvaagavglaQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVaaehdrtgeypWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPgagsdvngvkTKAVKKGDEWILNGQKMWitnggvanwqnrtrdfryekpghyq
Low Complexity Region (SEG)
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGHYQ
Disordered region (IsUnstruct)
************AGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHI***************GITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF*********
Disordered Region (DISOPRED)
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRT************
Disordered Region (DISEMBL)
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASE********DTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGHYQ
Disordered Region (DISPRO)
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGHYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9VSA3	419	Probable medium-chain spe	yes	N/A	0.346	0.257	0.720	1e-37
P41367	421	Medium-chain specific acy	yes	N/A	0.179	0.133	0.818	7e-34
P08503	421	Medium-chain specific acy	yes	N/A	0.179	0.133	0.784	5e-33
Q3SZB4	421	Medium-chain specific acy	yes	N/A	0.179	0.133	0.784	1e-32
P45952	421	Medium-chain specific acy	yes	N/A	0.179	0.133	0.772	2e-32
P11310	421	Medium-chain specific acy	yes	N/A	0.144	0.106	0.738	2e-30
A5A6I0	421	Medium-chain specific acy	yes	N/A	0.144	0.106	0.727	4e-30
Q22347	417	Probable medium-chain spe	no	N/A	0.387	0.290	0.542	2e-29
A8XNF0	417	Probable medium-chain spe	N/A	N/A	0.387	0.290	0.542	2e-29
Q8HXY8	421	Medium-chain specific acy	N/A	N/A	0.160	0.118	0.715	7e-29

>sp|Q9VSA3|ACADM_DROME Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 87/111 (78%), Gaps = 3/111 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     E NMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 217 GFIVERDSPGLTPGR---KELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 273

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DKTRPPVAAGAVGLAQRCLDEA KYALERK FGVPIA HQ +   +  ++I
Sbjct: 274 DKTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAI 324

This enzyme is specific for acyl chain lengths of 4 to 16.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 3

>sp|P41367|ACADM_PIG Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 74/88 (84%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TFDKTRPPVAAGAVGL
Sbjct: 232 QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +A HQG+
Sbjct: 292 AQRALDEATKYALERKTFGKLLAEHQGI 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P08503|ACADM_RAT Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 74/88 (84%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
           HI   E NMGQR SDTRGITFEDVRVPKENVL+GEGAGFKIAM  FD+TRP VAAGAVGL
Sbjct: 232 HIGKKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYAL+RK FG  +  HQG+
Sbjct: 292 AQRALDEATKYALDRKTFGKLLVEHQGV 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q3SZB4|ACADM_BOVIN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 72/88 (81%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDVRVPKENVL+GEGAGFKIAM  FDKTRPPVAA AVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAAAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQG+
Sbjct: 292 AQRALDEATKYALERKTFGKLLIEHQGI 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P45952|ACADM_MOUSE Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 73/88 (82%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
           HI   E NMGQR SDTRGI FEDVRVPKENVL+GEGAGFKIAM  FD+TRP VAAGAVGL
Sbjct: 232 HIGKKELNMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYAL+RK FG  +  HQG+
Sbjct: 292 AQRALDEATKYALDRKTFGKLLVEHQGV 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P11310|ACADM_HUMAN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 71/88 (80%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  FDKTRP VAAGAVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 292 AQRALDEATKYALERKTFGKLLVEHQAI 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|A5A6I0|ACADM_PANTR Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 71/88 (80%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+VP+ENVL+G+GAGFK+AM  FDKTRP VAAGAVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVKVPRENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 292 AQRALDEATKYALERKTFGKLLVEHQAI 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q22347|ACADM_CAEEL Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial OS=Caenorhabditis elegans GN=acdh-10 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 85/129 (65%), Gaps = 8/129 (6%)

Query: 72  VAAEHDRTGEYPWGIVKKAHELGLINGHIPA-----SEQNMGQRASDTRGITFEDVRVPK 126
           V A  D   + P G   KA    +++G  P       E+NMGQR SDTR ITFEDVRVP 
Sbjct: 193 VLARSDPNPKTPAG---KAFTAFIVDGDTPGITRGKKEKNMGQRCSDTRVITFEDVRVPA 249

Query: 127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
           ENVL   GAGFK+AM+ FD TRP VAAGA+GL+ RCLDE+ KYALERKAFG  IA HQ +
Sbjct: 250 ENVLGAPGAGFKVAMEAFDMTRPGVAAGALGLSWRCLDESAKYALERKAFGTVIANHQAV 309

Query: 187 YLKIQYVSI 195
              +  +++
Sbjct: 310 QFMLADMAV 318

This enzyme is specific for acyl chain lengths of 4 to 16.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|A8XNF0|ACAD1_CAEBR Probable medium-chain specific acyl-CoA dehydrogenase 1, mitochondrial OS=Caenorhabditis briggsae GN=CBG15946 PE=3 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 72  VAAEHDRTGEYPWGIVKKAHELGLINGHIPA-----SEQNMGQRASDTRGITFEDVRVPK 126
           V A  D   + P G   KA    +++G  P       E+NMGQR SDTR ITFEDVRVP 
Sbjct: 193 VLARSDSDPKAPAG---KAFTAFIVDGDTPGISRGKKEKNMGQRCSDTRTITFEDVRVPA 249

Query: 127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
           ENVL   GAGFK+AM  FD TRP VAAGA+GLA RCLDE+ KYAL+RKAFG  IA HQ +
Sbjct: 250 ENVLGAPGAGFKVAMGAFDMTRPGVAAGALGLAWRCLDESAKYALQRKAFGTEIANHQAV 309

Query: 187 YLKIQYVSI 195
              +  +++
Sbjct: 310 QFMLADMAV 318

This enzyme is specific for acyl chain lengths of 4 to 16.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q8HXY8|ACADM_MACFA Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 70/88 (79%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+V KENVL+G+GAGFKIAM  FDKTRP V++GAVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVKVLKENVLIGDGAGFKIAMGAFDKTRPTVSSGAVGL 291

Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 292 AQRALDEATKYALERKTFGKLLIEHQAI 319

This enzyme is specific for acyl chain lengths of 4 to 16.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
170043822	422	acyl-coa dehydrogenase [Culex quinquefas	0.378	0.279	0.694	5e-38
312383488	1028	hypothetical protein AND_03389 [Anophele	0.214	0.065	0.774	6e-38
332025636	434	Putative medium-chain specific acyl-CoA	0.657	0.472	0.438	9e-38
253560542	151	putative acyl-CoA dehydrogenase [Culex p	0.346	0.715	0.738	1e-37
58387602	419	AGAP005662-PA [Anopheles gambiae str. PE	0.378	0.281	0.685	2e-37
195126441	420	GI12250 [Drosophila mojavensis] gi|19391	0.208	0.154	0.836	1e-36
195442770	420	GK23895 [Drosophila willistoni] gi|19416	0.346	0.257	0.720	2e-36
195019873	419	GH14704 [Drosophila grimshawi] gi|193898	0.208	0.155	0.826	2e-36
195378841	420	GJ11482 [Drosophila virilis] gi|19540419	0.346	0.257	0.729	4e-36
195325801	419	GM24997 [Drosophila sechellia] gi|194118	0.346	0.257	0.720	6e-36

>gi|170043822|ref|XP_001849570.1| acyl-coa dehydrogenase [Culex quinquefasciatus] gi|167867122|gb|EDS30505.1| acyl-coa dehydrogenase [Culex quinquefasciatus]

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 94/121 (77%), Gaps = 3/121 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 220 GFIVERETPGLTPGR---KEQNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 276

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
           DKTRPPVAAGAVGLAQRCLDEA KYALERKAFGVPIAAHQ +   +  ++I     +L+ 
Sbjct: 277 DKTRPPVAAGAVGLAQRCLDEAMKYALERKAFGVPIAAHQAVSFMLADMAIGVETARLIT 336

Query: 205 L 205
           +
Sbjct: 337 M 337

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383488|gb|EFR28556.1| hypothetical protein AND_03389 [Anopheles darlingi]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 87/102 (85%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TFDKTRPPVAAGAVGLAQRCL
Sbjct: 235 EQNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCL 294

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
           DEA KYALERK FGVPIAAHQ +   +  ++I     +L+ +
Sbjct: 295 DEALKYALERKTFGVPIAAHQAVSFMLADMAIGVETARLITM 336

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025636|gb|EGI65798.1| Putative medium-chain specific acyl-CoA dehydrogenase, mitochondrial [Acromyrmex echinatior]

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 137/244 (56%), Gaps = 39/244 (15%)

Query: 57  FQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRG 116
            Q LARKF +EEIIPVAAE+DRTG+YPW I+KKA  +GL+N HIP     M     D+  
Sbjct: 1   MQELARKFTKEEIIPVAAEYDRTGKYPWDIIKKAWSIGLLNKHIPQHCGGMEANIFDSCL 60

Query: 117 ITFEDVRVPKENVLLGEG-AGFKIAMDTFDKTRPPVAAGAVGLA--QRCLDE-ATKYALE 172
           IT E          L  G  G   A++T         +  V L+  Q+ + E A K+  E
Sbjct: 61  ITEE----------LAYGCTGIITAIET--------TSLGVKLSDTQKEMQELARKFTKE 102

Query: 173 RKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVA 232
                +P+AA      K  +  I ++   + LL  H     +    GG+E ++FD CL+ 
Sbjct: 103 EI---IPVAAEYDRTGKYPW-DIIKKAWSIGLLNKH-----IPQHCGGMEANIFDSCLIT 153

Query: 233 EELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
           EELAYGCTGI+TA+E + LG          SDV G+KTKA KKG EWI+NG KMWITNGG
Sbjct: 154 EELAYGCTGIITAIETTSLGVR--------SDVAGIKTKAEKKGKEWIINGTKMWITNGG 205

Query: 293 VANW 296
           VANW
Sbjct: 206 VANW 209

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|253560542|gb|ACT32982.1| putative acyl-CoA dehydrogenase [Culex pipiens pipiens]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 89/111 (80%), Gaps = 3/111 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 4   GFIVERETPGLTPGR---KEQNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 60

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DKTRPPVAAGAVGLAQRCLDEA KYALERK FGVPIAAHQ +   +  ++I
Sbjct: 61  DKTRPPVAAGAVGLAQRCLDEAMKYALERKTFGVPIAAHQAVSFMLADMAI 111

Source: Culex pipiens pipiens

Species: Culex pipiens

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58387602|ref|XP_315683.2| AGAP005662-PA [Anopheles gambiae str. PEST] gi|55238468|gb|EAA11811.3| AGAP005662-PA [Anopheles gambiae str. PEST]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 94/121 (77%), Gaps = 3/121 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 217 GFIVERDTPGLTPGR---KEQNMGQRASDTRGITFEDVRVPKENVLVGEGAGFKIAMGTF 273

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
           DKTRPPVAAGAVGLAQRCLDEA KY+LERKAFGVPIAAHQ +   +  ++I     +L+ 
Sbjct: 274 DKTRPPVAAGAVGLAQRCLDEALKYSLERKAFGVPIAAHQAVSFMLADMAIGVETARLIT 333

Query: 205 L 205
           +
Sbjct: 334 M 334

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126441|ref|XP_002007679.1| GI12250 [Drosophila mojavensis] gi|193919288|gb|EDW18155.1| GI12250 [Drosophila mojavensis]

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TFDKTRPPVAAGAVGLAQRCL
Sbjct: 232 EQNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCL 291

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DEA KYALERK FGVPIA HQ +   +  ++I
Sbjct: 292 DEALKYALERKTFGVPIAHHQAVQFMLADMAI 323

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442770|ref|XP_002069119.1| GK23895 [Drosophila willistoni] gi|194165204|gb|EDW80105.1| GK23895 [Drosophila willistoni]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 88/111 (79%), Gaps = 3/111 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 216 GFIVERDSPGLTPGR---KEQNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 272

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DKTRPPVAAGAVGLAQRCLDEA KY+LERK FGVPIA HQ +   +  ++I
Sbjct: 273 DKTRPPVAAGAVGLAQRCLDEALKYSLERKTFGVPIAYHQAVQFMLADMAI 323

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195019873|ref|XP_001985073.1| GH14704 [Drosophila grimshawi] gi|193898555|gb|EDV97421.1| GH14704 [Drosophila grimshawi]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           EQNMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TFDKTRPPVAAGAVGLAQRC+
Sbjct: 232 EQNMGQRASDTRGITFEDVRVPKENVLVGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCM 291

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DEA KYALERK FGVPIA HQ +   +  ++I
Sbjct: 292 DEALKYALERKTFGVPIAHHQAVQFMLADMAI 323

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378841|ref|XP_002048190.1| GJ11482 [Drosophila virilis] gi|195404194|ref|XP_002060435.1| GJ19560 [Drosophila virilis] gi|194140953|gb|EDW57380.1| GJ19560 [Drosophila virilis] gi|194155348|gb|EDW70532.1| GJ11482 [Drosophila virilis]

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 88/111 (79%), Gaps = 3/111 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     E NMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 216 GFIVERDTPGLTPGR---KELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 272

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DKTRPPVAAGAVGLAQRCLDEA KYALERKAFGVPIA HQ +   +  ++I
Sbjct: 273 DKTRPPVAAGAVGLAQRCLDEALKYALERKAFGVPIAHHQAVQFMLADMAI 323

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195325801|ref|XP_002029619.1| GM24997 [Drosophila sechellia] gi|194118562|gb|EDW40605.1| GM24997 [Drosophila sechellia]

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 87/111 (78%), Gaps = 3/111 (2%)

Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + +    GL  G     E NMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct: 217 GFIVERDSPGLTPGR---KELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 273

Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
           DKTRPPVAAGAVGLAQRCLDEA KYALERK FGVPIA HQ +   +  ++I
Sbjct: 274 DKTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAI 324

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
FB|FBgn0035811	419	CG12262 [Drosophila melanogast	0.346	0.257	0.720	5.7e-36
UNIPROTKB|Q5T4U5	454	ACADM "Medium-chain-specific a	0.317	0.218	0.666	4.9e-30
WB|WBGene00020812	412	acdh-7 [Caenorhabditis elegans	0.317	0.240	0.627	3.2e-41
UNIPROTKB|P41367	421	ACADM "Medium-chain specific a	0.317	0.235	0.735	8.5e-33
UNIPROTKB|F1P6W6	421	ACADM "Uncharacterized protein	0.317	0.235	0.696	1.6e-31
TIGR_CMR|CHY_1732	380	CHY_1732 "acyl-CoA dehydrogena	0.262	0.215	0.595	3e-33
ZFIN|ZDB-GENE-040426-1945	426	acadm "acyl-Coenzyme A dehydro	0.266	0.194	0.795	1.8e-30
UNIPROTKB|B7Z9I1	385	ACADM "Medium-chain-specific a	0.317	0.257	0.666	4.9e-30
UNIPROTKB|P11310	421	ACADM "Medium-chain specific a	0.317	0.235	0.666	4.9e-30
RGD|2012	421	Acadm "acyl-CoA dehydrogenase,	0.317	0.235	0.705	2.9e-32

FB|FBgn0035811 CG12262 [Drosophila melanogaster (taxid:7227)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 80/111 (72%), Positives = 87/111 (78%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +    GL  G     E NMGQRASDTRGITFEDVRVPKENVL+GEGAGFKIAM TF
Sbjct:   217 GFIVERDSPGLTPGR---KELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTF 273

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
             DKTRPPVAAGAVGLAQRCLDEA KYALERK FGVPIA HQ +   +  ++I
Sbjct:   274 DKTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAI 324

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q5T4U5 ACADM "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 68/102 (66%), Positives = 77/102 (75%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+    I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  F
Sbjct:   254 GFIVEADTPGI---QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAF 310

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             DKTRP VAAGAVGLAQR LDEATKYALERK FG  +  HQ +
Sbjct:   311 DKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAI 352

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

WB|WBGene00020812 acdh-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 301 (111.0 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 64/102 (62%), Positives = 73/102 (71%)

Query:    94 GLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAA 153
             GL  G     E NMGQR SDTRGITFEDVRVP  NV+   G GFK+AM TFDKTRP VAA
Sbjct:   217 GLTRGR---KEINMGQRCSDTRGITFEDVRVPAANVVGAPGEGFKVAMKTFDKTRPTVAA 273

Query:   154 GAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195
              A G+A RCLD AT+Y+LERKAFG  IA HQG+   +  ++I
Sbjct:   274 LATGVAYRCLDVATQYSLERKAFGTQIANHQGVSFLLAEMAI 315

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|P41367 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 75/102 (73%), Positives = 80/102 (78%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+    I   E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TF
Sbjct:   221 GFIVEADTPGV---QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTF 277

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             DKTRPPVAAGAVGLAQR LDEATKYALERK FG  +A HQG+
Sbjct:   278 DKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGI 319

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA

GO:0045329 "carnitine biosynthetic process" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0006111 "regulation of gluconeogenesis" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1P6W6 ACADM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 71/102 (69%), Positives = 78/102 (76%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+    I   E NMGQR SDTRGI FEDV+VPKENVL+GEGAGFKIAM  F
Sbjct:   221 GFIVEADTPGV---QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGEGAGFKIAMGAF 277

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             DKTRPPVAAGAVGL QR LDEATKYALERK FG  +  HQG+
Sbjct:   278 DKTRPPVAAGAVGLGQRALDEATKYALERKTFGKLLVEHQGI 319

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

TIGR_CMR|CHY_1732 CHY_1732 "acyl-CoA dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 235 (87.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 50/84 (59%), Positives = 61/84 (72%)

Query:   104 EQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
             E+ MG RAS    +  E+VR+P+ENVL GE G+GFKIAM T D+TRP + A AVG+A+R 
Sbjct:   199 EKKMGDRASHVAEVILENVRIPRENVL-GEVGSGFKIAMQTLDQTRPMIGATAVGVARRA 257

Query:   163 LDEATKYALERKAFGVPIAAHQGM 186
             LDEA KYA ERK FG PIA  Q +
Sbjct:   258 LDEALKYAKERKQFGRPIAEFQAI 281

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

ZFIN|ZDB-GENE-040426-1945 acadm "acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 66/83 (79%), Positives = 71/83 (85%)

Query:   104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
             E NMGQR SDTRGITFEDV +PKENVL+GEGAGFKIAM  FDKTRPPVAAGA GLAQR L
Sbjct:   242 ELNMGQRCSDTRGITFEDVVIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRAL 301

Query:   164 DEATKYALERKAFGVPIAAHQGM 186
             +EATKYA+ERK FG  IA HQ +
Sbjct:   302 EEATKYAMERKTFGKFIAEHQAV 324

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|B7Z9I1 ACADM "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 68/102 (66%), Positives = 77/102 (75%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+    I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  F
Sbjct:   185 GFIVEADTPGI---QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAF 241

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             DKTRP VAAGAVGLAQR LDEATKYALERK FG  +  HQ +
Sbjct:   242 DKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAI 283

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P11310 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 68/102 (66%), Positives = 77/102 (75%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+    I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  F
Sbjct:   221 GFIVEADTPGI---QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAF 277

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             DKTRP VAAGAVGLAQR LDEATKYALERK FG  +  HQ +
Sbjct:   278 DKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAI 319

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0006111 "regulation of gluconeogenesis" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IMP;TAS

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IDA;IMP;TAS

GO:0030424 "axon" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IMP;IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IDA

GO:0051793 "medium-chain fatty acid catabolic process" evidence=IDA

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0045329 "carnitine biosynthetic process" evidence=IMP

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IMP

RGD|2012 Acadm "acyl-CoA dehydrogenase, C-4 to C-12 straight chain" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 72/102 (70%), Positives = 80/102 (78%)

Query:    85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
             G + +A   G+   HI   E NMGQR SDTRGITFEDVRVPKENVL+GEGAGFKIAM  F
Sbjct:   221 GFIVEADTPGI---HIGKKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAF 277

Query:   145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
             D+TRP VAAGAVGLAQR LDEATKYAL+RK FG  +  HQG+
Sbjct:   278 DRTRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGV 319

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0001889 "liver development" evidence=IEA;ISO

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA;TAS

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0006082 "organic acid metabolic process" evidence=ISO

GO:0006111 "regulation of gluconeogenesis" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;ISS;TAS

GO:0007507 "heart development" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0009409 "response to cold" evidence=IEA;ISO

GO:0009437 "carnitine metabolic process" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0016853 "isomerase activity" evidence=IDA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA;ISO

GO:0030424 "axon" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO;IDA

GO:0042493 "response to drug" evidence=IEP

GO:0042594 "response to starvation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=ISO;IDA

GO:0045329 "carnitine biosynthetic process" evidence=IEA;ISO

GO:0046688 "response to copper ion" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA;ISO

GO:0051793 "medium-chain fatty acid catabolic process" evidence=ISO;IDA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	312
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	4e-49
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	9e-39
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	9e-29
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	9e-28
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	2e-25
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	2e-23
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	1e-20
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	2e-19
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	6e-19
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	2e-18
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	5e-18
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	1e-16
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	2e-16
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	5e-16
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	1e-14
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	6e-14
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	1e-13
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-13
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	3e-13
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	6e-13
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	7e-13
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	1e-12
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	3e-12
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	3e-12
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	4e-12
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	2e-11
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	2e-11
PLN02876	822	PLN02876, PLN02876, acyl-CoA dehydrogenase	6e-11
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	8e-11
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	8e-11
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	1e-10
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	6e-10
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	1e-09
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	2e-09
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	2e-09
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	3e-09
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	8e-09
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	1e-08
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	8e-08
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	2e-07
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	4e-07
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	4e-07
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	5e-07
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	1e-06
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	2e-06
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	5e-06
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	8e-06
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	8e-06
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	2e-05
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	3e-05
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-04
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	1e-04
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	1e-04
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	2e-04
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-04
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	3e-04
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	0.001
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	0.002
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	0.002
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	0.002
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	0.002
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	0.003

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  167 bits (424), Expect = 4e-49
 Identities = 71/83 (85%), Positives = 73/83 (87%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E NMGQR SDTRGITFEDVRVPKENVL+GEGAGFKIAM  FDKTRPPVAAGAVGLAQR L
Sbjct: 197 ELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRAL 256

Query: 164 DEATKYALERKAFGVPIAAHQGM 186
           DEATKYALERK FG  IA HQ +
Sbjct: 257 DEATKYALERKTFGKLIAEHQAV 279

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  140 bits (354), Expect = 9e-39
 Identities = 61/105 (58%), Positives = 68/105 (64%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGLG-------------------------- 252
           GGL L  FD CL+ EELAYGCTG+ TA+EA+ LG                          
Sbjct: 56  GGLGLGTFDTCLITEELAYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLM 115

Query: 253 -AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 116 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 160

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  113 bits (284), Expect = 9e-29
 Identities = 54/105 (51%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 86  IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
           IV++    GL  G     E  +G R S T  + FEDVRVPKEN+L  EG GFKIAM T D
Sbjct: 179 IVERDTP-GLSVG---KKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLD 234

Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
             R  +AA A+G+AQ  LD A  YA ERK FG PIA  QG+  K+
Sbjct: 235 GGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKL 279

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  109 bits (275), Expect = 9e-28
 Identities = 38/82 (46%), Positives = 52/82 (63%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
              MG R S T  + F+DVRVP++N+L  EG GF++AM   +  R  +AA A+G A+  L
Sbjct: 150 WDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAAL 209

Query: 164 DEATKYALERKAFGVPIAAHQG 185
           DEA +YA +RK FG P+A  Q 
Sbjct: 210 DEAVEYAKQRKQFGKPLAEFQA 231

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  104 bits (260), Expect = 2e-25
 Identities = 53/122 (43%), Positives = 67/122 (54%), Gaps = 7/122 (5%)

Query: 69  IIPVAAEHDRTGEYPWGI----VKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124
            + V A  D       GI    V K    G+  G I    + MG R S T  + F+DVRV
Sbjct: 172 WLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPI---LKKMGLRGSATGEVFFDDVRV 228

Query: 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 184
           P EN+L  EG GFKIAM+T +  R  +AA A+G+A+  L+EA  YA ERK FG PIA  Q
Sbjct: 229 PAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQ 288

Query: 185 GM 186
            +
Sbjct: 289 LV 290

Length = 393

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 98.4 bits (245), Expect = 2e-23
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 50  LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
           L E Q+EFQ  ARKF REEIIPVAAE+D++GEYPW ++K+A ELGL+N HIP     +G 
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGL 60

Query: 110 RASDTRGITFE 120
              DT  IT E
Sbjct: 61  GTFDTCLITEE 71

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 91.1 bits (226), Expect = 1e-20
 Identities = 37/44 (84%), Positives = 37/44 (84%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M  FDKTRPPVAAGAVGLAQR LDEATKYALERK FG  IA HQ
Sbjct: 234 MGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQ 277

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           MG +A DT  + F+D RVP EN+L  E  GF   M    + R  +AAGA+  A+  L+E 
Sbjct: 196 MGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEET 255

Query: 167 TKYALERKAFGVPIAAHQGMYLKI 190
             Y  +RKAFG  +A  Q +  KI
Sbjct: 256 RNYVKQRKAFGKTLAQLQVVRHKI 279

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score = 85.8 bits (213), Expect = 6e-19
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 28/106 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           GG  L      +  EELA     +   +                           A+G  
Sbjct: 54  GGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEK 113

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           +GA+ ++EPGAGSD   +KT A K GD+++LNG KMWITNGG A++
Sbjct: 114 IGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADF 159

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 35/86 (40%), Positives = 47/86 (54%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G R S+T  + FED  VP+EN+L GE  G  + M   D  R  +A G +G+ Q  LD A
Sbjct: 199 LGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVA 258

Query: 167 TKYALERKAFGVPIAAHQGMYLKIQY 192
             YA +RK FG PI   Q +  K+  
Sbjct: 259 IPYAHQRKQFGQPIGEFQLVQGKLAD 284

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 83.3 bits (206), Expect = 5e-18
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query: 102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQR 161
           A+E+ MG  A  TR + FED RVP EN L GEG GF IAM   +  R  +A+ ++G AQ 
Sbjct: 191 ANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQA 250

Query: 162 CLDEATKYALERKAFGVPIAAHQGMYLKI 190
            LD A  Y  ERK FG P+A  Q +  K+
Sbjct: 251 ALDLARAYLEERKQFGKPLADFQALQFKL 279

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           + A+ +TEPGAGSD+ G++T A K GD ++LNG+K++I+NGG A+ 
Sbjct: 70  IAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADL 115

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 86  IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
           IV+++   G+ NG     E+ MG + S+T  + FEDV++P ENVL   G GFK+AM+  +
Sbjct: 210 IVERSFG-GVTNG---PPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILN 265

Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA 181
             R  + A  +G  +RC+++A  YA  RK FG  I 
Sbjct: 266 NGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIH 301

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 70.6 bits (174), Expect = 5e-16
 Identities = 23/44 (52%), Positives = 33/44 (75%)

Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           A+ +TEPGAGSD+  ++T A + GD W+LNG+K WITN  +A+ 
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADL 44

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G R SDT  + FE+  VP+ENVL  EG G  + M   D  R  +AAG +GL Q CLD  
Sbjct: 225 LGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVV 284

Query: 167 TKYALERKAFGVPIAAHQ-------GMYLKIQ 191
             Y  +R+ FG PI   Q        MY  +Q
Sbjct: 285 LPYVRQREQFGRPIGEFQFIQGKLADMYTSLQ 316

Length = 404

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
           G GF +AM+T +  R  +AA A+GLA+R LDEA +YA +RKAFG P+   Q +
Sbjct: 1   GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLI 53

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 51  NETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            E Q+  +   R+F  EE+ P AAE D  GE+P  + +K  ELGL+   IP
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIP 51

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 32/110 (29%)

Query: 219 GGLELSVFDGCLVAEELAYGCTG--------------IMTALEASG-------------- 250
           GGL LS  +   V EELA    G              +   +   G              
Sbjct: 63  GGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLAS 122

Query: 251 ---LGAYCVTEPGAGSDVNGVK-TKAVKKGDEWILNGQKMWITNGGVANW 296
              +GA+ +TEPGAGSD+  ++ T AV+   +++LNGQK+WI+N  VA+W
Sbjct: 123 GELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADW 172

Length = 393

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 27/104 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGI--------MTA--LEASG-----------------L 251
           GG  LS  D  ++ E L+ GC           M A  +++ G                 L
Sbjct: 56  GGSGLSRLDASIIFEALSTGCVSTAAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKL 115

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
            +YC+TEPG+GSD   ++T+AV++GD ++LNG K +I+  G ++
Sbjct: 116 ASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 68  EIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE 127
           ++  V A +D TG+    I+++  + GL     P  +     RAS T  I  ++V VP+E
Sbjct: 171 DVFVVWARNDETGKIRGFILERGMK-GL---SAPKIQGKFSLRASITGEIVMDNVFVPEE 226

Query: 128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
           N LL    G +      +  R  +A GA+G A+ C   A +Y L+RK FG P+AA Q + 
Sbjct: 227 N-LLPGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQ 285

Query: 188 LKIQYVSIFEREIQLMLLGVH 208
            K+  +     EI L LL   
Sbjct: 286 KKLADMLT---EIALGLLACL 303

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 2/46 (4%)

Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
            SG  +GA  ++EP AGSDV  +K +A KKGD ++LNG KMWITNG
Sbjct: 112 ISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNG 157

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 36/73 (49%), Positives = 44/73 (60%)

Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167
           G RAS    + FEDV VP EN+L  EG G    M   +  R  +AA AVG+A+R ++  T
Sbjct: 231 GMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMT 290

Query: 168 KYALERKAFGVPI 180
            YA ERKAFG PI
Sbjct: 291 SYASERKAFGKPI 303

Length = 410

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
           ASG  + A+ +TEP +GSD   ++T AV    G  ++LNG K+WITNGG+A+
Sbjct: 134 ASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIAD 185

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 21/39 (53%), Positives = 32/39 (82%)

Query: 258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           EPGAGSD+ G++T+AV+ GD+W++NGQK+W +    A+W
Sbjct: 125 EPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADW 163

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 65.7 bits (160), Expect = 4e-12
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167
           GQRA     I FE+VRVP +++L  EG GF   M  FD +R  +    + +A+  LDE  
Sbjct: 198 GQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETW 257

Query: 168 KYALERKAFGVPIAAHQGM 186
           +Y  ER+AFG P++A QG+
Sbjct: 258 RYVAERQAFGKPLSAFQGV 276

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 27/100 (27%)

Query: 219 GGLELSVFDGCLVAEELAY-GCTGIMTALE------------------------ASG--L 251
           GG+   +    ++ EELA  G +G   +L                          +G  +
Sbjct: 54  GGIGGDLLSAAVLWEELARAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKI 113

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
           GA  +TEPGAGSD+ G++T A K GD ++LNG K +ITNG
Sbjct: 114 GAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNG 153

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           ASG  +G + +TEP  GSD  G++T+A K G  + LNG K WITN  +A+
Sbjct: 122 ASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIAD 171

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 31/67 (46%), Positives = 40/67 (59%)

Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
           I+FE+VRVP +N+LLGEG GF+IA       R       +G A+R +    + AL RKAF
Sbjct: 649 ISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAF 708

Query: 177 GVPIAAH 183
           G  IA H
Sbjct: 709 GKLIAQH 715

Length = 822

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M   +  R  +AA A+G A+  LDEA +YA +RK FG P+A  Q
Sbjct: 187 MKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQ 230

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
           ITF++VRVP  N++LGEG GF+IA       R       +G A+R L+   + A+ R+AF
Sbjct: 225 ITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAF 284

Query: 177 GVPIAAH 183
           G  +A H
Sbjct: 285 GKKLAQH 291

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
          M+T +  R  +AA A+GLA+R LDEA +YA +RKAFG P+   Q+
Sbjct: 8  METLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQL 52

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 18/84 (21%)

Query: 226 FDGCLVAEELAYGCTGIMTALEASG-----------------LGAYCVTEPGAGSDVNGV 268
           F         A G  G    L A G                  G  C+TEP AGSD+  +
Sbjct: 76  FSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGAL 135

Query: 269 KTKAVKKGD-EWILNGQKMWITNG 291
           +TKAV + D  W +NG K +I+ G
Sbjct: 136 RTKAVYQADGSWRINGVKRFISAG 159

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDE-WILNGQKMWITNGGVAN 295
           L    +GA  ++EPGAG+DV G++T A K  +  ++LNG K+WITNG VA+
Sbjct: 147 LTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVAD 197

Length = 410

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 24/44 (54%), Positives = 27/44 (61%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M T D  R  +AA A+G+AQ  LD A  YA ERK FG PIA  Q
Sbjct: 230 MQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQ 273

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF 46
           M+T +  R  +AA A+G+A+  L+EA  YA ERK FG PIA  Q+ 
Sbjct: 245 METLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLV 290

Length = 393

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           +EPG+GSD+  +KTKA KKGD+WI+NGQK W T    A+W
Sbjct: 128 SEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADW 167

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G     T  +  ++V V + +++  EG GF   M  F+  R   AA ++G A+   ++A
Sbjct: 201 IGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDA 260

Query: 167 TKYALERKAFGVPIAAHQGMYLKIQYVSI 195
            +YA +R  FG PI  +Q +  K+  ++I
Sbjct: 261 ARYANQRIQFGKPIGHNQLIQEKLTLMAI 289

Length = 381

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +GA  ++EP +GSDV  +K KA +    ++LNG KMW TNG VA 
Sbjct: 143 VGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQ 187

Length = 404

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
           M    + R  +AAGA+  A+  L+E   Y  +RKAFG  +A  QV   ++ E   +  A+
Sbjct: 230 MQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKV-AV 288

Query: 61  ARKF 64
            R F
Sbjct: 289 TRAF 292

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 52  ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           E  Q  +   R F  +EI P+AAE D  GE+P  ++K+  ELGL+   IP
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIP 50

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 242 IMTALEASGLGAYC--VTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVA 294
              +   +G  AY   +TEPGAGSD N   T   +K  +  LNGQK +IT     
Sbjct: 108 TAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEY 162

Length = 381

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 249 SGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
             +  + +TEP  GSD + + T A K    WILNGQK WI N   A+
Sbjct: 141 DTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFAD 187

Length = 412

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
           M   D  R  +A G +G+ Q  LD A  YA +RK FG PI   Q+   +L +      A 
Sbjct: 233 MSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNA- 291

Query: 61  ARKFCREEIIPVAAEHDR 78
                R  +  VA   DR
Sbjct: 292 ----SRSYLYTVAKACDR 305

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 30/112 (26%)

Query: 211 NVFLVSVSGGLELSVFDGCLVAEEL--------AYGC----TGIMTALEASG-------- 250
           N+FL  VSG   L+  +   +AEE          + C    TG M  L   G        
Sbjct: 57  NLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQW 116

Query: 251 ---------LGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
                      A+ +TEP  A SD   ++    + GD++++NG+K W +  G
Sbjct: 117 LEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAG 168

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 48/99 (48%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G R      ITF+DV + ++++   EG GF    + FD  R  VA    G A    ++A
Sbjct: 200 LGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDA 259

Query: 167 TKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
            +YA +R  FG  I   Q +  K  +++I    ++ ML 
Sbjct: 260 ARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLY 298

Length = 380

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 130 LLG-EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
           L+G EG G    ++  + +R   A  A+G+ +R L EA  YA  R+AFG P+  H  M
Sbjct: 255 LIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLM 312

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 6   KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
             R  +A GA+G A+ C   A +Y L+RK FG P+AA Q+   +L +   E   
Sbjct: 244 NARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIAL 297

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
           E+ MG   S T  + F++ +      L+GE G G        +  R  V     GLA+  
Sbjct: 208 EEKMGLHGSPTCELVFDNAKGE----LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAA 263

Query: 163 LDEATKYALERKAFGVPIAA 182
              A  YA ERK  G  I A
Sbjct: 264 YLNALAYAKERKQGGDLIKA 283

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
           M  FD +R  +    + +A+  LDE  +Y  ER+AFG P++A Q     L + + + +A 
Sbjct: 231 MQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEA- 289

Query: 61  ARKFC------REEIIPVAAEHDRTGEYPWGIVKKA----HELGLINGHIPASEQNMGQR 110
           AR  C      ++  +P  +E        W   K A    H+  L +GH      +M QR
Sbjct: 290 ARLLCLQTLWLKDHGLPHTSE---AAMCKWWAPKLAYDVIHQCLLTHGHGGYDRGDMEQR 346

Query: 111 ASDTRGITFED 121
             D  G    D
Sbjct: 347 LRDVLGFQIGD 357

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGL 95
          LNE Q+  Q +AR F  +E+ P AA+ D+   +P  +++KA ELG 
Sbjct: 1  LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGF 46

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 50  LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA 102
           L++  +  +   R+F ++EI P+AA+ DR  E+P  + +K  +LGL+    P 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPE 54

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI 40
           M   +  R  +AA AVG+A+R ++  T YA ERKAFG PI
Sbjct: 264 MRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPI 303

Length = 410

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  +G R      I  +DV VP E+ L G  + F+        +R  VA   +G++    
Sbjct: 219 ENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNS-FQDTNKVLAVSRVMVAWQPIGISMGVY 277

Query: 164 DEATKYALERKAFGVPIAAHQ 184
           D   +Y  ERK FG P+AA Q
Sbjct: 278 DMCHRYLKERKQFGAPLAAFQ 298

Length = 412

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELG 94
          E Q+E +  AR+F  EE+ P A E   T E PW ++ +   L 
Sbjct: 1  EEQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLL 43

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDR---TGEYPWGIVKKAHELGLINGHIPASEQ 105
           +L+E Q+  +A  R+F  EE+ P AAE DR      +P  +++   E GL+   IP    
Sbjct: 4   DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYG 63

Query: 106 NMG 108
            +G
Sbjct: 64  GLG 66

Length = 393

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
           M   D  R  +AAG +GL Q CLD    Y  +R+ FG PI   Q    +L +     Q+
Sbjct: 259 MSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQS 317

Length = 404

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 7   TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA------- 59
           +R   A  A+G+ +R L EA  YA  R+AFG P+  H +   +L E + + +A       
Sbjct: 273 SRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFR 332

Query: 60  LARKFCREEIIPVAAEHDRTGEYPW 84
            AR F R       A  D+  E   
Sbjct: 333 AARAFDR-------AAADKPVEAHM 350

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEA-SGLGAYCVTEPGAGSD 264
           GG  L   +  LVAEELA     +  AL   S L A  +     G++
Sbjct: 55  GGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILR--FGTE 99

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWIT 289
           A  +TEP  GSD   ++ +A + GD+++LNG+K  I+
Sbjct: 117 AIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSIS 153

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 254 YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
             +TEPGAGSDV  +KT   ++  +  LNG K +IT+ 
Sbjct: 122 SAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSS 159

Length = 380

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNG 291
            SG   G  C+TEP  G+D+  VKTKA    D  + + G K++I+ G
Sbjct: 177 VSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAG 223

Length = 622

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
           M   +  R  +A+ ++G AQ  LD A  Y  ERK FG P+A  Q    +L +   E  A 
Sbjct: 230 MAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVA- 288

Query: 61  ARKFCR 66
           +R   R
Sbjct: 289 SRLMVR 294

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG0140|consensus	408		99.97
KOG0139|consensus	398		99.97
KOG0141|consensus	421		99.96
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	99.92
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	99.92
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	99.92
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	99.91
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	99.91
PLN02519	404	isovaleryl-CoA dehydrogenase	99.91
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	99.9
PLN02526	412	acyl-coenzyme A oxidase	99.9
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	99.9
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	99.9
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	99.89
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	99.89
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	99.88
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	99.88
KOG0139|consensus	398		99.87
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	99.86
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	99.86
KOG0138|consensus	432		99.86
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	99.84
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.84
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	99.84
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.82
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.81
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.8
PLN02876	822	acyl-CoA dehydrogenase	99.8
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.75
KOG0140|consensus	408		99.73
KOG0141|consensus	421		99.7
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.68
KOG0137|consensus	634		99.68
PLN02636	686	acyl-coenzyme A oxidase	99.67
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.66
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.64
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.57
KOG0137|consensus	634		99.56
PLN02312	680	acyl-CoA oxidase	99.51
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	99.45
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	99.43
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	99.41
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	99.41
PLN02636	686	acyl-coenzyme A oxidase	99.39
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.37
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	99.36
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	99.36
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	99.36
PLN02312	680	acyl-CoA oxidase	99.35
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	99.34
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	99.34
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	99.34
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	99.34
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.33
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	99.33
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	99.33
PLN02519	404	isovaleryl-CoA dehydrogenase	99.32
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.32
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	99.3
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.3
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.29
KOG0138|consensus	432		99.29
PLN02876	822	acyl-CoA dehydrogenase	99.27
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	99.22
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.21
KOG1469|consensus	392		99.21
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.2
PLN02526	412	acyl-coenzyme A oxidase	99.19
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	99.19
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.15
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.1
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.03
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.02
PLN02443	664	acyl-coenzyme A oxidase	98.98
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	98.96
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	98.95
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	98.94
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	98.94
KOG1469|consensus	392		98.87
PLN02443	664	acyl-coenzyme A oxidase	98.81
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	98.76
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	98.5
KOG0135|consensus	661		98.47
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	98.37
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.19
KOG0135|consensus	661		97.05
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	96.07
KOG0136|consensus	670		95.48
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	94.63
PF08028	134	Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal	94.3
KOG0136|consensus	670		87.03
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	82.55

>KOG0140|consensus

Probab=99.97  E-value=1.7e-30  Score=222.60  Aligned_cols=146  Identities=57%  Similarity=0.955  Sum_probs=136.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         47 YSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      +|.|+++|++|++.+++|.++++.|.+.+||..++||++++++..++|+....+|+                        
T Consensus        25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~------------------------   80 (408)
T KOG0140|consen   25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPE------------------------   80 (408)
T ss_pred             ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCcc------------------------
Confidence            48899999999999999999999999999999999999999999999999999998                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (408)
T KOG0140|consen   81 --------------------------------------------------------------------------------   80 (408)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcc---------------------------cceeeecCC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASG---------------------------LGAYCVTEP  259 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~---------------------------~~~~a~tEp  259 (312)
                                .|||.|++..+.+++.|+|+.+|.++...+.++.                           ++++|+|||
T Consensus        81 ----------~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEP  150 (408)
T KOG0140|consen   81 ----------DYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHNLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEP  150 (408)
T ss_pred             ----------ccCCCCchhHHHHHHHHHHHccchhHHHHHhccchhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCC
Confidence                      6799999999999999999999999887665433                           348999999


Q ss_pred             CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ++|||+.+++|+|++.||.|+|||+|.||||+.+|+|++|.++++++
T Consensus       151 gAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~  197 (408)
T KOG0140|consen  151 GAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPD  197 (408)
T ss_pred             CCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCC
Confidence            99999999999999999999999999999999999999999877765

>KOG0139|consensus

Probab=99.97  E-value=3.6e-30  Score=224.03  Aligned_cols=148  Identities=41%  Similarity=0.635  Sum_probs=142.7

Q ss_pred             CCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCC--------------------------
Q psy10338         49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA--------------------------  102 (312)
Q Consensus        49 ~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~--------------------------  102 (312)
                      .|+|++..+++.+++|.++++.|.++++|.+..+|..+++.+.++|++++.+|+                          
T Consensus        36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv  115 (398)
T KOG0139|consen   36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV  115 (398)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence            589999999999999999999999999999999999999999999999999999                          


Q ss_pred             --------------------------------------------------------------------------------
Q psy10338        103 --------------------------------------------------------------------------------  102 (312)
Q Consensus       103 --------------------------------------------------------------------------------  102 (312)
                                                                                                      
T Consensus       116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~  195 (398)
T KOG0139|consen  116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD  195 (398)
T ss_pred             eeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence                                                                                            


Q ss_pred             ---------------------------------CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccCh
Q psy10338        103 ---------------------------------SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRP  149 (312)
Q Consensus       103 ---------------------------------~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~  149 (312)
                                                       +.+++|+|++.++.++|||||||.+++||+.|.|++|.+..||.+|+
T Consensus       196 ~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRI  275 (398)
T KOG0139|consen  196 WFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRI  275 (398)
T ss_pred             eEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccce
Confidence                                             68999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        150 PVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       150 ~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      .++++.+|+++.|+|.++.|+++|.+||++|.++|.+||+++..+..
T Consensus       276 gi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~te  322 (398)
T KOG0139|consen  276 GIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATE  322 (398)
T ss_pred             eehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999997665543

>KOG0141|consensus

Probab=99.96  E-value=1.8e-29  Score=216.54  Aligned_cols=148  Identities=35%  Similarity=0.533  Sum_probs=134.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCC--HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         47 YSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYP--WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p--~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      -+.|++||+.||+.+++|+++++.|++.+||..++|+  +++|+++++.|++|++.|+                      
T Consensus        38 ~~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~----------------------   95 (421)
T KOG0141|consen   38 MFGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPE----------------------   95 (421)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchh----------------------
Confidence            3569999999999999999999999999999999995  7999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (421)
T KOG0141|consen   96 --------------------------------------------------------------------------------   95 (421)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH----------------------------hhhcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA----------------------------LEASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~----------------------------~~g~~~~~~a~  256 (312)
                                  +|||.|.+....+.++||++|+.++.+..                            .+|+.++++|+
T Consensus        96 ------------~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAM  163 (421)
T KOG0141|consen   96 ------------EYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAM  163 (421)
T ss_pred             ------------hhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeee
Confidence                        67999999999999999999887665532                            22778899999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCCCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKP  308 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~  308 (312)
                      |||++|||+.+++++|++++++|+|||+|.||||++.||+++|-++|+++.+
T Consensus       164 sEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~  215 (421)
T KOG0141|consen  164 SEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAV  215 (421)
T ss_pred             cCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCC
Confidence            9999999999999999999999999999999999999999999999888744

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=99.92  E-value=1.4e-24  Score=202.32  Aligned_cols=144  Identities=28%  Similarity=0.316  Sum_probs=127.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcc-cchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         46 FYSELNETQQEFQALARKFCREEI-IPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~-~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      |+|.+|++|++|++.+++|+.+++ .+...++|..+.||.++|++|.+.||+++.+|+                      
T Consensus         1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~----------------------   58 (380)
T PRK03354          1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPE----------------------   58 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCCh----------------------
Confidence            688999999999999999999886 566677888888999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (380)
T PRK03354         59 --------------------------------------------------------------------------------   58 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh--------------------------hcccceeeecC
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASGLGAYCVTE  258 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~--------------------------g~~~~~~a~tE  258 (312)
                                  +|||.|++..++..++++++++|++++++..                          |+.+.++++||
T Consensus        59 ------------~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE  126 (380)
T PRK03354         59 ------------EHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITE  126 (380)
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence                        6799999999999999999998887654322                          33356899999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      |+.|||+..+.|+|++++|||+|||+|.|||++.+|||++|.+++
T Consensus       127 ~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~  171 (380)
T PRK03354        127 PGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARD  171 (380)
T ss_pred             CCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence            999999999999999999999999999999999999999998654

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=99.92  E-value=2.7e-24  Score=200.92  Aligned_cols=144  Identities=31%  Similarity=0.438  Sum_probs=126.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |+|.++++|+++++.+++|+++++.|...+.+..+.+|+++|+++.+.||+++ +|+                       
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~-----------------------   64 (386)
T cd01151           9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIK-----------------------   64 (386)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-Ccc-----------------------
Confidence            78899999999999999999999999988888888899999999999999999 998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        65 --------------------------------------------------------------------------------   64 (386)
T cd01151          65 --------------------------------------------------------------------------------   64 (386)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeec
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVT  257 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~t  257 (312)
                                 +|||.|+++.+...++|+++++|.++++...                            |+.++++++|
T Consensus        65 -----------~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~t  133 (386)
T cd01151          65 -----------GYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLT  133 (386)
T ss_pred             -----------ccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEec
Confidence                       6688888888888888888888776543211                            3445689999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ||++|||+.++.|+|++++|||+|||+|.|||++..|||++|+++++
T Consensus       134 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~  180 (386)
T cd01151         134 EPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND  180 (386)
T ss_pred             CCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEEC
Confidence            99999999999999999999999999999999999999999986544

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=99.92  E-value=5.6e-24  Score=197.98  Aligned_cols=144  Identities=21%  Similarity=0.260  Sum_probs=119.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhcccchhhh--hhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         47 YSELNETQQEFQALARKFCREEIIPVAAE--HDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~--~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      +|.++++|+++++.+++|+++++.|...+  +|..+.||+++|+++.++||+++.+|+                      
T Consensus         1 ~~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe----------------------   58 (378)
T TIGR03203         1 DFDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSE----------------------   58 (378)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccch----------------------
Confidence            36789999999999999999998875532  466778999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (378)
T TIGR03203        59 --------------------------------------------------------------------------------   58 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH--------------------------HhhhcccceeeecC
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT--------------------------ALEASGLGAYCVTE  258 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~--------------------------~~~g~~~~~~a~tE  258 (312)
                                  +|||.|++..+.+.++|++++.+.+.+.                          +..|+.+.++++||
T Consensus        59 ------------~~GG~G~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tE  126 (378)
T TIGR03203        59 ------------ADGGFGAGSVETMIVMEALGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLE  126 (378)
T ss_pred             ------------hcCCCCCCHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecC
Confidence                        5577777777777777777775533221                          11255567999999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |++|||+.+++|+|++++|+|+|||+|.|||++..||+++|.++++
T Consensus       127 p~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~  172 (378)
T TIGR03203       127 KNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTK  172 (378)
T ss_pred             CCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecC
Confidence            9999999999999999999999999999999999999999987654

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=99.91  E-value=2.2e-23  Score=194.42  Aligned_cols=145  Identities=25%  Similarity=0.256  Sum_probs=121.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhccc-chhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         46 FYSELNETQQEFQALARKFCREEII-PVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~-p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      |+|.++++++.+++.++.|+.+++. +...++|+.+.+|+++|++|.+.||+++.+|+                      
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~----------------------   58 (381)
T PRK12341          1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPE----------------------   58 (381)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCCh----------------------
Confidence            7889999999999999999999886 46777888889999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (381)
T PRK12341         59 --------------------------------------------------------------------------------   58 (381)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------------------H-hhhcccceeeecC
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------------------A-LEASGLGAYCVTE  258 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------------------~-~~g~~~~~~a~tE  258 (312)
                                  +|||.|+++.+++.++|++++.|.+...                         + ..|+.+.++++||
T Consensus        59 ------------~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tE  126 (381)
T PRK12341         59 ------------EFGGTPADYVTQMLVLEEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTE  126 (381)
T ss_pred             ------------hhCCCCcCHHHHHHHHHHHhhcChhHHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecC
Confidence                        4566666666666666666666654211                         1 1244457899999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |+.|||+..++|+|++++|||+|||+|.||||+.+||+++|.+.++
T Consensus       127 p~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~  172 (381)
T PRK12341        127 PGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDP  172 (381)
T ss_pred             CCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcC
Confidence            9999999999999999999999999999999999999999986543

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=99.91  E-value=1.8e-23  Score=194.76  Aligned_cols=142  Identities=66%  Similarity=1.089  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338         50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV  129 (312)
Q Consensus        50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l  129 (312)
                      ++++|+.+++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                           
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~---------------------------   53 (378)
T cd01157           1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPE---------------------------   53 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCCh---------------------------
Confidence            57899999999999999999998888998889999999999999999999998                           


Q ss_pred             cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338        130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN  209 (312)
Q Consensus       130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~  209 (312)
                                                                                                      
T Consensus        54 --------------------------------------------------------------------------------   53 (378)
T cd01157          54 --------------------------------------------------------------------------------   53 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCChhHhHHHHHHHHHHccCcchHHHh---------------------------hhcccceeeecCCCCC
Q psy10338        210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL---------------------------EASGLGAYCVTEPGAG  262 (312)
Q Consensus       210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~---------------------------~g~~~~~~a~tEp~~g  262 (312)
                             +|||.|++..+...++|++++.|.++++.+                           .|+.+.++++|||+.|
T Consensus        54 -------~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~g  126 (378)
T cd01157          54 -------DCGGLGLGTFDTCLITEELAYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAG  126 (378)
T ss_pred             -------hhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCC
Confidence                   568888888888888888887777654321                           1444568999999999


Q ss_pred             CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      ||...+.|+|++++|||+|||+|.|||++.+|||++|++++++
T Consensus       127 s~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~  169 (378)
T cd01157         127 SDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDP  169 (378)
T ss_pred             CchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCC
Confidence            9999999999999999999999999999999999999866543

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=99.91  E-value=3.1e-23  Score=194.76  Aligned_cols=146  Identities=30%  Similarity=0.442  Sum_probs=129.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHH--HHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~--~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      .-||.++++|.++++.+++|+++++.|...++|..+.+|.+  +|++|.+.||+++.+|+                    
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~--------------------   80 (404)
T PLN02519         21 SSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPE--------------------   80 (404)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCCh--------------------
Confidence            35889999999999999999999999998889988888876  79999999999999998                    


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (404)
T PLN02519         81 --------------------------------------------------------------------------------   80 (404)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hccccee
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAY  254 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~  254 (312)
                                    +|||.|+++.+.+.++|++++.|.++++.+.                            |+.+.++
T Consensus        81 --------------e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~  146 (404)
T PLN02519         81 --------------EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGAL  146 (404)
T ss_pred             --------------hhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEE
Confidence                          6789999998999999999998888765321                            3344589


Q ss_pred             eecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        255 CVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       255 a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ++|||++|||...++|+|++++|||+|||+|.|||++.+||+++|.+.++
T Consensus       147 a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~  196 (404)
T PLN02519        147 AMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTD  196 (404)
T ss_pred             EecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999986554

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=99.90  E-value=2.5e-23  Score=194.78  Aligned_cols=144  Identities=26%  Similarity=0.348  Sum_probs=120.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhcccchhhhh-hhcCCCCH----HHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcc
Q psy10338         47 YSELNETQQEFQALARKFCREEIIPVAAEH-DRTGEYPW----GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFED  121 (312)
Q Consensus        47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~-d~~~~~p~----~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~d  121 (312)
                      ||.++++|++|++.+++|+.+++.|...+. .+...+|.    ++|+++.++||+++.+|+                   
T Consensus         1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe-------------------   61 (395)
T TIGR03204         1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPK-------------------   61 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCc-------------------
Confidence            578999999999999999999998876543 33345664    899999999999999998                   


Q ss_pred             eecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHH
Q psy10338        122 VRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQ  201 (312)
Q Consensus       122 v~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~  201 (312)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (395)
T TIGR03204        62 --------------------------------------------------------------------------------   61 (395)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh--------------------------hhcccceee
Q psy10338        202 LMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL--------------------------EASGLGAYC  255 (312)
Q Consensus       202 ~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~--------------------------~g~~~~~~a  255 (312)
                                     +|||.|++..+++.++|++++++.+.++..                          .|+.+.+++
T Consensus        62 ---------------~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a  126 (395)
T TIGR03204        62 ---------------QYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQG  126 (395)
T ss_pred             ---------------ccCCCCCCHHHHHHHHHHHHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeE
Confidence                           668888888888888888888776654311                          144456899


Q ss_pred             ecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        256 VTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       256 ~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      +|||++|||+..++|+|++++|+|+|||+|.|||++..||+++|.+.++
T Consensus       127 ~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~  175 (395)
T TIGR03204       127 FSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTD  175 (395)
T ss_pred             ecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeC
Confidence            9999999999999999999999999999999999999999999986654

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PLN02526 acyl-coenzyme A oxidase

Probab=99.90  E-value=3.9e-23  Score=194.49  Aligned_cols=154  Identities=27%  Similarity=0.391  Sum_probs=129.0

Q ss_pred             cCcccccccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcc
Q psy10338         36 FGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTR  115 (312)
Q Consensus        36 ~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~  115 (312)
                      |+..++....||..++++|++|++.+++|+++++.|...+.+....+|+++|++|.++||+++.+ +             
T Consensus        15 ~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~-------------   80 (412)
T PLN02526         15 FPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K-------------   80 (412)
T ss_pred             CChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c-------------
Confidence            33334444457778999999999999999999999987776777789999999999999999887 5             


Q ss_pred             cEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338        116 GITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       116 ~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~  195 (312)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (412)
T PLN02526         81 --------------------------------------------------------------------------------   80 (412)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------h
Q psy10338        196 FEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------E  247 (312)
Q Consensus       196 ~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~  247 (312)
                                           +|||.|+++.+++.++|++++.|.+.+.++                            .
T Consensus        81 ---------------------~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~  139 (412)
T PLN02526         81 ---------------------GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQ  139 (412)
T ss_pred             ---------------------ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhC
Confidence                                 568888888888888888888887654221                            1


Q ss_pred             hcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        248 ASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       248 g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |+.++++++|||+.|||+.++.|+|++++|||+|||+|.|||++..|||++|.+.++
T Consensus       140 G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~  196 (412)
T PLN02526        140 LDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNT  196 (412)
T ss_pred             CCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeC
Confidence            344568899999999999999999999999999999999999999999999986543

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=99.90  E-value=4.1e-23  Score=191.99  Aligned_cols=141  Identities=28%  Similarity=0.425  Sum_probs=123.9

Q ss_pred             CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338         50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV  129 (312)
Q Consensus        50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l  129 (312)
                      |+++|+.+++.+++|+++++.|...+.|+.+.+|+++|+++.+.||+++.+|+                           
T Consensus         1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~---------------------------   53 (372)
T TIGR03207         1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPE---------------------------   53 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCCh---------------------------
Confidence            57899999999999999999999888888889999999999999999999998                           


Q ss_pred             cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338        130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN  209 (312)
Q Consensus       130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~  209 (312)
                                                                                                      
T Consensus        54 --------------------------------------------------------------------------------   53 (372)
T TIGR03207        54 --------------------------------------------------------------------------------   53 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCChhHhHHHHHHHHHHccCcchHHHh---------------------------hhcccceeeecCCCCC
Q psy10338        210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL---------------------------EASGLGAYCVTEPGAG  262 (312)
Q Consensus       210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~---------------------------~g~~~~~~a~tEp~~g  262 (312)
                             +|||.|+++.+...+.|++++.|.+++++.                           .|+.+.++++|||++|
T Consensus        54 -------~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~G  126 (372)
T TIGR03207        54 -------EHGGLGMGCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGG  126 (372)
T ss_pred             -------hHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCC
Confidence                   568888888888888888888777765331                           1445669999999999


Q ss_pred             CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ||..++.|+|++++|||+|||+|.|||++.+|||++|++.++
T Consensus       127 sd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~  168 (372)
T TIGR03207       127 SDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTG  168 (372)
T ss_pred             cChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcC
Confidence            999999999999999999999999999999999999996554

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=99.90  E-value=1.1e-22  Score=189.43  Aligned_cols=141  Identities=33%  Similarity=0.553  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338         50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV  129 (312)
Q Consensus        50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l  129 (312)
                      ++++++.|++.+++|+++++.|.+.++|+.+.+|+++|++|.+.||+++.+|+                           
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~---------------------------   54 (376)
T cd01156           2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPE---------------------------   54 (376)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCH---------------------------
Confidence            67899999999999999999998888888888999999999999999999998                           


Q ss_pred             cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338        130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN  209 (312)
Q Consensus       130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~  209 (312)
                                                                                                      
T Consensus        55 --------------------------------------------------------------------------------   54 (376)
T cd01156          55 --------------------------------------------------------------------------------   54 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeecCCCC
Q psy10338        210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVTEPGA  261 (312)
Q Consensus       210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~tEp~~  261 (312)
                             +|||.|+++.+...++|++++.|.++++.+.                            |+.+.++++|||++
T Consensus        55 -------e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~  127 (376)
T cd01156          55 -------EYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNA  127 (376)
T ss_pred             -------hhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCC
Confidence                   6688888888888888888888887665321                            33455899999999


Q ss_pred             CCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        262 GSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       262 gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||..+++|+|++++|||+|||+|.|||++.+||+++|.+.++
T Consensus       128 gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~  170 (376)
T cd01156         128 GSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTD  170 (376)
T ss_pred             CCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeC
Confidence            9999999999999999999999999999999999999986544

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=99.89  E-value=1.7e-22  Score=188.10  Aligned_cols=140  Identities=36%  Similarity=0.613  Sum_probs=123.4

Q ss_pred             CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338         50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV  129 (312)
Q Consensus        50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l  129 (312)
                      ++|+|+++++.+++|+++++.|.+.++|..+.+|+++|+++.+.||+++.+|+                           
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~---------------------------   53 (375)
T cd01162           1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRD---------------------------   53 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCH---------------------------
Confidence            57899999999999999999999888899899999999999999999999998                           


Q ss_pred             cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338        130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN  209 (312)
Q Consensus       130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~  209 (312)
                                                                                                      
T Consensus        54 --------------------------------------------------------------------------------   53 (375)
T cd01162          54 --------------------------------------------------------------------------------   53 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCC
Q psy10338        210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAG  262 (312)
Q Consensus       210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~g  262 (312)
                             +|||.|.++.+.+.++|+++++|+++++++.                           +..++++++|||++|
T Consensus        54 -------~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~g  126 (375)
T cd01162          54 -------DVGGSGLSRLDASIIFEALSTGCVSTAAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSG  126 (375)
T ss_pred             -------hhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCC
Confidence                   6688888888888888888888877653221                           334568999999999


Q ss_pred             CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      ||...+.|+|++++|||+|||+|.|||++.+||+++|++.+
T Consensus       127 sd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~  167 (375)
T cd01162         127 SDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMART  167 (375)
T ss_pred             CChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEe
Confidence            99999999999999999999999999999999999998654

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=99.89  E-value=2.1e-22  Score=189.49  Aligned_cols=144  Identities=28%  Similarity=0.456  Sum_probs=122.3

Q ss_pred             cC-CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         46 FY-SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        46 m~-~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      |+ |.++++++++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                      
T Consensus        32 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~----------------------   89 (410)
T PTZ00461         32 MDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPE----------------------   89 (410)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCCh----------------------
Confidence            54 6899999999999999999999999888888889999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        90 --------------------------------------------------------------------------------   89 (410)
T PTZ00461         90 --------------------------------------------------------------------------------   89 (410)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH----------------------------Hhhhcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT----------------------------ALEASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~----------------------------~~~g~~~~~~a~  256 (312)
                                  +|||.|+++.+...++|++++.++++++                            +..|+.++++++
T Consensus        90 ------------~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~  157 (410)
T PTZ00461         90 ------------ADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGM  157 (410)
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEe
Confidence                        5577777777777777777776654332                            112445668999


Q ss_pred             cCCCCCCCcCCceeEEEEeC-CEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        257 TEPGAGSDVNGVKTKAVKKG-DEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~-~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      |||++|||+.++.|+|++++ |+|+|||+|.||||+..|||++|.+.+
T Consensus       158 tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~  205 (410)
T PTZ00461        158 SEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKV  205 (410)
T ss_pred             cCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEe
Confidence            99999999999999999986 489999999999999999999998654

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=99.88  E-value=3.5e-22  Score=185.70  Aligned_cols=141  Identities=34%  Similarity=0.533  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccc
Q psy10338         52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL  131 (312)
Q Consensus        52 ~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG  131 (312)
                      ++|++|++.+++|+++++.|.+.++|.++.+|+++|++|.++||+++.+|+                             
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~-----------------------------   51 (372)
T cd01160           1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPE-----------------------------   51 (372)
T ss_pred             ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCH-----------------------------
Confidence            478899999999999999998888998889999999999999999999998                             


Q ss_pred             cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccc
Q psy10338        132 GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCN  211 (312)
Q Consensus       132 ~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~  211 (312)
                                                                                                      
T Consensus        52 --------------------------------------------------------------------------------   51 (372)
T cd01160          52 --------------------------------------------------------------------------------   51 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCChhHhHHHHHHHHHHccCcchH---------------------------HHhhhcccceeeecCCCCCCC
Q psy10338        212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIM---------------------------TALEASGLGAYCVTEPGAGSD  264 (312)
Q Consensus       212 ~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~---------------------------~~~~g~~~~~~a~tEp~~gsd  264 (312)
                           +|||.|+++.+...++|++++.+.+..                           .+..|+.++++++|||++|||
T Consensus        52 -----~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd  126 (372)
T cd01160          52 -----EYGGIGGDLLSAAVLWEELARAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSD  126 (372)
T ss_pred             -----HHCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCc
Confidence                 456666666666666666666433311                           111244567999999999999


Q ss_pred             cCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       265 ~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ...++|+|++++|||+|||+|.||||+.+||+++|++.++++
T Consensus       127 ~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~  168 (372)
T cd01160         127 LQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGE  168 (372)
T ss_pred             hhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCC
Confidence            999999999999999999999999999999999998665443

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=99.88  E-value=4.9e-22  Score=187.01  Aligned_cols=144  Identities=31%  Similarity=0.472  Sum_probs=119.8

Q ss_pred             cccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEccee
Q psy10338         44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVR  123 (312)
Q Consensus        44 ~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~  123 (312)
                      ..|+++++++|+++++.+++|+++++.|.  +++..+.+|.++|++|.+.||+++.+|+                     
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~---------------------   77 (409)
T cd01161          21 SVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPE---------------------   77 (409)
T ss_pred             cccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCCh---------------------
Confidence            55899999999999999999999999886  4567778999999999999999999998                     


Q ss_pred             cCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHH
Q psy10338        124 VPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM  203 (312)
Q Consensus       124 Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~  203 (312)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (409)
T cd01161          78 --------------------------------------------------------------------------------   77 (409)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceee
Q psy10338        204 LLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYC  255 (312)
Q Consensus       204 ~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a  255 (312)
                                   +|||.|++..++..++|++++ |.++++.+                            .|+.+++++
T Consensus        78 -------------~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a  143 (409)
T cd01161          78 -------------EYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA  143 (409)
T ss_pred             -------------hhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEE
Confidence                         456666666666677777776 65543221                            245566999


Q ss_pred             ecCCCCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        256 VTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       256 ~tEp~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      +|||++|||...++|+|+++  +++|+|||+|.||||+.+|||++|.++++
T Consensus       144 ~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~  194 (409)
T cd01161         144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTE  194 (409)
T ss_pred             ecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcC
Confidence            99999999999999999994  55899999999999999999999986543

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>KOG0139|consensus

Probab=99.87  E-value=7.9e-23  Score=178.37  Aligned_cols=119  Identities=30%  Similarity=0.474  Sum_probs=106.1

Q ss_pred             HHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------
Q psy10338        190 IQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------  247 (312)
Q Consensus       190 l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------  247 (312)
                      ++...-++..+.+.+.++|+.+..+|++|||.|.++.....++||+++.|++++.++.                      
T Consensus        63 mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~  142 (398)
T KOG0139|consen   63 MDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKY  142 (398)
T ss_pred             hhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhh
Confidence            3444556667888899999999999999999999999999999999999999885433                      


Q ss_pred             -----hcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCCCC
Q psy10338        248 -----ASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKP  308 (312)
Q Consensus       248 -----g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~  308 (312)
                           +..+++||+|||++|||+.+++|+|+++||.|+|||+|.||||+.+|||++|++++|+++.
T Consensus       143 ~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~  208 (398)
T KOG0139|consen  143 LPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKG  208 (398)
T ss_pred             cchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhc
Confidence                 5567899999999999999999999999999999999999999999999999988766543

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=99.86  E-value=1.5e-21  Score=193.08  Aligned_cols=172  Identities=20%  Similarity=0.250  Sum_probs=128.1

Q ss_pred             cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHH-HHHhhhhcccchhhhhhhcCCCC
Q psy10338          5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL-ARKFCREEIIPVAAEHDRTGEYP   83 (312)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~-~~~f~~~~~~p~~~~~d~~~~~p   83 (312)
                      ++||.+++||.++..+.-|..-.+..+..   +-|       ...+|+|++++++. +++|+...  ......++.+.+|
T Consensus        44 ~te~~a~~ag~~~~~~~lF~G~~~~~~l~---~~p-------~~~Ls~ee~~~~d~~v~~l~~~~--~~~~~~~~~~~~P  111 (777)
T PRK09463         44 QTEREALEAGTVWWEGELFSGKPDWKKLL---NYP-------KPTLTAEEQAFLDGPVEELCRMV--NDWQITHELADLP  111 (777)
T ss_pred             HHHHHHHHcCCchhhhhhcCCCCChHHhc---CCC-------CCCCCHHHHHHHHHHHHHHHHHH--HHHHHhccccCCC
Confidence            67889999999998887776655444332   111       23578999999986 88877631  1222223346899


Q ss_pred             HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHH
Q psy10338         84 WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL  163 (312)
Q Consensus        84 ~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l  163 (312)
                      +++|++++++||+++.+|+                                                             
T Consensus       112 ~e~w~~L~e~G~~gl~IPe-------------------------------------------------------------  130 (777)
T PRK09463        112 PEVWQFIKEHGFFGMIIPK-------------------------------------------------------------  130 (777)
T ss_pred             HHHHHHHHHCCCCcCCCch-------------------------------------------------------------
Confidence            9999999999999999998                                                             


Q ss_pred             HHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchH
Q psy10338        164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIM  243 (312)
Q Consensus       164 ~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  243 (312)
                                                                           +|||.|++..+...++|++++.+.+++
T Consensus       131 -----------------------------------------------------eyGG~Gls~~~~a~v~eeLg~~~~s~a  157 (777)
T PRK09463        131 -----------------------------------------------------EYGGLEFSAYAHSRVLQKLASRSGTLA  157 (777)
T ss_pred             -----------------------------------------------------hhCCCCCCHHHHHHHHHHHHhhCcchh
Confidence                                                                 567777777777777777777665532


Q ss_pred             H-----------------------------HhhhcccceeeecCCCCCCCcCCceeEE-----EEeCC---EEEEeeeee
Q psy10338        244 T-----------------------------ALEASGLGAYCVTEPGAGSDVNGVKTKA-----VKKGD---EWILNGQKM  286 (312)
Q Consensus       244 ~-----------------------------~~~g~~~~~~a~tEp~~gsd~~~~~t~A-----~~~~~---g~~l~G~k~  286 (312)
                      .                             +..|+.+.|+++|||++|||+.+++|++     +++|+   ||+|||+|.
T Consensus       158 ~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~  237 (777)
T PRK09463        158 VTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKR  237 (777)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEE
Confidence            1                             1125556799999999999999888654     45565   699999999


Q ss_pred             eeeCCCcccEEEEEec
Q psy10338        287 WITNGGVANWQNRTRD  302 (312)
Q Consensus       287 ~vs~~~~ad~~~v~~~  302 (312)
                      |||+++.||+++|..+
T Consensus       238 ~IT~a~~Ad~l~V~ar  253 (777)
T PRK09463        238 YITLAPIATVLGLAFK  253 (777)
T ss_pred             eeCCCCccCEEEEEEE
Confidence            9999999999988743

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=99.86  E-value=4.6e-21  Score=178.23  Aligned_cols=140  Identities=39%  Similarity=0.628  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccc
Q psy10338         52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL  131 (312)
Q Consensus        52 ~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG  131 (312)
                      ++|.++++.+++|+.+++.+.+.+.|.++.+|.++|++|.+.||+++.+|+                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~-----------------------------   51 (373)
T cd01158           1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPE-----------------------------   51 (373)
T ss_pred             ChHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCH-----------------------------
Confidence            368899999999999999988888888888999999999999999999998                             


Q ss_pred             cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccc
Q psy10338        132 GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCN  211 (312)
Q Consensus       132 ~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~  211 (312)
                                                                                                      
T Consensus        52 --------------------------------------------------------------------------------   51 (373)
T cd01158          52 --------------------------------------------------------------------------------   51 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeecCCCCCC
Q psy10338        212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVTEPGAGS  263 (312)
Q Consensus       212 ~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~tEp~~gs  263 (312)
                           +|||.|.++.++..++|++++.|+++++...                            |..++++++|||++||
T Consensus        52 -----e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs  126 (373)
T cd01158          52 -----EYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGS  126 (373)
T ss_pred             -----HHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Confidence                 6688888888888888888888887765322                            3345589999999999


Q ss_pred             CcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        264 DVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       264 d~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |...+.++|++++|||+|||+|.|+|++.+|||++|.+.+++
T Consensus       127 ~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~  168 (373)
T cd01158         127 DAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDP  168 (373)
T ss_pred             CHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCC
Confidence            998999999999999999999999999999999999865443

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>KOG0138|consensus

Probab=99.86  E-value=3.5e-21  Score=165.23  Aligned_cols=170  Identities=24%  Similarity=0.355  Sum_probs=114.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      ++..|++|...+++.+|+++++++.|...+..+...||+++..+++++|++|..+--                       
T Consensus        51 l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikG-----------------------  107 (432)
T KOG0138|consen   51 LEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKG-----------------------  107 (432)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccC-----------------------
Confidence            345689999999999999999999999999999999999999999999999977652                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                          ++..+++..+-|+..+-++..-.-.  |..        =.|              +..+ 
T Consensus       108 --------------------YGCaG~S~vaygl~~rEveRVDs~y--rs~--------~sV--------------qsSL-  142 (432)
T KOG0138|consen  108 --------------------YGCAGVSSVAYGLLAREVERVDSGY--RSA--------MSV--------------QSSL-  142 (432)
T ss_pred             --------------------cCCCchHHHHHHHHHHHHHHhhhhc--hhh--------hhh--------------hhhh-
Confidence                                1122222233333322221110000  000        000              0000 


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcccceeeecCCCCCCCcCCceeEEEEeCCE--EEEee
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDE--WILNG  283 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g--~~l~G  283 (312)
                           .+.-+-.||.-.           .--+.   +|-+..+..++||++|||++|||+.++.|+|+.++++  |.|||
T Consensus       143 -----~m~~Iy~~GSE~-----------QkqkY---lPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNG  203 (432)
T KOG0138|consen  143 -----VMGPIYAYGSEE-----------QKQKY---LPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNG  203 (432)
T ss_pred             -----hhhhHhhcCCHH-----------HHhhh---hhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECC
Confidence                 000000111110           00111   2334468889999999999999999999999999886  99999


Q ss_pred             eeeeeeCCCcccEEEEEec
Q psy10338        284 QKMWITNGGVANWQNRTRD  302 (312)
Q Consensus       284 ~k~~vs~~~~ad~~~v~~~  302 (312)
                      +|+||+|++.||+++|.++
T Consensus       204 sKtWI~nsp~aDl~vvwAr  222 (432)
T KOG0138|consen  204 SKTWITNSPMADLFVVWAR  222 (432)
T ss_pred             eeeeecCCcccceEEEEEe
Confidence            9999999999999999954

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=99.84  E-value=8.4e-21  Score=177.00  Aligned_cols=140  Identities=25%  Similarity=0.409  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHhhhhcccchhhh-----hhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         52 ETQQEFQALARKFCREEIIPVAAE-----HDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        52 ~~~~~l~~~~~~f~~~~~~p~~~~-----~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      ++|+++++.+++|+++++.|....     ++..+.+|.+++++|.+.||+++.+|+                        
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~------------------------   56 (380)
T cd01152           1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPK------------------------   56 (380)
T ss_pred             CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCCh------------------------
Confidence            478899999999999999886643     244567899999999999999999998                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        57 --------------------------------------------------------------------------------   56 (380)
T cd01152          57 --------------------------------------------------------------------------------   56 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH-h--------------------------hhcccceeeecCC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA-L--------------------------EASGLGAYCVTEP  259 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~--------------------------~g~~~~~~a~tEp  259 (312)
                                +|||.|.++.+++.+.|++++.|.++++. .                          .++.+.++++|||
T Consensus        57 ----------~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~  126 (380)
T cd01152          57 ----------EYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEP  126 (380)
T ss_pred             ----------hhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCC
Confidence                      66888888888888888888877765542 1                          1333568999999


Q ss_pred             CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      +.|||...+.|+|++++|||+|||+|.|||++.+||+++|.+.+++
T Consensus       127 ~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~  172 (380)
T cd01152         127 GAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDP  172 (380)
T ss_pred             CCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCC
Confidence            9999999999999999999999999999999999999999976543

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.84  E-value=2.9e-20  Score=174.15  Aligned_cols=147  Identities=37%  Similarity=0.588  Sum_probs=118.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhh---cCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDR---TGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~---~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      |++.+++++.++++.+++|+++++.|...+++.   .+.+|+++++++.+.|++++.+|+                    
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~--------------------   60 (393)
T COG1960           1 MDFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPE--------------------   60 (393)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCCh--------------------
Confidence            456677999999999999999999888777775   578899999999999999999998                    


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        61 --------------------------------------------------------------------------------   60 (393)
T COG1960          61 --------------------------------------------------------------------------------   60 (393)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------------------------Hhhhccc
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------------------------ALEASGL  251 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------------------------~~~g~~~  251 (312)
                                    +|||.+.+..+...+.|++++.+.+...                               +..|+.+
T Consensus        61 --------------e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~  126 (393)
T COG1960          61 --------------EYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELI  126 (393)
T ss_pred             --------------hhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchh
Confidence                          4455556655566666666655543321                               1225567


Q ss_pred             ceeeecCCCCCCCcCCce-eEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        252 GAYCVTEPGAGSDVNGVK-TKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       252 ~~~a~tEp~~gsd~~~~~-t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      .|+++|||++|||+.+++ |++++++|+|+|||+|.||||+..|||++|+++++++
T Consensus       127 ~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~  182 (393)
T COG1960         127 GAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA  182 (393)
T ss_pred             heeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCc
Confidence            799999999999999987 7777867779999999999999999999888776654

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=99.84  E-value=1.2e-20  Score=186.15  Aligned_cols=175  Identities=17%  Similarity=0.192  Sum_probs=118.3

Q ss_pred             cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHH-HHHHhhhhcccchhhhhhhcCCCC
Q psy10338          5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA-LARKFCREEIIPVAAEHDRTGEYP   83 (312)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~-~~~~f~~~~~~p~~~~~d~~~~~p   83 (312)
                      ++||.+++|+..+..+.-|..-.+..+..   .-       -...+++|++.+.+ .++.+++  ..+.....++.+.+|
T Consensus        43 ~te~~a~~a~~~~~~~~lf~G~~~~~~l~---~~-------p~~~l~~eeq~fl~~~v~~l~~--~~~e~~~~~~~~~~P  110 (774)
T PRK13026         43 DTEREAMEAGDVWWEGELFSGKPDWQKLH---SY-------PKPTLTAEEQAFIDNEVETLLT--MLDDWDIVQNRKDLP  110 (774)
T ss_pred             HHHHHHHhCCCcchhhhhcCCCCChhhcC---CC-------CccccCHHHHHHHHHHHHHHHh--hhhhhhhhhhhcCCC
Confidence            45666666666666555543322221111   00       12236666665554 6777765  122233345567899


Q ss_pred             HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHH
Q psy10338         84 WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL  163 (312)
Q Consensus        84 ~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l  163 (312)
                      +++|+++++.||+++.+|+                                                             
T Consensus       111 ~evw~~Lae~Gl~gl~IPe-------------------------------------------------------------  129 (774)
T PRK13026        111 PEVWDYLKKEGFFALIIPK-------------------------------------------------------------  129 (774)
T ss_pred             HHHHHHHHHCCCCcCCCCh-------------------------------------------------------------
Confidence            9999999999999999998                                                             


Q ss_pred             HHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchH
Q psy10338        164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIM  243 (312)
Q Consensus       164 ~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  243 (312)
                                                                           +|||.|++..+...++|++++.+.+.+
T Consensus       130 -----------------------------------------------------eyGGlG~s~~~~a~V~eela~~~~s~a  156 (774)
T PRK13026        130 -----------------------------------------------------EYGGKGFSAYANSTIVSKIATRSVSAA  156 (774)
T ss_pred             -----------------------------------------------------hhCCCCCCHHHHHHHHHHHHHhccchH
Confidence                                                                 557777777666677777765554432


Q ss_pred             H-----------------------------HhhhcccceeeecCCCCCCCcCCceeEEE-----EeCC---EEEEeeeee
Q psy10338        244 T-----------------------------ALEASGLGAYCVTEPGAGSDVNGVKTKAV-----KKGD---EWILNGQKM  286 (312)
Q Consensus       244 ~-----------------------------~~~g~~~~~~a~tEp~~gsd~~~~~t~A~-----~~~~---g~~l~G~k~  286 (312)
                      .                             +..|+.+.|+++|||++|||+.+++|+|+     ++|+   ||+|||+|.
T Consensus       157 ~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~  236 (774)
T PRK13026        157 VTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKR  236 (774)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEE
Confidence            1                             12255677999999999999999986654     4666   699999999


Q ss_pred             eeeCCCcccEEEEE-eccCC
Q psy10338        287 WITNGGVANWQNRT-RDFRY  305 (312)
Q Consensus       287 ~vs~~~~ad~~~v~-~~~~~  305 (312)
                      |||++..||+++|. +.+++
T Consensus       237 ~IT~A~~Ad~~~v~ar~~dp  256 (774)
T PRK13026        237 YITLAPVATVLGLAFKLRDP  256 (774)
T ss_pred             eecCccccCEEEEEEEeeCc
Confidence            99999999999765 43443

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.82  E-value=1.6e-19  Score=169.78  Aligned_cols=133  Identities=28%  Similarity=0.392  Sum_probs=105.4

Q ss_pred             HHHHHHhhhhcccchhhhhhhcCC--------CC---HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         58 QALARKFCREEIIPVAAEHDRTGE--------YP---WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        58 ~~~~~~f~~~~~~p~~~~~d~~~~--------~p---~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      ++.+++|+.+++.|.+.++|.+..        ||   .++|++|.+.||+++.+|+                        
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~------------------------   57 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPE------------------------   57 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCcc------------------------
Confidence            578999999999999888887654        99   6789999999999999998                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        58 --------------------------------------------------------------------------------   57 (407)
T cd01153          58 --------------------------------------------------------------------------------   57 (407)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH--------------------------hhhcccceeeecCCC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA--------------------------LEASGLGAYCVTEPG  260 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~--------------------------~~g~~~~~~a~tEp~  260 (312)
                                +|||.|.++.+...+.|+++++|.+++++                          ..|+.+.++++|||+
T Consensus        58 ----------e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~  127 (407)
T cd01153          58 ----------EYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPD  127 (407)
T ss_pred             ----------ccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCC
Confidence                      44555555555555666666555554432                          225557799999999


Q ss_pred             CCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcc----cEEEEEeccC
Q psy10338        261 AGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVA----NWQNRTRDFR  304 (312)
Q Consensus       261 ~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~a----d~~~v~~~~~  304 (312)
                      +|||+..++|+|+++ +|+|+|||+|.|+|++.+|    ++++|.++++
T Consensus       128 ~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~  176 (407)
T cd01153         128 AGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSE  176 (407)
T ss_pred             CCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeCC
Confidence            999999999999998 5789999999999999987    4667775543

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.81  E-value=2e-19  Score=168.50  Aligned_cols=137  Identities=26%  Similarity=0.344  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhhhhcccchhhhhhhc-----------CCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         54 QQEFQALARKFCREEIIPVAAEHDRT-----------GEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        54 ~~~l~~~~~~f~~~~~~p~~~~~d~~-----------~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      .++|++.+++|+++++.|...++|+.           ..+++++|++++++||+++.+|+                    
T Consensus         3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~--------------------   62 (394)
T cd01155           3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPE--------------------   62 (394)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCCh--------------------
Confidence            57899999999999999988777743           12346899999999999999998                    


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (394)
T cd01155          63 --------------------------------------------------------------------------------   62 (394)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccC-cchHH----------------------------Hhhhcccce
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGC-TGIMT----------------------------ALEASGLGA  253 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~-~~~~~----------------------------~~~g~~~~~  253 (312)
                                    +|||.|+++.+++.++|++++++ .+.++                            +..|+.+++
T Consensus        63 --------------~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~  128 (394)
T cd01155          63 --------------VSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSA  128 (394)
T ss_pred             --------------hhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEE
Confidence                          66888888888888888888764 21111                            111455678


Q ss_pred             eeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccC
Q psy10338        254 YCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFR  304 (312)
Q Consensus       254 ~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~  304 (312)
                      +++|||+ +|||..++.|+|++++|||+|||+|.||||+.+  +|+++|.+.++
T Consensus       129 ~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~  182 (394)
T cd01155         129 FAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTD  182 (394)
T ss_pred             EEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeC
Confidence            9999997 689999999999999999999999999999965  78999886544

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.80  E-value=4.2e-19  Score=173.58  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=53.2

Q ss_pred             HHhhhcccceeeecCCCCCCCcCCceeEEEEeCC-EEEEeeeeeeeeCCCcc----cEEEEEeccCC
Q psy10338        244 TALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVA----NWQNRTRDFRY  305 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~-g~~l~G~k~~vs~~~~a----d~~~v~~~~~~  305 (312)
                      .+..|++++++++|||++|||+..++|+|++++| +|+|||+|+|||++.++    ++++|++++++
T Consensus       175 ~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~  241 (622)
T PTZ00456        175 KLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPN  241 (622)
T ss_pred             HHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEecC
Confidence            3456888899999999999999999999999987 59999999999999884    57788866543

>PLN02876 acyl-CoA dehydrogenase

Probab=99.80  E-value=6e-19  Score=178.99  Aligned_cols=168  Identities=22%  Similarity=0.250  Sum_probs=125.3

Q ss_pred             CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcC-------CCC-HHHHHHHH-HcCCccccCCCCCCccCCcCCCcccEE
Q psy10338         48 SELNETQQEFQALARKFCREEIIPVAAEHDRTG-------EYP-WGIVKKAH-ELGLINGHIPASEQNMGQRASDTRGIT  118 (312)
Q Consensus        48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~-------~~p-~~~~~~l~-~~G~~~~~~P~~~~~~g~~~~~~~~v~  118 (312)
                      |.+|++|+++++.+++|+++++.|...++++..       .+| .+.|+++. ++||+++.+|+.....      .-.+.
T Consensus       400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~------~~~~~  473 (822)
T PLN02876        400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAAR------ARKLL  473 (822)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhh------hhhcc
Confidence            678999999999999999999988776665321       377 68888876 9999999999831000      00111


Q ss_pred             EcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHH
Q psy10338        119 FEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       119 f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~  198 (312)
                      |+|-                                                                            
T Consensus       474 ~~~~----------------------------------------------------------------------------  477 (822)
T PLN02876        474 FEDN----------------------------------------------------------------------------  477 (822)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            2211                                                                            


Q ss_pred             HHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------H----------------hhhc
Q psy10338        199 EIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------A----------------LEAS  249 (312)
Q Consensus       199 ~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------~----------------~~g~  249 (312)
                              ..+..-..+.+|||.|++..+...++|++++++.+...             +                ..|+
T Consensus       478 --------~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~  549 (822)
T PLN02876        478 --------KHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGK  549 (822)
T ss_pred             --------cccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCC
Confidence                    01112234558899999999999999999997643111             0                1155


Q ss_pred             ccceeeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCC--CcccEEEEEeccCC
Q psy10338        250 GLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG--GVANWQNRTRDFRY  305 (312)
Q Consensus       250 ~~~~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~--~~ad~~~v~~~~~~  305 (312)
                      .++++++|||+ +|||+.+++|+|++++|||+|||+|.|||++  ..||+++|.+.+++
T Consensus       550 ~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~  608 (822)
T PLN02876        550 IRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDF  608 (822)
T ss_pred             ceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCC
Confidence            56799999997 7899999999999999999999999999999  47999998866543

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.75  E-value=8.1e-18  Score=156.74  Aligned_cols=85  Identities=28%  Similarity=0.326  Sum_probs=71.1

Q ss_pred             ccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCCCCcCCce
Q psy10338        217 VSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAGSDVNGVK  269 (312)
Q Consensus       217 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~gsd~~~~~  269 (312)
                      +|||.|+++.+...++|++++.|.++++++.                           |. +.+.++|||++++ +..+.
T Consensus        44 ~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~-~~~~a~tE~~~~~-~~~~~  121 (377)
T cd01163          44 EYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLLAGPEQFRKRWFGRVLNGW-IFGNAVSERGSVR-PGTFL  121 (377)
T ss_pred             hhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCC-eEEEeecCCCCCC-CCCce
Confidence            6799999999999999999999988775432                           22 2356899998876 66778


Q ss_pred             eEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        270 TKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       270 t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      |++++++|||+|||+|.|||++.+|||++|+..+
T Consensus       122 ~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~  155 (377)
T cd01163         122 TATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD  155 (377)
T ss_pred             EEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence            8888889999999999999999999999998654

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>KOG0140|consensus

Probab=99.73  E-value=7.2e-18  Score=145.32  Aligned_cols=104  Identities=67%  Similarity=0.927  Sum_probs=94.9

Q ss_pred             cCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHh
Q psy10338         93 LGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALE  172 (312)
Q Consensus        93 ~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~  172 (312)
                      .|-.|++.-++..++|++.+++-.+.|+||+||.+|+||.+|.||.+++..|+..|+.+++.++|++++|+|.+.+|+.+
T Consensus       213 ~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~e  292 (408)
T KOG0140|consen  213 GDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALE  292 (408)
T ss_pred             CCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHH
Confidence            33344444447789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCcccchhhHHHHHHhhhH
Q psy10338        173 RKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       173 R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      |++||.||.+||.+|++|++++.-
T Consensus       293 RK~FG~~iA~hQ~vqF~LAdMA~~  316 (408)
T KOG0140|consen  293 RKAFGTPIANHQAVQFMLADMAIN  316 (408)
T ss_pred             HHHhCcChhhhhhHHHHHHHHHHH
Confidence            999999999999999998877663

>KOG0141|consensus

Probab=99.70  E-value=3.4e-18  Score=147.44  Aligned_cols=107  Identities=36%  Similarity=0.444  Sum_probs=99.7

Q ss_pred             HHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHH
Q psy10338         89 KAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATK  168 (312)
Q Consensus        89 ~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~  168 (312)
                      -+.|.|+.|.....+.+++|++++++++++|+|++||+++++|++++|+-++|.-|+.+|+.+++..+|+++.++|.+..
T Consensus       224 FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~  303 (421)
T KOG0141|consen  224 FIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFP  303 (421)
T ss_pred             EEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHHhhh
Confidence            34577888887777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338        169 YALERKAFGVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       169 ya~~R~~fg~~l~~~q~v~~~l~~~a~  195 (312)
                      |+.+|++||++++++|.+|.+++++-.
T Consensus       304 Y~~qR~afgk~ig~fQ~~QgklAdmyT  330 (421)
T KOG0141|consen  304 YAHQRKAFGKKIGHFQLLQGKLADMYT  330 (421)
T ss_pred             HHHHHHHhCCchhHHHHHHhHHHHHHH
Confidence            999999999999999999999765443

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.68  E-value=7.9e-17  Score=106.07  Aligned_cols=51  Identities=41%  Similarity=0.706  Sum_probs=46.1

Q ss_pred             eeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       253 ~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      ++|+|||++|+|+..++|+|++++++|+|||+|.||++++.||+++|++++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~   51 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART   51 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence            689999999999999999999999999999999999999999999999765

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>KOG0137|consensus

Probab=99.68  E-value=1.3e-16  Score=148.24  Aligned_cols=93  Identities=35%  Similarity=0.564  Sum_probs=88.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +..++|++++.+++|.|++|.||.+|+||.+|.|+++++.+++.+|+.+++.++|.|+++++.+.+|+..|.||+.+|.+
T Consensus       277 ~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~  356 (634)
T KOG0137|consen  277 PEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHD  356 (634)
T ss_pred             chhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhh
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +..+|.+++.+..
T Consensus       357 ~~l~q~k~~~m~~  369 (634)
T KOG0137|consen  357 FGLIQEKVAEMAS  369 (634)
T ss_pred             hhhHHHHHHHHHH
Confidence            9999998654443

>PLN02636 acyl-coenzyme A oxidase

Probab=99.67  E-value=3.2e-16  Score=154.79  Aligned_cols=60  Identities=28%  Similarity=0.465  Sum_probs=54.5

Q ss_pred             HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCCCc-ccEEEEEeccC
Q psy10338        245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNGGV-ANWQNRTRDFR  304 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~~~-ad~~~v~~~~~  304 (312)
                      +..++.++|+|+|||++|||+.+++|+|+++  +|+|+||     |+|+||+|+.. ||+++|++.+.
T Consensus       168 ~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~  235 (686)
T PLN02636        168 IDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLK  235 (686)
T ss_pred             HhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEec
Confidence            4467888999999999999999999999998  7899999     99999999975 99999997664

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.66  E-value=3.1e-16  Score=145.81  Aligned_cols=88  Identities=15%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             ccCCCChhHhHHHHHHHHHHccCcchHHHhhhcc-----cc--------eeeecCCC-CCCCcCCceeEEEEeCCEEEEe
Q psy10338        217 VSGGLELSVFDGCLVAEELAYGCTGIMTALEASG-----LG--------AYCVTEPG-AGSDVNGVKTKAVKKGDEWILN  282 (312)
Q Consensus       217 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~-----~~--------~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~  282 (312)
                      +|||.|+++.+...+.|++++.|++++++.....     +.        ..-..+++ ..++..++.|+|++++|||+||
T Consensus        44 e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~A~~~~~gy~ln  123 (370)
T cd01159          44 RYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGPDTLLAGSYAPGGRAERVDGGYRVS  123 (370)
T ss_pred             hcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCceEEeeecCCceeEEeCCeEEEe
Confidence            7799999999999999999999999876432110     00        11123443 2233456788999999999999


Q ss_pred             eeeeeeeCCCcccEEEEEeccC
Q psy10338        283 GQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       283 G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |+|.|||++.+|||++|.++++
T Consensus       124 G~K~~it~~~~ad~~~v~a~~~  145 (370)
T cd01159         124 GTWPFASGCDHADWILVGAIVE  145 (370)
T ss_pred             ccccCccCCCcCceeEeeeECC
Confidence            9999999999999999996654

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.64  E-value=1.8e-15  Score=142.67  Aligned_cols=59  Identities=27%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             ccceeeecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEeccCCCCCC
Q psy10338        250 GLGAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFRYEKPG  309 (312)
Q Consensus       250 ~~~~~a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~~  309 (312)
                      .++++++|||++|||+.+++|+|+++ +|+|+|||+|+|+|++ .||+++|+++++++.++
T Consensus       147 ~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~  206 (418)
T cd01154         147 LLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAG  206 (418)
T ss_pred             hhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCC
Confidence            68899999999999999999999999 8999999999999999 99999999877655443

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.57  E-value=1.9e-14  Score=137.41  Aligned_cols=104  Identities=21%  Similarity=0.196  Sum_probs=86.9

Q ss_pred             HHHHHHhcc-cccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hc
Q psy10338        199 EIQLMLLGV-HNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------AS  249 (312)
Q Consensus       199 ~~~~~~~~~-g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~  249 (312)
                      .+.+.+.++ ||.++.+|++|||.|++..+.+.++|++++.+.+.+....                            |+
T Consensus        54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe  133 (520)
T PTZ00457         54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT  133 (520)
T ss_pred             HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence            344457788 9999999999999999999999999999997766442210                            44


Q ss_pred             ccceeeecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        250 GLGAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       250 ~~~~~a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .+++++++| ++|||+..++|+|+++ +|+|+|||+|.|+ ++..||+++|+++++
T Consensus       134 ~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~  187 (520)
T PTZ00457        134 IMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTL  187 (520)
T ss_pred             cEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecC
Confidence            456999988 8999999999999986 5689999999965 899999999997654

>KOG0137|consensus

Probab=99.56  E-value=6.6e-15  Score=137.01  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------
Q psy10338        195 IFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------  247 (312)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------  247 (312)
                      -.+...++.+++.|.+++++|.+|+|.|+.+.++..+.|.++-+|.+.+..+.                           
T Consensus       109 ~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~La  188 (634)
T KOG0137|consen  109 KIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLA  188 (634)
T ss_pred             ccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhh
Confidence            34667889999999999999999999999999999999999987777664332                           


Q ss_pred             -hcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        248 -ASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       248 -g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                       |..+++||+|||..|||..+.+|+|+..  ++.|+|||.|.||||+..||+++|++.+.
T Consensus       189 Sg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~  248 (634)
T KOG0137|consen  189 SGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTE  248 (634)
T ss_pred             cCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccc
Confidence             5566799999999999999999999874  56899999999999999999999996654

>PLN02312 acyl-CoA oxidase

Probab=99.51  E-value=7.8e-14  Score=137.73  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=54.4

Q ss_pred             HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCC-CcccEEEEEeccCC
Q psy10338        245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWQNRTRDFRY  305 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~-~~ad~~~v~~~~~~  305 (312)
                      +..++.++|+++|||++|||+.+++|+|+++  +|+|+||     |+|+||+|+ ..||+++|++.+..
T Consensus       180 ~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~  248 (680)
T PLN02312        180 TEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHI  248 (680)
T ss_pred             HhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECC
Confidence            4457889999999999999999999999998  4789999     799999998 79999999976653

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=99.45  E-value=1.6e-13  Score=127.84  Aligned_cols=85  Identities=26%  Similarity=0.380  Sum_probs=79.2

Q ss_pred             CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338        111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI  190 (312)
Q Consensus       111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l  190 (312)
                      +...+++.||||+||+++++|.+++||.+++..++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.||+++
T Consensus       203 g~~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~l  282 (378)
T TIGR03203       203 GLHAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRA  282 (378)
T ss_pred             CCceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             HHhhh
Q psy10338        191 QYVSI  195 (312)
Q Consensus       191 ~~~a~  195 (312)
                      +....
T Consensus       283 Adm~~  287 (378)
T TIGR03203       283 ADMFV  287 (378)
T ss_pred             HHHHH
Confidence            55444

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=99.43  E-value=1.5e-12  Score=118.85  Aligned_cols=95  Identities=41%  Similarity=0.612  Sum_probs=86.7

Q ss_pred             CCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy10338        104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH  183 (312)
Q Consensus       104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~  183 (312)
                      +..+|+++.+++.+.|+||+||.+++++..+.|+......+...|+..++..+|+++++++.+++|+++|.+||.++.++
T Consensus       150 ~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~  229 (327)
T cd00567         150 WDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEF  229 (327)
T ss_pred             cccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence            45567888889999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhhhHHH
Q psy10338        184 QGMYLKIQYVSIFER  198 (312)
Q Consensus       184 q~v~~~l~~~a~~~~  198 (312)
                      |.+|+++........
T Consensus       230 ~~vq~~la~~~~~~~  244 (327)
T cd00567         230 QAVQFKLADMAAELE  244 (327)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999776655443

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=99.41  E-value=2.4e-13  Score=135.23  Aligned_cols=93  Identities=18%  Similarity=0.279  Sum_probs=84.6

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC---CccHHHHHhhhhccC-hhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE---GAGFKIAMDTFDKTR-PPVAAGAVGLAQRCLDEATKYALERKAFGV  178 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~---g~G~~~~~~~l~~~R-~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~  178 (312)
                      ...++|++ ..++++.|+||+||.+++||.+   |+||.+++..|+.+| +.+++.++|+++.+++.+++|+++|+|||+
T Consensus       286 ~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~  364 (777)
T PRK09463        286 RHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKL  364 (777)
T ss_pred             cccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45567777 5688999999999999999974   899999999999999 899999999999999999999999999999


Q ss_pred             CcccchhhHHHHHHhhhH
Q psy10338        179 PIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       179 ~l~~~q~v~~~l~~~a~~  196 (312)
                      ||+++|.||++++.....
T Consensus       365 pIg~fQaVQ~~LAdma~~  382 (777)
T PRK09463        365 PIGKFEGIEEPLARIAGN  382 (777)
T ss_pred             ChhhcHHHHHHHHHHHHH
Confidence            999999999997765553

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=99.41  E-value=4.9e-13  Score=132.60  Aligned_cols=92  Identities=18%  Similarity=0.329  Sum_probs=83.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC---CccHHHHHhhhhccC-hhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE---GAGFKIAMDTFDKTR-PPVAAGAVGLAQRCLDEATKYALERKAFGV  178 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~---g~G~~~~~~~l~~~R-~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~  178 (312)
                      ...++|++.. ++++.||||+||.+++||.+   |+||.+++..|+.+| +.+++.++|+++.|++.+++|+++|+|||+
T Consensus       285 ~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~  363 (774)
T PRK13026        285 RHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM  363 (774)
T ss_pred             cccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3455677753 58999999999999999975   899999999999999 899999999999999999999999999999


Q ss_pred             CcccchhhHHHHHHhhh
Q psy10338        179 PIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       179 ~l~~~q~v~~~l~~~a~  195 (312)
                      ||+++|.||++++....
T Consensus       364 pIg~fQ~Vq~~LAdma~  380 (774)
T PRK13026        364 PIGQFEGVQEALARIAG  380 (774)
T ss_pred             CccccHHHHHHHHHHHH
Confidence            99999999999887765

>PLN02636 acyl-coenzyme A oxidase

Probab=99.39  E-value=5.3e-13  Score=132.16  Aligned_cols=92  Identities=26%  Similarity=0.408  Sum_probs=84.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA  166 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a  166 (312)
                      ..+++|+++.+++.+.||||+||.+++||.                +++||.++...|..+|+.+++.++|+++++++.+
T Consensus       273 ~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iA  352 (686)
T PLN02636        273 CGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIA  352 (686)
T ss_pred             CCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999953                2579999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCC------cccchhhHHHHHHhh
Q psy10338        167 TKYALERKAFGVP------IAAHQGMYLKIQYVS  194 (312)
Q Consensus       167 ~~ya~~R~~fg~~------l~~~q~v~~~l~~~a  194 (312)
                      ++|+.+|+|||.|      |.++|.+|+++....
T Consensus       353 vrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~l  386 (686)
T PLN02636        353 IRYSLLRQQFGPPKQPEISILDYQSQQHKLMPML  386 (686)
T ss_pred             HHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHH
Confidence            9999999999999      999999999955433

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.37  E-value=1.4e-12  Score=122.14  Aligned_cols=94  Identities=46%  Similarity=0.622  Sum_probs=87.6

Q ss_pred             CCcc-CCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        104 EQNM-GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       104 ~~~~-g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .... |+++.++++++|+||+||.++++|+++.||.+++..++.+|+.+++.++|.++.+++.+++|+++|++|++++.+
T Consensus       207 ~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~  286 (393)
T COG1960         207 ILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIAD  286 (393)
T ss_pred             ccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhh
Confidence            3445 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       287 ~~~vq~~la~~~~~~  301 (393)
T COG1960         287 FQLVQFKLADMAAEL  301 (393)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999977665543

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=99.36  E-value=1.8e-12  Score=120.88  Aligned_cols=94  Identities=76%  Similarity=1.088  Sum_probs=87.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .+.++|+++.+++++.|+||+||.++++|.++.||.++...++..|+.+++.++|+++++++.+++|+++|.+||+++.+
T Consensus       196 ~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~  275 (378)
T cd01157         196 KELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAE  275 (378)
T ss_pred             cccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|+++......
T Consensus       276 ~q~vq~~la~~~~~  289 (378)
T cd01157         276 HQAVSFMLADMAMK  289 (378)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999997765544

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=99.36  E-value=1.5e-12  Score=121.09  Aligned_cols=95  Identities=36%  Similarity=0.530  Sum_probs=87.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +++.+|+++.+++++.|+||+||+++++|.++.||..+...++.+|+.+++..+|+++++++.+++|+++|++||+|+.+
T Consensus       193 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~  272 (372)
T TIGR03207       193 RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSA  272 (372)
T ss_pred             cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhh
Confidence            46678889989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.||++++......
T Consensus       273 ~q~v~~~la~~~~~~  287 (372)
T TIGR03207       273 FQGVSHPLADAETQV  287 (372)
T ss_pred             hHhHHHHHHHHHHHH
Confidence            999999977655543

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=99.36  E-value=2e-12  Score=120.28  Aligned_cols=101  Identities=35%  Similarity=0.431  Sum_probs=91.6

Q ss_pred             cccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy10338         97 NGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF  176 (312)
Q Consensus        97 ~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~f  176 (312)
                      ++.+...++.+|+++.+++++.|+||+||.+++||.++.|+......+...|+.+++..+|+++++++.+++|+++|.+|
T Consensus       186 gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~  265 (372)
T cd01160         186 GFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAF  265 (372)
T ss_pred             CeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            33444457889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccchhhHHHHHHhhhHH
Q psy10338        177 GVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       177 g~~l~~~q~v~~~l~~~a~~~  197 (312)
                      |+++.++|.+|+++.......
T Consensus       266 g~~i~~~q~vq~~la~~~~~~  286 (372)
T cd01160         266 GKTLAQLQVVRHKIAELATKV  286 (372)
T ss_pred             CccHHhhHHHHHHHHHHHHHH
Confidence            999999999999987665544

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PLN02312 acyl-CoA oxidase

Probab=99.35  E-value=1.1e-12  Score=129.57  Aligned_cols=90  Identities=24%  Similarity=0.412  Sum_probs=83.5

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHH
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE  165 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~  165 (312)
                      +..+++|+++.+++.+.||||+||.+++||.                +++||.+++..|..+|+.+++.++|+++++++.
T Consensus       277 ~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~i  356 (680)
T PLN02312        277 DCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAI  356 (680)
T ss_pred             cCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999984                578999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCC----C---cccchhhHHHHH
Q psy10338        166 ATKYALERKAFGV----P---IAAHQGMYLKIQ  191 (312)
Q Consensus       166 a~~ya~~R~~fg~----~---l~~~q~v~~~l~  191 (312)
                      +++|+++|+|||.    |   |.++|.+|+++.
T Consensus       357 AvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa  389 (680)
T PLN02312        357 AIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLL  389 (680)
T ss_pred             HHHHHHhCeecCCCCCCccchHhhhHHHHHHHH
Confidence            9999999999995    4   999999999965

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=99.34  E-value=2.6e-12  Score=121.13  Aligned_cols=95  Identities=39%  Similarity=0.453  Sum_probs=88.4

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++.+|+++.+++++.|+||+||++++||.++.|+......++..|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       226 ~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~  305 (410)
T PTZ00461        226 KIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISN  305 (410)
T ss_pred             CCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHh
Confidence            46788999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       306 ~q~vq~~la~~~~~l  320 (410)
T PTZ00461        306 FGQIQRYIAEGYADT  320 (410)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=99.34  E-value=2.3e-12  Score=120.27  Aligned_cols=95  Identities=27%  Similarity=0.409  Sum_probs=88.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +++++|+++.+++.+.|+||+||+++++|.++.|+..+...++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       197 ~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~  276 (381)
T PRK12341        197 PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGH  276 (381)
T ss_pred             ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHH
Confidence            46788999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       277 ~~~v~~~la~~~~~~  291 (381)
T PRK12341        277 NQLIQEKLTLMAIKI  291 (381)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999987666543

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=99.34  E-value=2.6e-12  Score=119.95  Aligned_cols=96  Identities=29%  Similarity=0.412  Sum_probs=89.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +++++|+++.+++++.||||+||+++++|.++.|+......++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       196 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~  275 (380)
T PRK03354        196 KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGR  275 (380)
T ss_pred             cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHH
Confidence            57889999999999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHHH
Q psy10338        183 HQGMYLKIQYVSIFER  198 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~~  198 (312)
                      +|.+|+++........
T Consensus       276 ~q~vq~~la~~~~~~~  291 (380)
T PRK03354        276 FQLIQEKFAHMAIKLN  291 (380)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999877666543

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=99.34  E-value=2.9e-12  Score=119.39  Aligned_cols=95  Identities=43%  Similarity=0.609  Sum_probs=88.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .+..+|+++.+++++.||||+||.++++|.++.|+.+....+...|+.+++..+|.++++++.+++|+++|.+||+|+.+
T Consensus       192 ~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~  271 (375)
T cd01162         192 NEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLAD  271 (375)
T ss_pred             cccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHh
Confidence            45678999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       272 ~~~vq~~la~~~~~l  286 (375)
T cd01162         272 FQALQFKLADMATEL  286 (375)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.33  E-value=2.9e-12  Score=120.14  Aligned_cols=96  Identities=32%  Similarity=0.438  Sum_probs=87.9

Q ss_pred             CCCccCCcC--CCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338        103 SEQNMGQRA--SDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI  180 (312)
Q Consensus       103 ~~~~~g~~~--~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l  180 (312)
                      .++++|+++  ..++++.|+||+||+++++|.+++|+.+....++.+|+..++.++|+++++++.+++|+++|.+||+|+
T Consensus       209 ~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i  288 (394)
T cd01155         209 PLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKL  288 (394)
T ss_pred             cccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcH
Confidence            577889997  467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhHHH
Q psy10338        181 AAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       181 ~~~q~v~~~l~~~a~~~~  198 (312)
                      .++|.+|++++.......
T Consensus       289 ~~~q~vq~~la~~~~~l~  306 (394)
T cd01155         289 AQHGVVAHWIAKSRIEIE  306 (394)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999876655433

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=99.33  E-value=3.3e-12  Score=118.97  Aligned_cols=95  Identities=37%  Similarity=0.522  Sum_probs=88.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.|+||+||+++++|..+.|+.+++..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       195 ~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~  274 (376)
T cd01156         195 KLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGE  274 (376)
T ss_pred             ccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       275 ~~~v~~~la~~~~~l  289 (376)
T cd01156         275 FQLVQGKLADMYTRL  289 (376)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=99.33  E-value=3.4e-12  Score=120.27  Aligned_cols=95  Identities=37%  Similarity=0.623  Sum_probs=88.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.|+||+||+++++|.++.|+..++..++.+|+.+++.++|+++++++.+++|+++|.+||+++.+
T Consensus       223 ~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~  302 (409)
T cd01161         223 PEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHE  302 (409)
T ss_pred             cccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       303 ~q~vq~~la~~~~~~  317 (409)
T cd01161         303 FGLIQEKLANMAILQ  317 (409)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=99.32  E-value=4.1e-12  Score=119.54  Aligned_cols=97  Identities=37%  Similarity=0.522  Sum_probs=89.4

Q ss_pred             CCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy10338        100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVP  179 (312)
Q Consensus       100 ~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~  179 (312)
                      +...++++|+++.+++++.|+||+||+++++|..+.|+......++..|+.+++..+|+++++++.+++|+++|.+||+|
T Consensus       218 ~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~p  297 (404)
T PLN02519        218 TAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRP  297 (404)
T ss_pred             ccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCcc
Confidence            33357788999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhH
Q psy10338        180 IAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       180 l~~~q~v~~~l~~~a~~  196 (312)
                      +.++|.+|++++.....
T Consensus       298 l~~~~~v~~~la~~~~~  314 (404)
T PLN02519        298 IGEFQFIQGKLADMYTS  314 (404)
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            99999999997766554

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.32  E-value=3.7e-12  Score=122.57  Aligned_cols=90  Identities=24%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.++++|.|+||   .+++||++++|+.++...++.+|+..++.++|+++++++.+++|+++|++||++|++
T Consensus       257 l~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~  333 (538)
T PRK11561        257 LKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIE  333 (538)
T ss_pred             ccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccc
Confidence            46789999999999999999   389999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|++++....
T Consensus       334 ~q~vq~~LAdm~~  346 (538)
T PRK11561        334 QPLMRQVLSRMAL  346 (538)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999765444

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=99.30  E-value=7.6e-12  Score=117.01  Aligned_cols=96  Identities=33%  Similarity=0.473  Sum_probs=87.5

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.|+||+||++++++. +.|+..+...++..|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       202 ~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~  280 (386)
T cd01151         202 IQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAA  280 (386)
T ss_pred             CCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhh
Confidence            467889999999999999999999999986 5799888899999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHHHH
Q psy10338        183 HQGMYLKIQYVSIFERE  199 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~~~  199 (312)
                      +|.+|+++.........
T Consensus       281 ~q~vq~~la~~~~~~ea  297 (386)
T cd01151         281 FQLVQKKLADMLTEIAL  297 (386)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999998766665443

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.30  E-value=5.4e-12  Score=124.24  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=82.6

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCcccc------CCc----c-HHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLG------EGA----G-FKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL  171 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~------~g~----G-~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~  171 (312)
                      ..+++|+++.+++.+.||||+||.+++||.      +|.    | +......+..+|+.+++.++|.++++++.+++|++
T Consensus       221 ~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~  300 (646)
T PTZ00460        221 IGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSI  300 (646)
T ss_pred             cccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999996      452    5 78888999999999999999999999999999999


Q ss_pred             hhccCCC------CcccchhhHHHHHHh
Q psy10338        172 ERKAFGV------PIAAHQGMYLKIQYV  193 (312)
Q Consensus       172 ~R~~fg~------~l~~~q~v~~~l~~~  193 (312)
                      +|+|||+      ||.++|.+|+++...
T Consensus       301 ~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~  328 (646)
T PTZ00460        301 YRQQFTNDNKQENSVLEYQTQQQKLLPL  328 (646)
T ss_pred             ccccCCCCCCCCCcHhhhHHHHHHHHHH
Confidence            9999997      999999999996443

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.29  E-value=3.5e-12  Score=125.40  Aligned_cols=89  Identities=22%  Similarity=0.277  Sum_probs=83.3

Q ss_pred             CCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHH
Q psy10338        104 EQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT  167 (312)
Q Consensus       104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~  167 (312)
                      .+++|+++.+++.+.||||+||.+++||.                ++.|+..+...+..+|+.+++.++|.++++++.++
T Consensus       229 ~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi  308 (610)
T cd01150         229 GPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAI  308 (610)
T ss_pred             ccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999986                67789999999999999999999999999999999


Q ss_pred             HHHHhhccCCCC-------cccchhhHHHHHH
Q psy10338        168 KYALERKAFGVP-------IAAHQGMYLKIQY  192 (312)
Q Consensus       168 ~ya~~R~~fg~~-------l~~~q~v~~~l~~  192 (312)
                      +|++.|+|||.+       |.++|.+|+++..
T Consensus       309 ~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~  340 (610)
T cd01150         309 RYSAVRRQFGPKPSDPEVQILDYQLQQYRLFP  340 (610)
T ss_pred             HHHHeeeecCCCCCCCcchhhccHhHHHHHHH
Confidence            999999999999       9999999999643

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>KOG0138|consensus

Probab=99.29  E-value=1.8e-12  Score=111.96  Aligned_cols=104  Identities=34%  Similarity=0.489  Sum_probs=92.9

Q ss_pred             HHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHH
Q psy10338         91 HELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYA  170 (312)
Q Consensus        91 ~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya  170 (312)
                      -+.|.-|+.-|+...++++|.+.++.+.+|+|+||+|++|.... +|.-....|+..|+++++..+|+++.|++.+.+|+
T Consensus       234 ~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~  312 (432)
T KOG0138|consen  234 LEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYT  312 (432)
T ss_pred             EecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc-ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999996542 34445678999999999999999999999999999


Q ss_pred             HhhccCCCCcccchhhHHHHHHhhh
Q psy10338        171 LERKAFGVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       171 ~~R~~fg~~l~~~q~v~~~l~~~a~  195 (312)
                      .+|+|||+|+..+|.+|.+++.+-.
T Consensus       313 ldRkQFG~PLAanQL~Q~Kladmlt  337 (432)
T KOG0138|consen  313 LDRKQFGRPLAANQLIQKKLADMLT  337 (432)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHH
Confidence            9999999999999999999776544

>PLN02876 acyl-CoA dehydrogenase

Probab=99.27  E-value=1.3e-11  Score=125.68  Aligned_cols=95  Identities=34%  Similarity=0.475  Sum_probs=87.0

Q ss_pred             CCCccCCcCC--CcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338        103 SEQNMGQRAS--DTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI  180 (312)
Q Consensus       103 ~~~~~g~~~~--~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l  180 (312)
                      ++.++|+++.  .++++.|+||+||.++++|.+++|+..++..++.+|+.+++.++|+++++++.+++|+++|++||+++
T Consensus       633 ~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i  712 (822)
T PLN02876        633 PLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLI  712 (822)
T ss_pred             ccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCch
Confidence            5677888874  47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhHH
Q psy10338        181 AAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       181 ~~~q~v~~~l~~~a~~~  197 (312)
                      .++|.+|++++......
T Consensus       713 ~~~q~vq~~la~~~~~l  729 (822)
T PLN02876        713 AQHGSFLSDLAKCRVEL  729 (822)
T ss_pred             hhCHHHHHHHHHHHHHH
Confidence            99999999977665543

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=99.22  E-value=2.8e-11  Score=112.52  Aligned_cols=95  Identities=52%  Similarity=0.737  Sum_probs=88.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++.+|+++..++++.|+||+||+++++|..+.|+......++.+|+.+++.++|+++++++.+++|+++|.+|+.++.+
T Consensus       192 ~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~  271 (373)
T cd01158         192 KEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIAD  271 (373)
T ss_pred             cccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHH
Confidence            46778999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       272 ~~~v~~~la~~~~~l  286 (373)
T cd01158         272 FQGIQFKLADMATEI  286 (373)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.21  E-value=4.2e-11  Score=113.08  Aligned_cols=93  Identities=27%  Similarity=0.453  Sum_probs=85.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.++++|+|+||+   ++++|.+++||.+++..++.+|+.+++.++|.++++++.+++|+++|.+||+++.+
T Consensus       232 ~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~  308 (418)
T cd01154         232 LKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLID  308 (418)
T ss_pred             cccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhh
Confidence            456889999999999999983   89999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHHH
Q psy10338        183 HQGMYLKIQYVSIFER  198 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~~  198 (312)
                      +|.+|++++.......
T Consensus       309 ~~~v~~~La~~~~~~e  324 (418)
T cd01154         309 HPLMRRDLAEMEVDVE  324 (418)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999877665443

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>KOG1469|consensus

Probab=99.21  E-value=6.1e-11  Score=101.17  Aligned_cols=103  Identities=22%  Similarity=0.325  Sum_probs=77.8

Q ss_pred             cccccccccc---ccCCCChhHhHHHHHHHHHHccCcchHH-----------------------------Hhhhccccee
Q psy10338        207 VHNCNVFLVS---VSGGLELSVFDGCLVAEELAYGCTGIMT-----------------------------ALEASGLGAY  254 (312)
Q Consensus       207 ~g~~~~~~p~---~~GG~g~~~~~~~~v~e~l~~~~~~~~~-----------------------------~~~g~~~~~~  254 (312)
                      .|++.+.+|.   .| |.|++..++..+.|.+++....--.                             ++.|...+||
T Consensus        39 eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irScF  117 (392)
T KOG1469|consen   39 EGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSCF  117 (392)
T ss_pred             cchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceeeE
Confidence            4555555553   45 4799999999999999875422111                             1115566799


Q ss_pred             eecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccCCC-CCCC
Q psy10338        255 CVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFRYE-KPGH  310 (312)
Q Consensus       255 a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~~~-~~~~  310 (312)
                      |+|||+ +.||..++.++-+++++.|+|||+|+|+||+.+  |.+.++..++++. .+.|
T Consensus       118 aMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rh  177 (392)
T KOG1469|consen  118 AMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRH  177 (392)
T ss_pred             eecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchh
Confidence            999998 678999999999999999999999999999955  6777777776655 4444

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.20  E-value=3.8e-11  Score=92.22  Aligned_cols=52  Identities=38%  Similarity=0.604  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCC
Q psy10338         51 NETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA  102 (312)
Q Consensus        51 ~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~  102 (312)
                      |+++++|++.+++|+++++.|...++|+.+.+|+++|+++++.||+++.+|+
T Consensus         1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~   52 (113)
T PF02771_consen    1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPE   52 (113)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCG
T ss_pred             CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccc
Confidence            6899999999999999999999999988889999999999999999999997

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>PLN02526 acyl-coenzyme A oxidase

Probab=99.19  E-value=4.7e-11  Score=112.60  Aligned_cols=93  Identities=30%  Similarity=0.374  Sum_probs=84.3

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.|+||+||++++++..+ |+......++.+|+.+++..+|+++++++.+++|+++|.+||+++.+
T Consensus       218 ~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~  296 (412)
T PLN02526        218 IENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAA  296 (412)
T ss_pred             CCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhh
Confidence            45688999999999999999999999998764 78888888999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|+++......
T Consensus       297 ~q~vq~~la~~~~~  310 (412)
T PLN02526        297 FQINQEKLVRMLGN  310 (412)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999997665443

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=99.19  E-value=4.9e-11  Score=111.87  Aligned_cols=85  Identities=24%  Similarity=0.328  Sum_probs=77.9

Q ss_pred             CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338        111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI  190 (312)
Q Consensus       111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l  190 (312)
                      +.+++++.|+||+||.++++|.+++|+.+++..++.+|+++++  +|+++++++.+++|+++|++||+||.++|.+|+++
T Consensus       207 ~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~l  284 (395)
T TIGR03204       207 GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKL  284 (395)
T ss_pred             CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHH
Confidence            5678899999999999999999999999999999999999886  79999999999999999999999999999999997


Q ss_pred             HHhhhHH
Q psy10338        191 QYVSIFE  197 (312)
Q Consensus       191 ~~~a~~~  197 (312)
                      +......
T Consensus       285 a~~~~~~  291 (395)
T TIGR03204       285 AAVEIEL  291 (395)
T ss_pred             HHHHHHH
Confidence            6655543

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.15  E-value=1.6e-10  Score=108.89  Aligned_cols=93  Identities=25%  Similarity=0.323  Sum_probs=84.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVP---  179 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~---  179 (312)
                      .++++|+++.+++++.|+||+||   ++|.++.|+.+....++.+|+.+++.++|+++++++.+++|+++|.+||+|   
T Consensus       207 ~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~  283 (407)
T cd01153         207 IEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKA  283 (407)
T ss_pred             chhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCcc
Confidence            45788999999999999999999   899999999999999999999999999999999999999999999999999   


Q ss_pred             -----cccchhhHHHHHHhhhHHH
Q psy10338        180 -----IAAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       180 -----l~~~q~v~~~l~~~a~~~~  198 (312)
                           +.++|.+|+++........
T Consensus       284 ~~~~~~~~~~~iq~~la~~~a~~~  307 (407)
T cd01153         284 APAVTIIHHPDVRRSLMTQKAYAE  307 (407)
T ss_pred             ccccccccCHHHHHHHHHHHHHHH
Confidence                 7777888888776666543

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.10  E-value=2.6e-10  Score=112.12  Aligned_cols=87  Identities=25%  Similarity=0.364  Sum_probs=80.0

Q ss_pred             CCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccC-------
Q psy10338        104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF-------  176 (312)
Q Consensus       104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~f-------  176 (312)
                      .+++|+++.+++++.|+|   +.+++||++++|+..++..++.+|+.+++.++|+++++++.+++|+++|.||       
T Consensus       277 ~~kmG~~gs~t~~l~fd~---~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~  353 (622)
T PTZ00456        277 EKKMGIKGSSTCQLSFEN---SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTK  353 (622)
T ss_pred             ccccCCCCCceEEEEeeC---hhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Confidence            367899999999999998   4689999999999999999999999999999999999999999999999984       


Q ss_pred             -----CCCcccchhhHHHHHHh
Q psy10338        177 -----GVPIAAHQGMYLKIQYV  193 (312)
Q Consensus       177 -----g~~l~~~q~v~~~l~~~  193 (312)
                           +++|+++|.||+++...
T Consensus       354 ~~~~~~~~I~~~~~Vr~~L~~~  375 (622)
T PTZ00456        354 EPEKPADRIICHANVRQNILFA  375 (622)
T ss_pred             cccCCCCccccCHHHHHHHHHH
Confidence                 78999999999996443

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.03  E-value=1.1e-09  Score=105.50  Aligned_cols=53  Identities=23%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             cceeeecCCCCCCCcCCceeEEEE-eCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        251 LGAYCVTEPGAGSDVNGVKTKAVK-KGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       251 ~~~~a~tEp~~gsd~~~~~t~A~~-~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      +.++++|||++|||+.+++|+|++ ++|+|+|||+|+||| +..||+++|+++++
T Consensus       179 ~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~  232 (538)
T PRK11561        179 LIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK  232 (538)
T ss_pred             eeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC
Confidence            458999999999999999999999 467899999999999 68999999997653

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.02  E-value=5.7e-10  Score=104.04  Aligned_cols=94  Identities=21%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhc-cCCC---
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERK-AFGV---  178 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~-~fg~---  178 (312)
                      .++++|+++.+++++.|+||+||+++++|.++.|+. ....+...|+.+++.++|+++++++.+++|+++|. +|++   
T Consensus       177 ~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~  255 (377)
T cd01163         177 DWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGA  255 (377)
T ss_pred             CcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCc
Confidence            467889999999999999999999999999988875 23344567889999999999999999999999995 7876   


Q ss_pred             -CcccchhhHHHHHHhhhHH
Q psy10338        179 -PIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       179 -~l~~~q~v~~~l~~~a~~~  197 (312)
                       ++.++|.+|+++.......
T Consensus       256 ~~~~~~~~v~~~la~~~~~l  275 (377)
T cd01163         256 ESARDDPYVQQVVGDLAARL  275 (377)
T ss_pred             cccccCcHHHHHHHHHHHHH
Confidence             5789999999977665543

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PLN02443 acyl-coenzyme A oxidase

Probab=98.98  E-value=1.1e-09  Score=108.35  Aligned_cols=84  Identities=24%  Similarity=0.362  Sum_probs=70.6

Q ss_pred             CCCccC---CcCCCcccEEEcceecCCCCccccC------CccH------HHHHhhhhccChhHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMG---QRASDTRGITFEDVRVPKENVLLGE------GAGF------KIAMDTFDKTRPPVAAGAVGLAQRCLDEAT  167 (312)
Q Consensus       103 ~~~~~g---~~~~~~~~v~f~dv~Vp~~~llG~~------g~G~------~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~  167 (312)
                      ..+++|   .++.+++.+.|+||+||.+++||..      |..+      ......+..+|+.+++.++|.++++++.++
T Consensus       225 ~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAv  304 (664)
T PLN02443        225 IGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIAT  304 (664)
T ss_pred             cccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778   5568899999999999999999864      3322      244567888999999999999999999999


Q ss_pred             HHHHhhccCCCCcc--cchhh
Q psy10338        168 KYALERKAFGVPIA--AHQGM  186 (312)
Q Consensus       168 ~ya~~R~~fg~~l~--~~q~v  186 (312)
                      +|+.+|+|||.|++  ++|.+
T Consensus       305 rYa~~R~QFg~~~~~~e~qii  325 (664)
T PLN02443        305 RYSAVRRQFGSQDGGPETQVI  325 (664)
T ss_pred             HHHHccEeCCCCCCccchhhh
Confidence            99999999999987  66666

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=98.96  E-value=1.9e-09  Score=98.31  Aligned_cols=58  Identities=41%  Similarity=0.722  Sum_probs=53.4

Q ss_pred             hhcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        247 EASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       247 ~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .+..+.++++|||++|||...+.+++++++|||+|||+|.|+|++.+|||++|+....
T Consensus        66 ~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~  123 (327)
T cd00567          66 SGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTD  123 (327)
T ss_pred             CCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeC
Confidence            4677889999999999999999999999999999999999999999999999986544

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=98.95  E-value=1.5e-09  Score=106.81  Aligned_cols=58  Identities=28%  Similarity=0.436  Sum_probs=52.2

Q ss_pred             hhhcccceeeecCCCCCCCcCCceeEEEEeC--CEEEEe-----eeeeeeeCCC-cccEEEEEecc
Q psy10338        246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKG--DEWILN-----GQKMWITNGG-VANWQNRTRDF  303 (312)
Q Consensus       246 ~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~--~g~~l~-----G~k~~vs~~~-~ad~~~v~~~~  303 (312)
                      ..++.++|+++|||++|||+.+++|+|++++  ++|+||     |+|+|++|+. .|++++|++.+
T Consensus       130 ~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl  195 (610)
T cd01150         130 NNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQL  195 (610)
T ss_pred             hccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEe
Confidence            3477789999999999999999999999998  899999     9999999985 49999999764

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=98.94  E-value=1.2e-09  Score=101.61  Aligned_cols=97  Identities=21%  Similarity=0.166  Sum_probs=80.2

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCccccCC------ccHH---HHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHh
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEG------AGFK---IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALE  172 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g------~G~~---~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~  172 (312)
                      ..+..+|+++..++++.|+||+||++++|+.++      .|+.   +.+......|+.+++.++|+++++++.+++|+++
T Consensus       167 ~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~  246 (370)
T cd01159         167 DTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGK  246 (370)
T ss_pred             cccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            357899999999999999999999999998653      2321   2233455678999999999999999999999999


Q ss_pred             hccC---CCCcccchhhHHHHHHhhhHHH
Q psy10338        173 RKAF---GVPIAAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       173 R~~f---g~~l~~~q~v~~~l~~~a~~~~  198 (312)
                      |.+|   ++++.++|.+|+++........
T Consensus       247 R~~~~~~g~~i~~~~~v~~~la~~~~~l~  275 (370)
T cd01159         247 RVRQYGAAVKMAEAPITQLRLAEAAAELD  275 (370)
T ss_pred             CcccCCCccccccCHHHHHHHHHHHHHHH
Confidence            9987   6789999999999766655443

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=98.94  E-value=1.8e-09  Score=106.52  Aligned_cols=60  Identities=28%  Similarity=0.451  Sum_probs=53.8

Q ss_pred             HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeC-CCcccEEEEEeccC
Q psy10338        245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITN-GGVANWQNRTRDFR  304 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~-~~~ad~~~v~~~~~  304 (312)
                      +..|+.++|+++|||++|||+.+++|+|+++  +|+|+||     |+|+||+| +..||+++|++.+.
T Consensus       122 ~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~  189 (646)
T PTZ00460        122 LLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLI  189 (646)
T ss_pred             HhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEEC
Confidence            4467889999999999999999999999985  6799998     99999998 68999999997654

>KOG1469|consensus

Probab=98.87  E-value=2.2e-09  Score=91.75  Aligned_cols=80  Identities=39%  Similarity=0.544  Sum_probs=75.4

Q ss_pred             cccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHh
Q psy10338        114 TRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYV  193 (312)
Q Consensus       114 ~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~  193 (312)
                      ..++.|++|+||..|++=.+|.||.+.+..|..+|+..|...+|.++++++...+.+.+|..||+++..+..+.+-++..
T Consensus       210 H~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~s  289 (392)
T KOG1469|consen  210 HFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAES  289 (392)
T ss_pred             cceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999988775543

>PLN02443 acyl-coenzyme A oxidase

Probab=98.81  E-value=9.8e-09  Score=101.59  Aligned_cols=60  Identities=28%  Similarity=0.415  Sum_probs=53.5

Q ss_pred             HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCC-CcccEEEEEeccC
Q psy10338        245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWQNRTRDFR  304 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~-~~ad~~~v~~~~~  304 (312)
                      +..++.++|+++|||++|||+.+++|+|+.+  +++|+||     |+|+|++|+ ..||+++|++.+.
T Consensus       126 ~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~  193 (664)
T PLN02443        126 AYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI  193 (664)
T ss_pred             HhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEEC
Confidence            4457889999999999999999999999998  6899998     999999997 7899999996643

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=98.76  E-value=2.2e-08  Score=93.52  Aligned_cols=86  Identities=19%  Similarity=0.224  Sum_probs=73.1

Q ss_pred             CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338        111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI  190 (312)
Q Consensus       111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l  190 (312)
                      +..++++.|+||+||.++++|.++.|+..+...++..|+.+++.    +..+++.+++|+++|.+||+|+.++|.+|+++
T Consensus       203 ~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~l  278 (380)
T cd01152         203 GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRL  278 (380)
T ss_pred             CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence            56789999999999999999999999999999999999887654    44555677889999999999999999999998


Q ss_pred             HHhhhHHHHH
Q psy10338        191 QYVSIFEREI  200 (312)
Q Consensus       191 ~~~a~~~~~~  200 (312)
                      +.........
T Consensus       279 a~~~~~l~~a  288 (380)
T cd01152         279 ARLEAEAEAL  288 (380)
T ss_pred             HHHHHHHHHH
Confidence            8776654443

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=98.50  E-value=2.1e-07  Score=89.39  Aligned_cols=72  Identities=24%  Similarity=0.265  Sum_probs=64.9

Q ss_pred             ccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhh
Q psy10338        115 RGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVS  194 (312)
Q Consensus       115 ~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a  194 (312)
                      ++|+||||  |.+++||.+|.||++++..++.+|+.+++.++|+++++++.+++|++           +|.||++++...
T Consensus       219 ~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaVq~~LAdma  285 (520)
T PTZ00457        219 DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGATDTVASFA  285 (520)
T ss_pred             CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHH
Confidence            79999997  99999999999999999999999999999999999999999999986           378999977766


Q ss_pred             hHHHH
Q psy10338        195 IFERE  199 (312)
Q Consensus       195 ~~~~~  199 (312)
                      .....
T Consensus       286 ~~ieA  290 (520)
T PTZ00457        286 CAMYA  290 (520)
T ss_pred             HHHHH
Confidence            65433

>KOG0135|consensus

Probab=98.47  E-value=1.8e-07  Score=87.43  Aligned_cols=88  Identities=27%  Similarity=0.493  Sum_probs=76.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCC----------------ccHHHHHhhhhccChhHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEG----------------AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA  166 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g----------------~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a  166 (312)
                      .-.|+|+.|.+++-+.|++||||.+|+|...+                +-|......|..+|++++..++|.+.-++.+|
T Consensus       250 ~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIA  329 (661)
T KOG0135|consen  250 CGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIA  329 (661)
T ss_pred             cccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHh
Confidence            45688999999999999999999999986532                34666778899999999999999999999999


Q ss_pred             HHHHHhhccCCC-------CcccchhhHHHH
Q psy10338        167 TKYALERKAFGV-------PIAAHQGMYLKI  190 (312)
Q Consensus       167 ~~ya~~R~~fg~-------~l~~~q~v~~~l  190 (312)
                      ++|...|+|||.       ++.++|.-|+||
T Consensus       330 IRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL  360 (661)
T KOG0135|consen  330 IRYSLSRRQFGPTKNGEEVPILEYPSQQYRL  360 (661)
T ss_pred             hhhHHhHhhhCCCCCCCcceeeechhHHHHH
Confidence            999999999995       667888888883

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=98.37  E-value=1.1e-06  Score=70.57  Aligned_cols=65  Identities=37%  Similarity=0.625  Sum_probs=60.1

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHH
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~  198 (312)
                      |+||.++.+.+..+|+.+++.++|.++.+++.+.+|+++|.+||+++.++|.++.++........
T Consensus         1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~   65 (150)
T PF00441_consen    1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLE   65 (150)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchh
Confidence            68999999999999999999999999999999999999999999999999999999776655443

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.19  E-value=4.3e-06  Score=80.00  Aligned_cols=85  Identities=19%  Similarity=0.155  Sum_probs=73.4

Q ss_pred             CcccEEEcceecCCCCc--cccC---CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhH
Q psy10338        113 DTRGITFEDVRVPKENV--LLGE---GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY  187 (312)
Q Consensus       113 ~~~~v~f~dv~Vp~~~l--lG~~---g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~  187 (312)
                      ..+.|+||||+||.|++  +|.+   +.||......     +..+...+|....++|.++.|++. .+|+.++.++|.||
T Consensus       251 ~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~~-----~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ  324 (477)
T TIGR02309       251 MDALVIFDDVLVPWERIFILGDVELCNNAYAATGAV-----NHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQ  324 (477)
T ss_pred             CeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHH
Confidence            56899999999999999  9998   8888665443     666899999999999999999999 99999999999999


Q ss_pred             HHHHHhhhHHHHHHHH
Q psy10338        188 LKIQYVSIFEREIQLM  203 (312)
Q Consensus       188 ~~l~~~a~~~~~~~~~  203 (312)
                      ++++.........+..
T Consensus       325 ~kLAEm~~~~Ea~ral  340 (477)
T TIGR02309       325 EKIAEIIVYLEAMKAF  340 (477)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998877776555443

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>KOG0135|consensus

Probab=97.05  E-value=0.00097  Score=63.07  Aligned_cols=76  Identities=25%  Similarity=0.359  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCCCCcCCceeEEEEe--CC
Q psy10338        227 DGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAGSDVNGVKTKAVKK--GD  277 (312)
Q Consensus       227 ~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~  277 (312)
                      -...+.|.++..+.|++.-+.                           .+..+|||+||-++||+..+++|+|+-+  .+
T Consensus       106 k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~  185 (661)
T KOG0135|consen  106 KKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHDYIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTE  185 (661)
T ss_pred             HHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHHHHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCC
Confidence            456778888888888763221                           2235699999999999999999999988  57


Q ss_pred             EEEEe-----eeeeeeeCC-CcccEEEEEec
Q psy10338        278 EWILN-----GQKMWITNG-GVANWQNRTRD  302 (312)
Q Consensus       278 g~~l~-----G~k~~vs~~-~~ad~~~v~~~  302 (312)
                      .|+||     -.|.||.|+ .+|.+.+|++.
T Consensus       186 EfVinTP~~~A~K~WiGn~a~~athavvfa~  216 (661)
T KOG0135|consen  186 EFVINTPDFSAIKCWIGNAAKHATHAVVFAQ  216 (661)
T ss_pred             eeEecCCcHHHHHHHhccccccceEEEEEEE
Confidence            89996     569999996 56888888854

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=96.07  E-value=0.0048  Score=59.25  Aligned_cols=32  Identities=16%  Similarity=-0.005  Sum_probs=27.7

Q ss_pred             EEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        272 AVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .++++|||+|||.|.|+|++ .||+++|...+.
T Consensus       171 ve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~  202 (477)
T TIGR02309       171 VEQTDKGVIVRGARMTATFP-IADEILIFPSTV  202 (477)
T ss_pred             EEEcCCCEEEeCHHHhhhhc-ccceEEEeccCC
Confidence            46678899999999999997 999999995543

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>KOG0136|consensus

Probab=95.48  E-value=0.024  Score=55.00  Aligned_cols=87  Identities=22%  Similarity=0.333  Sum_probs=66.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC----Ccc--H-----HHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE----GAG--F-----KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL  171 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~----g~G--~-----~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~  171 (312)
                      .-.++|..+.+++-+-|+|||||.+|+|-.-    ..|  .     ...-..+...|..++....-....+..+|++|+.
T Consensus       237 IG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSa  316 (670)
T KOG0136|consen  237 IGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSA  316 (670)
T ss_pred             CCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999998542    222  1     1222345556777777777777888899999999


Q ss_pred             hhccCCC-------CcccchhhHHH
Q psy10338        172 ERKAFGV-------PIAAHQGMYLK  189 (312)
Q Consensus       172 ~R~~fg~-------~l~~~q~v~~~  189 (312)
                      -|+|+..       .+.|+|.-|.|
T Consensus       317 VRRQ~~i~pg~~E~qIlDyqTQQ~r  341 (670)
T KOG0136|consen  317 VRRQSEIRPGQPEVQILDYQTQQYR  341 (670)
T ss_pred             HhhccCCCCCCCCceeeechhHHHH
Confidence            9999963       67888888887

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=94.63  E-value=0.009  Score=47.60  Aligned_cols=43  Identities=49%  Similarity=0.778  Sum_probs=39.2

Q ss_pred             CcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccc
Q psy10338          2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ   44 (312)
Q Consensus         2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~   44 (312)
                      +.|+.+|+.+++..+|..+.+++.+.+|++.|++||+|+..++
T Consensus         9 ~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~   51 (150)
T PF00441_consen    9 DTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHP   51 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchh
Confidence            4567789999999999999999999999999999999988754

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1

Probab=94.30  E-value=0.23  Score=38.93  Aligned_cols=49  Identities=24%  Similarity=0.242  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccchhhHHHHHHhhhHH
Q psy10338        149 PPVAAGAVGLAQRCLDEATKYALERKA--FGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       149 ~~~aa~~~G~~~~~l~~a~~ya~~R~~--fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                      +.+++..+|+++++++..++|++.|..  .+.+..+.+.+|.++.......
T Consensus         1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~   51 (134)
T PF08028_consen    1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARL   51 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHH
Confidence            467889999999999999999999987  7789999999999976655543

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.

>KOG0136|consensus

Probab=87.03  E-value=0.54  Score=45.96  Aligned_cols=54  Identities=26%  Similarity=0.413  Sum_probs=44.5

Q ss_pred             hcccceeeecCCCCCCCcCCceeEEEEeCC--EEEE-----eeeeeeeeCC-CcccEEEEEe
Q psy10338        248 ASGLGAYCVTEPGAGSDVNGVKTKAVKKGD--EWIL-----NGQKMWITNG-GVANWQNRTR  301 (312)
Q Consensus       248 g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~--g~~l-----~G~k~~vs~~-~~ad~~~v~~  301 (312)
                      .+.++|+|-||-++|+++..+.|+|+-+..  .|+|     +..|+|..+- ..|++.+|.+
T Consensus       141 ~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~A  202 (670)
T KOG0136|consen  141 MEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVA  202 (670)
T ss_pred             ceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeee
Confidence            567899999999999999999999998754  7877     6889998874 5577777664

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=82.55  E-value=3.5  Score=36.46  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             cceeeecCCCCC-C-Cc----CCceeE-EEEeCCEEEEeeeeeeeeCCCcccEEEEE
Q psy10338        251 LGAYCVTEPGAG-S-DV----NGVKTK-AVKKGDEWILNGQKMWITNGGVANWQNRT  300 (312)
Q Consensus       251 ~~~~a~tEp~~g-s-d~----~~~~t~-A~~~~~g~~l~G~k~~vs~~~~ad~~~v~  300 (312)
                      ..+.+++.|..- | .+    ..+-.+ .+++++|.+|+|.|...|++..+|.++|+
T Consensus       138 ~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~  194 (264)
T PF11794_consen  138 FLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVF  194 (264)
T ss_dssp             -EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE-
T ss_pred             EeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEe
Confidence            446778887521 1 11    112233 35568899999999999999999999998

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		4e-35
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		8e-29
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		5e-35
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		8e-29
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-31
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		8e-29
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		2e-31
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		1e-28
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		8e-31
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		9e-29
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		3e-23
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		1e-16
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		5e-17
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		3e-07
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		9e-15
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		5e-07
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		2e-14
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		9e-10
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		9e-14
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		4e-07
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		2e-13
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		8e-08
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		3e-12
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		1e-07
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		3e-12
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		7e-08
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		1e-10
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		2e-05
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		3e-10
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		9e-06
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		5e-10
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		6e-10
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		1e-07
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		3e-09
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		1e-06
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		9e-09
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		1e-08
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		2e-08
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		4e-04
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		2e-08
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		4e-04
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		2e-08
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		4e-04
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		2e-08
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		2e-07
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		2e-08
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		1e-07
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		2e-08
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		4e-08
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		7e-07
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		6e-08
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		9e-08
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		1e-06
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		1e-07
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		1e-07
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		1e-07
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		1e-07
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		2e-06
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		3e-06
3mkh_A	438	Podospora Anserina Nitroalkane Oxidase Length = 438		3e-05
3mkh_A	438	Podospora Anserina Nitroalkane Oxidase Length = 438		2e-04
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		2e-04
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		3e-04
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		6e-04
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		3e-04
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		6e-04

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 74/88 (84%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TFDKTRPPVAAGAVGL
Sbjct: 197 QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGL 256
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +A HQG+
Sbjct: 257 AQRALDEATKYALERKTFGKLLAEHQGI 284

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 78/131 (59%), Gaps = 32/131 (24%)
Query: 193 VSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG 252
           V + +R  +L L+  H    F     GGL L + D CL+ EELAYGCTG+ TA+EA+ LG
Sbjct: 40  VPLLKRAWELGLMNTHIPESF-----GGLGLGIIDSCLITEELAYGCTGVQTAIEANTLG 94
Query: 253 ---------------------------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 285
                                      AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQK
Sbjct: 95  QVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQK 154
Query: 286 MWITNGGVANW 296
           MWITNGG ANW
Sbjct: 155 MWITNGGKANW 165

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 74/88 (84%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TFDKTRPPVAAGAVGL
Sbjct: 207 QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +A HQG+
Sbjct: 267 AQRALDEATKYALERKTFGKLLAEHQGI 294

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 78/131 (59%), Gaps = 32/131 (24%)
Query: 193 VSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG 252
           V + +R  +L L+  H    F     GGL L + D CL+ EELAYGCTG+ TA+EA+ LG
Sbjct: 50  VPLLKRAWELGLMNTHIPESF-----GGLGLGIIDSCLITEELAYGCTGVQTAIEANTLG 104
Query: 253 ---------------------------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 285
                                      AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQK
Sbjct: 105 QVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQK 164
Query: 286 MWITNGGVANW 296
           MWITNGG ANW
Sbjct: 165 MWITNGGKANW 175

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 71/88 (80%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  FDKTRP VAAGAVGL
Sbjct: 207 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 267 AQRALDEATKYALERKTFGKLLVEHQAI 294

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
           +P+AA    Y K  +Y V +  R  +L L+  H   NC        GGL L  FD CL++
Sbjct: 36  IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 84
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
           EELAYGCTG+ TA+E + LG                           AYCVTEPGAGSDV
Sbjct: 85  EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 144
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 145 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 175

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 71/88 (80%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  FDKTRP VAAGAVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 291
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 292 AQRALDEATKYALERKTFGKLLVEHQAI 319

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
           +P+AA    Y K  +Y V +  R  +L L+  H   NC        GGL L  FD CL++
Sbjct: 61  IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 109
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
           EELAYGCTG+ TA+E + LG                           AYCVTEPGAGSDV
Sbjct: 110 EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 169
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 170 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 200

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 70/88 (79%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
            I   E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  FDK RP VAAGAVGL
Sbjct: 207 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
           AQR LDEATKYALERK FG  +  HQ +
Sbjct: 267 AQRALDEATKYALERKTFGKLLVEHQAI 294

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
           +P+AA    Y K  +Y V +  R  +L L+  H   NC        GGL L  FD CL++
Sbjct: 36  IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 84
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
           EELAYGCTG+ TA+E + LG                           AYCVTEPGAGSDV
Sbjct: 85  EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 144
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 145 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 175

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE 165
            MGQRAS T  + FEDV+VP EN L  EG GFKIAM T +KTR PVAAG+VG+A+R LDE
Sbjct: 200 KMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDE 259
Query: 166 ATKYALERKAFGVPIAAHQGMYLKI 190
           A KYA ER+AFG PIA  Q +  K+
Sbjct: 260 ARKYAKEREAFGEPIANFQAIQFKL 284

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 27/114 (23%)
Query: 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG----------------- 252
            N  +    GG+ L + D  +V EELAY C GI T   AS LG                 
Sbjct: 51  LNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFL 110
Query: 253 ----------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
                     A+ ++EPG GSD   +KT+A+++GD ++LNG KMWI+NGG A W
Sbjct: 111 RPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEW 164

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 60/100 (60%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  +G RAS T  + FED R+PKEN+L   G GFKIAM T D  R  +A+ A+G+AQ  L
Sbjct: 204 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 263
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM 203
           D A KYA  R AFG P+   Q +  K+  +++     +L+
Sbjct: 264 DCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLL 303

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 218 SGGLELSVFDGCLVAEELAYGCTG-----IMTALEASGLGAYCVTEPGAGSDVNGVKTKA 272
           S G+ +SV +   +   L +G +      I        +G + ++EPG GSD     T A
Sbjct: 87  STGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTA 146
Query: 273 VKKGDEWILNGQKMWITN 290
            ++GD W+LNG K WITN
Sbjct: 147 REEGDSWVLNGTKAWITN 164

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 58/100 (58%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  +G R S T  + FED R+PK+++L   G GFKIAM T D  R  +A+ A+G+AQ  L
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM 203
           D A  YA  R AFG P+   Q +  K+  +++     +L+
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLL 299

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITN 290
           +G + ++EPG GSD     T A  +GD W+LNG K WITN
Sbjct: 121 IGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITN 160

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ +G + S T  + FE+ R+P + ++   G GFK A+ T D TRP + A AVG+AQ  L
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
           D A  Y  ERK FG P++ +QG+   +  +++     +LM+
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMV 312

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           + +Y ++E  AGSD   ++T+AV  GD+WILNG K WITNGG + W
Sbjct: 133 MASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTW 178

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  MG   S T  + F+DV+VP EN+L  EG GFKIAM T D  R  VAA A+G+A+  L
Sbjct: 203 EDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAAL 262
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
            +A +Y+ +R  FG P+   Q +  K+
Sbjct: 263 ADAVEYSKQRVQFGKPLCKFQSISFKL 289

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVAN 295
           +E + LGA+ +TEP AG+D +G +T A K  D  + LNG K++ITNGG A+
Sbjct: 118 VEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD 168

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 48/80 (60%)
Query: 105 QNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLD 164
           + +G  AS T  +  ++V+VPKEN+L   G G +I   + + TR   AAG VGLAQ CLD
Sbjct: 203 EKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLD 262
Query: 165 EATKYALERKAFGVPIAAHQ 184
            A KY  ER+ FG PI   Q
Sbjct: 263 AAIKYCNERRQFGKPIGDFQ 282

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           LG + +TEP AGSDV  + + A  KGD W+LNG K WI+N   A+
Sbjct: 123 LGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQAD 167

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG +AS TR +  EDV+VP ENVL   G G KIA +  +  R  + AGAVG A+R L
Sbjct: 220 EKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRAL 279
Query: 164 DEATKYALERKAFGVPI 180
           + + +YA +R  FG PI
Sbjct: 280 ELSAQYATQRVQFGRPI 296

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 29/106 (27%)
Query: 219 GGLELSVFDGCLVAEELA--------YGCTGIMTALE-----------------ASG--L 251
           GGL+L      +VAEEL+        YG    +  L                  ASG  +
Sbjct: 84  GGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWI 143
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
            AYC+TEPG+GSD    KT+A   + G  +ILNG K WI+N G A+
Sbjct: 144 AAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAH 189

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
           HI   E  +G RAS T  +TFE+V+VP+ N+L   G G+K A+ + ++ R  +AA  +GL
Sbjct: 217 HIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGL 276
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVS 194
           AQ C D    Y  ER  FG  +   QG+  ++ +V+
Sbjct: 277 AQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVA 312

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITN 290
           L    +G++C++E GAGSD   +KT+A K+GD ++LNG KMWI++
Sbjct: 138 LTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISS 182

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 78  RTGEYPWGI---VKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
           RTGE   G+   +  A + GL  G     E+ MG  A  T    +++ R+  +  +  EG
Sbjct: 181 RTGEGSRGVSCFLVPADQPGLSFGK---PEEKMGLHAVPTTSAFYDNARIDADRRIGEEG 237
Query: 135 AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
            G +IA    D  R  +AA A GLAQ  LDEA  YA ER AFG  I  HQG+
Sbjct: 238 QGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGL 289

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           L    +GAY ++EP AGSD   ++  A      +++NG K WIT+GG A++
Sbjct: 125 LSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG  A+ T  +  E+V VP+EN+L  EG G   A+   D  R  VAA AVG+A+   
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           + A  YA ER+ FG  +  HQ +  KI
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIAFKI 278

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +GA+C+TEP AGSD   ++ +A +    ++LNG K WIT+ G A+
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH 162

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +G + +TEP  GSD  G++T+A + GD+WIL G KMWITNG VA+
Sbjct: 145 IGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVAD 189

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           MG R SDT  ++F DVRVP +N++  E +GF   M  F   R  +A  A   A R LD A
Sbjct: 226 MGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLA 285
Query: 167 TKYALERKAFGVPIAAHQGMYLKI 190
             +A ER+ FG P+   Q +  K+
Sbjct: 286 KSWARERETFGRPLTGRQIIRHKL 309

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
           +G+  VTEPGAGSDV  ++T+AV++GD +++NG K +IT+G  A++   T   R   PG+
Sbjct: 145 IGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFV--TTAVRTGGPGY 202

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE 165
            MG R+SDT  +++ DVRVP  N++  E  GF      F   R  +A  A   AQRCLD 
Sbjct: 222 KMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDL 281
Query: 166 ATKYALERKAFGVPIAAHQ-------GMYLKIQYVSIFEREI 200
             ++   R  FG P+ + Q       GM  +I    ++ R +
Sbjct: 282 TVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHV 323

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 219 GGLELSVFD-GCLVAEELAYGC-----TGIMTALEASGLGAYCVTEPGAGSDVNGVKTKA 272
           GG+  S+F  G  V   +A G      T +   L    +GA  +TEPG GSDV  ++T+A
Sbjct: 104 GGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRA 163
Query: 273 VKKGDEWILNGQKMWITNGGVANW 296
              GD +++NG K +IT+G  A++
Sbjct: 164 DLDGDHYVINGAKTYITSGVRADY 187

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +G + +TEP  GS+  G++T+A + G +WILNG KMWITNG +A+
Sbjct: 140 IGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLAD 184

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 251 LGAYCVTEPGAGSDVNG-VKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +G + +TEP  GSD  G +KT+A ++GD W+LNG KMWITNG +A+
Sbjct: 126 VGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAH 171

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           PA    +G RAS T  I  ++  VP+EN+L     G +      +  R  +A GA+G A+
Sbjct: 209 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 267
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
            C   A +Y L+RK FG P+AA+Q +  K+   +  + EI L L GV
Sbjct: 268 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 311

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
           +G + +TEP  GSD   + T+A K    + L+G KMWITN  +A+    W     D R E
Sbjct: 134 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 193
Query: 307 KPG 309
             G
Sbjct: 194 IRG 196

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           PA    +G RAS T  I  ++  VP+EN+L     G +      +  R  +A GA+G A+
Sbjct: 212 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 270
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
            C   A +Y L+RK FG P+AA+Q +  K+   +  + EI L L GV
Sbjct: 271 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 314

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
           +G + +TEP  GSD   + T+A K    + L+G KMWITN  +A+    W     D R E
Sbjct: 137 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 196
Query: 307 KPG 309
             G
Sbjct: 197 IRG 199

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           PA    +G RAS T  I  ++  VP+EN+L     G +      +  R  +A GA+G A+
Sbjct: 208 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 266
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
            C   A +Y L+RK FG P+AA+Q +  K+   +  + EI L L GV
Sbjct: 267 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 310

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
           +G + +TEP  GSD   + T+A K    + L+G KMWITN  +A+    W     D R E
Sbjct: 133 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 192
Query: 307 KPG 309
             G
Sbjct: 193 IRG 195

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG +AS+T  + F+ VRVP ENVL   G+GFK+AM   +  R  +AA   G  +  +
Sbjct: 249 EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGII 308
Query: 164 DEATKYALERKAFGVPI 180
            +A  +A  R  FG  I
Sbjct: 309 AKAVDHATNRTQFGEKI 325

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM--YLKIQYVSIFEREIQ 201
           F++   P    A+ + +    +  K   E  AFG+ + +  G       QY  + E    
Sbjct: 65  FEEVNDPAKNDALEMVEETTWQGLK---ELGAFGLQVPSELGGVGLCNTQYARLVE---- 117
Query: 202 LMLLGVHNCNVFLVSVSGGLELSV-FDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPG 260
             ++G+H+  V    ++ G   S+ F G L+    A     +        + A+C+TEP 
Sbjct: 118 --IVGMHDLGV---GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 172
Query: 261 AGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
           +GSD   ++T AV    G  + LNG K+WI+NGG+A+
Sbjct: 173 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 209

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG +AS+T  + F+ VRVP ENVL   G+GFK+AM   +  R  +AA   G  +  +
Sbjct: 229 EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGII 288
Query: 164 DEATKYALERKAFGVPI 180
            +A  +A  R  FG  I
Sbjct: 289 AKAVDHATNRTQFGEKI 305

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM--YLKIQYVSIFEREIQ 201
           F++   P    A+ + +    +  K   E  AFG+ + +  G       QY  + E    
Sbjct: 45  FEEVNDPAKNDALEMVEETTWQGLK---ELGAFGLQVPSELGGVGLCNTQYARLVE---- 97
Query: 202 LMLLGVHNCNVFLVSVSGGLELSV-FDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPG 260
             ++G+H+  V    ++ G   S+ F G L+    A     +        + A+C+TEP 
Sbjct: 98  --IVGMHDLGV---GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 152
Query: 261 AGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
           +GSD   ++T AV    G  + LNG K+WI+NGG+A+
Sbjct: 153 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 189

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
           +GA  ++EP AGSDV  +K KA KKG+ +ILNG K WITNG
Sbjct: 130 IGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
           E+  G + S TR +  ED  VPKEN LLGE G G  IA +  +  R  +  G VG A+R 
Sbjct: 225 EKKXGIKCSSTRTLILEDALVPKEN-LLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRA 283
Query: 163 LDEATKYALERKAFGVPIA 181
           ++ + +YA +R+ F  PIA
Sbjct: 284 VEISAQYANQRQQFKQPIA 302

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
           L AY +TEPG+GSD  G KT A    +G  ++LNG+K WITN   A+
Sbjct: 148 LAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFAD 194

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 27/108 (25%)
Query: 212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGA------------------ 253
           V++ +  GG  LS  D  ++ E LA GCT     +    + A                  
Sbjct: 67  VYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPP 126
Query: 254 ---------YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
                    YC+TEPG+GSD   + T A K+GD +ILNG K +I+  G
Sbjct: 127 LCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 49/86 (56%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ +G  ASDT  +  ED+ VP+E +L   G GF   +   D  R  +AA AVGL Q  L
Sbjct: 205 EEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAAL 264
Query: 164 DEATKYALERKAFGVPIAAHQGMYLK 189
           D A  YA  R+AFG PIA  +G+  K
Sbjct: 265 DYALAYAKGREAFGRPIAEFEGVSFK 290

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           ASG  LGA+ +TEPG+GSD   +KTKA K    W LNG K +IT G VA 
Sbjct: 117 ASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG 166

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           P  +     RAS T  I  + V VP+ENVL G  +         +  R  +A G +G ++
Sbjct: 204 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 262
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
            CL  A +YAL+R  FGVP+A +Q          + ++++  ML    LG+H C
Sbjct: 263 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 306

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           P  +     RAS T  I  + V VP+ENVL G  +         +  R  +A G +G ++
Sbjct: 202 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 260
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
            CL  A +YAL+R  FGVP+A +Q          + ++++  ML    LG+H C
Sbjct: 261 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 304

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
           P  +     RAS T  I  + V VP+ENVL G  +         +  R  +A G +G ++
Sbjct: 204 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 262
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
            CL  A +YAL+R  FGVP+A +Q          + ++++  ML    LG+H C
Sbjct: 263 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 306

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
           + A  +TEPGAGSD+  + T AVK GD +I+NGQK +ITNG
Sbjct: 124 ITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNG 164

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
           ++F++VR+P +  + G G GF+IA       R   A   +GLA+  L+ A +  L+R AF
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAF 300
Query: 177 GVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
           G P+    G   +I    I   + +L++L
Sbjct: 301 GKPLVNLGGNRERIADARIAINQTRLLVL 329

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
           I F  VRVP  N++LGEG GF+I+       R       VGLA+R L    + A +R AF
Sbjct: 249 IHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAF 308
Query: 177 GVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
              + AH+ +   I    I   +I+L+ L
Sbjct: 309 KKKLYAHEVVAHWIAESRIAIEKIRLLTL 337

>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 19/193 (9%)
Query: 69  IIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKEN 128
           I+   A+ DR GE  + +++         GH   S  +          + + +VRVP +N
Sbjct: 209 ILVTRADLDRNGEGSFEVLRHVA----TPGHTSVSGPH----------VRYTNVRVPTKN 254
Query: 129 VLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQGMY 187
           VL   G G K+A   FD +   V A  VGL +   D A K+A E    G VP+   Q   
Sbjct: 255 VLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFA 314
Query: 188 LKIQYVSI-FEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL 246
             +  V I  E    L     H             EL++      +E     CT ++ A+
Sbjct: 315 DLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAV 374
Query: 247 EASGLGAYCVTEP 259
              G+ AY +  P
Sbjct: 375 ---GISAYDLQRP 384

>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 247 EASGLGAYCVTEPGAGSDV-----NGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTR 301
           E S L +   +EPG  ++       G +T A  +GDEW++NG+KMW TN   A W  +  
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATN--CAGWDFKGC 182
Query: 302 DF 303
           D 
Sbjct: 183 DL 184

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMD-TFDKTRPPVAAGAVGLAQRCLDEA 166
           G RA+    +  + VRVP   VL G GA   + +  +    R  VA G VG+ + C   A
Sbjct: 185 GCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAA 244
Query: 167 TKYALERKAFGVPIAAHQ 184
             +A  R+ FG P+  HQ
Sbjct: 245 VAHARTREQFGRPLGDHQ 262

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + K    GL    IP     +G R      I  ++V VP E+ L G  + F+      
Sbjct: 229 GFIVKKDAPGLKATKIP---NKIGLRMVQNGDILLQNVFVPDEDRLPGVNS-FQDTSKVL 284
Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
             +R  VA   +G++    D   +Y  ERK FG P+AA Q    K+  V +      + L
Sbjct: 285 AVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKL--VQMLGNVQAMFL 342
Query: 205 LGVHNCNVF 213
           +G   C ++
Sbjct: 343 MGWRLCKLY 351

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +  + +TEP  GSD +G+ T A K    W +NGQK WI N   A+
Sbjct: 169 VACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFAD 213

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 85  GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
           G + K    GL    IP     +G R      I  ++V VP E+ L G  + F+      
Sbjct: 229 GFIVKKDAPGLKATKIP---NKIGLRMVQNGDILLQNVFVPDEDRLPGVNS-FQDTSKVL 284
Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
             +R  VA   +G++    D   +Y  ERK FG P+AA Q    K+  V +      + L
Sbjct: 285 AVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKL--VQMLGNVQAMFL 342
Query: 205 LGVHNCNVF 213
           +G   C ++
Sbjct: 343 MGWRLCKLY 351

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +  + +TEP  GSD +G+ T A K    W +NGQK WI N   A+
Sbjct: 169 VACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFAD 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	4e-44
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-32
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-18
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	6e-18
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	1e-43
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	4e-31
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	2e-18
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	7e-18
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	4e-41
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	1e-28
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	2e-16
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	1e-15
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	2e-40
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	9e-29
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	2e-16
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	4e-16
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	1e-38
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	3e-27
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	5e-16
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	2e-14
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	2e-37
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	1e-27
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	5e-15
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	4e-09
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	3e-36
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	2e-21
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	2e-14
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	2e-14
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	5e-36
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	9e-24
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	3e-14
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	5e-14
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-35
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	6e-24
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	6e-14
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	7e-14
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	2e-35
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	5e-24
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	7e-14
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	8e-14
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	3e-35
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	8e-24
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	4e-14
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-13
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	4e-35
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	5e-23
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	7e-13
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	9e-13
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	1e-34
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	5e-22
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	3e-13
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	3e-10
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	5e-34
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	2e-24
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	7e-13
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	2e-12
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	2e-33
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	5e-22
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	5e-12
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	1e-11
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	7e-33
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	5e-22
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	5e-12
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	9e-10
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	9e-33
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	3e-22
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-11
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	2e-10
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	4e-32
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	1e-21
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	6e-11
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-07
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	6e-31
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	5e-22
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	2e-11
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	4e-09
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	8e-31
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-22
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-11
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	1e-08
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	5e-30
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	8e-19
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	2e-11
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	9e-09
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	1e-29
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	2e-13
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	6e-11
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	9e-10
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	4e-29
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	3e-20
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	3e-11
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	3e-10
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	4e-29
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	4e-21
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	7e-10
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	3e-08
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	2e-28
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	7e-20
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	5e-11
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	7e-10
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	5e-28
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	1e-18
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	4e-11
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	6e-10
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	9e-28
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	3e-19
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	7e-11
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	1e-08
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	2e-27
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	1e-19
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	5e-11
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	6e-10
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	3e-26
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	4e-17
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-10
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	5e-09
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	5e-17
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	8e-10
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	9e-06
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	4e-15
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	3e-10
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-04
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	3e-13
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	1e-09
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	8e-05
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	2e-09
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	2e-08
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	2e-08
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	3e-06
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	9e-05
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	5e-08
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	5e-07
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	6e-08
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	2e-04
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	3e-06
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	6e-04
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	3e-05
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	1e-04
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	4e-05
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	8e-05

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  154 bits (391), Expect = 4e-44
 Identities = 63/82 (76%), Positives = 68/82 (82%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM  FDK RP VAAGAVGLAQR L
Sbjct: 212 ELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRAL 271

Query: 164 DEATKYALERKAFGVPIAAHQG 185
           DEATKYALERK FG  +  HQ 
Sbjct: 272 DEATKYALERKTFGKLLVEHQA 293

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  122 bits (309), Expect = 2e-32
 Identities = 59/105 (56%), Positives = 67/105 (63%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
           GGL L  FD CL++EELAYGCTG+ TA+E + L                           
Sbjct: 71  GGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 175

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           E  E Q+EFQA ARKF REEIIPVAAE+D+TGEYP  ++++A ELGL+N HIP
Sbjct: 15  EFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP 67

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 82.6 bits (205), Expect = 6e-18
 Identities = 33/44 (75%), Positives = 34/44 (77%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M  FDK RP VAAGAVGLAQR LDEATKYALERK FG  +  HQ
Sbjct: 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQ 292

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  152 bits (386), Expect = 1e-43
 Identities = 54/87 (62%), Positives = 63/87 (72%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
              MGQRAS T  + FEDV+VP EN L  EG GFKIAM T +KTR PVAAG+VG+A+R L
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRAL 257

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           DEA KYA ER+AFG PIA  Q +  K+
Sbjct: 258 DEARKYAKEREAFGEPIANFQAIQFKL 284

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  119 bits (300), Expect = 4e-31
 Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
           GG+ L + D  +V EELAY C GI T   AS L                           
Sbjct: 60  GGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            A+ ++EPG GSD   +KT+A+++GD ++LNG KMWI+NGG A W
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEW 164

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            L E Q++ QALAR+F +E I+PVA E+D   E PW +++K HE+GL+N  IP
Sbjct: 4   SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIP 56

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 82.2 bits (204), Expect = 7e-18
 Identities = 30/44 (68%), Positives = 35/44 (79%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA  Q
Sbjct: 235 MQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQ 278

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  147 bits (372), Expect = 4e-41
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
               G  +     + + +VRVP +NVL   G G K+A   FD +   V A  VGL +   
Sbjct: 230 VATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAF 289

Query: 164 DEATKYALERKAFG-VPIAAHQG 185
           D A K+A E    G VP+   Q 
Sbjct: 290 DAALKFAKEDNRGGAVPLLERQA 312

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  113 bits (285), Expect = 1e-28
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 33/120 (27%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
           GG   ++ +  ++ EE           + A+GL                           
Sbjct: 69  GGTGGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSP 128

Query: 252 -GAYCVTEPGAGSDVN-----GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305
             +   +EPG  ++       G +T A  +GDEW++NG+KMW TN    +++        
Sbjct: 129 LASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVV 188

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQ 44
              FD +   V A  VGL +   D A K+A E    G VP+   Q
Sbjct: 267 FGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQ 311

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTG-------EYPWGIVKKAHELGLINGHIP 101
            L+ +Q+     AR   R  ++P    + +         +        A   G++ G I 
Sbjct: 6   HLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQIS 65

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  144 bits (365), Expect = 2e-40
 Identities = 36/82 (43%), Positives = 51/82 (62%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ +G + S T  + FE+ R+P + ++   G GFK A+ T D TRP + A AVG+AQ  L
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271

Query: 164 DEATKYALERKAFGVPIAAHQG 185
           D A  Y  ERK FG P++ +QG
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQG 293

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  112 bits (284), Expect = 9e-29
 Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
           GG        C+V EE+A            + L                           
Sbjct: 74  GGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAM 133

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            +Y ++E  AGSD   ++T+AV  GD+WILNG K WITNGG + W
Sbjct: 134 ASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTW 178

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 77.9 bits (193), Expect = 2e-16
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           +L E     +   R    +EI P AAE D    +P   +   +  G    H+P
Sbjct: 18  QLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVP 70

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           + T D TRP + A AVG+AQ  LD A  Y  ERK FG P++ +Q
Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQ 292

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  140 bits (355), Expect = 1e-38
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK-IAMDTFDKTRPPVAAGAVGLAQRC 162
            +  G   +      F +  VP EN+L   G   + +    F  +   V A A+G A+  
Sbjct: 232 PELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAA 291

Query: 163 LDEATKYALERKAFGV-PIAAHQG 185
            +EA  +A      G   I  HQ 
Sbjct: 292 FEEALVFAKSDTRGGSKHIIEHQS 315

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  109 bits (274), Expect = 3e-27
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
           GG   S+    ++ EEL          + A+ L                           
Sbjct: 67  GGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGE 126

Query: 252 --GAYCVTEPGAGSDVN-----GVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
              +   +EP   ++       G++T A K G+EW+++G+K+W +N G  +++ 
Sbjct: 127 PLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKG 180

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-PIAAHQ 44
              F  +   V A A+G A+   +EA  +A      G   I  HQ
Sbjct: 270 ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ 314

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTG------EYPWGIVKKAHELGLINGHIP 101
           +L+ +Q E +  A+ F    +   +AE+          +      ++A   GLI   +P
Sbjct: 5   KLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  136 bits (344), Expect = 2e-37
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMD-TFDKTRPPVAAGAVGLAQRC 162
            +  G RA+    +  + VRVP   VL G GA   + +  +    R  VA G VG+ + C
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240

Query: 163 LDEATKYALERKAFGVPIAAHQGMYLKI 190
              A  +A  R+ FG P+  HQ +   I
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLVAGHI 268

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  109 bits (274), Expect = 1e-27
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------G 252
           GGL L   +       +   C+ + + + + G+                           
Sbjct: 48  GGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLA 107

Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           A   +E  AGSD++ ++T+    GD  +++G K+W T    A+ 
Sbjct: 108 AVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADH 151

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 73.7 bits (182), Expect = 5e-15
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
             +    R  VA G VG+ + C   A  +A  R+ FG P+  HQ
Sbjct: 219 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQ 262

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 62  RKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
                + +   AAE D +GE P  ++ +    GL+   + 
Sbjct: 5   DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVA 44

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  133 bits (336), Expect = 3e-36
 Identities = 39/87 (44%), Positives = 53/87 (60%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  MG   S T  + F+DV+VP EN+L  EG GFKIAM T D  R  VAA A+G+A+  L
Sbjct: 203 EDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAAL 262

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
            +A +Y+ +R  FG P+   Q +  K+
Sbjct: 263 ADAVEYSKQRVQFGKPLCKFQSISFKL 289

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 32/110 (29%)

Query: 219 GGLELSVFDG---CLVAEELAYGCTGIMTALE--------------------------AS 249
           GG      D     L  EELA    G+   L                             
Sbjct: 60  GGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVE 119

Query: 250 G--LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVANW 296
           G  LGA+ +TEP AG+D +G +T A K  D  + LNG K++ITNGG A+ 
Sbjct: 120 GTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADI 169

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            L + QQ+F  LA  F  +++ P   E D  G Y   ++ +   LG+   +  
Sbjct: 4   NLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFE 56

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M T D  R  VAA A+G+A+  L +A +Y+ +R  FG P+   Q
Sbjct: 240 MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQ 283

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  132 bits (335), Expect = 5e-36
 Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  +G R S T  + FED R+PK+++L   G GFKIAM T D  R  +A+ A+G+AQ  L
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259

Query: 164 DEATKYALERKAFGVPIAAHQG-------MYLKIQ 191
           D A  YA  R AFG P+   Q        M L ++
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQFKLADMALALE 294

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 99.1 bits (248), Expect = 9e-24
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 28/106 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           GG  L      +  EE++ GC      +                            SG  
Sbjct: 61  GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           +G + ++EPG GSD     T A  +GD W+LNG K WITN   A+ 
Sbjct: 121 IGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASA 166

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M T D  R  +A+ A+G+AQ  LD A  YA  R AFG P+   Q
Sbjct: 237 MQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQ 280

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           EL ET Q      R F  +E+ P+AA+ D+   +P   VKK   LGL+   +P
Sbjct: 5   ELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVP 57

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  131 bits (331), Expect = 2e-35
 Identities = 38/87 (43%), Positives = 50/87 (57%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ +G  ASDT  +  ED+ VP+E +L   G GF   +   D  R  +AA AVGL Q  L
Sbjct: 205 EEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAAL 264

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           D A  YA  R+AFG PIA  +G+  K+
Sbjct: 265 DYALAYAKGREAFGRPIAEFEGVSFKL 291

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 99.5 bits (249), Expect = 6e-24
 Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 28/106 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           GG  LS      + E +AY    +   +                           ASG  
Sbjct: 62  GGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEA 121

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           LGA+ +TEPG+GSD   +KTKA K    W LNG K +IT G VA  
Sbjct: 122 LGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGV 167

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 70.6 bits (174), Expect = 6e-14
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +   D  R  +AA AVGL Q  LD A  YA  R+AFG PIA  +
Sbjct: 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFE 285

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           E    +++     R+F + E+ P AAE DRTG +PW +V+K  E G+    +P
Sbjct: 6   EEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVP 58

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  130 bits (330), Expect = 2e-35
 Identities = 35/87 (40%), Positives = 46/87 (52%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG  A  T    +++ R+  +  +  EG G +IA    D  R  +AA A GLAQ  L
Sbjct: 207 EEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAAL 266

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           DEA  YA ER AFG  I  HQG+   +
Sbjct: 267 DEAVAYANERTAFGRKIIDHQGLGFLL 293

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 99.5 bits (249), Expect = 5e-24
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE-------------------------ASG--L 251
           GG          V EE+A     +  A+                           SG  +
Sbjct: 71  GGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQI 130

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           GAY ++EP AGSD   ++  A      +++NG K WIT+GG A++
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 23/44 (52%), Positives = 24/44 (54%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
               D  R  +AA A GLAQ  LDEA  YA ER AFG  I  HQ
Sbjct: 244 FSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQ 287

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 70.2 bits (173), Expect = 8e-14
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
             ++   E   L R+   + + P+   H++   YP G+ ++    GL++   P
Sbjct: 15  LPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQP 67

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  129 bits (328), Expect = 3e-35
 Identities = 36/87 (41%), Positives = 49/87 (56%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ MG  A+ T  +  E+V VP+EN+L  EG G   A+   D  R  VAA AVG+A+   
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           + A  YA ER+ FG  +  HQ +  KI
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIAFKI 278

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 98.7 bits (247), Expect = 8e-24
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 28/106 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           GG+ L      L  EELA     +   +                           A G  
Sbjct: 58  GGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEW 117

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           +GA+C+TEP AGSD   ++ +A +    ++LNG K WIT+ G A+ 
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHL 163

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 71.0 bits (175), Expect = 4e-14
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            L + Q+      R+  RE + P+A E+DR  EYPW  +K   ELGL+    P
Sbjct: 2   TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTP 54

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +   D  R  VAA AVG+A+   + A  YA ER+ FG  +  HQ
Sbjct: 229 LAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQ 272

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  130 bits (329), Expect = 4e-35
 Identities = 34/87 (39%), Positives = 51/87 (58%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E  +G RAS T  +TFE+V+VP+ N+L   G G+K A+ + ++ R  +AA  +GLAQ C 
Sbjct: 222 ENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCF 281

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
           D    Y  ER  FG  +   QG+  ++
Sbjct: 282 DYTIPYIKERIQFGKRLFDFQGLQHQV 308

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGC--TGIMTA-------------------------LEASGL 251
           GG   S     LV EELA       +                            L    +
Sbjct: 84  GGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKV 143

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           G++C++E GAGSD   +KT+A K+GD ++LNG KMWI++   A  
Sbjct: 144 GSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGL 188

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           + + ++ R  +AA  +GLAQ C D    Y  ER  FG  +   Q
Sbjct: 259 IGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQ 302

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 8/53 (15%), Positives = 24/53 (45%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
              + +   ++  +KF +E+I P+ +  D   +    +++   + GL+   + 
Sbjct: 28  TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVD 80

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  128 bits (325), Expect = 1e-34
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G  AS T  +  ++V+VPKEN+L   G G +I   + + TR   AAG VGLAQ CLD A
Sbjct: 205 LGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAA 264

Query: 167 TKYALERKAFGVPIAAHQG-------MYLKIQ 191
            KY  ER+ FG PI   Q        M ++++
Sbjct: 265 IKYCNERRQFGKPIGDFQMNQDMIAQMAVEVE 296

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 94.1 bits (235), Expect = 5e-22
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 28/105 (26%)

Query: 220 GLELSVFDGCLVAEELAYGCTGIMTALEA--------------------------SG--L 251
           G++       +V EE+A G + +   L                            S   L
Sbjct: 64  GMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFL 123

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
           G + +TEP AGSDV  + + A  KGD W+LNG K WI+N   A+ 
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADV 168

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
             + + TR   AAG VGLAQ CLD A KY  ER+ FG PI   Q
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQ 282

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPW-GIVKKAHELGLINGHIP 101
            L++  Q  Q   R F  ++I+P A + D    +P+   V+   ELG     IP
Sbjct: 4   NLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIP 57

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  127 bits (321), Expect = 5e-34
 Identities = 27/87 (31%), Positives = 45/87 (51%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
           E+ +G  +  TR + FED  VP  N +  EG GF IA+   +  R  +A+ ++G A   +
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270

Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
                +   RK FG P+A++Q +   +
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQFTL 297

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  101 bits (253), Expect = 2e-24
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 27/105 (25%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE-------------------------ASG--L 251
           GG  LS  D  ++ E LA GCT     +                           +    
Sbjct: 74  GGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKF 133

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            +YC+TEPG+GSD   + T A K+GD +ILNG K +I+  G ++ 
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDI 178

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            LNE Q+EFQ +A  F   E+ P  AE D+   +P  +++KA +LG    +I 
Sbjct: 18  GLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQ 70

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +   +  R  +A+ ++G A   +     +   RK FG P+A++Q
Sbjct: 248 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQ 291

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  128 bits (323), Expect = 2e-33
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 86  IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
           +V++    GL  G     E+ MG +AS TR +  EDV+VP ENVL   G G KIA +  +
Sbjct: 206 LVERDTP-GLSFG---PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLN 261

Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
             R  + AGAVG A+R L+ + +YA +R  FG PI     +  K+
Sbjct: 262 VGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKL 306

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 95.1 bits (237), Expect = 5e-22
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 31/107 (28%)

Query: 219 GGLELSVFDGCLVAEELAY--------------GCTGIM------------TALEASG-- 250
           GGL+L      +VAEEL+               G   ++              L ASG  
Sbjct: 84  GGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKL-ASGEW 142

Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
           + AYC+TEPG+GSD    KT+A   + G  +ILNG K WI+N G A+
Sbjct: 143 IAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAH 189

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
            +  +  R  + AGAVG A+R L+ + +YA +R  FG PI    
Sbjct: 257 FNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFG 300

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 42  AHQVFYSE-LNETQQEFQALARKFCREEIIPVAAEHDRTG-EYPWGIVKKAHELGLINGH 99
             +V+  E  +E+ +E     R F   E++P+    +    E    +++KA ELGL+   
Sbjct: 19  PERVYTPEDFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAID 78

Query: 100 IP 101
           +P
Sbjct: 79  VP 80

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  124 bits (313), Expect = 7e-33
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
              +G R S+T  + FED ++P  N+L  E  G  + M   D  R  +A G +GL Q  L
Sbjct: 211 LDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVL 270

Query: 164 DEATKYALERKAFGVPIAAHQG-------MYLKIQ 191
           D    Y   R+AFG  I   Q        MY ++ 
Sbjct: 271 DHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLM 305

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 94.1 bits (235), Expect = 5e-22
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 28/105 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEA--------------------------SG-- 250
           GG  L   +  LV EE++     +  +  A                          SG  
Sbjct: 70  GGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEY 129

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
           +GA  ++EP AGSDV  +K KA KKG+ +ILNG K WITNG  A+
Sbjct: 130 IGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 174

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 64.8 bits (159), Expect = 5e-12
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M   D  R  +A G +GL Q  LD    Y   R+AFG  I   Q
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQ 291

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 58.3 bits (142), Expect = 9e-10
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQ 105
            L+E Q++ +    KF +E + P A E DR+ E+       K+   LG++   I A  Q
Sbjct: 12  GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLG--ITAPVQ 68

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  126 bits (318), Expect = 9e-33
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 86  IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
           IV+K +  G+        E+ MG + S TR +  ED  VPKEN+L   G G  IA +  +
Sbjct: 211 IVEKDYA-GVSTSPE---EKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266

Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
             R  +  G VG A+R ++ + +YA +R+ F  PIA    +  K+
Sbjct: 267 IGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKL 311

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 95.9 bits (239), Expect = 3e-22
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 31/107 (28%)

Query: 219 GGLELSVFDGCLVAEELAYGC---------TGI-----------------MTALEASG-- 250
           GG+ L      L+AE+ +             GI                 +  L A+G  
Sbjct: 89  GGIGLDKVSSALIAEKFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLL-ATGEK 147

Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
           L AY +TEPG+GSD  G KT A    +G  ++LNG+K WITN   A+
Sbjct: 148 LAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFAD 194

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
            +  +  R  +  G VG A+R ++ + +YA +R+ F  PIA   
Sbjct: 262 FNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFP 305

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 40  IAAHQVFYSE-LNETQQEFQALARKFCREEIIPVAAEHDRT-GEYPWGIVKKAHELGLIN 97
           I   QVF  E  +   +        F   E++P     ++   +    ++K+A ELGL+ 
Sbjct: 22  ITIDQVFTPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLG 81

Query: 98  GHIP 101
             +P
Sbjct: 82  ADVP 85

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  124 bits (314), Expect = 4e-32
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 86  IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
           +V++    G+ +G     E+ MG +AS+T  + F+ VRVP ENVL   G+GFK+AM   +
Sbjct: 235 VVERGFG-GITHGPP---EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILN 290

Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
             R  +AA   G  +  + +A  +A  R  FG  I     +  K+
Sbjct: 291 NGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKL 335

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 30/107 (28%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           GG+ L       + E +     G+   L                           ASG  
Sbjct: 103 GGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGET 162

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
           + A+C+TEP +GSD   ++T AV    G  + LNG K+WI+NGG+A+
Sbjct: 163 VAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 209

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           M   +  R  +AA   G  +  + +A  +A  R  FG  I    
Sbjct: 286 MHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFG 329

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 44  QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            V   E  +  +E      +F  E   P  A++D          +   ELG     +P
Sbjct: 44  SVLNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVP 99

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  118 bits (299), Expect = 6e-31
 Identities = 30/79 (37%), Positives = 41/79 (51%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           MG R+SDT  +++ DVRVP  N++  E  GF      F   R  +A  A   AQRCLD  
Sbjct: 223 MGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLT 282

Query: 167 TKYALERKAFGVPIAAHQG 185
            ++   R  FG P+ + Q 
Sbjct: 283 VEWCRNRDTFGRPLISRQA 301

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 94.1 bits (235), Expect = 5e-22
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 29/106 (27%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASG- 250
           GG      D  ++ EE+ Y  +                                    G 
Sbjct: 81  GGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGE 140

Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
            +GA  +TEPG GSDV  ++T+A   GD +++NG K +IT+G  A+
Sbjct: 141 KIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD 186

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
              F   R  +A  A   AQRCLD   ++   R  FG P+ + Q   + L    +     
Sbjct: 257 AAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDV- 315

Query: 61  ARKFCREEIIPVAAEHDR 78
           AR + R     V      
Sbjct: 316 ARVYTRH----VVERQLA 329

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
                ++  +   R F   E++P A E +R GE P  + +KA ELGL+    P
Sbjct: 25  WTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFP 77

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  118 bits (299), Expect = 8e-31
 Identities = 33/79 (41%), Positives = 43/79 (54%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           MG R SDT  ++F DVRVP +N++  E +GF   M  F   R  +A  A   A R LD A
Sbjct: 226 MGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLA 285

Query: 167 TKYALERKAFGVPIAAHQG 185
             +A ER+ FG P+   Q 
Sbjct: 286 KSWARERETFGRPLTGRQI 304

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 29/106 (27%)

Query: 219 GGLELSVFDGCLVAEELAY--GCTGIMTALE-------------------------ASG- 250
           GG   +  D  LV E +    G TG+  AL                           +G 
Sbjct: 84  GGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGK 143

Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
            +G+  VTEPGAGSDV  ++T+AV++GD +++NG K +IT+G  A+
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRAD 189

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
           M  F   R  +A  A   A R LD A  +A ER+ FG P+   Q+   +L E  ++    
Sbjct: 260 MQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDV- 318

Query: 61  ARKFCREEIIPVAAEHDR 78
           A  + R     V      
Sbjct: 319 ACTYTRA----VMQRWLA 332

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 50  LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
               ++    +AR F   EI P  AE +  GE P  +   A E+GL+    P
Sbjct: 29  TTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFP 80

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  117 bits (294), Expect = 5e-30
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK--IAMDTFDKTRPPVAAGAVGLAQR 161
              +G RAS T  I F+D  +P ++VL+ +  G +    +     +   V    VG+AQ 
Sbjct: 214 WDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQA 273

Query: 162 CLDEATKYALERKAFGVPIAAHQ--GMYLKIQ 191
             D A      R       A      +  ++ 
Sbjct: 274 AYDTAVAALERRPEPPQAAALTLVAEIDSRLY 305

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 85.4 bits (212), Expect = 8e-19
 Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 29/107 (27%)

Query: 219 GGLEL-SVFDGCLVAEELAYGCTGIMTALEASG--------------------------- 250
           GGL +  ++D  +    +A        AL                               
Sbjct: 74  GGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRG 133

Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            +    V   G       V T        W+L+G+K  ++   V   
Sbjct: 134 MVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 3/83 (3%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV--FYSELNETQQEFQ 58
           +     +   V    VG+AQ   D A      R       A   V    S L   +    
Sbjct: 253 LAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAG 312

Query: 59  ALARKFCREEIIPVAAEHDRTGE 81
           +            ++ + D  G 
Sbjct: 313 SALTA-ADALSADLSGDMDERGR 334

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 46  FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            Y+ +    +             I   AAEHDR G +P        + GL+   +P
Sbjct: 16  LYAPVTPAGRVLLDRLAAHL-PRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVP 70

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  115 bits (290), Expect = 1e-29
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLG--EGAGFKIAMDTFDKTRPPVAAGAVGLAQR 161
              +G RAS T  + F+   V  + +L     GA     +     +   +     G+AQ 
Sbjct: 203 WDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQA 262

Query: 162 CLDEATKYALERKAFGVPIAAHQG----MYLKIQ 191
             D A  +   R     P A  +     +  ++ 
Sbjct: 263 ARDIAVGFCAGRGGE--PRAGARALVAGLDTRLY 294

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 29/107 (27%)

Query: 219 GGLEL-SVFDGCLVAEELAYGCTG---IMTALEASGLGAYCVTEPG-------------- 260
           GGL L  ++D       LA              + GL      + G              
Sbjct: 63  GGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRA 122

Query: 261 ----------AGSDVNGVKTKAVKKG-DEWILNGQKMWITNGGVANW 296
                     A  D  GV T+    G   W+L+G+K+ ++   +A  
Sbjct: 123 MAEGEAAVCGALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATH 169

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 46  FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
             + L    +    L        I   AA+ DRTG +P    ++  +LGL+   +P
Sbjct: 5   LRAPLTPAGRTVVDLLAGVI-PRISAEAADRDRTGTFPVEAFEQFAKLGLMGATVP 59

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +     +   +     G+AQ   D A  +   R     P A  +
Sbjct: 242 LAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGE--PRAGAR 283

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  114 bits (287), Expect = 4e-29
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
            PA    +G RAS T  I  ++  VP+EN +L    G +      +  R  +A GA+G A
Sbjct: 208 APAIHGKVGLRASITGEIVLDEAFVPEEN-ILPHVKGLRGPFTCLNSARYGIAWGALGAA 266

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
           + C   A +Y L+RK FG P+AA+Q +  K+   +  + EI L L GV 
Sbjct: 267 ESCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGVL 312

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 89.2 bits (222), Expect = 3e-20
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 38/132 (28%)

Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
            +  I     ++ LLG       +    GG  L      L+A E+    +G         
Sbjct: 51  TDAAIFREMGEIGLLGPT-----IPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQS 105

Query: 243 ---MTALE---------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
              M  +                A+G  +G + +TEP  GSD   + T+A K    + L+
Sbjct: 106 SLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLS 165

Query: 283 GQKMWITNGGVA 294
           G KMWITN  +A
Sbjct: 166 GSKMWITNSPIA 177

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
               +  R  +A GA+G A+ C   A +Y L+RK FG P+AA+Q
Sbjct: 248 FTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQ 291

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 48  SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            +L + ++  +  A  + + ++ P   E  R       I ++  E+GL+   IP
Sbjct: 17  QQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 70

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  113 bits (286), Expect = 4e-29
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
           +G  A DT  + F+D +VP  N+L  EG GF   M+   + R  VA  A   A+      
Sbjct: 208 VGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLT 267

Query: 167 TKYALERKAFGVPIAAHQG 185
            +Y  +R AFG  ++  Q 
Sbjct: 268 KQYVKQRTAFGKRVSEFQT 286

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 91.4 bits (228), Expect = 4e-21
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 27/104 (25%)

Query: 219 GGLELSVFDGCLVAEELAY-GCTGIMTALE------------------------ASG--L 251
           GGL        ++ EEL   G + +   L                          +G  +
Sbjct: 65  GGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELI 124

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
            A  +TEPGAGSD+  + T AVK GD +I+NGQK +ITNG  A+
Sbjct: 125 TAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHAD 168

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
           M+   + R  VA  A   A+       +Y  +R AFG  ++  Q 
Sbjct: 242 MEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQT 286

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 50  LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           L E    F+A  RKF  +E  P   + ++ G  P     K  E G +   + 
Sbjct: 10  LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVD 61

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  111 bits (281), Expect = 2e-28
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
                + +  RAS T  +  ++VR+P     L    G    +   ++ R  +  GA+G A
Sbjct: 210 ANEIHRKLSLRASVTSELVLDNVRLPASA-QLPLAEGLSAPLSCLNEARFGIVFGALGAA 268

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
           +  L+    Y   R+ F  P++ +Q    K+   +    E+   +L   
Sbjct: 269 RDSLETTIAYTQSREVFDKPLSNYQLTQEKL---ANMTVELGKGMLLAI 314

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 88.0 bits (219), Expect = 7e-20
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 39/132 (29%)

Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--- 247
              E+      L +LG+H      +   G    +     L   EL  G +G  + +    
Sbjct: 58  LPSELAKEFGNLGVLGMH------LQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQG 111

Query: 248 -----------------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
                                  A+G  +G + +TEP  GS+  G++T+A + G +WILN
Sbjct: 112 SLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILN 171

Query: 283 GQKMWITNGGVA 294
           G KMWITNG +A
Sbjct: 172 GTKMWITNGNLA 183

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +   ++ R  +  GA+G A+  L+    Y   R+ F  P++ +Q
Sbjct: 250 LSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQ 293

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 48  SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
             L++ +++  A  R+F    + P       +   P  + K+   LG++  H+ 
Sbjct: 24  RLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQ 77

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  110 bits (278), Expect = 5e-28
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
               ++ M  RAS T  +  E+VRVP+    L +  G K  +    + R  +A GA+G  
Sbjct: 198 AREVKRKMSLRASVTSELVLEEVRVPESL-RLPKALGLKAPLSCLTQARFGIAWGAMGAL 256

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
           +   +EA  +A  R  FG P+A  Q +  K+   +         LL   
Sbjct: 257 EAVYEEAVAFAKSRSTFGEPLAKKQLVQAKL---AEMLAWHTEGLLLAW 302

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 39/133 (29%)

Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
           F   +     +L  LG       L    GG  +S     L+  EL    +G+        
Sbjct: 43  FPTHLIPRFAELGFLGPT-----LPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQS 97

Query: 243 ---MTALEASG-----------------LGAYCVTEPGAGSDVNG-VKTKAVKKGDEWIL 281
              M  + A G                 +G + +TEP  GSD  G +KT+A ++GD W+L
Sbjct: 98  SLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVL 157

Query: 282 NGQKMWITNGGVA 294
           NG KMWITNG +A
Sbjct: 158 NGTKMWITNGNLA 170

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +    + R  +A GA+G  +   +EA  +A  R  FG P+A  Q
Sbjct: 238 LSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQ 281

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 58.7 bits (143), Expect = 6e-10
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 48  SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
             L   ++E Q  AR+F  +E +P   +    G +P  ++ +  ELG +   +P
Sbjct: 9   DLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  110 bits (277), Expect = 9e-28
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
               +  M  RAS T  +  + VR+P     L         +   ++ R  +  GA+G A
Sbjct: 215 ANTIKSKMSLRASVTSELVLDGVRLPDSA-RLPGATSLGAPLRCLNEARFGIVFGALGAA 273

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
           + CL+ A  YA  R+ F  PI   Q    K+   +    E     L   
Sbjct: 274 RDCLETALAYACSREQFDRPIGGFQLTQQKL---ADMTLEYGKGFLLAL 319

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 28/104 (26%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
           G   +S     L   EL  G +GI + +                           ASG  
Sbjct: 85  GCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHR 144

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVA 294
           +G + +TEP  GSD  G++T+A + GD+WIL G KMWITNG VA
Sbjct: 145 IGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVA 188

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
           +   ++ R  +  GA+G A+ CL+ A  YA  R+ F  PI   Q
Sbjct: 255 LRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQ 298

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 48  SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPW-GIVKKAHELGLINGHIP 101
           + L+  ++E +   R   +  I P  A     GE P   +  +  ELGL+  H+ 
Sbjct: 28  AVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLK 82

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  109 bits (275), Expect = 2e-27
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
                  +G R      I  ++V VP E+  L     F+        +R  VA   +G++
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDED-RLPGVNSFQDTSKVLAVSRVMVAWQPIGIS 299

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
               D   +Y  ERK FG P+AA Q    K+  +      +Q M L   
Sbjct: 300 MGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLG---NVQAMFLMGW 345

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 39/132 (29%)

Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--- 247
           F   I      + + G        +   G   LS+    +   E+A       T +    
Sbjct: 87  FPFHITPKLGAMGVAGGS------IKGYGCPGLSITANAIATAEIARVDASCSTFILVHS 140

Query: 248 -----------------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
                                  A    +  + +TEP  GSD +G+ T A K    W +N
Sbjct: 141 SLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKIN 200

Query: 283 GQKMWITNGGVA 294
           GQK WI N   A
Sbjct: 201 GQKRWIGNSTFA 212

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
                 +R  VA   +G++    D   +Y  ERK FG P+AA Q
Sbjct: 281 SKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQ 324

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 46  FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
           F   L   +Q  +   R+   +E+ P+  E+    E+P+ I  K   +G+  G I 
Sbjct: 51  FNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK 106

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  105 bits (265), Expect = 3e-26
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
            P  +     RAS T  I  + V VP+EN +L   +         +  R  +A G +G +
Sbjct: 201 APRIQGKFSLRASATGMIIMDGVEVPEEN-VLPGASSLGGPFGCLNNARYGIAWGVLGAS 259

Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
           + CL  A +YAL+R  FGVP+A +Q +  K+  +     EI L L    
Sbjct: 260 EFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLT---EITLGLHACL 305

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 41/134 (30%)

Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
           F REI     +L +LG        +   G   +S     L+A EL    +G         
Sbjct: 46  FHREIISEMGELGVLGPT------IKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQS 99

Query: 243 ---MTALEASG-----------------LGAYCVTEPGAGSDVNGVKTKAVKKGDE--WI 280
              M  + A G                 LG + +TEP +GSD + ++T+A        + 
Sbjct: 100 SLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYT 159

Query: 281 LNGQKMWITNGGVA 294
           LNG K WITN  +A
Sbjct: 160 LNGTKTWITNSPMA 173

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
               +  R  +A G +G ++ CL  A +YAL+R  FGVP+A +Q
Sbjct: 241 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 284

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 48  SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
            +L   +   +   R +C+E ++P     +R   +   I+ +  ELG++   I 
Sbjct: 12  EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK 65

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 24/86 (27%)

Query: 117 ITFEDVRVPKENVLLGEGAGFKIA------------MDTFDKTRPPVAAGAVGLAQRCLD 164
           I F  VRVP  N++LGEG GF+I+            M      R       VGLA+R L 
Sbjct: 249 IHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCM------R------TVGLAERALQ 296

Query: 165 EATKYALERKAFGVPIAAHQGMYLKI 190
              + A +R AF   + AH+ +   I
Sbjct: 297 IMCERATQRIAFKKKLYAHEVVAHWI 322

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 253 AYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
            +C+TEP  A SD   ++    +  D +++NG+K W +  G   
Sbjct: 151 CFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPK 194

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 15  AVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALAR 62
            VGLA+R L    + A +R AF   + AH+V    + E++   +   R
Sbjct: 287 TVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEK-IR 333

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEG-----------AGFKIAMDTFDKTRPPVAAGA 155
            G    D   +  ++ R+P+EN+L+                 K+   T    R  +   A
Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNA 289

Query: 156 VGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
                +    A +Y+  R+            I   Q    K+
Sbjct: 290 AQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 331

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNG-----QKMWITNGG 292
            G Y  TE G G+ + G++T A    K  E+ILN       K W    G
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLG 181

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 7/51 (13%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQ 44
             T    R  +   A     +    A +Y+  R+            I   Q
Sbjct: 275 YGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQ 325

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 19/102 (18%)

Query: 108 GQRASDTRGITFEDVRVPKENVLLGEG------------AGFKIAMDTFDKTRPPVAAGA 155
              + D   + F+ VR+P++ +L+                  ++   T    R  + A A
Sbjct: 233 AYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADA 292

Query: 156 VGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
                R +  AT+Y+  R+ FG         +  ++    ++
Sbjct: 293 SNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 334

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
           +G Y  TE G GS+V G++T A    K DE++++      +      
Sbjct: 132 IGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGG 178

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 1   MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQ 44
             T    R  + A A     R +  AT+Y+  R+ FG         +  ++
Sbjct: 278 YGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYK 328

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 107 MGQRASDTRGITFEDVRVPKENVL------LGEGAGFKIAMDTFDKTRPP-------VAA 153
              ++S ++ +   +V +P+  +        G+ AGF +  D+     P         +A
Sbjct: 213 QAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSA 272

Query: 154 GAVGLAQRCLDEATKYALERK--AFGVPIAAHQGMYLKI 190
            ++G+A+R ++   +    R     G  +       ++I
Sbjct: 273 VSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRI 311

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 14/92 (15%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCV--------------TEPGAGSD 264
           GGLE+S+ D       LA  C G   A       ++ +                    S 
Sbjct: 87  GGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSHQIAMFSKQLQDEIWLKDPDATASS 146

Query: 265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
                 K  +     ILNG   W +    A +
Sbjct: 147 SIAPFGKVEEVEGGIILNGDYGWSSGCDHAEY 178

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 86  IVKKAHELGLING-HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDT 143
            V +    G  N   +   +  +G R++ +  + F+D        LLG  G G ++ +  
Sbjct: 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA----IGWLLGLEGEGIRLILKM 294

Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 183
              TR   A G+  + +R    A  +A +R  FG P+   
Sbjct: 295 GGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ 334

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNG 291
           L    +TE   GSDV    T+A +  D  + L G K + +  
Sbjct: 179 LIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVP 220

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 7   TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 43
           TR   A G+  + +R    A  +A +R  FG P+   
Sbjct: 298 TRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ 334

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 53.0 bits (126), Expect = 5e-08
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 7/86 (8%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLD 164
             Q         F++V +P E V                FD     +    V  A+  + 
Sbjct: 246 ASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVG 305

Query: 165 EATKYALERKAFGVPIAAHQGMYLKI 190
            A           +  +    +  ++
Sbjct: 306 LAILI-----TEHIGTSKLPTVSARV 326

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 253 AYCVTEPGAG-----SDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFRYE 306
                +P        +       + V+K  D  I+NG K   T     ++ +    +R  
Sbjct: 150 PLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG 209

Query: 307 KPGHY 311
            PG  
Sbjct: 210 IPGEQ 214

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPP------------VAA 153
            +G R + +  +  EDV VP   VL  +      A      T P             ++A
Sbjct: 184 VVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISA 243

Query: 154 GAVGLAQRCLDEATKYALERK 174
             VG+A    D   ++  +R 
Sbjct: 244 PIVGMAYGAYDAHVEHQGKRV 264

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 14/92 (15%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGI-----MTALEASGLGA---------YCVTEPGAGSD 264
           GG +           ++A  C        +  +    L           +        S 
Sbjct: 59  GGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISS 118

Query: 265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
                         + +NG   W +    A+W
Sbjct: 119 SYAPMGAGQVVDGGYTVNGAWAWSSGCDHASW 150

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 12/89 (13%)

Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPP------------VAA 153
            +G R + ++ +  +   VP    L         A     +  P             + A
Sbjct: 201 VIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITA 260

Query: 154 GAVGLAQRCLDEATKYALERKAFGVPIAA 182
             +G+ +  L        +R A       
Sbjct: 261 AVIGITEGALACHIAVQKDRVAITGQKIK 289

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 14/92 (15%)

Query: 219 GGLELSVFDGCLVAEELAYGCTGI--------MTALEASGLGAYCVTEP-GAGSDVNGV- 268
           GG E+   +       +A              +   E +        E  G  +D     
Sbjct: 72  GGYEVHPREFAETVMGVAALDGASGWVTGIVGVHPWELAFADPQVQEEIWGEDNDTWMAS 131

Query: 269 ----KTKAVKKGDEWILNGQKMWITNGGVANW 296
                  A      ++L G+  + +      W
Sbjct: 132 PYAPMGVATPVDGGYVLKGRWSFSSGTDHCQW 163

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 8/52 (15%)

Query: 253 AYCVTEPGAGSDVN-------GVKTKAVKK-GDEWILNGQKMWITNGGVANW 296
              +T+P     +         +  + V+K  D  ++ G K   T    ++ 
Sbjct: 146 DGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE 197

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 114 TRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL 171
              + F++V +P + + L         +        R       VG+    +      A 
Sbjct: 257 EALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVI-----GAA 311

Query: 172 ERKAFGVPIAAHQGMYLKIQ 191
              A          +  K+ 
Sbjct: 312 ALAADYNGAQKASHVKDKLI 331

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 6/52 (11%), Positives = 12/52 (23%), Gaps = 8/52 (15%)

Query: 253 AYCVTEPGAG--------SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            + +T P            D         +     ++ G +M  T       
Sbjct: 141 THALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEV 192

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 9/88 (10%)

Query: 107 MGQRASDTRGITFEDVRVPKENVLL----GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
             +       + F+DV VP E V +            A    +     V A      +  
Sbjct: 240 SSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAF 299

Query: 163 LDEATKYALERKAFGVPIAAHQGMYLKI 190
           L  A        A G+    +  +  KI
Sbjct: 300 LGVAALM-----AEGIGADVYGHVQEKI 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	99.95
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	99.94
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	99.94
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	99.94
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.94
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	99.94
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	99.94
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	99.94
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	99.94
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	99.93
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	99.93
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	99.93
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	99.93
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	99.93
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	99.93
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	99.93
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	99.93
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	99.93
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	99.93
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	99.93
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.93
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	99.92
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	99.91
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	99.9
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	99.9
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	99.88
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	99.88
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	99.87
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	99.86
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	99.85
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	99.84
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	99.84
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	99.79
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	99.78
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.5
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.48
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	99.47
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	99.47
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.47
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	99.47
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	99.47
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	99.47
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	99.47
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	99.46
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	99.46
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	99.46
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	99.46
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	99.45
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	99.45
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	99.45
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	99.45
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	99.44
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	99.44
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	99.43
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	99.42
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	99.42
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	99.42
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	99.42
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	99.4
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	99.4
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	99.4
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.39
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	99.38
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	99.37
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	99.37
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	99.26
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	99.22
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	99.22
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.12
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.1
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.07
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	99.03
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.02
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.01
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	98.99
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	98.96
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	98.91
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	98.43
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	98.11
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	98.02
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	97.92
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	97.61

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=99.95  E-value=2e-27  Score=221.13  Aligned_cols=148  Identities=30%  Similarity=0.491  Sum_probs=128.7

Q ss_pred             cccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEccee
Q psy10338         44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVR  123 (312)
Q Consensus        44 ~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~  123 (312)
                      .+|+|.++++|++|++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                     
T Consensus        13 ~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~---------------------   71 (393)
T 3pfd_A           13 SFELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPE---------------------   71 (393)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCG---------------------
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCCh---------------------
Confidence            46899999999999999999999999999999999999999999999999999999998                     


Q ss_pred             cCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHH
Q psy10338        124 VPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM  203 (312)
Q Consensus       124 Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~  203 (312)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (393)
T 3pfd_A           72 --------------------------------------------------------------------------------   71 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeee
Q psy10338        204 LLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCV  256 (312)
Q Consensus       204 ~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~  256 (312)
                                   +|||.|++..+++.++|+++++|.+++++..                           |+.++++++
T Consensus        72 -------------~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~  138 (393)
T 3pfd_A           72 -------------EYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMASYAL  138 (393)
T ss_dssp             -------------GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred             -------------hHCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEE
Confidence                         7899999999999999999999998876432                           445679999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |||++|||+.+++|+|++++|||+|||+|.|+||+.+|||++|++.+++
T Consensus       139 tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~  187 (393)
T 3pfd_A          139 SEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDP  187 (393)
T ss_dssp             CBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCG
T ss_pred             cCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCCcccCEEEEEEEeCC
Confidence            9999999999999999999999999999999999999999999976654

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=99.94  E-value=6.8e-27  Score=217.75  Aligned_cols=151  Identities=25%  Similarity=0.355  Sum_probs=130.5

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEE
Q psy10338         40 IAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITF  119 (312)
Q Consensus        40 ~~~~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f  119 (312)
                      ...+..|+|.+++||++|++.+++|+++++.|...+.|+.+.+|+++|++|.+.||+++.+|+                 
T Consensus         9 ~~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~-----------------   71 (396)
T 3ii9_A            9 WDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPE-----------------   71 (396)
T ss_dssp             TTSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCG-----------------
T ss_pred             CCcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCh-----------------
Confidence            344567999999999999999999999999999999999999999999999999999999998                 


Q ss_pred             cceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHH
Q psy10338        120 EDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFERE  199 (312)
Q Consensus       120 ~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~  199 (312)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (396)
T 3ii9_A           72 --------------------------------------------------------------------------------   71 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hccc
Q psy10338        200 IQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGL  251 (312)
Q Consensus       200 ~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~  251 (312)
                                       +|||.|++..+...++|+++++|.++++.+.                            |+.+
T Consensus        72 -----------------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~  134 (396)
T 3ii9_A           72 -----------------QYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI  134 (396)
T ss_dssp             -----------------GGTSCCCCHHHHHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSC
T ss_pred             -----------------hhCCCCCCHHHHHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence                             7799999999999999999999988664332                            4445


Q ss_pred             ceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       252 ~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      +++++|||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       135 ~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a~~~  187 (396)
T 3ii9_A          135 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD  187 (396)
T ss_dssp             EEEECCCCC------CCCCEEEEETTEEEEEEEEEEEETGGGCSEEEEEEEEE
T ss_pred             eEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECCCccCCEEEEEEEec
Confidence            69999999999999999999999999999999999999999999999996553

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.94  E-value=1.7e-26  Score=214.92  Aligned_cols=153  Identities=34%  Similarity=0.503  Sum_probs=134.7

Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccE
Q psy10338         38 VPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGI  117 (312)
Q Consensus        38 ~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v  117 (312)
                      .++..+..|+|.+++||+++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+               
T Consensus         7 ~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~---------------   71 (393)
T 1rx0_A            7 RSLTSCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQT---------------   71 (393)
T ss_dssp             ---CCTTCTTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCG---------------
T ss_pred             CCcccCCcCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCCh---------------
Confidence            33444555788999999999999999999999999888999999999999999999999999998               


Q ss_pred             EEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHH
Q psy10338        118 TFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       118 ~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (393)
T 1rx0_A           72 --------------------------------------------------------------------------------   71 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcc
Q psy10338        198 REIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASG  250 (312)
Q Consensus       198 ~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~  250 (312)
                                         +|||.|++..+.+.++|+++++|.++++.+.                           |+.
T Consensus        72 -------------------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~  132 (393)
T 1rx0_A           72 -------------------DVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEK  132 (393)
T ss_dssp             -------------------GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTSS
T ss_pred             -------------------hhCCCCCCHHHHHHHHHHHHHhCcchhHHHHHhHHHHHHHHHHCCHHHHHHHHHHHhCCCc
Confidence                               7799999999999999999999987664322                           445


Q ss_pred             cceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       251 ~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ++++++|||++|||+.+++|+|++++|||+|||+|.||||+.+||+++|+++++
T Consensus       133 ~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~  186 (393)
T 1rx0_A          133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG  186 (393)
T ss_dssp             CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESS
T ss_pred             eEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCccCCEEEEEEEcC
Confidence            679999999999999999999999999999999999999999999999997654

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=99.94  E-value=1.7e-26  Score=215.56  Aligned_cols=149  Identities=30%  Similarity=0.463  Sum_probs=133.3

Q ss_pred             ccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         43 HQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        43 ~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      +..|++.++++|+++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                    
T Consensus        19 ~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~--------------------   78 (403)
T 3p4t_A           19 PGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPE--------------------   78 (403)
T ss_dssp             ----CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCG--------------------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCCh--------------------
Confidence            456999999999999999999999999999999999999999999999999999999998                    


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (403)
T 3p4t_A           79 --------------------------------------------------------------------------------   78 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcch-HHHhh----------------------------hcccce
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-MTALE----------------------------ASGLGA  253 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~-~~~~~----------------------------g~~~~~  253 (312)
                                    +|||.|++..+.+.++|+++++|.++ ++...                            |+.+++
T Consensus        79 --------------e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~  144 (403)
T 3p4t_A           79 --------------DAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGA  144 (403)
T ss_dssp             --------------GGTCCBCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEE
T ss_pred             --------------hhCCCCCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEE
Confidence                          77999999999999999999999887 43211                            445669


Q ss_pred             eeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        254 YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       254 ~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      +++|||++|||+.+++|+|++++|||+|||+|.||||+.+||+++|++.+++
T Consensus       145 ~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a~~~~  196 (403)
T 3p4t_A          145 LAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGG  196 (403)
T ss_dssp             EECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECSS
T ss_pred             EEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEecCCcccCEEEEEEEeCC
Confidence            9999999999999999999999999999999999999999999999976654

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=99.94  E-value=1.8e-26  Score=214.31  Aligned_cols=147  Identities=35%  Similarity=0.530  Sum_probs=133.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |+|.++++|+++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                       
T Consensus         3 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~-----------------------   59 (387)
T 2d29_A            3 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPE-----------------------   59 (387)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCG-----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCCh-----------------------
Confidence            899999999999999999999999998888999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        60 --------------------------------------------------------------------------------   59 (387)
T 2d29_A           60 --------------------------------------------------------------------------------   59 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeec
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVT  257 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~t  257 (312)
                                 +|||.|+++.+.+.++|++++.|+++++.+.                            |+.+.++++|
T Consensus        60 -----------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~t  128 (387)
T 2d29_A           60 -----------AYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT  128 (387)
T ss_dssp             -----------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECC
T ss_pred             -----------hhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeC
Confidence                       6799999999999999999999888775321                            3345699999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++++
T Consensus       129 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~  177 (387)
T 2d29_A          129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPP  177 (387)
T ss_dssp             BTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECSCC
T ss_pred             CCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCCCcCCEEEEEEEeCCc
Confidence            9999999999999999999999999999999999999999999766533

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=99.94  E-value=1.8e-26  Score=214.53  Aligned_cols=148  Identities=32%  Similarity=0.530  Sum_probs=129.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      +|+|.++++|+++++.+++|+++++.|.+.++|..+.+|+++|++|.+.||+++.+|+                      
T Consensus         1 m~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~----------------------   58 (391)
T 2vig_A            1 MQSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPE----------------------   58 (391)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCG----------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCH----------------------
Confidence            5889999999999999999999999999888999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (391)
T 2vig_A           59 --------------------------------------------------------------------------------   58 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.|++..+...++|+++++|.++++.+.                            |+.++++++
T Consensus        59 ------------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~  126 (391)
T 2vig_A           59 ------------ELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFAL  126 (391)
T ss_dssp             ------------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEe
Confidence                        7799999999999999999999887654322                            334569999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      |||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++++
T Consensus       127 tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~  176 (391)
T 2vig_A          127 SEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRA  176 (391)
T ss_dssp             CBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECCSS
T ss_pred             cCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCCcCCEEEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999766543

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=99.94  E-value=1.9e-26  Score=213.54  Aligned_cols=146  Identities=45%  Similarity=0.818  Sum_probs=132.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |+|.++++|+++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                       
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~-----------------------   57 (379)
T 1ukw_A            1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPE-----------------------   57 (379)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCG-----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCCh-----------------------
Confidence            789999999999999999999999998888999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        58 --------------------------------------------------------------------------------   57 (379)
T 1ukw_A           58 --------------------------------------------------------------------------------   57 (379)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecC
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTE  258 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tE  258 (312)
                                 +|||.|+++.+...++|++++.|.++++.+.                           |+.++++++||
T Consensus        58 -----------~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  126 (379)
T 1ukw_A           58 -----------EYGGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSE  126 (379)
T ss_dssp             -----------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCB
T ss_pred             -----------hhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecC
Confidence                       7799999999999999999999988775321                           34456899999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.+++
T Consensus       127 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~  173 (379)
T 1ukw_A          127 PGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNP  173 (379)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEESCG
T ss_pred             CCCCcChhhCeEEEEEeCCEEEEEEEEecccCCCcCCEEEEEEEcCC
Confidence            99999999999999999999999999999999999999999976653

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=99.94  E-value=2.2e-26  Score=213.66  Aligned_cols=146  Identities=26%  Similarity=0.400  Sum_probs=134.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .+++.++++|+++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                      
T Consensus        11 ~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~----------------------   68 (387)
T 3nf4_A           11 VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPE----------------------   68 (387)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCG----------------------
T ss_pred             cccccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCH----------------------
Confidence            4578899999999999999999999999999999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        69 --------------------------------------------------------------------------------   68 (387)
T 3nf4_A           69 --------------------------------------------------------------------------------   68 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeec
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVT  257 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~t  257 (312)
                                  +|||.|++..+++.++|+++++|.++++...                           |+.++++++|
T Consensus        69 ------------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~t  136 (387)
T 3nf4_A           69 ------------EWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLS  136 (387)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEc
Confidence                        7799999999999999999999998875432                           4456699999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+||+++|++.++
T Consensus       137 Ep~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  183 (387)
T 3nf4_A          137 EPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG  183 (387)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECC
T ss_pred             CCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCcccCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999997665

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=99.94  E-value=3.6e-26  Score=211.95  Aligned_cols=147  Identities=32%  Similarity=0.456  Sum_probs=132.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |+|.++++|+++++.+++|+++++.|.+.++|..+.+|+++|++|.+.||+++.+|+                       
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~-----------------------   57 (383)
T 1buc_A            1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEE-----------------------   57 (383)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCG-----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCCh-----------------------
Confidence            789999999999999999999999999888999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        58 --------------------------------------------------------------------------------   57 (383)
T 1buc_A           58 --------------------------------------------------------------------------------   57 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCC---hhHhHHHHHHHHHHccCcchHHHhh----------------------------hccccee
Q psy10338        206 GVHNCNVFLVSVSGGLE---LSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAY  254 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g---~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~  254 (312)
                                 +|||.|   ++..+...++|+++++|.++++.+.                            |+.++++
T Consensus        58 -----------~~GG~g~~~~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~  126 (383)
T 1buc_A           58 -----------KYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAF  126 (383)
T ss_dssp             -----------GGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEE
T ss_pred             -----------hhCCCCCCCCCHHHHHHHHHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEE
Confidence                       679999   9999999999999999888775322                            3445699


Q ss_pred             eecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        255 CVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       255 a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ++|||++|||+.+++|+|+++ +|||+|||+|.||||+.+||+++|++.++++
T Consensus       127 a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~  179 (383)
T 1buc_A          127 GLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKS  179 (383)
T ss_dssp             ECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCSEEEEEEESCSS
T ss_pred             EeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccCCCCcCCEEEEEEEeCCC
Confidence            999999999999999999999 9999999999999999999999999766543

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=99.93  E-value=5e-26  Score=211.91  Aligned_cols=148  Identities=64%  Similarity=1.028  Sum_probs=133.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|+|.++++|+++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                      
T Consensus        11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~----------------------   68 (396)
T 1egd_A           11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPE----------------------   68 (396)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCG----------------------
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCch----------------------
Confidence            4899999999999999999999999998888999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        69 --------------------------------------------------------------------------------   68 (396)
T 1egd_A           69 --------------------------------------------------------------------------------   68 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeec
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVT  257 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~t  257 (312)
                                  +|||.|+++.+.+.++|+++++|.++++.+.                           |+.++++++|
T Consensus        69 ------------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~t  136 (396)
T 1egd_A           69 ------------NCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVT  136 (396)
T ss_dssp             ------------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEec
Confidence                        6799999999999999999998888775421                           3345689999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++++
T Consensus       137 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~  185 (396)
T 1egd_A          137 EPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD  185 (396)
T ss_dssp             BTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEEEECCCC
T ss_pred             CCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCcccCEEEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999766543

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=99.93  E-value=8.7e-26  Score=210.78  Aligned_cols=146  Identities=27%  Similarity=0.443  Sum_probs=132.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|+|.+++||+++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                      
T Consensus        24 ~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~----------------------   81 (404)
T 2jif_A           24 APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDP----------------------   81 (404)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCG----------------------
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCch----------------------
Confidence            3678899999999999999999999998888999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (404)
T 2jif_A           82 --------------------------------------------------------------------------------   81 (404)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.|+++.+.+.++|++++.|.++++...                            + .++++++
T Consensus        82 ------------e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g-~~~~~a~  148 (404)
T 2jif_A           82 ------------EYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTE-KVGSFCL  148 (404)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHT-CCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC-CcceEEe
Confidence                        7799999999999999999999988765421                            2 2458999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |||++|||+.+++|+|++++|+|+|||+|.||||+.+||+++|++++++
T Consensus       149 tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar~~~  197 (404)
T 2jif_A          149 SEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDP  197 (404)
T ss_dssp             CBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCG
T ss_pred             cCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEEeCC
Confidence            9999999999999999999999999999999999999999999976553

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=99.93  E-value=1e-25  Score=209.09  Aligned_cols=147  Identities=31%  Similarity=0.394  Sum_probs=131.6

Q ss_pred             cC-CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         46 FY-SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        46 m~-~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      |+ |.++++|+++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                      
T Consensus         5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~----------------------   62 (385)
T 2pg0_A            5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDE----------------------   62 (385)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCG----------------------
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCCh----------------------
Confidence            66 8899999999999999999999998888999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (385)
T 2pg0_A           63 --------------------------------------------------------------------------------   62 (385)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccC-cchHHHhh--------------------------hcccceeeec
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGC-TGIMTALE--------------------------ASGLGAYCVT  257 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~-~~~~~~~~--------------------------g~~~~~~a~t  257 (312)
                                  +|||.|++..+.+.++|+++++| +++++.+.                          |+.++++++|
T Consensus        63 ------------~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~t  130 (385)
T 2pg0_A           63 ------------KYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMT  130 (385)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHHHCGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHhhCCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeC
Confidence                        77999999999999999999998 77665221                          3445699999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|.+.++++
T Consensus       131 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~  179 (385)
T 2pg0_A          131 EPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQ  179 (385)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEESCTT
T ss_pred             CCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCcccCEEEEEEEeCCc
Confidence            9999999999999999999999999999999999999999999766543

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=99.93  E-value=4.9e-26  Score=212.05  Aligned_cols=146  Identities=33%  Similarity=0.518  Sum_probs=132.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCC-HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYP-WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      |+|.++++|+++++.+++|+++++.|.+.++|..+.+| +++|++|.+.||+++.+|+                      
T Consensus         1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~----------------------   58 (397)
T 3mpi_A            1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPE----------------------   58 (397)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCG----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCCh----------------------
Confidence            89999999999999999999999999999999999999 9999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (397)
T 3mpi_A           59 --------------------------------------------------------------------------------   58 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCCh--hHhHHHHHHHHHHccCcchHHHhh----------------------------hccccee
Q psy10338        205 LGVHNCNVFLVSVSGGLEL--SVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAY  254 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~--~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~  254 (312)
                                  +|||.|+  +..+.+.+.|+++++|.++++...                            |+.++++
T Consensus        59 ------------~~GG~g~~~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~  126 (397)
T 3mpi_A           59 ------------EYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGF  126 (397)
T ss_dssp             ------------GGTSCCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHTTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCE
T ss_pred             ------------hhCCCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEE
Confidence                        6799998  888999999999998887664321                            3445689


Q ss_pred             eecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        255 CVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       255 a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      ++|||++|||+.+++|+|++++|||+|||+|.|+||+.+|||++|++.+++
T Consensus       127 a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~  177 (397)
T 3mpi_A          127 GITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDK  177 (397)
T ss_dssp             ECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSSEEEEEESCG
T ss_pred             EecCCCCCCCcccCeEEEEEeCCEEEEEEEEEeeCCCcccCEEEEEEEcCC
Confidence            999999999999999999999999999999999999999999999976543

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=99.93  E-value=8.3e-26  Score=210.87  Aligned_cols=146  Identities=32%  Similarity=0.496  Sum_probs=132.4

Q ss_pred             cccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCC-HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYP-WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        44 ~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      ..|+|.++++|+++++.+++|+.+++.|.+.++|+.+.+| +++|++|.+.||+++.+ +                    
T Consensus        24 ~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~--------------------   82 (403)
T 3sf6_A           24 IGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-K--------------------   82 (403)
T ss_dssp             HTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-C--------------------
T ss_pred             hccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-h--------------------
Confidence            3589999999999999999999999999999999999999 99999999999999998 7                    


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (403)
T 3sf6_A           83 --------------------------------------------------------------------------------   82 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hccccee
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAY  254 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~  254 (312)
                                    +|||.|++..++..++|+++++|.++++++.                            |+.++++
T Consensus        83 --------------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~  148 (403)
T 3sf6_A           83 --------------GYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCF  148 (403)
T ss_dssp             --------------STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEE
T ss_pred             --------------hhCCCCCCHHHHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEE
Confidence                          6799999999999999999999988654321                            4456699


Q ss_pred             eecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        255 CVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       255 a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ++|||++|||+.+++|+|++++|||+|||+|.||||+.+||+++|++.++
T Consensus       149 a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ar~~  198 (403)
T 3sf6_A          149 GLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTD  198 (403)
T ss_dssp             ECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETGGGCSEEEEEEEET
T ss_pred             EEccCCCCCCchhcEEEEEEECCEEEEEEEEEeecCCcccCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999986553

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=99.93  E-value=9.4e-26  Score=210.51  Aligned_cols=146  Identities=32%  Similarity=0.452  Sum_probs=132.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      +++.++++|+++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                       
T Consensus        25 ~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~-----------------------   81 (403)
T 3r7k_A           25 PEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPE-----------------------   81 (403)
T ss_dssp             CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCG-----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCCh-----------------------
Confidence            467899999999999999999999999989999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (403)
T 3r7k_A           82 --------------------------------------------------------------------------------   81 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHcc-CcchHHHhh----------------------------hcccceeee
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYG-CTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~-~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                 +|||.|+++.+.+.++|++++. |+++++.+.                            |+.++++++
T Consensus        82 -----------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~  150 (403)
T 3r7k_A           82 -----------EVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGV  150 (403)
T ss_dssp             -----------GGTCCBCCHHHHHHHHHHHHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred             -----------hhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEe
Confidence                       7899999999999999999997 777532211                            445679999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.+++
T Consensus       151 tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a~~~~  199 (403)
T 3r7k_A          151 TEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGG  199 (403)
T ss_dssp             CBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEEEECSS
T ss_pred             cCCCCCCChhhceEEEEEECCEEEEEEEEEcccCCccCCEEEEEEEcCC
Confidence            9999999999999999999999999999999999999999999976654

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=99.93  E-value=6.8e-26  Score=210.25  Aligned_cols=146  Identities=31%  Similarity=0.505  Sum_probs=129.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|+|.++++|+++++.+++|+++++.|...+.|+.+.+|+++|++|.+.||+++.+|+                      
T Consensus         6 ~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~----------------------   63 (385)
T 2eba_A            6 ALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPP----------------------   63 (385)
T ss_dssp             CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCG----------------------
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCch----------------------
Confidence            4788999999999999999999999999888898899999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (385)
T 2eba_A           64 --------------------------------------------------------------------------------   63 (385)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.|+++.+.+.++|+++++|.++++.+.                            |+.++++++
T Consensus        64 ------------~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~  131 (385)
T 2eba_A           64 ------------EYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGL  131 (385)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEe
Confidence                        7799999999999999999998888764321                            444569999


Q ss_pred             cCCCCCCCc-CCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        257 TEPGAGSDV-NGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       257 tEp~~gsd~-~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||++|||+ .+++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       132 tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  180 (385)
T 2eba_A          132 TEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE  180 (385)
T ss_dssp             CCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEETTTTCSEEEEEEECC
T ss_pred             CCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCCCcccCEEEEEEEeC
Confidence            999999999 999999999999999999999999999999999997654

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=99.93  E-value=1.1e-25  Score=210.81  Aligned_cols=149  Identities=26%  Similarity=0.257  Sum_probs=125.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcC------------------CCCHHHHHHHHHcCCccccCCCCCCc
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTG------------------EYPWGIVKKAHELGLINGHIPASEQN  106 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~------------------~~p~~~~~~l~~~G~~~~~~P~~~~~  106 (312)
                      .|+|.++++|+++++.+++|+++++.|...+++..+                  .+|+++|++|.+.||+++.+|+    
T Consensus         4 ~M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~----   79 (415)
T 4hr3_A            4 SMDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPD----   79 (415)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCC----
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCH----
Confidence            489999999999999999999999988877665443                  2678999999999999999998    


Q ss_pred             cCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhh
Q psy10338        107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM  186 (312)
Q Consensus       107 ~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v  186 (312)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (415)
T 4hr3_A           80 --------------------------------------------------------------------------------   79 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH---------------------
Q psy10338        187 YLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA---------------------  245 (312)
Q Consensus       187 ~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~---------------------  245 (312)
                                                    +|||.|++..+.+.++|++++.|.+..++                     
T Consensus        80 ------------------------------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q  129 (415)
T 4hr3_A           80 ------------------------------PELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQ  129 (415)
T ss_dssp             ------------------------------TTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHH
T ss_pred             ------------------------------HHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHH
Confidence                                          77999999999999999999887432211                     


Q ss_pred             --------hhhcccceeeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccCCCC
Q psy10338        246 --------LEASGLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFRYEK  307 (312)
Q Consensus       246 --------~~g~~~~~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~~~~  307 (312)
                              ..|+.++++++|||+ +|||+.+++|+|++++|||+|||+|.||||+.+  |||++|++.++++.
T Consensus       130 ~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~  202 (415)
T 4hr3_A          130 KEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNA  202 (415)
T ss_dssp             HHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTS
T ss_pred             HHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeEEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCC
Confidence                    114556799999999 999999999999999999999999999999977  99999997776544

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=99.93  E-value=1.4e-25  Score=209.14  Aligned_cols=145  Identities=27%  Similarity=0.450  Sum_probs=131.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|++.++++|+++++.+++|+.+++.|...++|+.+.+|+++|++|.+.||+++.+ +                      
T Consensus        21 ~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~----------------------   77 (399)
T 3swo_A           21 DTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-Q----------------------   77 (399)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-C----------------------
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-h----------------------
Confidence            37889999999999999999999999999999999999999999999999999998 8                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (399)
T 3swo_A           78 --------------------------------------------------------------------------------   77 (399)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.|+++.+.+.++|+++++|.++++++.                            |+.++++++
T Consensus        78 ------------e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~  145 (399)
T 3swo_A           78 ------------GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGL  145 (399)
T ss_dssp             ------------STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEe
Confidence                        6799999999999999999999988754321                            445569999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       146 tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a~~~  193 (399)
T 3swo_A          146 TEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD  193 (399)
T ss_dssp             CBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEBCT
T ss_pred             cCCCCCCCCccceEEEEEeCCEEEEEEEEEeECCCCccCEEEEEEEeC
Confidence            999999999999999999999999999999999999999999997654

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=99.93  E-value=1.6e-25  Score=210.77  Aligned_cols=144  Identities=27%  Similarity=0.413  Sum_probs=125.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |++.+++||+++++.+++|+++++.|...++++.+.+|+++|++|.+.||+++.+| +                      
T Consensus        51 ~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~p-e----------------------  107 (436)
T 2ix5_A           51 FNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK-G----------------------  107 (436)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCC-S----------------------
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCC-C----------------------
Confidence            56689999999999999999999999888888788999999999999999999988 3                      


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (436)
T 2ix5_A          108 --------------------------------------------------------------------------------  107 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceeeec
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYCVT  257 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a~t  257 (312)
                                  |||.|++..+...++|+++++|.++++++                            .|+.++++++|
T Consensus       108 ------------~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~t  175 (436)
T 2ix5_A          108 ------------YGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALT  175 (436)
T ss_dssp             ------------TTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECC
T ss_pred             ------------CCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEec
Confidence                        47777777788888888888777765322                            14456699999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|+++++
T Consensus       176 Ep~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~  222 (436)
T 2ix5_A          176 EPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT  222 (436)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEET
T ss_pred             CCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEEC
Confidence            99999999999999999999999999999999999999999996654

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.93  E-value=2.3e-25  Score=207.30  Aligned_cols=145  Identities=34%  Similarity=0.490  Sum_probs=130.8

Q ss_pred             CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCH--HHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPW--GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |.+++||+++++.+++|+++++.|...++|..+.+|+  ++|++|.+.||+++.+|+                       
T Consensus        11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~-----------------------   67 (394)
T 1ivh_A           11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPV-----------------------   67 (394)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCG-----------------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCc-----------------------
Confidence            6799999999999999999999998888999999998  999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (394)
T 1ivh_A           68 --------------------------------------------------------------------------------   67 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeec
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVT  257 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~t  257 (312)
                                 +|||.|+++.+.+.++|++++.|.++++...                            |+.++++++|
T Consensus        68 -----------e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t  136 (394)
T 1ivh_A           68 -----------QYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMS  136 (394)
T ss_dssp             -----------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECC
T ss_pred             -----------ccCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEec
Confidence                       7799999999999999999999888765332                            3445699999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ||++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++++
T Consensus       137 Ep~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~Ad~~~v~ar~~~~  185 (394)
T 1ivh_A          137 EPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLA  185 (394)
T ss_dssp             BTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCSEEEEEEESCTT
T ss_pred             CCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCcCCEEEEEEEeCCc
Confidence            9999999999999999999999999999999999999999999766543

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=2.7e-25  Score=205.26  Aligned_cols=143  Identities=34%  Similarity=0.535  Sum_probs=127.1

Q ss_pred             CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCC
Q psy10338         48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE  127 (312)
Q Consensus        48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~  127 (312)
                      |.+++||+++++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+                         
T Consensus         1 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~-------------------------   55 (372)
T 2dvl_A            1 MTLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPE-------------------------   55 (372)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCG-------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCh-------------------------
Confidence            4579999999999999999999998888899899999999999999999999998                         


Q ss_pred             CccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcc
Q psy10338        128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV  207 (312)
Q Consensus       128 ~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~  207 (312)
                                                                                                      
T Consensus        56 --------------------------------------------------------------------------------   55 (372)
T 2dvl_A           56 --------------------------------------------------------------------------------   55 (372)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeecCC
Q psy10338        208 HNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVTEP  259 (312)
Q Consensus       208 g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~tEp  259 (312)
                               +|||.|+++.+...+.|++++.|.++++.+.                            |+.++++++|||
T Consensus        56 ---------~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp  126 (372)
T 2dvl_A           56 ---------EWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP  126 (372)
T ss_dssp             ---------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCS
T ss_pred             ---------hhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCC
Confidence                     6799999999999999999998887664322                            334568999999


Q ss_pred             CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ++|||+.+++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       127 ~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  171 (372)
T 2dvl_A          127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE  171 (372)
T ss_dssp             SCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEET
T ss_pred             CCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCCEEEEEEEeC
Confidence            999999999999999999999999999999999999999986553

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=99.92  E-value=1.1e-24  Score=202.52  Aligned_cols=145  Identities=27%  Similarity=0.398  Sum_probs=128.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|+|.+++||+++++.+++|+++++.|...+.+..+.+|+++|++|.+.||+++.+ +                      
T Consensus         9 ~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~----------------------   65 (392)
T 1siq_A            9 VLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-K----------------------   65 (392)
T ss_dssp             CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-E----------------------
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-H----------------------
Confidence            48889999999999999999999999988888888899999999999999999988 7                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        66 --------------------------------------------------------------------------------   65 (392)
T 1siq_A           66 --------------------------------------------------------------------------------   65 (392)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a~  256 (312)
                                  +|||.|++..+...+.|++++.|.++++..                            .|+.++++++
T Consensus        66 ------------~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~  133 (392)
T 1siq_A           66 ------------GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGL  133 (392)
T ss_dssp             ------------ETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEE
Confidence                        668888888888888888888887654321                            1445679999


Q ss_pred             cCCCCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        257 TEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||++|||+.+++|+|+++  +|||+|||+|.||||+.+|||++|++.++
T Consensus       134 tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~a~~~  183 (392)
T 1siq_A          134 TEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE  183 (392)
T ss_dssp             CBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCSEEEEEEEET
T ss_pred             CCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeecCCcccCEEEEEEEEC
Confidence            9999999999999999999  99999999999999999999999996654

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=99.91  E-value=2e-24  Score=203.59  Aligned_cols=146  Identities=23%  Similarity=0.342  Sum_probs=125.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhh----cC-CCC--HHHHHHHHHcCCccccCCCCCCccCCcCCCcccE
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDR----TG-EYP--WGIVKKAHELGLINGHIPASEQNMGQRASDTRGI  117 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~----~~-~~p--~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v  117 (312)
                      +|+|.+++||++|++.+++|+++++.|...+++.    .+ .||  +++|++|.+.||+++.+|+               
T Consensus         2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---------------   66 (438)
T 3mkh_A            2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISP---------------   66 (438)
T ss_dssp             CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCG---------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCc---------------
Confidence            3899999999999999999999999998776643    22 465  8999999999999999998               


Q ss_pred             EEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHH
Q psy10338        118 TFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       118 ~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (438)
T 3mkh_A           67 --------------------------------------------------------------------------------   66 (438)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh--------------------------h--c
Q psy10338        198 REIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------A--S  249 (312)
Q Consensus       198 ~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~--------------------------g--~  249 (312)
                                         +|||.|++..+++.++|+|++.|+++++.+.                          |  +
T Consensus        67 -------------------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~l~~~~~G~g~  127 (438)
T 3mkh_A           67 -------------------AHGGTGGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGS  127 (438)
T ss_dssp             -------------------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCGGGHHHHGGGSSSCSC
T ss_pred             -------------------ccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHhhCCHHHHHHHHHHhcCCCC
Confidence                               7799999999999999999988887664211                          2  3


Q ss_pred             ccceeeecCCCCCC-----CcCCceeEEEEeCCEEEEeeeeeeeeCCC-----cccEEEEEeccC
Q psy10338        250 GLGAYCVTEPGAGS-----DVNGVKTKAVKKGDEWILNGQKMWITNGG-----VANWQNRTRDFR  304 (312)
Q Consensus       250 ~~~~~a~tEp~~gs-----d~~~~~t~A~~~~~g~~l~G~k~~vs~~~-----~ad~~~v~~~~~  304 (312)
                      .++++++|||++||     |+.+++|+|++++|||+|||+|.||||+.     +||+++|++.+.
T Consensus       128 ~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~  192 (438)
T 3mkh_A          128 PLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDA  192 (438)
T ss_dssp             CCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEEEEEEEECSCTTTTCTTSSCCSEEEEEEEEC
T ss_pred             ceEEEEEccCCCCCCccccccccceeEEEEeCCEEEEEeEEEEecCCCccccccCcEEEEEEEec
Confidence            56799999999998     68899999999999999999999999997     899999996553

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=99.90  E-value=9e-24  Score=205.57  Aligned_cols=144  Identities=28%  Similarity=0.460  Sum_probs=123.4

Q ss_pred             CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcC-CCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         48 SELNETQQEFQALARKFCREEIIPVAAEHDRTG-EYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~-~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      ..+++||++|++.+++|+++++.|...+++..+ .+|+++|++++++||+++.+|+                        
T Consensus        31 ~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPe------------------------   86 (597)
T 3owa_A           31 EDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPE------------------------   86 (597)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCG------------------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCCh------------------------
Confidence            458999999999999999999999888888765 6889999999999999999998                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (597)
T 3owa_A           87 --------------------------------------------------------------------------------   86 (597)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH---------------------------hhhcccceeeecCC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA---------------------------LEASGLGAYCVTEP  259 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~---------------------------~~g~~~~~~a~tEp  259 (312)
                                +|||.|+++.+...+.|++++++.+..++                           ..|+.++++++|||
T Consensus        87 ----------e~GG~G~~~~~~~~v~Eel~~~~~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp  156 (597)
T 3owa_A           87 ----------EYGGIGLDKVSSALIAEKFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEP  156 (597)
T ss_dssp             ----------GGTCCCCCHHHHHHHHHHHGGGTHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBT
T ss_pred             ----------hhCCCCCCHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCC
Confidence                      67888888888888888888876433221                           11556779999999


Q ss_pred             CCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        260 GAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      ++|||+.+++|+|+++  |++|+|||+|.||||+.+|||++|++.+++
T Consensus       157 ~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~~Ad~~lV~Art~~  204 (597)
T 3owa_A          157 GSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDG  204 (597)
T ss_dssp             TBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCccCCEEEEEEEeCC
Confidence            9999999999999985  457999999999999999999999976653

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=99.90  E-value=1.1e-23  Score=198.52  Aligned_cols=145  Identities=23%  Similarity=0.360  Sum_probs=125.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhc----CCCC--HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEE
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRT----GEYP--WGIVKKAHELGLINGHIPASEQNMGQRASDTRGIT  118 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~----~~~p--~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~  118 (312)
                      +|+|.++++|+++++.+++|+++++.|...+++..    +.+|  +++|++|.+.||+++.+|+                
T Consensus         1 ~M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~----------------   64 (439)
T 2c12_A            1 MVDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPI----------------   64 (439)
T ss_dssp             -CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBG----------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCCh----------------
Confidence            48999999999999999999999999987766653    3455  8999999999999999997                


Q ss_pred             EcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHH
Q psy10338        119 FEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFER  198 (312)
Q Consensus       119 f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~  198 (312)
                                                                                                      
T Consensus        65 --------------------------------------------------------------------------------   64 (439)
T 2c12_A           65 --------------------------------------------------------------------------------   64 (439)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh-----------------------------hc
Q psy10338        199 EIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE-----------------------------AS  249 (312)
Q Consensus       199 ~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~-----------------------------g~  249 (312)
                                        +|||.|++..+.+.++|++++.|+++++.+.                             |+
T Consensus        65 ------------------~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~~G~  126 (439)
T 2c12_A           65 ------------------PLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGE  126 (439)
T ss_dssp             ------------------GGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHSSCHHHHHHHTGGGGSSCSC
T ss_pred             ------------------hhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Confidence                              7799999999999999999998887764321                             33


Q ss_pred             ccceeeecCCCCCC-----CcCCceeEEEEeCCEEEEeeeeeeeeCCC-----cccEEEEEecc
Q psy10338        250 GLGAYCVTEPGAGS-----DVNGVKTKAVKKGDEWILNGQKMWITNGG-----VANWQNRTRDF  303 (312)
Q Consensus       250 ~~~~~a~tEp~~gs-----d~~~~~t~A~~~~~g~~l~G~k~~vs~~~-----~ad~~~v~~~~  303 (312)
                      .++++++|||++||     |+.+++|+|++++|||+|||+|.||||+.     +||+++|++++
T Consensus       127 ~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~  190 (439)
T 2c12_A          127 PLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRV  190 (439)
T ss_dssp             CCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTTTTTSSCCSEEEEEEEE
T ss_pred             EEEEEEecCCCCCCCccccccccceeEEEEcCCEEEEEeEEEeecCCCccccccCcEEEEEEEc
Confidence            45689999999997     58889999999999999999999999997     99999999765

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=99.88  E-value=8.3e-23  Score=188.23  Aligned_cols=132  Identities=23%  Similarity=0.329  Sum_probs=116.5

Q ss_pred             HHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHH
Q psy10338         59 ALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK  138 (312)
Q Consensus        59 ~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~  138 (312)
                      +.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+                                    
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~------------------------------------   45 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAA------------------------------------   45 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCG------------------------------------
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCCh------------------------------------
Confidence            45788999999998888999999999999999999999999998                                    


Q ss_pred             HHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhccccccccccccc
Q psy10338        139 IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVS  218 (312)
Q Consensus       139 ~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~  218 (312)
                                                                                                    +|
T Consensus        46 ------------------------------------------------------------------------------~~   47 (366)
T 1r2j_A           46 ------------------------------------------------------------------------------EH   47 (366)
T ss_dssp             ------------------------------------------------------------------------------GG
T ss_pred             ------------------------------------------------------------------------------hh
Confidence                                                                                          67


Q ss_pred             CCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCCCCcCCceeE
Q psy10338        219 GGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAGSDVNGVKTK  271 (312)
Q Consensus       219 GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~gsd~~~~~t~  271 (312)
                      ||.|+++.+...++|++++.|.++++...                           |+ +.++++|||++|||+.+++|+
T Consensus        48 GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~  126 (366)
T 1r2j_A           48 GGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTR  126 (366)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCE
T ss_pred             CCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeE
Confidence            99999999999999999998888764321                           33 668999999999999999999


Q ss_pred             EEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        272 AVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |++++|||+|||+|.||||+.+|||++|++++++
T Consensus       127 A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~  160 (366)
T 1r2j_A          127 VRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED  160 (366)
T ss_dssp             EEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS
T ss_pred             EEEeCCEEEEEEEEecccCCcccCEEEEEEEeCC
Confidence            9999999999999999999999999999976653

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=99.88  E-value=2.9e-22  Score=194.71  Aligned_cols=141  Identities=35%  Similarity=0.583  Sum_probs=117.7

Q ss_pred             CCCHHHHHHHHHHHHhhhhcccchhhhhhhc-CCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCC
Q psy10338         49 ELNETQQEFQALARKFCREEIIPVAAEHDRT-GEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE  127 (312)
Q Consensus        49 ~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~-~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~  127 (312)
                      ++++||+++++.+++|+++++.|...+.+.. ..+|+++|+++.+.||+++.+|+                         
T Consensus        27 ~~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPe-------------------------   81 (577)
T 2z1q_A           27 DFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPE-------------------------   81 (577)
T ss_dssp             GCCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCG-------------------------
T ss_pred             CCCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCCh-------------------------
Confidence            4799999999999999999998885555433 36899999999999999999998                         


Q ss_pred             CccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcc
Q psy10338        128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV  207 (312)
Q Consensus       128 ~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~  207 (312)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (577)
T 2z1q_A           82 --------------------------------------------------------------------------------   81 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceeeecCC
Q psy10338        208 HNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYCVTEP  259 (312)
Q Consensus       208 g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a~tEp  259 (312)
                               +|||.|++..+...++|++ ..|++.++.+                            .|+.++|+++|||
T Consensus        82 ---------e~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp  151 (577)
T 2z1q_A           82 ---------EYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEP  151 (577)
T ss_dssp             ---------GGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBT
T ss_pred             ---------hhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCC
Confidence                     6688888888888888888 5565544321                            2555679999999


Q ss_pred             CCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        260 GAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      ++|||+.+++|+|+++  +++|+|||+|.||||+.+||+++|+++++
T Consensus       152 ~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~  198 (577)
T 2z1q_A          152 GSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD  198 (577)
T ss_dssp             TBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEET
T ss_pred             CCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeC
Confidence            9999999999999984  55899999999999999999999997654

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=190.53  Aligned_cols=62  Identities=23%  Similarity=0.461  Sum_probs=56.1

Q ss_pred             HhhhcccceeeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccCCC
Q psy10338        245 ALEASGLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFRYE  306 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~~~  306 (312)
                      +..|+.++++++|||+ +|||+.+++|+|++++|||+|||+|.||||+.+  |||++|++.++++
T Consensus       143 l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~  207 (428)
T 2wbi_A          143 LLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNT  207 (428)
T ss_dssp             HHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCT
T ss_pred             HhCCCeEEEEEEecCCcCCCCcccceEEEEEeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCc
Confidence            4457788899999999 999999999999999999999999999999988  9999999776543

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=99.86  E-value=4.5e-21  Score=187.01  Aligned_cols=140  Identities=28%  Similarity=0.408  Sum_probs=115.2

Q ss_pred             CCCHHHHH----HHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         49 ELNETQQE----FQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        49 ~l~~~~~~----l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .+++++++    +++.+++|+.+++.|.  ++|....+|+++|+++.+.||+++.+|+                      
T Consensus        45 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~~~~~~l~e~Gl~~l~~P~----------------------  100 (607)
T 2uxw_A           45 VLNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEETTWQGLKELGAFGLQVPS----------------------  100 (607)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCHHHHHHHHHTTTTCTTSCG----------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCHHHHHHHHHcCCcCCCCCh----------------------
Confidence            45777754    8899999999887653  4577788999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus       101 --------------------------------------------------------------------------------  100 (607)
T 2uxw_A          101 --------------------------------------------------------------------------------  100 (607)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a~  256 (312)
                                  +|||.|++..+...+.|+++++|.++++.+                            .|+.++++++
T Consensus       101 ------------e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~al  168 (607)
T 2uxw_A          101 ------------ELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCL  168 (607)
T ss_dssp             ------------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred             ------------hhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEe
Confidence                        567777777777777777777666654322                            2555779999


Q ss_pred             cCCCCCCCcCCceeEEEEeC--CEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKG--DEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~--~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||++|||+.+++|+|++++  ++|+|||+|.|||++..||+++|++.+.
T Consensus       169 TEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~  218 (607)
T 2uxw_A          169 TEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTP  218 (607)
T ss_dssp             CBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEE
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEec
Confidence            99999999999999999973  4899999999999999999999986553

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=99.85  E-value=2.1e-21  Score=183.02  Aligned_cols=143  Identities=19%  Similarity=0.270  Sum_probs=117.7

Q ss_pred             cccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEccee
Q psy10338         44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVR  123 (312)
Q Consensus        44 ~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~  123 (312)
                      ..|+|.++++|+++++.+++|+. ++.|.+.++|+.+.+|+++|++|.+.||+++.+|+                     
T Consensus        14 ~~m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~---------------------   71 (439)
T 3m9v_A           14 TGLYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPA---------------------   71 (439)
T ss_dssp             STTSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCG---------------------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCCh---------------------
Confidence            34999999999999999999997 58888889999999999999999999999999998                     


Q ss_pred             cCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHH
Q psy10338        124 VPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM  203 (312)
Q Consensus       124 Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~  203 (312)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (439)
T 3m9v_A           72 --------------------------------------------------------------------------------   71 (439)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcccccccccccccCCCC-hhHhHHHHHHHHHHccCcchHHHh---------------------------------hhc
Q psy10338        204 LLGVHNCNVFLVSVSGGLE-LSVFDGCLVAEELAYGCTGIMTAL---------------------------------EAS  249 (312)
Q Consensus       204 ~~~~g~~~~~~p~~~GG~g-~~~~~~~~v~e~l~~~~~~~~~~~---------------------------------~g~  249 (312)
                                   +|||.| .++.+++.++|++++.|.++++.+                                 .|+
T Consensus        72 -------------~~GG~gl~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~  138 (439)
T 3m9v_A           72 -------------ELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGD  138 (439)
T ss_dssp             -------------GGTSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred             -------------hhCCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Confidence                         667777 677777788888887777655321                                 134


Q ss_pred             ccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        250 GLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       250 ~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      .++++++|||++  |...++|+   ++|||+|||+|.||||+.+|||++|.+.++++
T Consensus       139 ~~~~~a~tEp~~--~~~~~~t~---~~~g~vlnG~K~~~s~a~~Ad~~~v~art~~~  190 (439)
T 3m9v_A          139 AVVCSGIKDHHT--AVTTLRPD---GAGGWLLSGRKTLVSMAPVGTHFVINARTDGT  190 (439)
T ss_dssp             CCEEEECEECTT--CCCEEEEC---SSSCEEEEEEEEEETTGGGCSEEEECEEECC-
T ss_pred             ceEEEeecCCCC--CCCceeec---cCCEEEEEeEEEeecCccccCEEEEEEEecCC
Confidence            567999999975  44444433   78899999999999999999999999766543

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=99.84  E-value=3.9e-21  Score=178.68  Aligned_cols=140  Identities=21%  Similarity=0.285  Sum_probs=115.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |.+.+|+||+++++.+++|+. ++.|.+.++|+++.+|+++|++|.+.||+++.+|+                       
T Consensus         5 ~~~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~-----------------------   60 (395)
T 3mxl_A            5 LRAPLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPA-----------------------   60 (395)
T ss_dssp             SSSCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCT-----------------------
T ss_pred             cccCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCCh-----------------------
Confidence            567899999999999999997 48899999999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        61 --------------------------------------------------------------------------------   60 (395)
T 3mxl_A           61 --------------------------------------------------------------------------------   60 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCC-hhHhHHHHHHHHHHccCcchHHHh---------------------------------hhccc
Q psy10338        206 GVHNCNVFLVSVSGGLE-LSVFDGCLVAEELAYGCTGIMTAL---------------------------------EASGL  251 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g-~~~~~~~~v~e~l~~~~~~~~~~~---------------------------------~g~~~  251 (312)
                                 +|||.| .+..+.+.++|+++++|.++++..                                 .|+.+
T Consensus        61 -----------~~GG~g~~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~  129 (395)
T 3mxl_A           61 -----------ELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAA  129 (395)
T ss_dssp             -----------TTTSCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCC
T ss_pred             -----------hhCCCCCcCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcE
Confidence                       567777 777777788888888777655321                                 13346


Q ss_pred             ceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       252 ~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      .++++|||++|+  ..++|   +++|||+|||+|.||||+.+|||++|++.+++
T Consensus       130 ~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~  178 (395)
T 3mxl_A          130 VCGALKDAPGVV--TELHS---DGAGGWLLSGRKVLVSMAPIATHFFVHAQRRD  178 (395)
T ss_dssp             EECCCSBCTTCC--CEEEE---CSSSCEEEEEEEEEETTGGGCSEECCCEEEEC
T ss_pred             EEEEecCCCCCC--CceEE---ecCCEEEEeeEEEEecCccccCEEEEEEEeCC
Confidence            699999998653  33333   37889999999999999999999999866543

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=99.84  E-value=6.3e-21  Score=178.45  Aligned_cols=134  Identities=12%  Similarity=-0.023  Sum_probs=108.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      .+|.++++|+++++.+++|+++ +.|.+.++|+.+.+|+++|++|.+.||+++.+|+                       
T Consensus        14 ~~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~-----------------------   69 (414)
T 2or0_A           14 RENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPR-----------------------   69 (414)
T ss_dssp             ---------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCG-----------------------
T ss_pred             ccCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCch-----------------------
Confidence            4788999999999999999985 8888888999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        70 --------------------------------------------------------------------------------   69 (414)
T 2or0_A           70 --------------------------------------------------------------------------------   69 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcc------------------------cceeeecCCCC
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASG------------------------LGAYCVTEPGA  261 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~------------------------~~~~a~tEp~~  261 (312)
                                 +|||.|+++.+.+.++|++++.|.++++.+..+.                        +.++++|    
T Consensus        70 -----------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~t----  134 (414)
T 2or0_A           70 -----------LYGGYEVHPREFAETVMGVAALDGASGWVTGIVGVHPWELAFADPQVQEEIWGEDNDTWMASPYA----  134 (414)
T ss_dssp             -----------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTHHHHHTTSCHHHHHHHHSSCTTCCEECCCS----
T ss_pred             -----------hhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhCCHHHHHHHHccCCCeEEEeccC----
Confidence                       7799999999999999999999999886543221                        1222222    


Q ss_pred             CCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        262 GSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       262 gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                            ++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       135 ------p~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~  171 (414)
T 2or0_A          135 ------PMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVG  171 (414)
T ss_dssp             ------CCEEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEC
T ss_pred             ------CCceeEEECCeEEEEeeEeccCCCchhhEEEEEEEec
Confidence                  4789999999999999999999999999999997654

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=99.79  E-value=4.2e-19  Score=166.41  Aligned_cols=130  Identities=21%  Similarity=0.208  Sum_probs=108.8

Q ss_pred             CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCC
Q psy10338         48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE  127 (312)
Q Consensus        48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~  127 (312)
                      .++++  +++++.+++|++ ++.|.+.++|+.+.+|+++|++|.+.||+++.+|+                         
T Consensus        33 ~~~~~--~~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~-------------------------   84 (422)
T 2jbr_A           33 PDVSG--VSMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPK-------------------------   84 (422)
T ss_dssp             CCCSS--CCHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCG-------------------------
T ss_pred             CCCCH--HHHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCch-------------------------
Confidence            33444  468999999997 58888888899999999999999999999999998                         


Q ss_pred             CccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcc
Q psy10338        128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV  207 (312)
Q Consensus       128 ~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~  207 (312)
                                                                                                      
T Consensus        85 --------------------------------------------------------------------------------   84 (422)
T 2jbr_A           85 --------------------------------------------------------------------------------   84 (422)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhc------------------------ccceeeecCCCCCC
Q psy10338        208 HNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEAS------------------------GLGAYCVTEPGAGS  263 (312)
Q Consensus       208 g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~------------------------~~~~~a~tEp~~gs  263 (312)
                               +|||.|+++.+...++|+++++|.++++.+..+                        .+.++++|      
T Consensus        85 ---------e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~t------  149 (422)
T 2jbr_A           85 ---------VYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSHQIAMFSKQLQDEIWLKDPDATASSSIA------  149 (422)
T ss_dssp             ---------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCEEEECS------
T ss_pred             ---------hcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHHhCCHHHHHHHHccCCCeEEEeecC------
Confidence                     789999999999999999999999988643311                        12233333      


Q ss_pred             CcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        264 DVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       264 d~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                          ++|+|++++|||+|||+|.||||+.+|||++|++.++
T Consensus       150 ----p~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~  186 (422)
T 2jbr_A          150 ----PFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRF  186 (422)
T ss_dssp             ----CCSEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEE
T ss_pred             ----CCeeEEEeCCEEEEeeeEeeecCCccccEEEEEEEec
Confidence                4789999999999999999999999999999996654

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=99.78  E-value=1.1e-18  Score=161.96  Aligned_cols=123  Identities=14%  Similarity=0.081  Sum_probs=105.7

Q ss_pred             HHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCc
Q psy10338         56 EFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGA  135 (312)
Q Consensus        56 ~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~  135 (312)
                      ++++.+++|+++ +.|.+.++|+.+.+|+++|++|.+.||+++.+|+                                 
T Consensus        11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~---------------------------------   56 (394)
T 2rfq_A           11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPE---------------------------------   56 (394)
T ss_dssp             HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCG---------------------------------
T ss_pred             HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCch---------------------------------
Confidence            688999999974 8888888999999999999999999999999998                                 


Q ss_pred             cHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccc
Q psy10338        136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLV  215 (312)
Q Consensus       136 G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p  215 (312)
                                                                                                      
T Consensus        57 --------------------------------------------------------------------------------   56 (394)
T 2rfq_A           57 --------------------------------------------------------------------------------   56 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCChhHhHHHHHHHHHHccCcchHHHhhhc------------------------ccceeeecCCCCCCCcCCceeE
Q psy10338        216 SVSGGLELSVFDGCLVAEELAYGCTGIMTALEAS------------------------GLGAYCVTEPGAGSDVNGVKTK  271 (312)
Q Consensus       216 ~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~------------------------~~~~~a~tEp~~gsd~~~~~t~  271 (312)
                       +|||.|++..+.+.++|+++++|.++++.+..+                        .+.++++|          ++|+
T Consensus        57 -~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~g~~~~~~a~t----------p~t~  125 (394)
T 2rfq_A           57 -QWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYA----------PMGA  125 (394)
T ss_dssp             -GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHSSCTTCCEEEECS----------CSEE
T ss_pred             -hhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCeEEEeccC----------CCce
Confidence             789999999999999999999999988653311                        12233332          3789


Q ss_pred             EEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        272 AVKKGDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                      |++++|||+|||+|.||||+.+|||++|++.+
T Consensus       126 A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~  157 (394)
T 2rfq_A          126 GQVVDGGYTVNGAWAWSSGCDHASWAVLGGPV  157 (394)
T ss_dssp             EEEETTEEEEEEEEEEETTGGGCSEEEEEEEE
T ss_pred             EEEeCCeEEEeeeEeccCCCcccceEEEeeee
Confidence            99999999999999999999999999999665

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.50  E-value=8.4e-15  Score=144.18  Aligned_cols=61  Identities=30%  Similarity=0.452  Sum_probs=55.2

Q ss_pred             HHhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeC-CCcccEEEEEeccC
Q psy10338        244 TALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITN-GGVANWQNRTRDFR  304 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~-~~~ad~~~v~~~~~  304 (312)
                      .+..|+.++|+++|||++|||+.+++|+|+++  +|+|+||     |+|.|||| +.+|||++|++.++
T Consensus       125 ~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~a~~Ad~~lV~Ar~~  193 (659)
T 1w07_A          125 LANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLI  193 (659)
T ss_dssp             HHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEE
T ss_pred             HHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCCCCCCCEEEEEEEEC
Confidence            34568889999999999999999999999998  6899999     99999999 89999999996554

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=99.48  E-value=5.3e-14  Score=130.23  Aligned_cols=100  Identities=38%  Similarity=0.497  Sum_probs=91.3

Q ss_pred             ccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy10338         98 GHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG  177 (312)
Q Consensus        98 ~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg  177 (312)
                      +.+.+.++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||
T Consensus       199 v~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg  278 (387)
T 2d29_A          199 LKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFG  278 (387)
T ss_dssp             EEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred             eeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC
Confidence            33333678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhHHHHHHhhhHH
Q psy10338        178 VPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       178 ~~l~~~q~v~~~l~~~a~~~  197 (312)
                      +|+.++|.+|++++......
T Consensus       279 ~~i~~~q~vq~~la~~~~~~  298 (387)
T 2d29_A          279 RPIAEFEGVSFKLAEAATEL  298 (387)
T ss_dssp             EEGGGSHHHHHHHHHHHHHH
T ss_pred             cchHhhHHHHHHHHHHHHHH
Confidence            99999999999977665543

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=99.47  E-value=5.8e-14  Score=130.68  Aligned_cols=95  Identities=37%  Similarity=0.566  Sum_probs=88.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       221 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~  300 (404)
T 2jif_A          221 PENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFD  300 (404)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       301 ~q~vq~~la~~~~~~  315 (404)
T 2jif_A          301 FQGLQHQVAHVATQL  315 (404)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999977665543

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=99.47  E-value=5.7e-14  Score=129.65  Aligned_cols=95  Identities=58%  Similarity=0.782  Sum_probs=89.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       197 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~  276 (379)
T 1ukw_A          197 IHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIAN  276 (379)
T ss_dssp             CCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGG
T ss_pred             ccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       277 ~q~vq~~la~~~~~~  291 (379)
T 1ukw_A          277 FQAIQFKLVDMLIGI  291 (379)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977665543

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=99.47  E-value=6.3e-14  Score=129.02  Aligned_cols=95  Identities=38%  Similarity=0.546  Sum_probs=88.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       191 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~  270 (372)
T 2dvl_A          191 PEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKE  270 (372)
T ss_dssp             CCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             cccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhh
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       271 ~q~vq~~la~~~~~~  285 (372)
T 2dvl_A          271 HQAIAFKIADMHVKI  285 (372)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=99.47  E-value=6.4e-14  Score=129.58  Aligned_cols=96  Identities=27%  Similarity=0.397  Sum_probs=89.5

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA  181 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~  181 (312)
                      +.++++|+++.+++++.||||+||.++++|.++.||.+++..++.+|+.+++.++|+++++++.+++|+++|++||+|+.
T Consensus       203 ~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~  282 (385)
T 2pg0_A          203 RKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVS  282 (385)
T ss_dssp             CCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGG
T ss_pred             CCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhHH
Q psy10338        182 AHQGMYLKIQYVSIFE  197 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~~  197 (312)
                      ++|.+|++++......
T Consensus       283 ~~q~v~~~la~~~~~~  298 (385)
T 2pg0_A          283 EFQTVQFRLAEMATEI  298 (385)
T ss_dssp             GSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999977655543

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=99.47  E-value=5.6e-14  Score=130.34  Aligned_cols=95  Identities=38%  Similarity=0.665  Sum_probs=89.4

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +++++|+++.++++++||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       211 ~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~  290 (393)
T 3pfd_A          211 KERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSD  290 (393)
T ss_dssp             ECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhh
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       291 ~q~vq~~la~~~~~~  305 (393)
T 3pfd_A          291 NQGVQFMLADMAMKI  305 (393)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977655543

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=99.47  E-value=7.3e-14  Score=129.46  Aligned_cols=95  Identities=41%  Similarity=0.645  Sum_probs=89.1

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA  181 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~  181 (312)
                      +.++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.
T Consensus       198 ~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~  277 (391)
T 2vig_A          198 KKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLT  277 (391)
T ss_dssp             CCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGG
T ss_pred             CccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcch
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhH
Q psy10338        182 AHQGMYLKIQYVSIF  196 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~  196 (312)
                      ++|.+|++++.....
T Consensus       278 ~~q~v~~~la~~~~~  292 (391)
T 2vig_A          278 KLQVIQFKLADMALA  292 (391)
T ss_dssp             GSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999997765554

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=99.47  E-value=6.1e-14  Score=129.61  Aligned_cols=94  Identities=41%  Similarity=0.638  Sum_probs=88.6

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.++++++||||+||.++++|.++.||.+++..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       202 ~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~  281 (383)
T 1buc_A          202 KEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCK  281 (383)
T ss_dssp             ECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             ccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhh
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|++++.....
T Consensus       282 ~q~vq~~la~~~~~  295 (383)
T 1buc_A          282 FQSISFKLADMKMQ  295 (383)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999997765554

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=99.46  E-value=6.8e-14  Score=129.90  Aligned_cols=100  Identities=64%  Similarity=0.943  Sum_probs=91.1

Q ss_pred             ccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy10338         98 GHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG  177 (312)
Q Consensus        98 ~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg  177 (312)
                      +.+-+.++++|+++.++++++||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||
T Consensus       206 v~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG  285 (396)
T 1egd_A          206 IQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG  285 (396)
T ss_dssp             EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETT
T ss_pred             eeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence            33333678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhHHHHHHhhhHH
Q psy10338        178 VPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       178 ~~l~~~q~v~~~l~~~a~~~  197 (312)
                      +|+.++|.+|++++......
T Consensus       286 ~~i~~~q~vq~~la~~~~~~  305 (396)
T 1egd_A          286 KLLVEHQAISFMLAEMAMKV  305 (396)
T ss_dssp             EEGGGSHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHH
Confidence            99999999999977665543

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=99.46  E-value=6.3e-14  Score=130.43  Aligned_cols=95  Identities=36%  Similarity=0.494  Sum_probs=89.6

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      +++++|+++.++++|.||||+||.++++|.++.|+.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       222 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~  301 (403)
T 3r7k_A          222 RLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTG  301 (403)
T ss_dssp             ECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             cccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhh
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       302 ~q~vq~~la~~~~~~  316 (403)
T 3r7k_A          302 RQIIRHKLAEMARQV  316 (403)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999977665543

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=99.46  E-value=1.3e-13  Score=133.97  Aligned_cols=93  Identities=41%  Similarity=0.580  Sum_probs=87.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.+++++.|+||+||.+++||.++.||.+++..++.+|+.+++.++|.++++++.+++|+++|+|||+|+.+
T Consensus       219 ~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~  298 (577)
T 2z1q_A          219 EEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGR  298 (577)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGG
T ss_pred             CCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|++++....
T Consensus       299 ~q~vq~~La~~~~  311 (577)
T 2z1q_A          299 FGLIQQKLGEMAS  311 (577)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999765444

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=99.46  E-value=8.5e-14  Score=135.43  Aligned_cols=93  Identities=34%  Similarity=0.514  Sum_probs=88.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.++.|+.+++..++.+|+.+++.++|.++++++.+++|+++|.+||+|+++
T Consensus       224 ~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~  303 (597)
T 3owa_A          224 EEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIAR  303 (597)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             ccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|++++....
T Consensus       304 ~q~vq~~LA~m~~  316 (597)
T 3owa_A          304 FPLIQEKLANMAA  316 (597)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999655444

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.45  E-value=9.9e-14  Score=128.67  Aligned_cols=100  Identities=27%  Similarity=0.365  Sum_probs=90.4

Q ss_pred             ccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy10338         98 GHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG  177 (312)
Q Consensus        98 ~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg  177 (312)
                      +.+.+...++|+++.++++|+||||+||.++++|.++.||.+++..++.+|+.+++.++|+++++++.+++|+++|++||
T Consensus       205 v~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG  284 (393)
T 1rx0_A          205 LSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFG  284 (393)
T ss_dssp             EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred             eEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC
Confidence            33333567789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhHHHHHHhhhHH
Q psy10338        178 VPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       178 ~~l~~~q~v~~~l~~~a~~~  197 (312)
                      +|+.++|.+|++++......
T Consensus       285 ~~i~~~q~vq~~la~~~~~~  304 (393)
T 1rx0_A          285 EPLASNQYLQFTLADMATRL  304 (393)
T ss_dssp             EEGGGCHHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHHHH
Confidence            99999999999977655543

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=99.45  E-value=7.5e-14  Score=129.91  Aligned_cols=95  Identities=32%  Similarity=0.460  Sum_probs=89.5

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.++++|+||||+||.++++|.++.|+.+.+..++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       219 ~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~  298 (403)
T 3p4t_A          219 KLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLIS  298 (403)
T ss_dssp             ECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       299 ~q~vq~~la~~~~~~  313 (403)
T 3p4t_A          299 RQAVQNTLAGMARRI  313 (403)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999977665543

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.45  E-value=8.4e-14  Score=129.17  Aligned_cols=96  Identities=32%  Similarity=0.428  Sum_probs=89.5

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA  181 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~  181 (312)
                      +.++++|+++.+++++.||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.
T Consensus       209 ~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~  288 (394)
T 1ivh_A          209 KKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIG  288 (394)
T ss_dssp             CCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGG
T ss_pred             cccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchh
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhHH
Q psy10338        182 AHQGMYLKIQYVSIFE  197 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~~  197 (312)
                      ++|.+|++++......
T Consensus       289 ~~q~vq~~la~~~~~~  304 (394)
T 1ivh_A          289 HFQLMQGKMADMYTRL  304 (394)
T ss_dssp             GSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            9999999977665543

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=99.45  E-value=8.1e-14  Score=130.16  Aligned_cols=95  Identities=29%  Similarity=0.454  Sum_probs=88.7

Q ss_pred             CCCccCCcCCC--cccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338        103 SEQNMGQRASD--TRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI  180 (312)
Q Consensus       103 ~~~~~g~~~~~--~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l  180 (312)
                      +++++|+++.+  +++|+||||+||+++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+
T Consensus       225 ~~~~~g~r~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i  304 (415)
T 4hr3_A          225 MLPTMGFYDEPGGHGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPL  304 (415)
T ss_dssp             ECCBTTBCCTTTCEEEEEEEEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEG
T ss_pred             CCCccccCCCCCCeeEEEEccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcH
Confidence            47789999887  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhHH
Q psy10338        181 AAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       181 ~~~q~v~~~l~~~a~~~  197 (312)
                      .++|.+|++++......
T Consensus       305 ~~~q~vq~~la~~~~~~  321 (415)
T 4hr3_A          305 VNLGGNRERIADARIAI  321 (415)
T ss_dssp             GGSTTHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHH
Confidence            99999999977655543

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=99.44  E-value=1.3e-13  Score=127.67  Aligned_cols=95  Identities=37%  Similarity=0.521  Sum_probs=82.5

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.++.|+.+.+..++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       206 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~  285 (387)
T 3nf4_A          206 PEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIID  285 (387)
T ss_dssp             CCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CTTT
T ss_pred             cccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|++++......
T Consensus       286 ~q~v~~~la~~~~~~  300 (387)
T 3nf4_A          286 HQGLGFLLADMAAAV  300 (387)
T ss_dssp             C-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999977665543

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=99.44  E-value=5.9e-14  Score=128.95  Aligned_cols=95  Identities=31%  Similarity=0.432  Sum_probs=88.3

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHH-HhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIA-MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA  181 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~-~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~  181 (312)
                      .++++|+++.++++++||||+||.++++|.++.||.++ +..++.+|+.+++.++|+++++++.+++|+++|++||+|+.
T Consensus       180 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~  259 (366)
T 1r2j_A          180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLG  259 (366)
T ss_dssp             CSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGG
T ss_pred             CcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCchh
Confidence            45789999999999999999999999999999999998 88999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhHH
Q psy10338        182 AHQGMYLKIQYVSIFE  197 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~~  197 (312)
                      ++|.+|+++.......
T Consensus       260 ~~q~v~~~la~~~~~~  275 (366)
T 1r2j_A          260 DHQLVAGHIADLWTAE  275 (366)
T ss_dssp             GSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999977655543

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=99.43  E-value=1.7e-13  Score=133.53  Aligned_cols=94  Identities=34%  Similarity=0.487  Sum_probs=89.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.+++++.|+||+||.++++|.+++||.+++..++.+|+.+++.++|+++++++.+++|+++|.|||+||++
T Consensus       248 ~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~  327 (607)
T 2uxw_A          248 PEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHN  327 (607)
T ss_dssp             CCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|++++.....
T Consensus       328 ~~~vq~~La~~~~~  341 (607)
T 2uxw_A          328 FGLIQEKLARMVML  341 (607)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999997765554

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=99.42  E-value=1.9e-13  Score=126.95  Aligned_cols=93  Identities=23%  Similarity=0.374  Sum_probs=87.3

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||+++++|. +.||.+.+..++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       213 ~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~  291 (399)
T 3swo_A          213 IHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSN  291 (399)
T ss_dssp             CCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhh
Confidence            467889999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|++++.....
T Consensus       292 ~q~vq~~la~~~~~  305 (399)
T 3swo_A          292 YQLTQEKLANMTVE  305 (399)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999997665554

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=99.42  E-value=1.9e-13  Score=126.91  Aligned_cols=95  Identities=40%  Similarity=0.596  Sum_probs=89.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||+++++|.++.|+.+.+..++..|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus       201 ~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~  280 (397)
T 3mpi_A          201 NLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGD  280 (397)
T ss_dssp             ECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             cCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhHH
Q psy10338        183 HQGMYLKIQYVSIFE  197 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~  197 (312)
                      +|.+|+++.......
T Consensus       281 ~q~vq~~la~~~~~~  295 (397)
T 3mpi_A          281 FQMNQDMIAQMAVEV  295 (397)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999976655543

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=99.42  E-value=2.9e-13  Score=127.23  Aligned_cols=94  Identities=32%  Similarity=0.431  Sum_probs=87.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCcc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIA  181 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg-~~l~  181 (312)
                      .++++|+++.++++|.||||+||++++||.++.||.+++..++.+|+.+++.++|+++++++.+++|+++|++|| +|++
T Consensus       229 ~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~  308 (438)
T 3mkh_A          229 HVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLL  308 (438)
T ss_dssp             CCCCSSCTTCCCCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGG
T ss_pred             cCCCcCCcCCCceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeecc
Confidence            466789999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             cchhhHHHHHHhhhH
Q psy10338        182 AHQGMYLKIQYVSIF  196 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~  196 (312)
                      ++|.+|++++.....
T Consensus       309 ~~q~vq~~la~~~~~  323 (438)
T 3mkh_A          309 ERQAFADLLSGVKIQ  323 (438)
T ss_dssp             GSHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999996655443

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=129.02  Aligned_cols=93  Identities=32%  Similarity=0.400  Sum_probs=86.4

Q ss_pred             CCCccCCcCCC---cccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy10338        103 SEQNMGQRASD---TRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVP  179 (312)
Q Consensus       103 ~~~~~g~~~~~---~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~  179 (312)
                      .++++|+++.+   +++|+||||+||.++++|.++.||.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|
T Consensus       232 ~~~~~G~~~~~~~~~~~v~fddv~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~  311 (428)
T 2wbi_A          232 PLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKK  311 (428)
T ss_dssp             ECCBTTBCCGGGCCEEEEEEEEEEEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE
T ss_pred             CCCccccCCCCCCCeEEEEeCceEECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC
Confidence            56788999885   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhh
Q psy10338        180 IAAHQGMYLKIQYVSI  195 (312)
Q Consensus       180 l~~~q~v~~~l~~~a~  195 (312)
                      +.++|.+|++++....
T Consensus       312 i~~~q~vq~~la~~~~  327 (428)
T 2wbi_A          312 LYAHEVVAHWIAESRI  327 (428)
T ss_dssp             GGGSHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            9999999999665443

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=99.40  E-value=4.1e-13  Score=124.60  Aligned_cols=94  Identities=34%  Similarity=0.484  Sum_probs=86.8

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA  181 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~  181 (312)
                      +...++|+++.+++++.||||+||.++++|. +.|+.+.+..++.+|+.+++.++|+++++++.+++|+++|.+||+|+.
T Consensus       210 ~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~  288 (396)
T 3ii9_A          210 AIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLA  288 (396)
T ss_dssp             BCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGG
T ss_pred             cccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchh
Confidence            3567889999999999999999999999987 899999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhH
Q psy10338        182 AHQGMYLKIQYVSIF  196 (312)
Q Consensus       182 ~~q~v~~~l~~~a~~  196 (312)
                      ++|.+|+++......
T Consensus       289 ~~q~vq~~la~~~~~  303 (396)
T 3ii9_A          289 ANQLIQKKLADMQTE  303 (396)
T ss_dssp             GSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999996654443

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=99.40  E-value=3.4e-13  Score=124.70  Aligned_cols=93  Identities=30%  Similarity=0.448  Sum_probs=86.8

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||+++++ .++.|+...+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       201 ~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~  279 (385)
T 2eba_A          201 VKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAK  279 (385)
T ss_dssp             CCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGG
T ss_pred             cccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHh
Confidence            4578899999999999999999999999 788999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|++++.....
T Consensus       280 ~q~vq~~la~~~~~  293 (385)
T 2eba_A          280 KQLVQAKLAEMLAW  293 (385)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999997765554

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=99.40  E-value=2.7e-13  Score=126.11  Aligned_cols=93  Identities=28%  Similarity=0.444  Sum_probs=87.3

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||+++++|. +.|+.+.+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       218 ~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~  296 (403)
T 3sf6_A          218 IKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGG  296 (403)
T ss_dssp             CCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             CCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchh
Confidence            567889999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhH
Q psy10338        183 HQGMYLKIQYVSIF  196 (312)
Q Consensus       183 ~q~v~~~l~~~a~~  196 (312)
                      +|.+|+++......
T Consensus       297 ~q~vq~~la~~~~~  310 (403)
T 3sf6_A          297 FQLTQQKLADMTLE  310 (403)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999997665543

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.39  E-value=3.7e-13  Score=129.39  Aligned_cols=105  Identities=21%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             HHHHHHHhccccccccc--ccccCCCChhHhHHHHHHHHH-HccCcchHH---------------------Hhhhcc---
Q psy10338        198 REIQLMLLGVHNCNVFL--VSVSGGLELSVFDGCLVAEEL-AYGCTGIMT---------------------ALEASG---  250 (312)
Q Consensus       198 ~~~~~~~~~~g~~~~~~--p~~~GG~g~~~~~~~~v~e~l-~~~~~~~~~---------------------~~~g~~---  250 (312)
                      .++++.+.+.||.++.+  |++|||.+..........++. +..|+...+                     +.+++.   
T Consensus        89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~~~~~p~~~t~~~~~~L~~~g~eqk~~~lp~l~sge~~p~  168 (541)
T 3djl_A           89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSH  168 (541)
T ss_dssp             HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHCCGGGGGGHHHHTCSCCCCC
T ss_pred             HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCCcccc
Confidence            45677889999999999  789998776665554444332 333332111                     112444   


Q ss_pred             ----------cceeeecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338        251 ----------LGAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDF  303 (312)
Q Consensus       251 ----------~~~~a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~  303 (312)
                                +.++++|||++|||+.+++|+|+++ +|+|+|||+|+|+| +.+|||++|++.+
T Consensus       169 ~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt  231 (541)
T 3djl_A          169 LLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQT  231 (541)
T ss_dssp             SSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEE
T ss_pred             cccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEE
Confidence                      5789999999999999999999999 78999999999999 9999999998665

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=99.38  E-value=4.8e-13  Score=125.63  Aligned_cols=92  Identities=28%  Similarity=0.364  Sum_probs=85.1

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.++++++||||+||+++++|.. .||...+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       244 ~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~  322 (436)
T 2ix5_A          244 IPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAA  322 (436)
T ss_dssp             CCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             cccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhh
Confidence            5667899999999999999999999999876 689999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|++++....
T Consensus       323 ~q~vq~~la~~~~  335 (436)
T 2ix5_A          323 FQLNQQKLVQMLG  335 (436)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999665544

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=99.37  E-value=8.3e-13  Score=122.36  Aligned_cols=92  Identities=34%  Similarity=0.505  Sum_probs=84.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      .++++|+++.+++++.||||+||.++++|.. .|+...+..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus       204 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~  282 (392)
T 1siq_A          204 IQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLAR  282 (392)
T ss_dssp             CCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             ccccccccCCceEEEEEccEEECHHHcCCcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhh
Confidence            4567899999999999999999999999876 689888899999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|++++....
T Consensus       283 ~q~vq~~la~~~~  295 (392)
T 1siq_A          283 NQLIQKKLADMLT  295 (392)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999766544

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=99.37  E-value=5.9e-13  Score=125.21  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=90.5

Q ss_pred             cccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHH-HHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHh-hc
Q psy10338         97 NGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK-IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALE-RK  174 (312)
Q Consensus        97 ~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~-~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~-R~  174 (312)
                      |+.+-+.++++|+++.++++++||||+||.++++|.++.|+. +.+..++.+|+.+++.++|+++++++.+++|+++ |.
T Consensus       225 Gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~  304 (439)
T 2c12_A          225 AYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTR  304 (439)
T ss_dssp             GEEEEECCCBSSCTTCCCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ceEeCCcccccccCCCCceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcee
Confidence            344444678899999999999999999999999999999999 9999999999999999999999999999999997 78


Q ss_pred             cCCCCcccchhhHHHHHHhhhHH
Q psy10338        175 AFGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       175 ~fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                      +||+|+.++|.+|++++......
T Consensus       305 ~~G~~i~~~q~vq~~la~~~~~~  327 (439)
T 2c12_A          305 GGSKHIIEHQSVADKLIDCKIRL  327 (439)
T ss_dssp             TSSSCGGGSHHHHHHHHHHHHHH
T ss_pred             eCCeehhccHHHHHHHHHHHHHH
Confidence            99999999999999977655543

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=99.26  E-value=2.1e-12  Score=120.81  Aligned_cols=94  Identities=13%  Similarity=0.119  Sum_probs=84.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC--------Ccc-----HHHHHhhhhccChhHHHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE--------GAG-----FKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKY  169 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~--------g~G-----~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~y  169 (312)
                      .++++|+++.+++++.||||+||.++++|.+        +.|     +.+.+..++.+|+.+++.++|+++++++.+++|
T Consensus       209 ~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y  288 (422)
T 2jbr_A          209 NWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEAFKEK  288 (422)
T ss_dssp             CCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSCHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999975        666     777777888999999999999999999999999


Q ss_pred             HHhhc--cCCCCcccchhhHHHHHHhhhH
Q psy10338        170 ALERK--AFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       170 a~~R~--~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      +++|+  +||+|++++|.+|++++.....
T Consensus       289 a~~R~~~~fG~~i~~~q~vq~~la~~~~~  317 (422)
T 2jbr_A          289 QRNRVRAYTGANVGLATPALMRIAESTHQ  317 (422)
T ss_dssp             HTTCBCTTTCCBCTTCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCCccccCHHHHHHHHHHHHH
Confidence            99998  9999999999999997655543

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=99.22  E-value=5e-12  Score=117.10  Aligned_cols=94  Identities=21%  Similarity=0.126  Sum_probs=83.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCcccc--------CC----ccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLG--------EG----AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYA  170 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~--------~g----~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya  170 (312)
                      .++++|+++.+++++.||||+||.++++|.        ++    .|+.+....+..+|+.+++.++|+++++++.+++|+
T Consensus       181 ~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya  260 (394)
T 2rfq_A          181 VWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQ  260 (394)
T ss_dssp             CCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578899999999999999999999999986        33    356666667888999999999999999999999999


Q ss_pred             Hhhc---cCCCCcccchhhHHHHHHhhhH
Q psy10338        171 LERK---AFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       171 ~~R~---~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      ++|+   +||+|+.++|.+|++++.....
T Consensus       261 ~~R~~~~~fG~~i~~~q~vq~~la~~~~~  289 (394)
T 2rfq_A          261 GKRVRAAFAGEKAKDDPFAKVRIAEASSD  289 (394)
T ss_dssp             HHHHHHSCTTCGGGSCHHHHHHHHHHHHH
T ss_pred             ccCCcCCCCCcccccCHHHHHHHHHHHHH
Confidence            9999   9999999999999997655543

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=99.22  E-value=3.1e-12  Score=119.31  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=83.3

Q ss_pred             CCCCccCCcCCCcccEEEcceecCCCCcccc--------CC----ccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHH
Q psy10338        102 ASEQNMGQRASDTRGITFEDVRVPKENVLLG--------EG----AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKY  169 (312)
Q Consensus       102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~--------~g----~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~y  169 (312)
                      +.++++|+++.+++++.||||+||.++++|.        ++    .|+.+....++.+|+.+++.++|+++++++.+++|
T Consensus       197 ~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y  276 (414)
T 2or0_A          197 DTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAV  276 (414)
T ss_dssp             TCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCcccCCCcEEEccEEecHHHeeccccccccCCCccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999986        33    45666667788899999999999999999999999


Q ss_pred             HHhhccC-CCCcccchhhHHHHHHhhh
Q psy10338        170 ALERKAF-GVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       170 a~~R~~f-g~~l~~~q~v~~~l~~~a~  195 (312)
                      +++|++| |+|+.++|.+|++++....
T Consensus       277 a~~R~~f~G~~i~~~q~vq~~la~~~~  303 (414)
T 2or0_A          277 QKDRVAITGQKIKEDPYVLSAIGESAA  303 (414)
T ss_dssp             HTTCBCTTSCBGGGCHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCccccCHHHHHHHHHHHH
Confidence            9999999 9999999999999765544

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.12  E-value=7.1e-11  Score=116.17  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC------Ccc-----HHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE------GAG-----FKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL  171 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~------g~G-----~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~  171 (312)
                      ..+++|+++.+++++.||||+||.+++||..      |.+     +.+....+..+|+.+++.++|.++++++.+++|++
T Consensus       226 ~~~k~Gl~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~  305 (661)
T 2ddh_A          226 IGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSA  305 (661)
T ss_dssp             CCCCSSCTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568899999999999999999999999974      433     67888889999999999999999999999999999


Q ss_pred             hhccCCC-------CcccchhhHHHHHHhh
Q psy10338        172 ERKAFGV-------PIAAHQGMYLKIQYVS  194 (312)
Q Consensus       172 ~R~~fg~-------~l~~~q~v~~~l~~~a  194 (312)
                      +|++||.       |+.++|.+|+++....
T Consensus       306 ~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~  335 (661)
T 2ddh_A          306 VRRQSEIKQSEPEPQILDFQTQQYKLFPLL  335 (661)
T ss_dssp             HCBCSCSSTTSCCCBGGGSHHHHHHHHHHH
T ss_pred             hCcccCCCCCCccccccccHHHHHHHHHHH
Confidence            9999998       8999999999965443

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.10  E-value=8.7e-11  Score=112.91  Aligned_cols=90  Identities=22%  Similarity=0.327  Sum_probs=83.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      ..+++|+++.++++++|+||+   ++++|+++.||.+++..++.+|+.+++.++|+++++++.+++|+++|.+||+++.+
T Consensus       257 ~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~  333 (541)
T 3djl_A          257 LKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQ  333 (541)
T ss_dssp             ECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGG
T ss_pred             ccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCchhh
Confidence            456889999999999999996   89999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhh
Q psy10338        183 HQGMYLKIQYVSI  195 (312)
Q Consensus       183 ~q~v~~~l~~~a~  195 (312)
                      +|.+|+++.....
T Consensus       334 ~p~vq~~La~~~~  346 (541)
T 3djl_A          334 QPLMRHVLSRMAL  346 (541)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999655444

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.07  E-value=5.9e-11  Score=116.79  Aligned_cols=91  Identities=23%  Similarity=0.375  Sum_probs=80.9

Q ss_pred             CCCccC---CcCCCcccEEEcceecCCCCcccc------CCccH------HHHHhhhhccChhHHHHHHHHHHHHHHHHH
Q psy10338        103 SEQNMG---QRASDTRGITFEDVRVPKENVLLG------EGAGF------KIAMDTFDKTRPPVAAGAVGLAQRCLDEAT  167 (312)
Q Consensus       103 ~~~~~g---~~~~~~~~v~f~dv~Vp~~~llG~------~g~G~------~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~  167 (312)
                      ...++|   +++.+++.+.|+||+||.+++||.      +|.|+      .+....++.+|+.+++.++|+++++++.++
T Consensus       225 ~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~  304 (659)
T 1w07_A          225 IGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIAT  304 (659)
T ss_dssp             CCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccccccCCCCceEEEeccEEECHHHhcCCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456889   999999999999999999999996      66655      356778899999999999999999999999


Q ss_pred             HHHHhhccCCC-------CcccchhhHHHHHHh
Q psy10338        168 KYALERKAFGV-------PIAAHQGMYLKIQYV  193 (312)
Q Consensus       168 ~ya~~R~~fg~-------~l~~~q~v~~~l~~~  193 (312)
                      +|+++|++||.       |+.++|.+|+++...
T Consensus       305 ~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa~~  337 (659)
T 1w07_A          305 RYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPL  337 (659)
T ss_dssp             HHHHHCBCSCC---CCCCBGGGSHHHHHHHHHH
T ss_pred             HHHhcCcccCCCCCCcccchhccHHHHHHHHHH
Confidence            99999999998       899999999996443

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=99.03  E-value=3.1e-10  Score=105.03  Aligned_cols=90  Identities=19%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccc--cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI  180 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG--~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l  180 (312)
                      .++++|+++.++++++||||+||+++++|  .++.|+......+..+|+.+++.++|+++++++.+++|++     ++|+
T Consensus       202 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i  276 (395)
T 3mxl_A          202 NWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGG  276 (395)
T ss_dssp             CCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCCTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCS
T ss_pred             CchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCC
Confidence            57889999999999999999999999999  7888887776666778999999999999999999999999     5589


Q ss_pred             ccchhhHHHHHHhhhHH
Q psy10338        181 AAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       181 ~~~q~v~~~l~~~a~~~  197 (312)
                      .++|.+|+++.......
T Consensus       277 ~~~q~vq~~la~~~~~~  293 (395)
T 3mxl_A          277 EPRAGARALVAGLDTRL  293 (395)
T ss_dssp             CCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999976655543

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.02  E-value=4.8e-10  Score=106.29  Aligned_cols=58  Identities=14%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             HhhhcccceeeecCCCCC--------CCcCCceeEEE-EeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        245 ALEASGLGAYCVTEPGAG--------SDVNGVKTKAV-KKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       245 ~~~g~~~~~~a~tEp~~g--------sd~~~~~t~A~-~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      +..|..+.++++|||++|        ||+. +.|+++ +++|||+|||+|+|+|| ..||+++|+++++
T Consensus       133 l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          133 LRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             HHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            456788899999999976        6764 666664 78999999999999999 9999999997765

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.01  E-value=1.8e-09  Score=106.22  Aligned_cols=57  Identities=30%  Similarity=0.433  Sum_probs=52.6

Q ss_pred             hcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeC-CCcccEEEEEeccC
Q psy10338        248 ASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITN-GGVANWQNRTRDFR  304 (312)
Q Consensus       248 g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~-~~~ad~~~v~~~~~  304 (312)
                      |+.++|+++|||++|||+.+++|+|+++  +|+|+||     |+|.|||| +.+|||++|++.+.
T Consensus       130 Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~  194 (661)
T 2ddh_A          130 LEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLI  194 (661)
T ss_dssp             TSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEE
T ss_pred             CCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEc
Confidence            6677899999999999999999999998  7899999     99999999 88999999996554

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=98.99  E-value=4.9e-10  Score=106.40  Aligned_cols=60  Identities=15%  Similarity=0.048  Sum_probs=51.1

Q ss_pred             HHhhhcccceeeecCCCCC--------CCc-CCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        244 TALEASGLGAYCVTEPGAG--------SDV-NGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~g--------sd~-~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .+..|..++++++|||+++        ||+ ..++ +|++++|||+|||+|+|+||+..||+++|+++++
T Consensus       137 ~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad~~iV~art~  205 (490)
T 1u8v_A          137 YIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIA  205 (490)
T ss_dssp             HHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCSEEEECCSSC
T ss_pred             HHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccCEEEEEEecC
Confidence            3456888999999999874        775 4455 8999999999999999999999999999997654

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=98.96  E-value=8.8e-10  Score=103.46  Aligned_cols=87  Identities=24%  Similarity=0.287  Sum_probs=74.2

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccc--cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI  180 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG--~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l  180 (312)
                      .++++|+++.++++|+||||+||.++++|  .++.|+......+..+|+.+++.++|+++++++.+++|++     ++++
T Consensus       213 ~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i  287 (439)
T 3m9v_A          213 NWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE-----RRPE  287 (439)
T ss_dssp             CCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CCCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TCSS
T ss_pred             CcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCchHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCC
Confidence            56789999999999999999999999999  7788876665556668999999999999999999999999     4589


Q ss_pred             ccchhhHHHHHHhh
Q psy10338        181 AAHQGMYLKIQYVS  194 (312)
Q Consensus       181 ~~~q~v~~~l~~~a  194 (312)
                      .++|.+|+++....
T Consensus       288 ~~~~~vq~~la~~~  301 (439)
T 3m9v_A          288 PPQAAALTLVAEID  301 (439)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999854433

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=98.91  E-value=1.7e-09  Score=102.85  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=49.1

Q ss_pred             HHhhhcccceeeecCCCC--------CCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        244 TALEASGLGAYCVTEPGA--------GSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~--------gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .+..|..+.++|+|||++        |||+ .++++ .+++|||+|||+|.||||+..||+++|++.++
T Consensus       141 ~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~  207 (515)
T 3hwc_A          141 LLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYR  207 (515)
T ss_dssp             HHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECCCCC
T ss_pred             HHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEEEec
Confidence            345678888999999986        5787 66654 45689999999999999999999999997663

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=98.43  E-value=2.3e-07  Score=87.82  Aligned_cols=90  Identities=18%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             CCcC-CCcccEEEcceecCCCCcc--ccCCccHHHH--HhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338        108 GQRA-SDTRGITFEDVRVPKENVL--LGEGAGFKIA--MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA  182 (312)
Q Consensus       108 g~~~-~~~~~v~f~dv~Vp~~~ll--G~~g~G~~~~--~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~  182 (312)
                      |.+. .++++|+||||+||.+++|  |+++.|+...  +..++.+|+..++..+|.++.++..+..++..   |+  +.+
T Consensus       240 g~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~  314 (481)
T 2yyk_A          240 SSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADV  314 (481)
T ss_dssp             TTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGG
T ss_pred             cccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhh
Confidence            4443 5678899999999999998  6777777655  67888999999999999999999999988875   44  999


Q ss_pred             chhhHHHHHHhhhHHHHHHH
Q psy10338        183 HQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       183 ~q~v~~~l~~~a~~~~~~~~  202 (312)
                      +|.||++++.........+.
T Consensus       315 ~q~vq~~laem~~~leaar~  334 (481)
T 2yyk_A          315 YGHVQEKIAEIIVYLEAMRA  334 (481)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999998877766544433

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=98.11  E-value=4.3e-06  Score=79.31  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             CCcccEEEcceecCCCCcc--ccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHH
Q psy10338        112 SDTRGITFEDVRVPKENVL--LGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLK  189 (312)
Q Consensus       112 ~~~~~v~f~dv~Vp~~~ll--G~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~  189 (312)
                      ..+++|+||||+||.++++  |.++.|+.+++..+.+.|+.+++..+|.++.++..+......   ++  +.++|.||++
T Consensus       255 ~~~~~v~FddV~VP~e~vl~~g~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g--i~~~q~vq~~  329 (490)
T 1u8v_A          255 GQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG--AQKASHVKDK  329 (490)
T ss_dssp             CCCEEEEEEEEEEEGGGEEEESCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTCHHHHHH
T ss_pred             CceEEEEECceEeCHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chhcHHHHHH
Confidence            5668899999999999998  778889998888888899888776666666655555443322   33  8999999999


Q ss_pred             HHHhhhHHHHH
Q psy10338        190 IQYVSIFEREI  200 (312)
Q Consensus       190 l~~~a~~~~~~  200 (312)
                      ++.........
T Consensus       330 laem~~~leaa  340 (490)
T 1u8v_A          330 LIEMTHLNETL  340 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88776655443

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=98.02  E-value=1.6e-05  Score=75.59  Aligned_cols=83  Identities=12%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             cccEEEcceecCCCCcc--ccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHH
Q psy10338        114 TRGITFEDVRVPKENVL--LGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQ  191 (312)
Q Consensus       114 ~~~v~f~dv~Vp~~~ll--G~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~  191 (312)
                      ++.|+||||+||.|+++  |+++.++.+.+..++..|...++..++.++.++..+..+++..   |  +.++|.||++++
T Consensus       254 da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~~---G--i~~fq~Vq~kLa  328 (517)
T 4g5e_A          254 DGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHALIRQSVRAELMAGLAILITEHI---G--TNKIPAVQTRVA  328 (517)
T ss_dssp             EEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--CTTSHHHHHHHH
T ss_pred             ceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CcccHHHHHHHH
Confidence            46799999999999987  8888898888888999998888888898888888888888643   3  889999999998


Q ss_pred             HhhhHHHHHH
Q psy10338        192 YVSIFEREIQ  201 (312)
Q Consensus       192 ~~a~~~~~~~  201 (312)
                      .........+
T Consensus       329 Em~~~~E~~r  338 (517)
T 4g5e_A          329 KLIGFHQAML  338 (517)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777655443

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=97.92  E-value=1.3e-05  Score=76.14  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             cccEEEcceecCCCCcc--ccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHH
Q psy10338        114 TRGITFEDVRVPKENVL--LGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQ  191 (312)
Q Consensus       114 ~~~v~f~dv~Vp~~~ll--G~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~  191 (312)
                      +++|+||||+||.++++  |+++.||.+++..+...+.......++.+..++..+..++.   .||  +.++|.||++++
T Consensus       253 ~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~kLA  327 (515)
T 3hwc_A          253 DSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSARVA  327 (515)
T ss_dssp             EEEEEEEEEEEEGGGEEEESCTTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHHHH
T ss_pred             eEEEEECceEECHHHccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHHHH
Confidence            67899999999999999  88999998775554444321223334444444444444433   234  999999999988


Q ss_pred             HhhhHHHHH
Q psy10338        192 YVSIFEREI  200 (312)
Q Consensus       192 ~~a~~~~~~  200 (312)
                      .........
T Consensus       328 em~~~lEaa  336 (515)
T 3hwc_A          328 KLVAFHLAM  336 (515)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777665443

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=97.61  E-value=4e-05  Score=72.90  Aligned_cols=59  Identities=22%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             ccceeeecCCCCC--------CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCCCCCC
Q psy10338        250 GLGAYCVTEPGAG--------SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH  310 (312)
Q Consensus       250 ~~~~~a~tEp~~g--------sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~~~  310 (312)
                      ...+.++++|...        .|+ .++ ..++++|||+|||.|.|+||+..||+++|+..++++.+++
T Consensus       148 L~~~~a~~dPk~dRs~~~~~q~d~-~l~-Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~d  214 (517)
T 4g5e_A          148 LNCAPQFVDPQMDRSNPDAQQRSP-GLR-VIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPGD  214 (517)
T ss_dssp             CCEEEECCCCCC-----------C-BCE-EEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCGG
T ss_pred             ceeeeeeeCCCCCCCCCchhcCCC-ceE-EEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCcc
Confidence            3457788888531        122 132 3566789999999999999999999999987776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	7e-15
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	1e-07
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	3e-05
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	9e-14
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	6e-10
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	7e-08
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	8e-12
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	2e-09
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	5e-06
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	3e-11
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	9e-07
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	6e-05
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	7e-11
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	3e-06
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	5e-06
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	4e-10
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	9e-07
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	7e-06
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	3e-09
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	9e-06
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	3e-09
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	4e-08
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	4e-09
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	4e-06
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	0.001
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	2e-08
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	4e-04
d1w07a1	189	a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do	5e-08
d1w07a1	189	a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do	8e-06
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	1e-07
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	2e-06
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	1e-07
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	6e-04
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	1e-07
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	6e-04
d2c12a1	170	a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium	2e-07
d2c12a1	170	a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium	2e-06
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	2e-07
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	5e-07
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	2e-07
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	0.002
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	3e-07
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	0.001
d1ukwa1	152	a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro	4e-07
d3mdea1	154	a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro	6e-07
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	1e-06
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	7e-06
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	8e-04
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	6e-05
d2ddha1	183	a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-	2e-04
d2ddha1	183	a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-	2e-04
d1siqa1	154	a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC	3e-04
d1siqa1	154	a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC	6e-04

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 7e-15
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305
            SG  +GA  ++EP AGSDV  +K KA KKG+ +ILNG K WITNG  A+          
Sbjct: 120 ISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDL 179

Query: 306 EKPGHYQ 312
                 +
Sbjct: 180 AAVPASR 186

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 50  LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQNM 107
           L+E Q++ +    KF +E + P A E DR+ E+       K+   LG++    P      
Sbjct: 8   LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 67

Query: 108 GQ 109
           G 
Sbjct: 68  GL 69

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
              +G R S+T  + FED ++P  N +LG 
Sbjct: 206 LDKLGMRGSNTCELIFEDCKIPAAN-ILGH 234

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 67.3 bits (163), Expect = 9e-14
 Identities = 38/62 (61%), Positives = 43/62 (69%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
           + AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW         +    
Sbjct: 120 MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAP 179

Query: 311 YQ 312
             
Sbjct: 180 AS 181

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 56.1 bits (134), Expect = 6e-10
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
          EL E Q+EFQA ARKF REEIIPVAAE+DRTGEYP  ++K+A EL
Sbjct: 5  ELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL 49

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.0 bits (118), Expect = 7e-08
 Identities = 26/30 (86%), Positives = 26/30 (86%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
           E NMGQR SDTRGI FEDVRVPKENVL GE
Sbjct: 202 EINMGQRCSDTRGIVFEDVRVPKENVLTGE 231

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 8e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGH 99
          LNE Q+EFQ +A  F   E+ P  AE D+   +P  +++KA +LG    +
Sbjct: 10 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVY 59

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
            +YC+TEPG+GSD   + T A K+GD +ILNG K +I+  G ++ 
Sbjct: 125 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDI 169

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGE 133
                E+ +G  +  TR + FED  VP  N +  E
Sbjct: 197 SFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE 231

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 45  VFYS-ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPAS 103
           V+ S EL ET Q  +   R F  +E++P+AA+ D+   +P   VKK  ELGL+   +P  
Sbjct: 1   VYQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEE 60

Query: 104 EQNMGQRASDTRGITFEDVR 123
               G           E  R
Sbjct: 61  LSGAGLDYLAYSIALEEISR 80

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 9e-07
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 82  YPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
              GI      +      +   E  +G RAS T  + FED R+PKEN+L   G
Sbjct: 179 QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG 231

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
           G + ++EPG GSD     T A ++GD W+LNG K WITN   A+   
Sbjct: 123 GCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATV 169

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 58.9 bits (141), Expect = 7e-11
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
           + E    +++     R+F + E+ P AAE DRTG +PW +V+K  E 
Sbjct: 2  LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEF 49

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 25/61 (40%), Positives = 30/61 (49%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
           LGA+ +TEPG+GSD   +KTKA K    W LNG K +IT G VA                
Sbjct: 121 LGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPE 180

Query: 311 Y 311
            
Sbjct: 181 R 181

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
           E+ +G  ASDT  +  ED+ VP+E  LLGE
Sbjct: 204 EEKLGLTASDTAQLILEDLFVPEEA-LLGE 232

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGH 99
           L E Q++ QALAR+F +E I+PVA E+D   E PW +++K HE+GL+N  
Sbjct: 4  SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAI 54

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score = 46.6 bits (109), Expect = 9e-07
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query: 254 YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
           + ++EPG GSD   +KT+A+++GD ++LNG KMWI+NGG A W  
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVV 166

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
              MGQRAS T  + FEDV+VP EN  LGE
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVEN-RLGE 226

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 49  ELNETQQEFQALARKFCREEIIPVAAEHDRTG------EYPWGIVKKAHELGLINGHIPA 102
           +L+ +Q E +  A+ F    +   +AE+          +      ++A   GLI   +P 
Sbjct: 4   KLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPI 63

Query: 103 SEQNM 107
                
Sbjct: 64  PLGGT 68

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVL 130
            +  G   +      F +  VP EN+L
Sbjct: 231 PELAGHITTSGPHTRFTEFHVPHENLL 257

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 62  RKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASD 113
                + +   AAE D +GE P  ++ +    GL+   + A    +G  + +
Sbjct: 3   DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRE 54

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGA 135
            +  G RA+    +  + VRVP   VL G GA
Sbjct: 179 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGA 210

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
           L + QQ+F  LA  F  +++ P   E D  G Y   ++ +   L
Sbjct: 4  NLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSL 48

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 72  VAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL 131
           +        +   GI     E G         E  MG   S T  + F+DV+VP EN +L
Sbjct: 171 IVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAEN-ML 229

Query: 132 GE 133
           GE
Sbjct: 230 GE 231

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVANW 296
           LGA+ +TEP AG+D +G +T A K  D  + LNG K++ITNGG A+ 
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADI 169

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
           G GF   +   D  R  +AA AVGL Q  LD A  YA  R+AFG PIA  +G+ 
Sbjct: 1   GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 21/47 (44%), Positives = 25/47 (53%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
          +   D  R  +AA AVGL Q  LD A  YA  R+AFG PIA  +   
Sbjct: 8  LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 138 KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
           ++   T    R  + A A     R +  AT+Y+  R+ FG         +  ++    ++
Sbjct: 3   QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 62

Query: 191 QYVSIFEREIQLMLLGVHNC 210
             +       + +   +   
Sbjct: 63  FPLLASAYAFRFVGEWLKWL 82

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG 37
            T    R  + A A     R +  AT+Y+  R+ FG
Sbjct: 6  YGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFG 42

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 139 IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQY 192
           +   +    R  VA G VG+ + C   A  +A  R+ FG P+  HQ +   I  
Sbjct: 5   LVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIAD 58

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
            +    R  VA G VG+ + C   A  +A  R+ FG P+  HQ+  
Sbjct: 7  AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVA 53

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 26/52 (50%), Positives = 32/52 (61%)

Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
           GFKIAM T D  R  +A+ A+G+AQ  LD A KYA  R AFG P+   Q + 
Sbjct: 2   GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 53

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
          M T D  R  +A+ A+G+AQ  LD A KYA  R AFG P+   Q
Sbjct: 7  MQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQ 50

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
           G  + M   D  R  +A G +GL Q  LD    Y   R+AFG  I   Q M  K+
Sbjct: 2   GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKM 56

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
          M   D  R  +A G +GL Q  LD    Y   R+AFG  I   Q+  
Sbjct: 7  MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ 53

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-PIAAHQGMYLKIQYVS 194
              +    F  +   V A A+G A+   +EA  +A      G   I  HQ +  K+    
Sbjct: 5   AQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCK 64

Query: 195 IFEREIQLM 203
           I     +L+
Sbjct: 65  IRLETSRLL 73

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 12/84 (14%), Positives = 24/84 (28%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
             F  +   V A A+G A+   +EA  +A      G          ++     +     
Sbjct: 10 ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLET 69

Query: 61 ARKFCREEIIPVAAEHDRTGEYPW 84
          +R    + +  +  E         
Sbjct: 70 SRLLVWKAVTTLEDEALEWKVKLE 93

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 99  HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
             P  +     RAS T  I  + V VP+ENVL G  
Sbjct: 200 SAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHE 92
           +L   +   +   R +C+E ++P     +R   +   I+ +  E
Sbjct: 12 EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGE 56

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
           G GF IA+   +  R  +A+ ++G A   +     +   RK FG P+A++Q + 
Sbjct: 1   GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQ 54

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/84 (16%), Positives = 27/84 (32%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
          +   +  R  +A+ ++G A   +     +   RK FG P+A++Q     L +      A 
Sbjct: 8  VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAA 67

Query: 61 ARKFCREEIIPVAAEHDRTGEYPW 84
                  +       D       
Sbjct: 68 RLMVRNAAVALQEERKDAVALCSM 91

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYV 193
           G GFKIAM T D  R  VAA A+G+A+  L +A +Y+ +R  FG P+   Q +  K+  +
Sbjct: 1   GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADM 60

Query: 194 SIFEREIQLMLLGVHNC 210
            +     + ++      
Sbjct: 61  KMQIEAARNLVYKAACK 77

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNE 52
          M T D  R  VAA A+G+A+  L +A +Y+ +R  FG P+   Q    +L +
Sbjct: 8  MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLAD 59

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 36/53 (67%), Positives = 42/53 (79%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
           G GFKIAM T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA  Q +
Sbjct: 1   GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI 53

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 45/58 (77%), Positives = 48/58 (82%)

Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQ 191
           GAGFKIAM TFDKTRPPVAAGAVGLAQR LDEATKYALERK FG  +A HQG+   + 
Sbjct: 1   GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLA 58

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
               G    D   +  ++ R+P+EN+L+   
Sbjct: 227 GPKFGYEEMDNGYLKMDNYRIPRENMLMKYA 257

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 252 GAYCVTEPGAGSDV-------NGVKTKAVKK-GDEWILNGQKMWITNGGVANW 296
               +T+P     +         +  + V+K  D  ++ G K   T    ++ 
Sbjct: 145 VDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE 197

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 15/47 (31%)

Query: 100 IPASEQNMGQRASDTRG---------------ITFEDVRVPKENVLL 131
           +    Q+   R  +                  + F++V +P + + L
Sbjct: 228 MIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFL 274

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 94  GLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
            +  G I     N    + D   + F+ VR+P++ +L+   
Sbjct: 218 NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)

Query: 147 TRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
            R  +   A     +    A +Y+  R+            I   Q    K+
Sbjct: 4   VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 54

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 7  TRPPVAAGAVGLAQRCLDEATKYALERKAFGVP 39
           R  +   A     +    A +Y+  R+   + 
Sbjct: 4  VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIK 36

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%)

Query: 138 KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE 197
                  +  R  +A G +G ++ CL  A +YAL+R  FGVP+A +Q +  K+  +    
Sbjct: 2   GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61

Query: 198 REIQLM 203
                 
Sbjct: 62  TLGLHA 67

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 1  MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
              +  R  +A G +G ++ CL  A +YAL+R  FGVP+A +Q+   +L +   E    
Sbjct: 5  FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLG 64

Query: 61 ARKFCR 66
               +
Sbjct: 65 LHACLQ 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	99.97
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	99.96
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	99.96
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	99.95
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	99.95
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	99.95
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	99.94
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	99.94
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	99.92
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	99.91
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.3
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.09
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	98.88
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	98.86
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	98.85
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	98.84
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	98.84
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	98.75
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	98.74
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	98.73
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	98.71
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	98.58
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	98.57
d1w07a1	189	Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale	98.21
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	97.91
d2ddha1	183	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {	97.82
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	97.72
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	97.7
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	97.61
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	97.59
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	97.59
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	97.49
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	97.44
d1w07a1	189	Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale	97.23
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	97.02
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	96.91
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	96.88
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	96.62
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	96.54
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	96.38
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	96.32
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	96.23
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	96.13
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	96.09
d2ddha1	183	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {	96.07
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	96.05
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	95.67
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	95.37
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	94.16

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=3.3e-30  Score=220.66  Aligned_cols=148  Identities=66%  Similarity=1.023  Sum_probs=129.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|||+||+||++|++.+++|+++++.|.+.++|+++.+|+++|+++.++||+++.+|+                      
T Consensus         1 ~mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~----------------------   58 (231)
T d3mdea2           1 GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPE----------------------   58 (231)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCG----------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccc----------------------
Confidence            4999999999999999999999999999999999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (231)
T d3mdea2          59 --------------------------------------------------------------------------------   58 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh---------------------------hhcccceeeec
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL---------------------------EASGLGAYCVT  257 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~---------------------------~g~~~~~~a~t  257 (312)
                                  +|||.|.+....+.+.|++++.+.+.++..                           .|+.++++++|
T Consensus        59 ------------~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~t  126 (231)
T d3mdea2          59 ------------SFGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVT  126 (231)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECC
T ss_pred             ------------cccCccccccccccchhhhcccccccccccccccccchhhhhcCcccccccccchhcCCceEEEEEec
Confidence                        456666666666666676666665555332                           25667799999


Q ss_pred             CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      ||++|||+.+++|+|++++|||+|||+|+||||+..||+++|.+.++.+
T Consensus       127 Ep~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~~~a~~~~~~a~t~~~  175 (231)
T d3mdea2         127 EPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD  175 (231)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCchhccccceecccccc
Confidence            9999999999999999999999999999999999999999998766544

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.5e-29  Score=216.11  Aligned_cols=147  Identities=46%  Similarity=0.821  Sum_probs=131.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |||.||+||++|++.+++|+++++.|.+.++|+.+.+|+++|+++.++||+++.+|+                       
T Consensus         1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~-----------------------   57 (227)
T d1ukwa2           1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPE-----------------------   57 (227)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCG-----------------------
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhcccc-----------------------
Confidence            899999999999999999999999999999999999999999999999999999998                       


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                                                                                      
T Consensus        58 --------------------------------------------------------------------------------   57 (227)
T d1ukwa2          58 --------------------------------------------------------------------------------   57 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecC
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTE  258 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tE  258 (312)
                                 +|||.|.+..+.+.+.|++++.+.+..++..                           |..++++++||
T Consensus        58 -----------~~GG~g~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE  126 (227)
T d1ukwa2          58 -----------EYGGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSE  126 (227)
T ss_dssp             -----------GGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCB
T ss_pred             -----------ccCcccccccccccchhhhccccccccccccccccchhhhhccCCHHHHHHhccccccccccccccccC
Confidence                       6688888888888888888887766554322                           45567999999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      |++|||+..++|+|++++|||+|||+|.|||++..||+++|.+.++++
T Consensus       127 ~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~Ad~~~v~a~~~~~  174 (227)
T d1ukwa2         127 PGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPE  174 (227)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEESCGG
T ss_pred             CCcCcCCcCceEEEEEECCEEEEEeEEeccCccccchhhccccccCCc
Confidence            999999999999999999999999999999999999999998765543

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=6.6e-29  Score=213.01  Aligned_cols=147  Identities=35%  Similarity=0.523  Sum_probs=132.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|.|+||+||+++++.+|+|+++++.|.+.++|+++.+|+++|++++++||+++.+|+                      
T Consensus         1 ~~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~----------------------   58 (233)
T d2d29a2           1 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPE----------------------   58 (233)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCG----------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccc----------------------
Confidence            3889999999999999999999999999999999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        59 --------------------------------------------------------------------------------   58 (233)
T d2d29a2          59 --------------------------------------------------------------------------------   58 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.+.+..++..+.+++++.+.+.++...                            |..++++++
T Consensus        59 ------------~~GG~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~  126 (233)
T d2d29a2          59 ------------AYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGL  126 (233)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             ------------cccccccchhhhccccccccccccccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEe
Confidence                        6688888888888888888888877664432                            455679999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      |||++|||+.+++|+|++++|+|+|||+|+|||++.+||+++|.+.+.+
T Consensus       127 tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~~~a~~~~v~a~~~~  175 (233)
T d2d29a2         127 TEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDP  175 (233)
T ss_dssp             CBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECSC
T ss_pred             cCCCCCCcccceeEEEEEECCEEEEecceeccccccccccccccccccC
Confidence            9999999999999999999999999999999999999999999865543

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.1e-28  Score=209.60  Aligned_cols=146  Identities=33%  Similarity=0.545  Sum_probs=131.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338         45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV  124 (312)
Q Consensus        45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V  124 (312)
                      .|+++|||||++|++.+++|+++++.|.+.++|+.+.+|.++|++|+++||+++.+|+                      
T Consensus         2 ~~~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~----------------------   59 (231)
T d1jqia2           2 YQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPE----------------------   59 (231)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCG----------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCccccccc----------------------
Confidence            3789999999999999999999999999999999999999999999999999999998                      


Q ss_pred             CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338        125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML  204 (312)
Q Consensus       125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~  204 (312)
                                                                                                      
T Consensus        60 --------------------------------------------------------------------------------   59 (231)
T d1jqia2          60 --------------------------------------------------------------------------------   59 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeee
Q psy10338        205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCV  256 (312)
Q Consensus       205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~  256 (312)
                                  +|||.|++..+...++|++++.+.+.+....                            |..+.++++
T Consensus        60 ------------~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~  127 (231)
T d1jqia2          60 ------------ELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFAL  127 (231)
T ss_dssp             ------------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEEC
T ss_pred             ------------ccCCCchhHHHHHHHHHHHHhhccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCcccccee
Confidence                        6688888888888888888887766554322                            455679999


Q ss_pred             cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |||++|||+..++|+|++++|+|+|||+|.|||++..||+++|.+.++
T Consensus       128 tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~~~~a~~~~v~a~~~  175 (231)
T d1jqia2         128 SEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTD  175 (231)
T ss_dssp             CBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEEEESC
T ss_pred             ccCCCCccCcccceEEEEECCEEEEeeeeeeEeecccccccccccccc
Confidence            999999999999999999999999999999999999999999986544

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=99.95  E-value=9.7e-28  Score=208.79  Aligned_cols=148  Identities=22%  Similarity=0.315  Sum_probs=126.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcC------CCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEE
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTG------EYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITF  119 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~------~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f  119 (312)
                      |||+|+++|+++++.+++|+++++.|...+++...      ..++++|+++.++||+++.+|+                 
T Consensus         1 mdf~lt~eq~~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPe-----------------   63 (259)
T d2c12a2           1 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPI-----------------   63 (259)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBG-----------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCCh-----------------
Confidence            89999999999999999999999999776554432      3478999999999999999997                 


Q ss_pred             cceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHH
Q psy10338        120 EDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFERE  199 (312)
Q Consensus       120 ~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~  199 (312)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (259)
T d2c12a2          64 --------------------------------------------------------------------------------   63 (259)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh-----------------------------hcc
Q psy10338        200 IQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE-----------------------------ASG  250 (312)
Q Consensus       200 ~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~-----------------------------g~~  250 (312)
                                       +|||.|++..+.+.++|+|+++|+++++...                             +..
T Consensus        64 -----------------e~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~i~~~g~~eq~~~~l~~~~~~~g~~  126 (259)
T d2c12a2          64 -----------------PLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEP  126 (259)
T ss_dssp             -----------------GGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHSSCHHHHHHHTGGGGSSCSCC
T ss_pred             -----------------HHhhccchhhhhhhhhhhccccccccccccccccchHHHHHHhhhccccccccccccccceee
Confidence                             7799999999999999999999988764322                             344


Q ss_pred             cceeeecCCCCCCCcC-----CceeEEEEeCCEEEEeeeeeeeeCC-----CcccEEEEEeccCCCC
Q psy10338        251 LGAYCVTEPGAGSDVN-----GVKTKAVKKGDEWILNGQKMWITNG-----GVANWQNRTRDFRYEK  307 (312)
Q Consensus       251 ~~~~a~tEp~~gsd~~-----~~~t~A~~~~~g~~l~G~k~~vs~~-----~~ad~~~v~~~~~~~~  307 (312)
                      ++++++|||++|||+.     +++|+|++++|+|+|||+|+||||+     ..||+++|+++++++.
T Consensus       127 ~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~  193 (259)
T d2c12a2         127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDP  193 (259)
T ss_dssp             CEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCT
T ss_pred             eeeccccCCccccccccccccccccccccccchhccceeeeeecCCcccccccceEEEEEEEecCCC
Confidence            6699999999999974     5889999999999999999999998     4588899996655443

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-27  Score=203.76  Aligned_cols=145  Identities=36%  Similarity=0.538  Sum_probs=131.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         47 YSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      .+.||+||++|++.+++|+++++.|.+.++|+++.+|+++|+++.++||+++.+|+                        
T Consensus         7 ~~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~------------------------   62 (231)
T d1rx0a2           7 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQT------------------------   62 (231)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCG------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccch------------------------
Confidence            35699999999999999999999999999999999999999999999999999997                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (231)
T d1rx0a2          63 --------------------------------------------------------------------------------   62 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEP  259 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp  259 (312)
                                +|||.|.+..+...+.|++++++.+.+.+..                           +....++++|||
T Consensus        63 ----------~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~  132 (231)
T d1rx0a2          63 ----------DVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEP  132 (231)
T ss_dssp             ----------GGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBT
T ss_pred             ----------hhccccccchhhhhhHHHHhhhccccccccccccchhhhhhhhcchhhhhhhcchhhccccccccccccc
Confidence                      6799999999999999999998887765433                           334569999999


Q ss_pred             CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338        260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY  305 (312)
Q Consensus       260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~  305 (312)
                      +.|||+.+++|+|++++|||+|||+|.|||++.+||+++|++++++
T Consensus       133 ~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~  178 (231)
T d1rx0a2         133 GSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGG  178 (231)
T ss_dssp             TBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESSS
T ss_pred             ccCCCCCCceEEEEEECCEEEEEeEEccccCCCcCCEEEEEEeecC
Confidence            9999999999999999999999999999999999999999966543

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.4e-27  Score=201.92  Aligned_cols=142  Identities=35%  Similarity=0.505  Sum_probs=124.8

Q ss_pred             CCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCC--HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338         49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYP--WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK  126 (312)
Q Consensus        49 ~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p--~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~  126 (312)
                      .||+||++|++.+++|+++++.|.+.++|..+.+|  +++|+++.++||+++.+|+                        
T Consensus         7 ~Lseeq~~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~------------------------   62 (236)
T d1ivha2           7 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPV------------------------   62 (236)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCG------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccc------------------------
Confidence            79999999999999999999999999999988887  6899999999999999998                        


Q ss_pred             CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338        127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG  206 (312)
Q Consensus       127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~  206 (312)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (236)
T d1ivha2          63 --------------------------------------------------------------------------------   62 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceeeecC
Q psy10338        207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYCVTE  258 (312)
Q Consensus       207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a~tE  258 (312)
                                ++||.|.+..+.+.+.|++++.|+++++..                            .|+.++++++||
T Consensus        63 ----------~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tE  132 (236)
T d1ivha2          63 ----------QYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSE  132 (236)
T ss_dssp             ----------GGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCB
T ss_pred             ----------cccccCcccchhhhhhhhhhhhhhccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence                      557777777777777777777776655432                            255677999999


Q ss_pred             CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      |++|||+.+++|+|++++|||+|||+|.|||++..||+++|++.++
T Consensus       133 p~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~a~~~~v~a~~~  178 (236)
T d1ivha2         133 PNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTD  178 (236)
T ss_dssp             TTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCSEEEEEEESC
T ss_pred             CCCCCccccCeEEEEEECCEEEEEEEEEEEeCCccccccccccccc
Confidence            9999999999999999999999999999999999999999997654

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-27  Score=201.85  Aligned_cols=149  Identities=26%  Similarity=0.362  Sum_probs=121.0

Q ss_pred             ccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338         43 HQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV  122 (312)
Q Consensus        43 ~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv  122 (312)
                      +..||+.||+||++|++.+|+|+++++.|.+.++|+++.+|+++|+++.++|++++.+|+ .                  
T Consensus         7 ~~~~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~~-~------------------   67 (236)
T d1siqa2           7 PLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKG-Y------------------   67 (236)
T ss_dssp             TTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEE-T------------------
T ss_pred             cccccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhcccccccc-c------------------
Confidence            456899999999999999999999999999999999999999999999999999988864 2                  


Q ss_pred             ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338        123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL  202 (312)
Q Consensus       123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~  202 (312)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (236)
T d1siqa2          68 --------------------------------------------------------------------------------   67 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchH----------------------------HHhhhccccee
Q psy10338        203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIM----------------------------TALEASGLGAY  254 (312)
Q Consensus       203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~----------------------------~~~~g~~~~~~  254 (312)
                                      ||.|.+......+++++++.+.+.+                            .+..|+.++++
T Consensus        68 ----------------gg~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~  131 (236)
T d1siqa2          68 ----------------GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCF  131 (236)
T ss_dssp             ----------------TEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEE
T ss_pred             ----------------ccCCcCHHHHHHHHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecc
Confidence                            3333333444444444444333332                            23347778899


Q ss_pred             eecCCCCCCCcCCceeEE--EEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        255 CVTEPGAGSDVNGVKTKA--VKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       255 a~tEp~~gsd~~~~~t~A--~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      |+|||++|||+..++|++  ++++|+|+|||+|.||||+..||+++|+++++++
T Consensus       132 a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~~vt~a~~Ad~~~V~art~~~  185 (236)
T d1siqa2         132 GLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG  185 (236)
T ss_dssp             ECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCSEEEEEEEETTS
T ss_pred             cCcCCCcccccccccccccccccccceEeccccccEecCCCceEEEEEecccCC
Confidence            999999999999998877  7788999999999999999999999999877654

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=99.92  E-value=3.1e-25  Score=189.66  Aligned_cols=179  Identities=25%  Similarity=0.309  Sum_probs=120.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338         46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP  125 (312)
Q Consensus        46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp  125 (312)
                      |||.||++|+++++.+++|+++++.|.+.++|+++.||+++|++++++|++++.+|+.+.+.+..+.....         
T Consensus         1 Mdf~lt~~~~~l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~---------   71 (232)
T d1buca2           1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLS---------   71 (232)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHH---------
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchh---------
Confidence            89999999999999999999999999999999999999999999999999999999976543322221100         


Q ss_pred             CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338        126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL  205 (312)
Q Consensus       126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~  205 (312)
                                    ....         .........                                    ........
T Consensus        72 --------------~~~~---------~~~~~~~~~------------------------------------~~~~~~~~   92 (232)
T d1buca2          72 --------------YILA---------VEELAKYDA------------------------------------GVAITLSA   92 (232)
T ss_dssp             --------------HHHH---------HHHHHHHCH------------------------------------HHHHHHHH
T ss_pred             --------------eehh---------hhhhhhccc------------------------------------cccccccc
Confidence                          0000         000000000                                    00000000


Q ss_pred             cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcccceeeecCCCCCCCcCCceeEEEEeCC-EEEEeee
Q psy10338        206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQ  284 (312)
Q Consensus       206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~-g~~l~G~  284 (312)
                      ...+ .......+|.-            ++.  ..-++.+..|..++++++|||++|||...++|+|++++| +|+|||+
T Consensus        93 ~~~~-~~~~l~~~~~~------------~~k--~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~  157 (232)
T d1buca2          93 TVSL-CANPIWQFGTE------------AQK--EKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGS  157 (232)
T ss_dssp             HHHH-THHHHHHHCCH------------HHH--HHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEE
T ss_pred             hhhh-hhhHHHHhhhh------------hhh--hhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEE
Confidence            0000 00001111110            000  001223446888999999999999999999999999877 5999999


Q ss_pred             eeeeeCCCcccEEEEEeccCCCC
Q psy10338        285 KMWITNGGVANWQNRTRDFRYEK  307 (312)
Q Consensus       285 k~~vs~~~~ad~~~v~~~~~~~~  307 (312)
                      |+|||++..||+++|.+.+.++.
T Consensus       158 K~~vt~a~~ad~~~v~a~~~~~~  180 (232)
T d1buca2         158 KIFITNGGAADIYIVFAMTDKSK  180 (232)
T ss_dssp             EEEEETTTTCSEEEEEEESCSSS
T ss_pred             EeeecccccceEEEEEEEecCCC
Confidence            99999999999999997655443

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=99.91  E-value=1.9e-24  Score=182.01  Aligned_cols=130  Identities=23%  Similarity=0.340  Sum_probs=115.7

Q ss_pred             HhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHh
Q psy10338         63 KFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMD  142 (312)
Q Consensus        63 ~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~  142 (312)
                      .|+.+++.|.+.++|+++.||+++|+++.++||+++.+|+                                        
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~----------------------------------------   43 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAA----------------------------------------   43 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCG----------------------------------------
T ss_pred             HHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCCh----------------------------------------
Confidence            4667789999999999999999999999999999999998                                        


Q ss_pred             hhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccccccCCCC
Q psy10338        143 TFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLE  222 (312)
Q Consensus       143 ~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g  222 (312)
                                                                                                +|||.|
T Consensus        44 --------------------------------------------------------------------------e~GG~g   49 (210)
T d1r2ja2          44 --------------------------------------------------------------------------EHGGLG   49 (210)
T ss_dssp             --------------------------------------------------------------------------GGTCCC
T ss_pred             --------------------------------------------------------------------------hHcccc
Confidence                                                                                      789999


Q ss_pred             hhHhHHHHHHHHHHccCcchHHHhhhc--------------------------ccceeeecCCCCCCCcCCceeEEEEeC
Q psy10338        223 LSVFDGCLVAEELAYGCTGIMTALEAS--------------------------GLGAYCVTEPGAGSDVNGVKTKAVKKG  276 (312)
Q Consensus       223 ~~~~~~~~v~e~l~~~~~~~~~~~~g~--------------------------~~~~~a~tEp~~gsd~~~~~t~A~~~~  276 (312)
                      ++..+++.++|++++.|.++++++..+                          ...++++|||++|||...++|+|++++
T Consensus        50 ~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~g~~~~~~~te~~~gs~~~~~~t~a~~~~  129 (210)
T d1r2ja2          50 LGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDG  129 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTCC-CEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred             ccHHHHhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccceEEEec
Confidence            999999999999999998877544311                          234899999999999999999999999


Q ss_pred             CEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338        277 DEWILNGQKMWITNGGVANWQNRTRDFRYE  306 (312)
Q Consensus       277 ~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~  306 (312)
                      |+|+|||+|.|||++.+||+++|++.++++
T Consensus       130 ~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~~  159 (210)
T d1r2ja2         130 DTAVVDGHKVWTTAAAYADHLVVFGLQEDG  159 (210)
T ss_dssp             TEEEEEEEEEEETTTTTCSEEEEEEBCSSS
T ss_pred             cceEEEEeecccccccccccccceeeecCC
Confidence            999999999999999999999999765544

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=9.4e-13  Score=113.30  Aligned_cols=63  Identities=29%  Similarity=0.403  Sum_probs=54.8

Q ss_pred             HHhhhcccceeeecCCCCCCCcCCceeEEEEeC--CEEEEee-----eeeeeeC-CCcccEEEEEeccCCC
Q psy10338        244 TALEASGLGAYCVTEPGAGSDVNGVKTKAVKKG--DEWILNG-----QKMWITN-GGVANWQNRTRDFRYE  306 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~--~g~~l~G-----~k~~vs~-~~~ad~~~v~~~~~~~  306 (312)
                      .+..|+.++|+|+|||++|||+.+++|+|++++  ++|+|||     +|+|||| +..||+++|++++.++
T Consensus       126 ~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wit~~~~~a~~~iv~a~~~~~  196 (267)
T d2ddha3         126 PAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQ  196 (267)
T ss_dssp             HHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEET
T ss_pred             HHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeeecCCCCcccCCEEEEeeeccCC
Confidence            355688899999999999999999999999876  6799999     6999999 7899999999765543

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=4.2e-11  Score=102.93  Aligned_cols=61  Identities=30%  Similarity=0.443  Sum_probs=53.6

Q ss_pred             HHhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEee-----eeeeeeC-CCcccEEEEEeccC
Q psy10338        244 TALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNG-----QKMWITN-GGVANWQNRTRDFR  304 (312)
Q Consensus       244 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~G-----~k~~vs~-~~~ad~~~v~~~~~  304 (312)
                      .+..|+.++|+|+|||++|||+.+++|+|+++  +++|+|||     +|+|++| +..||+++|++.+.
T Consensus       124 ~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~  192 (271)
T d1w07a3         124 LANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLI  192 (271)
T ss_dssp             HHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEE
T ss_pred             HHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeeccCCchhhhhhhheeeeec
Confidence            34568889999999999999999999999987  67899999     8999998 67899999986554

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-09  Score=85.08  Aligned_cols=63  Identities=25%  Similarity=0.354  Sum_probs=59.1

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      |+||++++..|+.+|+.+++.++|.++.+++.+++|+++|++||+|+.++|.++++++.....
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~R~~~G~~~~~~~~v~~~la~~~~~   63 (153)
T d1rx0a1           1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATR   63 (153)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhhhHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999997765543

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.8e-09  Score=84.48  Aligned_cols=63  Identities=43%  Similarity=0.623  Sum_probs=58.6

Q ss_pred             ccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHH
Q psy10338        135 AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       135 ~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                      .||.+++..|+.+|+.+++.++|.++++++.+++|+++|.+||+|+.++|.++++++......
T Consensus         1 ~G~~~~~~~L~~~R~~~aa~~~G~~~~al~~a~~ya~~r~~fG~pl~~~~~v~~~la~~~~~~   63 (153)
T d1jqia1           1 MGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALAL   63 (153)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccchhhhhhHHHHHH
Confidence            389999999999999999999999999999999999999999999999999999977665543

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=2e-09  Score=84.20  Aligned_cols=63  Identities=41%  Similarity=0.546  Sum_probs=59.0

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      |+||.+++..|+.+|+.+++.++|.++.+++.+++|+++|.+||+|+.++|.++++++.....
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~a~~~~~~a~~y~~~R~~~g~~l~~~~~v~~~la~~~~~   63 (153)
T d2d29a1           1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATE   63 (153)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHhcchhhhhhHHHHH
Confidence            689999999999999999999999999999999999999999999999999999997665443

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.84  E-value=1.6e-09  Score=84.93  Aligned_cols=64  Identities=70%  Similarity=1.015  Sum_probs=59.4

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHH
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE  197 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~  197 (312)
                      |+||.+++..|+.+|+.+++.++|.++.+++.+++|+++|.+||+|+.++|.+++++.......
T Consensus         1 G~G~~~~~~~l~~~R~~~aa~~~G~~~~a~~~a~~~a~~R~~~g~pl~~~~~v~~~l~~~~~~~   64 (154)
T d3mdea1           1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKV   64 (154)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999999999999999976655543

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.3e-09  Score=85.22  Aligned_cols=61  Identities=33%  Similarity=0.402  Sum_probs=57.6

Q ss_pred             ccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338        135 AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       135 ~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~  195 (312)
                      +||.+++..|+.+|+.+++.++|.++++++.+++|+++|.+||+||.++|.+|+++.....
T Consensus         1 kG~~~~~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~r~~~g~pl~~~~~vq~~la~~~~   61 (151)
T d1ivha1           1 KGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYT   61 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999765554

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.9e-09  Score=82.16  Aligned_cols=56  Identities=32%  Similarity=0.519  Sum_probs=51.6

Q ss_pred             HhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        141 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       141 ~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      ..+||.+|+.+++.++|.++++++.+++|+++|++||+||.++|.++++++.....
T Consensus         5 ~~~Ln~~R~~iaa~~lG~a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~   60 (154)
T d1siqa1           5 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTE   60 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999997655543

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=98.74  E-value=4.3e-09  Score=81.94  Aligned_cols=63  Identities=40%  Similarity=0.619  Sum_probs=59.0

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      |+||.+++..|+.+|+.+++.++|.++++++.+++|+++|.+|++|+.++|.+++++......
T Consensus         1 G~G~~~~~~~l~~~R~~~~~~~~G~~~~~l~~a~~~a~~r~~~g~~l~~~~~v~~~la~~~~~   63 (151)
T d1buca1           1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQ   63 (151)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhhhhhHHhHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999997665543

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=1.2e-08  Score=79.60  Aligned_cols=62  Identities=61%  Similarity=0.903  Sum_probs=58.4

Q ss_pred             CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338        134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~  195 (312)
                      |+||++++..|+.+|+.+++.++|.++.+++.+++|+++|.+||+|+.++|.+|+++.....
T Consensus         1 G~G~~~~~~~L~~eR~~~a~~~~G~~~~~l~~~~~~a~~r~~~g~~l~~~~~v~~~la~~~~   62 (152)
T d1ukwa1           1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLI   62 (152)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999765444

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=98.71  E-value=9.7e-09  Score=88.05  Aligned_cols=58  Identities=14%  Similarity=0.065  Sum_probs=49.0

Q ss_pred             hhcccceeeecCCCCCCCcCC--------ceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338        247 EASGLGAYCVTEPGAGSDVNG--------VKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR  304 (312)
Q Consensus       247 ~g~~~~~~a~tEp~~gsd~~~--------~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~  304 (312)
                      .+....+.++|||+.+++...        ..+.++++++||+|||.|.|+|++..||+++|+..+.
T Consensus       140 ~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad~~~v~~~~~  205 (275)
T d1u8va2         140 ENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIA  205 (275)
T ss_dssp             HHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCSEEEECCSSC
T ss_pred             hCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccceEEEEeccC
Confidence            466788999999999988653        3466788999999999999999999999999995543

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=98.58  E-value=4.4e-08  Score=77.89  Aligned_cols=58  Identities=26%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             HHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCcccchhhHHHHHHhhhH
Q psy10338        139 IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       139 ~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg-~~l~~~q~v~~~l~~~a~~  196 (312)
                      .++..++.+|+.+++.++|++++|++.+++|+++|++|| +||.++|.||++++.....
T Consensus         8 ~~~~~~~~~r~~vaa~alG~a~~al~~a~~ya~~R~~fG~kpl~~~q~vq~~La~~~~~   66 (170)
T d2c12a1           8 LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR   66 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcccchhhhhhcchhhhhh
Confidence            466779999999999999999999999999999999999 6999999999997665553

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=98.57  E-value=2.5e-08  Score=77.91  Aligned_cols=57  Identities=28%  Similarity=0.346  Sum_probs=52.6

Q ss_pred             HHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338        140 AMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF  196 (312)
Q Consensus       140 ~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~  196 (312)
                      ++..|+++|+.+++.++|.++++++.+++|+++|.+||+|+.++|.+|++++.....
T Consensus         6 ~~~~L~~~Rl~ia~~a~G~a~~al~~a~~ya~~R~~fG~pl~~~q~vq~~la~~~~~   62 (153)
T d1r2ja1           6 VAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTA   62 (153)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchhhhhhhhhccc
Confidence            567899999999999999999999999999999999999999999999997765554

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=8.7e-07  Score=71.27  Aligned_cols=54  Identities=20%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             hhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCcccchhhHHHHHHhhh
Q psy10338        142 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       142 ~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg-------~~l~~~q~v~~~l~~~a~  195 (312)
                      ..|..+|+.+++.++|.+++|++.+++|+++|+|||       +||.++|.+|+++.....
T Consensus         7 ~~m~~~R~~ia~~a~g~~~~al~iA~~Ya~~R~qfG~~~~~~~~pI~~~q~vq~~La~~~a   67 (189)
T d1w07a1           7 GTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLA   67 (189)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccCCCccchHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999       799999999999655443

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.8e-07  Score=71.05  Aligned_cols=47  Identities=36%  Similarity=0.670  Sum_probs=43.2

Q ss_pred             CcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCC
Q psy10338          2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYS   48 (312)
Q Consensus         2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~   48 (312)
                      ++||.+|+.++|..+|.+++|++.+.+|+++|+|||.||..+|.+.+
T Consensus         6 ~~Ln~~R~~iaa~~lG~a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~   52 (154)
T d1siqa1           6 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQK   52 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHH
Confidence            46899999999999999999999999999999999999999886443

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=1.4e-05  Score=63.56  Aligned_cols=51  Identities=16%  Similarity=0.085  Sum_probs=45.1

Q ss_pred             hccChhHHHHHHHHHHHHHHHHHHHHHhhccCCC-------CcccchhhHHHHHHhhh
Q psy10338        145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-------PIAAHQGMYLKIQYVSI  195 (312)
Q Consensus       145 ~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~-------~l~~~q~v~~~l~~~a~  195 (312)
                      .+.|+.+++.++|.+.++++.+++|+++|+|||.       ||.++|.+|++|.....
T Consensus         2 ~~~R~~i~~~a~~~l~~A~~iA~~Ya~~R~qfg~~~~~~~~~I~~~q~~q~~L~~~~a   59 (183)
T d2ddha1           2 VFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLA   59 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999994       79999999999755443

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=2.5e-06  Score=65.98  Aligned_cols=46  Identities=46%  Similarity=0.634  Sum_probs=42.5

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccccc
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF   46 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m   46 (312)
                      |++|+.+|+.+++..+|.+++|++.+.+|++.|+|||.|+..+|.+
T Consensus         7 ~~~L~~~R~~~aa~~~G~~~~al~~a~~ya~~r~~fG~pl~~~~~v   52 (153)
T d1jqia1           7 MQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNI   52 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccch
Confidence            4578999999999999999999999999999999999999988754

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=97.70  E-value=1e-06  Score=68.41  Aligned_cols=46  Identities=33%  Similarity=0.530  Sum_probs=42.1

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccccc
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF   46 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m   46 (312)
                      |+.|+.+|+.++++.+|..++|++.+.+|++.|+|||+||..+|.+
T Consensus         7 ~~~L~~~Rl~ia~~a~G~a~~al~~a~~ya~~R~~fG~pl~~~q~v   52 (153)
T d1r2ja1           7 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLV   52 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchh
Confidence            3568899999999999999999999999999999999999987743

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=2.1e-06  Score=66.40  Aligned_cols=47  Identities=45%  Similarity=0.538  Sum_probs=43.0

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccC
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY   47 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~   47 (312)
                      |++|+.+|+.+++..+|.++++++.+.+|++.|++||.||..+|.+.
T Consensus         8 ~~~l~~~R~~~aa~~~G~a~~~~~~a~~y~~~R~~~g~~l~~~~~v~   54 (153)
T d2d29a1           8 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS   54 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHhcchh
Confidence            46789999999999999999999999999999999999999987543

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.9e-06  Score=64.83  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccccc
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF   46 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m   46 (312)
                      |++||.+|+.+++..+|.++++++.+.+|+++|+|||.|+..++.+
T Consensus         8 ~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~R~~~G~~~~~~~~v   53 (153)
T d1rx0a1           8 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYL   53 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhh
Confidence            4678999999999999999999999999999999999999988753

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=97.59  E-value=3.7e-06  Score=66.36  Aligned_cols=47  Identities=28%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             CcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcC-cccccccccCC
Q psy10338          2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQVFYS   48 (312)
Q Consensus         2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~p~~~~~~m~~   48 (312)
                      +.|+.+|+.++|..+|.+++|++.+.+|++.|+||| +||..+|.+..
T Consensus        11 ~~~~~~r~~vaa~alG~a~~al~~a~~ya~~R~~fG~kpl~~~q~vq~   58 (170)
T d2c12a1          11 TAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVAD   58 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcccchhhhhh
Confidence            357889999999999999999999999999999999 69999875443

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.1e-06  Score=64.63  Aligned_cols=47  Identities=36%  Similarity=0.521  Sum_probs=43.1

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccC
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY   47 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~   47 (312)
                      |+.||.+|+.+++..+|.++.+++.+.+|++.|++||.||..+|.+.
T Consensus         7 ~~~l~~~R~~~aa~~~G~~~~al~~a~~~a~~r~~~g~pl~~~~~vq   53 (151)
T d1ivha1           7 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ   53 (151)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHH
Confidence            46789999999999999999999999999999999999999987543

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.44  E-value=3.6e-06  Score=65.05  Aligned_cols=47  Identities=79%  Similarity=1.075  Sum_probs=42.7

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccC
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY   47 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~   47 (312)
                      |++|+.+|+.+++..+|.++++++.+.+|++.|++||.|+..++.+.
T Consensus         8 ~~~l~~~R~~~aa~~~G~~~~a~~~a~~~a~~R~~~g~pl~~~~~v~   54 (154)
T d3mdea1           8 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGIS   54 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhHHH
Confidence            45788999999999999999999999999999999999999876543

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.23  E-value=3e-05  Score=61.92  Aligned_cols=45  Identities=24%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             CcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcC-------ccccccccc
Q psy10338          2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQVF   46 (312)
Q Consensus         2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~p~~~~~~m   46 (312)
                      -+|...|..+++.+.|..++|++.|.+|++.|+|||       +||..+|.+
T Consensus         7 ~~m~~~R~~ia~~a~g~~~~al~iA~~Ya~~R~qfG~~~~~~~~pI~~~q~v   58 (189)
T d1w07a1           7 GTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQ   58 (189)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccCCCccchHHHHHHH
Confidence            478899999999999999999999999999999999       678777643

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=97.02  E-value=2.6e-05  Score=59.73  Aligned_cols=47  Identities=38%  Similarity=0.554  Sum_probs=42.5

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccC
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY   47 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~   47 (312)
                      |+.|+-+|+.+++..+|..+++++.+.+|++.|++||.|+..++.+.
T Consensus         8 ~~~l~~~R~~~~~~~~G~~~~~l~~a~~~a~~r~~~g~~l~~~~~v~   54 (151)
T d1buca1           8 MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSIS   54 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhhhhhHH
Confidence            35688899999999999999999999999999999999999877543

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00014  Score=59.95  Aligned_cols=41  Identities=37%  Similarity=0.484  Sum_probs=34.2

Q ss_pred             CCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCC
Q psy10338         94 GLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG  134 (312)
Q Consensus        94 G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g  134 (312)
                      +..|+.+.+...++|+++.++++|+||||+||++++||..+
T Consensus       195 ~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~~  235 (236)
T d1siqa2         195 GMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS  235 (236)
T ss_dssp             TCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCC
T ss_pred             CCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCCC
Confidence            33455555567899999999999999999999999999754

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=5.1e-05  Score=58.08  Aligned_cols=46  Identities=65%  Similarity=0.948  Sum_probs=41.8

Q ss_pred             CCcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccccc
Q psy10338          1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF   46 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m   46 (312)
                      |.+|+.+|+.+++..+|..+++++.+.+|++.|++||.|+..+|.+
T Consensus         8 ~~~L~~eR~~~a~~~~G~~~~~l~~~~~~a~~r~~~g~~l~~~~~v   53 (152)
T d1ukwa1           8 MQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI   53 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHH
Confidence            3568889999999999999999999999999999999999987643

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=0.00025  Score=58.08  Aligned_cols=32  Identities=50%  Similarity=0.783  Sum_probs=29.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEG  134 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g  134 (312)
                      .++++|+++.++++|.||||+||++++||++|
T Consensus       200 ~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         200 KEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             ccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            57789999999999999999999999999875

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=96.54  E-value=0.00025  Score=57.36  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=29.8

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEG  134 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g  134 (312)
                      .+.++|+++.+++++.|+||+||++++||++|
T Consensus       178 ~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~G  209 (210)
T d1r2ja2         178 VPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG  209 (210)
T ss_dssp             CSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTT
T ss_pred             CCCcccCCCCCeEEEEEeeEEECHHHCcCCCC
Confidence            56789999999999999999999999999886

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00042  Score=56.66  Aligned_cols=31  Identities=35%  Similarity=0.547  Sum_probs=29.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE  133 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~  133 (312)
                      .++++|+++.++++|.|+||+||++++||+|
T Consensus       201 ~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~E  231 (231)
T d1rx0a2         201 KEKKVGWNSQPTRAVIFEDCAVPVANRIGSE  231 (231)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             ccCccccCCCceEEEEEccEEEcHHHEeCCC
Confidence            5778999999999999999999999999975

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=96.32  E-value=0.00038  Score=56.88  Aligned_cols=31  Identities=45%  Similarity=0.678  Sum_probs=29.0

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE  133 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~  133 (312)
                      .++++|+++.++++|.|+||+||++++||+|
T Consensus       202 ~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         202 KEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             ECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             ccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            5689999999999999999999999999985

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0006  Score=55.94  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=29.6

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccCC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEG  134 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g  134 (312)
                      ...++|+++.++++|.|+||+||.+++||+++
T Consensus       205 ~~~~~G~~~~~~~~v~fd~v~Vp~~~llGeen  236 (236)
T d1ivha2         205 KLDKLGMRGSNTCELIFEDCKIPAANILGHEN  236 (236)
T ss_dssp             CCCBSSCTTSCEEEEEEEEEEEEGGGEESCTT
T ss_pred             CcCcccCCCCceEEEEEeeEEEcHHHcCCCCC
Confidence            56788999999999999999999999999875

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.00047  Score=56.14  Aligned_cols=36  Identities=75%  Similarity=1.019  Sum_probs=30.5

Q ss_pred             ccCCCCCCccCCcCCCcccEEEcceecCCCCccccC
Q psy10338         98 GHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGE  133 (312)
Q Consensus        98 ~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~  133 (312)
                      +.+.+..+++|+++.++++|.||||+||++++||.|
T Consensus       196 v~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~E  231 (231)
T d3mdea2         196 VQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGE  231 (231)
T ss_dssp             EEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSCT
T ss_pred             eEEccCcccccCCCCCeEEEEEeeEEEcHHhEecCC
Confidence            333335678999999999999999999999999964

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.00054  Score=55.73  Aligned_cols=31  Identities=55%  Similarity=0.673  Sum_probs=28.8

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE  133 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~  133 (312)
                      .+.++|+++.++++|.|+||+||++++||+|
T Consensus       197 ~~~~~G~r~~~~~~v~f~~v~Vp~~~llGeE  227 (227)
T d1ukwa2         197 IHGKMGQRASGTYELVFEDVKVPVENRLGEE  227 (227)
T ss_dssp             CCCCSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             ccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            5678999999999999999999999999975

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.0019  Score=50.63  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             CCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccc
Q psy10338          6 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI   40 (312)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~   40 (312)
                      ..|+.+++..+|...+|++.|.+|+++|+|||.|.
T Consensus         3 ~~R~~i~~~a~~~l~~A~~iA~~Ya~~R~qfg~~~   37 (183)
T d2ddha1           3 FVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ   37 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence            45889999999999999999999999999999653

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.00077  Score=55.08  Aligned_cols=30  Identities=40%  Similarity=0.570  Sum_probs=28.2

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCcccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLG  132 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~  132 (312)
                      .++++|+++.++++|.|+||+||++++||+
T Consensus       203 ~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         203 KEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             CCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             cccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            577899999999999999999999999996

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.0012  Score=55.21  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCccccC
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE  133 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~  133 (312)
                      ..+++|+++.+++++.||||+||.+++|+.-
T Consensus       226 ~~~~~G~~~~~~~~i~fd~V~VP~~~lL~~~  256 (267)
T d2ddha3         226 IGPKFGYEEMDNGYLKMDNYRIPRENMLMKY  256 (267)
T ss_dssp             CCCCSSCTTCCCEEEEESSEEEEGGGBCCSS
T ss_pred             CCCccccCCCceEEEEEeeEEECHHHhCCCc
Confidence            4578999999999999999999999999753

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.37  E-value=0.0014  Score=54.89  Aligned_cols=30  Identities=27%  Similarity=0.569  Sum_probs=25.9

Q ss_pred             CccC---CcCCCcccEEEcceecCCCCccccCC
Q psy10338        105 QNMG---QRASDTRGITFEDVRVPKENVLLGEG  134 (312)
Q Consensus       105 ~~~g---~~~~~~~~v~f~dv~Vp~~~llG~~g  134 (312)
                      .++|   +++.+++++.||||+||.+++||+.+
T Consensus       226 ~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg~~g  258 (271)
T d1w07a3         226 TKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS  258 (271)
T ss_dssp             CBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSE
T ss_pred             cccCccccCCCceEEEEEeeEEECHHHcCCCCC
Confidence            4555   67889999999999999999999865

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=94.16  E-value=0.0069  Score=50.10  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=27.3

Q ss_pred             CCCccCCcCCCcccEEEcceecCCCCcccc
Q psy10338        103 SEQNMGQRASDTRGITFEDVRVPKENVLLG  132 (312)
Q Consensus       103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~  132 (312)
                      ...++|+++.+++++.|+||+||++++||.
T Consensus       230 ~~~~~G~~~~~~~~v~f~dv~Vp~~~llGt  259 (259)
T d2c12a2         230 EPELAGHITTSGPHTRFTEFHVPHENLLCT  259 (259)
T ss_dssp             CCCBSSCTTCCCCEEEEEEEEEEGGGBCSC
T ss_pred             cccccccccCceEEEEEeeEEECHHHeeCc
Confidence            357889999999999999999999999984