Psyllid ID: psy10342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRKSSSVIP
cccccEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHHHccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccHHcHHHHHHHHHHHccccEEEEEcccccccccEEcccccccEEEEEccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHcccccccc
ccccEEEEEEccccccccccccccccccHHHHHHHHHHHccHHccEEEEccccccHHHHHHHccHHHHHHHHHccHccHHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHcccccEEEEEEEEccccccccccccccccccHcEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEcccccHHHHHHHHHHcccccccc
msnktvsyfynpdvgnfhygakhpmkphrlSVINSLILGYglhkkmqiyrpykasyhdmcrFHSAEYIDflhtvspdkihEHTKFLCqfasgedcpifhglydfcsmytgaSLEGAIQLNNnccdiainwsgglhhakkseasgfcyvNDIVIAILELLKyhprvlyididvhhgdgvqdafylTDRVMTVsfhkygggffpcsgdmyeigaeggryysvnvrnrdlsphsshkrMFRERVHSLLPFVFVVFFSsglgklfrfssKTIFFCANFLAkrksssvip
MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFlakrksssvip
MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPfvfvvffSSGLGKLFRFSSKTIFFCANFLAKRKSSSVIP
*****VSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRN***********MFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLA*********
**NKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPD******KFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRKSSSVIP
MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAK********
**NKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRKSSSVIP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
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MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRKSSSVIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
P56520 428 Histone deacetylase 3 OS= yes N/A 0.856 0.570 0.696 1e-100
Q4SFA0 428 Histone deacetylase 3 OS= N/A N/A 0.863 0.574 0.696 1e-100
Q5RB76 428 Histone deacetylase 3 OS= yes N/A 0.856 0.570 0.700 1e-100
O15379 428 Histone deacetylase 3 OS= yes N/A 0.856 0.570 0.700 1e-100
Q6P6W3 428 Histone deacetylase 3 OS= yes N/A 0.856 0.570 0.700 1e-100
O88895 424 Histone deacetylase 3 OS= yes N/A 0.856 0.575 0.700 1e-100
Q28DV3 428 Histone deacetylase 3 OS= yes N/A 0.856 0.570 0.692 1e-99
Q803C3 428 Histone deacetylase 3 OS= yes N/A 0.863 0.574 0.692 1e-99
Q6IRL9 428 Histone deacetylase 3 OS= N/A N/A 0.856 0.570 0.692 9e-99
P56518 576 Histone deacetylase 1 OS= no N/A 0.828 0.409 0.603 1e-85
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1 Back     alignment and function desciption
 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 204/244 (83%)

Query: 4   KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
           KTV+YFY+PDVGNFHYGA HPMKPHRL++ +SL+L YGL+KKM +++PY+AS HDMCRFH
Sbjct: 3   KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62

Query: 64  SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
           S +YIDFL  VSP+ +   TK L  F  G+DCP+F GL++FCS YTGASL+GA QLNN  
Sbjct: 63  SEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122

Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183
           CDIAINW+GGLHHAKK EASGFCYVNDIVI ILELLKYHPRVLYIDID+HHGDGVQ+AFY
Sbjct: 123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182

Query: 184 LTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHS 243
           LTDRVMTVSFHKYG  FFP +GDMYE+GAE GRYY++NV  RD     S+K +F+  ++ 
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQ 242

Query: 244 LLPF 247
           ++ +
Sbjct: 243 VVDY 246
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1 Back     alignment and function description
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1 Back     alignment and function description
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2 Back     alignment and function description
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1 Back     alignment and function description
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1 Back     alignment and function description
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1 Back     alignment and function description
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1 Back     alignment and function description
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2 Back     alignment and function description
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
242011686 428 histone deacetylase, putative [Pediculus 0.866 0.577 0.769 1e-111
383859224 433 PREDICTED: histone deacetylase 3-like [M 0.859 0.565 0.746 1e-107
340729598 456 PREDICTED: histone deacetylase 3-like [B 0.859 0.537 0.742 1e-106
66514075 433 PREDICTED: histone deacetylase 3 isoform 0.859 0.565 0.742 1e-106
350411261 429 PREDICTED: histone deacetylase 3-like [B 0.859 0.571 0.742 1e-106
307209019 433 Histone deacetylase 3 [Harpegnathos salt 0.859 0.565 0.746 1e-106
380020655 433 PREDICTED: histone deacetylase 3-like [A 0.859 0.565 0.742 1e-106
156537111 434 PREDICTED: histone deacetylase 3-like [N 0.863 0.566 0.731 1e-104
332373028 435 unknown [Dendroctonus ponderosae] 0.866 0.567 0.708 1e-104
193693028 433 PREDICTED: histone deacetylase 3-like [A 0.859 0.565 0.734 1e-104
>gi|242011686|ref|XP_002426578.1| histone deacetylase, putative [Pediculus humanus corporis] gi|212510718|gb|EEB13840.1| histone deacetylase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 214/247 (86%)

Query: 1   MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMC 60
           MS KTVSYFY+PDVGNFHYG  HPMKPHRLSVI+SL+L YGLHKKMQIYRPYKAS HDMC
Sbjct: 1   MSKKTVSYFYSPDVGNFHYGPGHPMKPHRLSVIHSLVLNYGLHKKMQIYRPYKASAHDMC 60

Query: 61  RFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLN 120
           RFHS EY++FL  V+P  +  +TK+L  F  G+DCP+F GLYDFCSMYTGASLEGA +LN
Sbjct: 61  RFHSDEYVEFLQRVTPQNLQNYTKYLAHFNVGDDCPVFEGLYDFCSMYTGASLEGATKLN 120

Query: 121 NNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQD 180
           NNCCDIAINWSGGLHHAKK EASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQ+
Sbjct: 121 NNCCDIAINWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQE 180

Query: 181 AFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRER 240
           AFYLTDRVMTVSFHKYG  FFP +GDMYEIGAE GRYYSVNV  ++    +S+ ++F+  
Sbjct: 181 AFYLTDRVMTVSFHKYGNCFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDTSYVQVFKPV 240

Query: 241 VHSLLPF 247
           +HS++ F
Sbjct: 241 IHSVMEF 247

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383859224|ref|XP_003705096.1| PREDICTED: histone deacetylase 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340729598|ref|XP_003403085.1| PREDICTED: histone deacetylase 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|66514075|ref|XP_395811.2| PREDICTED: histone deacetylase 3 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350411261|ref|XP_003489290.1| PREDICTED: histone deacetylase 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307209019|gb|EFN86219.1| Histone deacetylase 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380020655|ref|XP_003694196.1| PREDICTED: histone deacetylase 3-like [Apis florea] Back     alignment and taxonomy information
>gi|156537111|ref|XP_001602930.1| PREDICTED: histone deacetylase 3-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332373028|gb|AEE61655.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|193693028|ref|XP_001951271.1| PREDICTED: histone deacetylase 3-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
UNIPROTKB|P56520 428 HDAC3 "Histone deacetylase 3" 0.849 0.565 0.702 4.7e-96
UNIPROTKB|F1NH59 428 HDAC3 "Histone deacetylase" [G 0.849 0.565 0.702 7.6e-96
UNIPROTKB|E2R792 428 HDAC3 "Histone deacetylase" [C 0.849 0.565 0.702 1.2e-95
UNIPROTKB|O15379 428 HDAC3 "Histone deacetylase 3" 0.849 0.565 0.702 1.2e-95
UNIPROTKB|F2Z4Z6 428 HDAC3 "Histone deacetylase" [S 0.849 0.565 0.702 1.2e-95
MGI|MGI:1343091 424 Hdac3 "histone deacetylase 3" 0.824 0.554 0.723 2e-95
RGD|619977 428 Hdac3 "histone deacetylase 3" 0.824 0.549 0.723 2e-95
UNIPROTKB|Q6P6W3 428 Hdac3 "Histone deacetylase 3" 0.824 0.549 0.723 2e-95
ZFIN|ZDB-GENE-040426-847 428 hdac3 "histone deacetylase 3" 0.831 0.553 0.714 3.3e-95
FB|FBgn0025825 438 Hdac3 "Histone deacetylase 3" 0.859 0.559 0.690 2.7e-93
UNIPROTKB|P56520 HDAC3 "Histone deacetylase 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 170/242 (70%), Positives = 203/242 (83%)

Query:     4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
             KTV+YFY+PDVGNFHYGA HPMKPHRL++ +SL+L YGL+KKM +++PY+AS HDMCRFH
Sbjct:     3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62

Query:    64 SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
             S +YIDFL  VSP+ +   TK L  F  G+DCP+F GL++FCS YTGASL+GA QLNN  
Sbjct:    63 SEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122

Query:   124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183
             CDIAINW+GGLHHAKK EASGFCYVNDIVI ILELLKYHPRVLYIDID+HHGDGVQ+AFY
Sbjct:   123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182

Query:   184 LTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHS 243
             LTDRVMTVSFHKYG  FFP +GDMYE+GAE GRYY++NV  RD     S+K +F+  ++ 
Sbjct:   183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQ 242

Query:   244 LL 245
             ++
Sbjct:   243 VV 244
GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA
GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA
GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA
GO:0097372 "NAD-dependent histone deacetylase activity (H3-K18 specific)" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0000118 "histone deacetylase complex" evidence=TAS
GO:0016568 "chromatin modification" evidence=TAS
GO:0008134 "transcription factor binding" evidence=TAS
GO:0005634 "nucleus" evidence=TAS
GO:0005737 "cytoplasm" evidence=TAS
GO:0004407 "histone deacetylase activity" evidence=TAS
UNIPROTKB|F1NH59 HDAC3 "Histone deacetylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R792 HDAC3 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O15379 HDAC3 "Histone deacetylase 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4Z6 HDAC3 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1343091 Hdac3 "histone deacetylase 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619977 Hdac3 "histone deacetylase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6W3 Hdac3 "Histone deacetylase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-847 hdac3 "histone deacetylase 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0025825 Hdac3 "Histone deacetylase 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H0W2HDA9_ARATH3, ., 5, ., 1, ., 9, 80.54910.85610.5727yesN/A
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.57870.82100.5075yesN/A
O15379HDAC3_HUMAN3, ., 5, ., 1, ., 9, 80.70080.85610.5700yesN/A
Q28DV3HDAC3_XENTR3, ., 5, ., 1, ., 9, 80.69260.85610.5700yesN/A
Q803C3HDAC3_DANRE3, ., 5, ., 1, ., 9, 80.69230.86310.5747yesN/A
O88895HDAC3_MOUSE3, ., 5, ., 1, ., 9, 80.70080.85610.5754yesN/A
Q6GFX3ACUC_STAARNo assigned EC number0.30700.83850.6143yesN/A
P56520HDAC3_CHICK3, ., 5, ., 1, ., 9, 80.69670.85610.5700yesN/A
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.56140.85260.5612yesN/A
O13298PHD1_SCHPO3, ., 5, ., 1, ., 9, 80.51630.85610.5622yesN/A
Q55BW2HDA12_DICDI3, ., 5, ., 1, ., 9, 80.60560.85960.5805yesN/A
Q5RB76HDAC3_PONAB3, ., 5, ., 1, ., 9, 80.70080.85610.5700yesN/A
Q6P6W3HDAC3_RAT3, ., 5, ., 1, ., 9, 80.70080.85610.5700yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.914
3rd Layer3.5.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 1e-156
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 1e-135
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 1e-115
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-112
PTZ00063 436 PTZ00063, PTZ00063, histone deacetylase; Provision 1e-106
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-103
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 4e-99
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 3e-84
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 5e-74
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 7e-71
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 2e-63
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 6e-56
PTZ00346 429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-47
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-47
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-31
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 2e-29
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 3e-25
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-24
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 2e-23
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 3e-23
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 8e-23
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 3e-22
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-20
cd10007 420 cd10007, HDAC5, Histone deacetylase 5 9e-18
cd10008378 cd10008, HDAC7, Histone deacetylase 7 7e-17
cd10009379 cd10009, HDAC9, Histone deacetylase 9 2e-16
cd10006 409 cd10006, HDAC4, Histone deacetylase 4 4e-16
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 5e-16
cd11683337 cd11683, HDAC10, Histone deacetylase 10 8e-13
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 2e-09
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 4e-08
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  439 bits (1131), Expect = e-156
 Identities = 172/223 (77%), Positives = 194/223 (86%)

Query: 4   KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
           K V+YFY+PDVGNFHYG  HPMKPHRL++ +SL+L YGL+KKMQ+Y+PY+AS HDMCRFH
Sbjct: 1   KRVAYFYDPDVGNFHYGPGHPMKPHRLALTHSLVLHYGLYKKMQVYKPYRASAHDMCRFH 60

Query: 64  SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
           S +YIDFL  V+P  I   TK L QF  G+DCP+F GL+DFCSMYTGASLEGA +LN+  
Sbjct: 61  SEDYIDFLQRVTPQNIQGFTKSLNQFNVGDDCPVFPGLFDFCSMYTGASLEGATKLNHKI 120

Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183
           CDIAINWSGGLHHAKK EASGFCYVNDIVIAILELLKYHPRVLYIDID+HHGDGVQ+AFY
Sbjct: 121 CDIAINWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHPRVLYIDIDIHHGDGVQEAFY 180

Query: 184 LTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRD 226
           LTDRVMTVSFHKYG  FFP +GDMYE+GAE GRYYSVNV  +D
Sbjct: 181 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYSVNVPLKD 223

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
PTZ00063 436 histone deacetylase; Provisional 100.0
PTZ00346 429 histone deacetylase; Provisional 100.0
KOG1342|consensus 425 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343|consensus797 100.0
KOG1344|consensus324 100.0
KOG1343|consensus 797 100.0
KOG0121|consensus153 80.1
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-82  Score=602.01  Aligned_cols=281  Identities=51%  Similarity=0.927  Sum_probs=261.4

Q ss_pred             CCCCcEEEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchh
Q psy10342          1 MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIH   80 (285)
Q Consensus         1 m~~~~v~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~   80 (285)
                      |.+++|+|+|||+++.|.++++|||+|.|+++++++|+++|+.+.+++++|++|+.++|++|||++||++|++.++.+..
T Consensus         1 ~~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~   80 (436)
T PTZ00063          1 SMRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR   80 (436)
T ss_pred             CCCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999987765432


Q ss_pred             hhhhhhcccccC--CCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHH
Q psy10342         81 EHTKFLCQFASG--EDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILEL  158 (285)
Q Consensus        81 ~~~~~~~~~~~~--~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l  158 (285)
                      ++...+..|+++  .|||+++++|++|++++||+|.||+++++|++++|+||+||+|||++++|+|||+||||||||++|
T Consensus        81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L  160 (436)
T PTZ00063         81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL  160 (436)
T ss_pred             cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence            222234456776  599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHH
Q psy10342        159 LKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFR  238 (285)
Q Consensus       159 ~~~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~  238 (285)
                      ++.++||+|||||||||||||+||++||+|+|+|+|++++ |||+||..+++|.|.|+||++|||||+|++|++|+.+|+
T Consensus       161 ~~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~-ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~  239 (436)
T PTZ00063        161 LKYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGD-FFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFK  239 (436)
T ss_pred             HHhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCC-cCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9989999999999999999999999999999999999974 999999999999999999999999999999999999998


Q ss_pred             HH----HhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCC
Q psy10342        239 ER----VHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSV  283 (285)
Q Consensus       239 ~~----l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~  283 (285)
                      ++    ++.|+||+||+|||+      ||| +|+||.+||.++++++++++.|++
T Consensus       240 ~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg-~l~Lt~~g~~~~~~~~~~~~~pil  293 (436)
T PTZ00063        240 PVISKCVEVYRPGAIVLQCGADSLTGDRLG-RFNLTIKGHAACVEFVRSLNIPLL  293 (436)
T ss_pred             HHHHHHHHHhCCCEEEEECCccccCCCCCC-CcccCHHHHHHHHHHHHhcCCCEE
Confidence            65    456799999999999      999 999999999999999999887754

>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG0121|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-101
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 8e-85
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 2e-53
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-53
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 3e-53
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 3e-53
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 3e-53
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 8e-53
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 9e-53
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 1e-52
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-52
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-52
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 3e-52
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 4e-52
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 9e-26
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 1e-25
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 9e-15
2vqq_A 413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 1e-14
2vqo_A 413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 1e-14
2vqj_A 413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 1e-14
2vqw_G 413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 2e-14
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 3e-12
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 2e-09
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 2e-09
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 5e-06
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 3e-05
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/242 (70%), Positives = 201/242 (83%)
Query: 4   KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
           KTV+YFY+PDVGNFHYGA HPMKPHRL++ +SL+L YGL+KKM +++PY+AS HDMCRFH
Sbjct: 3   KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 64  SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
           S +YIDFL  VSP  +   TK L  F  G+DCP+F GL++FCS YTGASL+GA QLNN  
Sbjct: 63  SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122
Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183
           CDIAINW+GGLHHAKK EASGFCYVNDIVI ILELLKYHPRVLYIDID+HHGDGVQ+AFY
Sbjct: 123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182
Query: 184 LTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHS 243
           LTDRVMTVSFHKYG  FFP +GDMYE+GAE GRYY +NV  RD     S+K +F+  ++ 
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQ 242
Query: 244 LL 245
           ++
Sbjct: 243 VV 244
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 1e-120
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 1e-118
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-116
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-113
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 2e-37
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 7e-35
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-34
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 2e-30
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
 Score =  346 bits (890), Expect = e-120
 Identities = 135/221 (61%), Positives = 181/221 (81%), Gaps = 1/221 (0%)

Query: 2   SNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCR 61
           + K V Y+Y+ D+GN++YG  HPMKPHR+ + ++L+L YGL++KM+IYRP+KA+  +M +
Sbjct: 1   AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60

Query: 62  FHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNN 121
           +HS EYI FL ++ PD + E++K + +F  GEDCP+F GL++FC + TG S+ GA++LN 
Sbjct: 61  YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120

Query: 122 NCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDA 181
              D+A+NW+GGLHHAKKSEASGFCYVNDIV+AILELLKYH RVLYIDID+HHGDGV++A
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180

Query: 182 FYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV 222
           FY TDRVMTVSFHKY G +FP +GD+ +IGA  G+YY+VN 
Sbjct: 181 FYTTDRVMTVSFHKY-GEYFPGTGDLRDIGAGKGKYYAVNF 220
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 87.03
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4e-86  Score=619.60  Aligned_cols=280  Identities=64%  Similarity=1.103  Sum_probs=264.7

Q ss_pred             CCcEEEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchhhh
Q psy10342          3 NKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEH   82 (285)
Q Consensus         3 ~~~v~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~~~   82 (285)
                      +++|+|+|||+|+.|.++++|||+|.|+++++++|++.|+++.+++++|++|+.++|++|||++||++|++.++.+..++
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF   81 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999887655444


Q ss_pred             hhhhcccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHHhcC
Q psy10342         83 TKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYH  162 (285)
Q Consensus        83 ~~~~~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~~~  162 (285)
                      .++...++++.|||+++++|++|++++||++.||+++++|++++|++|+||+|||++++++|||+|||+||||++|++.+
T Consensus        82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~  161 (376)
T 4a69_A           82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH  161 (376)
T ss_dssp             HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred             hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHHH--
Q psy10342        163 PRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRER--  240 (285)
Q Consensus       163 ~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~~--  240 (285)
                      +||+|||||||||||||+||++||+|+|+|+|++++.|||+||..+|+|.|.|+|+++|||||+|++|++|+++|+++  
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~  241 (376)
T 4a69_A          162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN  241 (376)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998899999999999999999999999999999999999999864  


Q ss_pred             --HhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCC
Q psy10342        241 --VHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSV  283 (285)
Q Consensus       241 --l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~  283 (285)
                        +++|+||+||+||||      ||| +|+||.+||.+++++|++++.|++
T Consensus       242 p~~~~f~Pd~IvvsaG~Da~~~DpLg-~l~Lt~~g~~~~~~~l~~~~~p~v  291 (376)
T 4a69_A          242 QVVDFYQPTCIVLQCGADSLGCDRLG-CFNLSIRGHGECVEYVKSFNIPLL  291 (376)
T ss_dssp             HHHHHHCCSEEEEECCGGGBTTCSSC-CCBBCHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHhCCCEEEEeCcccCCCCCccc-CeecCHHHHHHHHHHHHHcCCCEE
Confidence              566799999999999      999 999999999999999999887653
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 6e-50
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 4e-46
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 5e-28
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (422), Expect = 6e-50
 Identities = 102/251 (40%), Positives = 147/251 (58%), Gaps = 5/251 (1%)

Query: 8   YFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEY 67
           Y Y+P+  +          P R S+++SLI  Y LHK+M+I +P  AS  +M  FH+  Y
Sbjct: 5   YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 68  IDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIA 127
           +  L  VS +   +H   + ++  G DCP   G++D+ +   GA++  A  L +  C +A
Sbjct: 63  LQHLQKVSQEGDDDHPDSI-EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 128 INWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDR 187
           INWSGG HHAKK EASGFCY+ND V+ IL L +   R+LY+D+D+HHGDGV+DAF  T +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 188 VMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPF 247
           VMTVS HK+  GFFP +GD+ ++G   GRYYSVNV  +D      + ++    +  +   
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 248 V--FVVFFSSG 256
                V    G
Sbjct: 242 FNPKAVVLQLG 252
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-80  Score=576.85  Aligned_cols=273  Identities=38%  Similarity=0.707  Sum_probs=252.1

Q ss_pred             EEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchhhhhhhh
Q psy10342          7 SYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL   86 (285)
Q Consensus         7 ~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~   86 (285)
                      .|||||+|..+  .+.|||+|.|+++++++|+++||++++++++|++|+.+||++|||++||++|++.+....... .+.
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~-~~~   80 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH-PDS   80 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC-TTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc-chh
Confidence            57899999876  578999999999999999999999999999999999999999999999999987653221110 123


Q ss_pred             cccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHHhcCCcEE
Q psy10342         87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVL  166 (285)
Q Consensus        87 ~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~~~~rv~  166 (285)
                      ..++++.|||+++++++++++++|+++.|++.+++|+..+|++|+||+|||++++++|||+|||+||||+++++..+||+
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             eeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEE
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHHH----Hh
Q psy10342        167 YIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRER----VH  242 (285)
Q Consensus       167 IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~~----l~  242 (285)
                      |||||||||||||+||++||+|+|+|+|+++.+|||+||..+|+|.|.|+|+++|||||+|++|++|+.+|+++    ++
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~  240 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ  240 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999865    56


Q ss_pred             ccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCC
Q psy10342        243 SLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSV  283 (285)
Q Consensus       243 ~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~  283 (285)
                      +|+||+||+||||      ||| +|+||++||.+++++|++++.|++
T Consensus       241 ~f~Pd~IvvsaG~D~~~~Dplg-~~~lt~~g~~~~~~~l~~~~~p~~  286 (364)
T d1t64a_         241 AFNPKAVVLQLGADTIAGDPMC-SFNMTPVGIGKCLKYILQWQLATL  286 (364)
T ss_dssp             HHCCSEEEEECCSTTBTTCTTC-CCCBCHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCEEEEECCccCCCCCCCC-CCcCCHHHHHHHHHHHHhcCCCEE
Confidence            7799999999999      999 999999999999999999987754
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure