Psyllid ID: psy10344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSIHQLKISWEIQN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHcEEEEEEEEcc
Coil and Loop (DISEMBL)
MLKKYKKARSELKKRSTDTLRLQkkvgrkgvvgrNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEkhtsdpyslppaseqvmadmkgsdttwllpsptsspgslgsrkssmcsissinssssgsskshhspshnywnrSIHQLKISWEIQN
Flexible Loop (DISEMBL)
mlkkykkarselkkrstdtlrlqkkvgrkgvvgrnadLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSInssssgsskshhspshnywnrsiHQLKISWEIQN
Low Complexity Region (SEG)
MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNerkaileeaekkalraalieeRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGsdttwllpsptsspgslgsrkssmcsissinssssgsskshhspsHNYWNRSIHQLKISWEIQN
Disordered region (IsUnstruct)
*********************************************************KALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMV*****************************************************************************************
Disordered Region (DISOPRED)
*******************************************EVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADM******************************************************************
Disordered Region (DISEMBL)
****************TDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLPS*************************************NYWNRSIHQLKISWEIQN
Disordered Region (DISPRO)
MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWL******************************************WNRSIHQLKISWEIQN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSIHQLKISWEIQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
O43312	755	Metastasis suppressor pro	yes	N/A	0.783	0.196	0.530	2e-39
Q8R1S4	759	Metastasis suppressor pro	yes	N/A	0.788	0.196	0.513	4e-39
Q6P9S0	715	MTSS1-like protein OS=Mus	no	N/A	0.873	0.230	0.536	6e-37
Q765P7	747	MTSS1-like protein OS=Hom	no	N/A	0.666	0.168	0.553	2e-35

>sp|O43312|MTSS1_HUMAN Metastasis suppressor protein 1 OS=Homo sapiens GN=MTSS1 PE=1 SV=2

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 111/149 (74%), Gaps = 1/149 (0%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR E+KK+S+DTL+LQKK  +KG       L  ALQ+VN++  +LEE EK+A+R 
Sbjct: 128 KEYKKARQEIKKKSSDTLKLQKKA-KKGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRK 186

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEER R+C F++ L+PV++EE++ML E++HLQ +   L+  T DP+ LP +SEQV+ D
Sbjct: 187 ALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQVILD 246

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMCS 151
           +KGSD +W   +P SSP +  SRKSS+CS
Sbjct: 247 LKGSDYSWSYQTPPSSPSTTMSRKSSVCS 275

May be related to cancer progression or tumor metastasis in a variety of organ sites, most likely through an interaction with the actin cytoskeleton.
Homo sapiens (taxid: 9606)

>sp|Q8R1S4|MTSS1_MOUSE Metastasis suppressor protein 1 OS=Mus musculus GN=Mtss1 PE=1 SV=1

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 110/152 (72%), Gaps = 3/152 (1%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN---ADLQKALQEVNERKAILEEAEKKA 59
           K+YKKAR E+K +S+DTL+LQKK  +    GR      L  ALQ+VN++  +LEE EK+A
Sbjct: 128 KEYKKARQEIKNKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQA 187

Query: 60  LRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
           +R ALIEER R+C F++ L+PV++EE++ML E++HLQ +   L+  T DP+ LP +SEQV
Sbjct: 188 VRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQV 247

Query: 120 MADMKGSDTTWLLPSPTSSPGSLGSRKSSMCS 151
           + D+KGSD +W   +P SSP +  SRKSS+CS
Sbjct: 248 ILDLKGSDYSWSYQTPPSSPSTTMSRKSSVCS 279

Inhibits the nucleation of actin filaments in vitro.

Mus musculus (taxid: 10090)

>sp|Q6P9S0|MTSSL_MOUSE MTSS1-like protein OS=Mus musculus GN=Mtss1l PE=1 SV=1

 Score =  153 bits (387), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 119/166 (71%), Gaps = 1/166 (0%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN+   +LEE EK+A+R 
Sbjct: 127 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRR 185

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEER R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T+DP+ LPPASEQV+ D
Sbjct: 186 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTADPHKLPPASEQVIKD 245

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHS 168
           +KGSD +W   +P SSP S  SRKSSMCS++   ++   S  SH S
Sbjct: 246 LKGSDYSWSYQTPPSSPSSSNSRKSSMCSLAQPATTRLSSVSSHDS 291

May function in actin bundling.

Mus musculus (taxid: 10090)

>sp|Q765P7|MTSSL_HUMAN MTSS1-like protein OS=Homo sapiens GN=MTSS1L PE=1 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 102/132 (77%), Gaps = 6/132 (4%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQK----ALQEVNERKAILEEAEKK 58
           K+YK+AR E+KK+S+DTL+LQKK  RK ++G+  DLQ     ALQ+VN+   +LEE EK+
Sbjct: 127 KEYKRARHEIKKKSSDTLKLQKKA-RKELLGK-GDLQPQLDSALQDVNDMYLLLEETEKQ 184

Query: 59  ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
           A+R ALIEER R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQ
Sbjct: 185 AVRRALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQ 244

Query: 119 VMADMKGSDTTW 130
           V+ D+KGSD +W
Sbjct: 245 VIKDLKGSDYSW 256

May function in actin bundling.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
328704461	755	PREDICTED: hypothetical protein LOC10057	0.910	0.227	0.707	3e-55
328704463	725	PREDICTED: hypothetical protein LOC10057	0.910	0.237	0.707	4e-55
270009701	906	hypothetical protein TcasGA2_TC008993 [T	0.920	0.192	0.703	2e-51
189239349	890	PREDICTED: similar to CDNA sequence BC06	0.920	0.195	0.703	2e-51
242015734	673	conserved hypothetical protein [Pediculu	0.920	0.258	0.664	9e-47
432881864	785	PREDICTED: metastasis suppressor protein	0.920	0.221	0.553	5e-41
432908306	815	PREDICTED: metastasis suppressor protein	0.809	0.187	0.561	8e-41
348512444	816	PREDICTED: metastasis suppressor protein	0.809	0.187	0.548	1e-40
340716813	858	PREDICTED: hypothetical protein LOC10064	0.947	0.208	0.566	5e-40
350402869	859	PREDICTED: hypothetical protein LOC10074	0.947	0.208	0.566	6e-40

>gi|328704461|ref|XP_003242497.1| PREDICTED: hypothetical protein LOC100575191 isoform 1 [Acyrthosiphon pisum]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 150/178 (84%), Gaps = 6/178 (3%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR+ELKKRSTDTLRLQKK  RKG   +  +L KALQ+V++RKA+LEE EK+A+R 
Sbjct: 129 KEYKKARAELKKRSTDTLRLQKK-ARKG--AKMNELHKALQDVSDRKAVLEETEKRAVRE 185

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEERSRYC+FVT LKPV++EEVAML ELSHLQEVM +LE HT++PYSLPPASEQV+ D
Sbjct: 186 ALIEERSRYCIFVTILKPVLEEEVAMLMELSHLQEVMDKLEAHTTEPYSLPPASEQVLVD 245

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSIHQ 180
            KGS+ +W   +P SSP SLGSRKSSMCSI+SINS SSGS+   HSPSH YW+RS+ Q
Sbjct: 246 YKGSEMSWTHQTPPSSPSSLGSRKSSMCSINSINSWSSGST---HSPSHQYWSRSLLQ 300

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704463|ref|XP_003242498.1| PREDICTED: hypothetical protein LOC100575191 isoform 2 [Acyrthosiphon pisum]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 150/178 (84%), Gaps = 6/178 (3%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR+ELKKRSTDTLRLQKK  RKG   +  +L KALQ+V++RKA+LEE EK+A+R 
Sbjct: 129 KEYKKARAELKKRSTDTLRLQKK-ARKG--AKMNELHKALQDVSDRKAVLEETEKRAVRE 185

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEERSRYC+FVT LKPV++EEVAML ELSHLQEVM +LE HT++PYSLPPASEQV+ D
Sbjct: 186 ALIEERSRYCIFVTILKPVLEEEVAMLMELSHLQEVMDKLEAHTTEPYSLPPASEQVLVD 245

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSIHQ 180
            KGS+ +W   +P SSP SLGSRKSSMCSI+SINS SSGS+   HSPSH YW+RS+ Q
Sbjct: 246 YKGSEMSWTHQTPPSSPSSLGSRKSSMCSINSINSWSSGST---HSPSHQYWSRSLLQ 300

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009701|gb|EFA06149.1| hypothetical protein TcasGA2_TC008993 [Tribolium castaneum]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/182 (70%), Positives = 150/182 (82%), Gaps = 8/182 (4%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQK----ALQEVNERKAILEEAEKK 58
           K YK+AR++LKKRSTDTLRLQKK+ RKG  G   DLQK     LQ+V ER+ +LEE EK 
Sbjct: 108 KDYKRARADLKKRSTDTLRLQKKM-RKGAGG---DLQKRLECGLQDVTERRQLLEETEKH 163

Query: 59  ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
           A+RAALIEERSR+C FV  LKPVVDEEVAML+E+SHLQE + QLEKHT+DP +LPPASEQ
Sbjct: 164 AVRAALIEERSRFCTFVGLLKPVVDEEVAMLTEMSHLQEAVQQLEKHTADPSTLPPASEQ 223

Query: 119 VMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSI 178
           V+AD+K SD+ W   +P SSP SLGSRKSSMCSISS+NSSSSGSSK+HHSPSH +W RS+
Sbjct: 224 VIADLKSSDSGWSFQTPPSSPSSLGSRKSSMCSISSLNSSSSGSSKNHHSPSHPHWQRSL 283

Query: 179 HQ 180
            Q
Sbjct: 284 SQ 285

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239349|ref|XP_973999.2| PREDICTED: similar to CDNA sequence BC060632 [Tribolium castaneum]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/182 (70%), Positives = 150/182 (82%), Gaps = 8/182 (4%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQK----ALQEVNERKAILEEAEKK 58
           K YK+AR++LKKRSTDTLRLQKK+ RKG  G   DLQK     LQ+V ER+ +LEE EK 
Sbjct: 129 KDYKRARADLKKRSTDTLRLQKKM-RKGAGG---DLQKRLECGLQDVTERRQLLEETEKH 184

Query: 59  ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
           A+RAALIEERSR+C FV  LKPVVDEEVAML+E+SHLQE + QLEKHT+DP +LPPASEQ
Sbjct: 185 AVRAALIEERSRFCTFVGLLKPVVDEEVAMLTEMSHLQEAVQQLEKHTADPSTLPPASEQ 244

Query: 119 VMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSI 178
           V+AD+K SD+ W   +P SSP SLGSRKSSMCSISS+NSSSSGSSK+HHSPSH +W RS+
Sbjct: 245 VIADLKSSDSGWSFQTPPSSPSSLGSRKSSMCSISSLNSSSSGSSKNHHSPSHPHWQRSL 304

Query: 179 HQ 180
            Q
Sbjct: 305 SQ 306

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015734|ref|XP_002428502.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513136|gb|EEB15764.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 146/182 (80%), Gaps = 8/182 (4%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQK----ALQEVNERKAILEEAEKK 58
           K+YKKAR+ELKKRSTDTLRLQKK  + G      +LQ+    +LQ+V E+K ILEE EKK
Sbjct: 68  KEYKKARTELKKRSTDTLRLQKKAKKGGKC---GELQRRVETSLQDVTEKKHILEETEKK 124

Query: 59  ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
           ALR+ LIEERSR+CVFV F +PVV EE+AMLSEL+H+QE+  QL+K ++DP+ LPPASEQ
Sbjct: 125 ALRSVLIEERSRFCVFVGFFRPVVREEIAMLSELTHIQEMSEQLDKISADPHILPPASEQ 184

Query: 119 VMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSI 178
           V+ D+KGSD  W   +P SSP SLGSRKSSMCSISS+NSSSSGSSK H+SP+H YW RSI
Sbjct: 185 VIQDLKGSDCFWSFQTPPSSPSSLGSRKSSMCSISSLNSSSSGSSKCHNSPNH-YWQRSI 243

Query: 179 HQ 180
            Q
Sbjct: 244 SQ 245

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432881864|ref|XP_004073939.1| PREDICTED: metastasis suppressor protein 1-like [Oryzias latipes]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 133/177 (75%), Gaps = 3/177 (1%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR E+KKRS+DTL+LQKK  +KG       L  A+Q+V++R  +LEE EK+A+R 
Sbjct: 128 KEYKKARQEIKKRSSDTLKLQKKA-KKGRGDLQPQLDSAMQDVSDRYLLLEETEKQAVRK 186

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           AL+EERSR+C FV+ L+PVVDEE++ML E++HLQ +   L+  T DP+ LPP+SEQV+ D
Sbjct: 187 ALVEERSRFCCFVSMLRPVVDEEMSMLGEITHLQTLTDDLKALTMDPHKLPPSSEQVIVD 246

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMC-SISSINSSSSGSSKSH-HSPSHNYWNRS 177
           MKGS+ TW   +P SSP +  SRKSSMC S++S+NSS S SS SH HSP+ ++  R+
Sbjct: 247 MKGSECTWSYQTPPSSPSTTVSRKSSMCSSLNSVNSSDSRSSGSHCHSPTSHFRYRA 303

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432908306|ref|XP_004077802.1| PREDICTED: metastasis suppressor protein 1-like [Oryzias latipes]

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 114/155 (73%), Gaps = 2/155 (1%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR E+KK+S+DTL+LQKK  +KG       L  A+Q+V+++  +LEE EK+ALR 
Sbjct: 128 KEYKKARQEIKKKSSDTLKLQKKA-KKGRGDIQPQLNSAMQDVSDKYILLEETEKQALRK 186

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEER R+C FV  L+PVVDEE +ML EL+HLQ +   L+  TSDP+ LPPA EQV+ D
Sbjct: 187 ALIEERQRFCCFVAMLRPVVDEETSMLGELTHLQTISEDLKALTSDPHKLPPACEQVITD 246

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMC-SISSIN 156
           +K SD  WL  +P SSP +  SRKSSMC S++S+N
Sbjct: 247 LKASDYGWLCHTPPSSPSTTMSRKSSMCSSLNSVN 281

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348512444|ref|XP_003443753.1| PREDICTED: metastasis suppressor protein 1 [Oreochromis niloticus]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 116/155 (74%), Gaps = 2/155 (1%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YK+AR E+KK+S+DTL+LQKK  +KG       L  A+Q+V+++  +LEE EK+ALR 
Sbjct: 128 KEYKRARQEIKKKSSDTLKLQKKA-KKGRGDIQPQLDSAMQDVSDKYILLEETEKQALRK 186

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
           ALIEER R+C FV  L+P+VDEE++ML E++HLQ +   L+  TSDP+ LPPASEQV+ D
Sbjct: 187 ALIEERQRFCCFVAMLRPIVDEEISMLGEVTHLQTISEDLKALTSDPHKLPPASEQVILD 246

Query: 123 MKGSDTTWLLPSPTSSPGSLGSRKSSMC-SISSIN 156
           +KGSD  W   +P SSP +  SRKSSMC S++S+N
Sbjct: 247 LKGSDYGWSYQTPPSSPSTTMSRKSSMCSSLNSVN 281

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340716813|ref|XP_003396887.1| PREDICTED: hypothetical protein LOC100644258 isoform 2 [Bombus terrestris]

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 142/196 (72%), Gaps = 17/196 (8%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKG-----------VVGRNADLQKALQE----VNE 47
           K+YKKA++EL+KRSTDTLRLQKK  RKG            +  + +L + L+     V E
Sbjct: 128 KEYKKAKAELRKRSTDTLRLQKKKARKGHHLQGQSQGHGTLSGDIELNRMLESSAAVVQE 187

Query: 48  RKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTS 107
           ++  LEE E+KA+RAAL+EER RYC+   FLKPV+DEE+AML EL+HLQEV  QL++H +
Sbjct: 188 KRLSLEETERKAVRAALLEERGRYCLLARFLKPVLDEEIAMLMELTHLQEVSDQLQRHAA 247

Query: 108 DPYSLPPASEQVMADMKGSDTT-WLLPS-PTSSPGSLGSRKSSMCSISSINSSSSGSSKS 165
            P+ LPPASEQV+ D+KG D T W L + P+S   SLGSRKSSMCSISS+ SSSSGS KS
Sbjct: 248 SPHHLPPASEQVITDIKGCDVTQWSLATPPSSPSLSLGSRKSSMCSISSLTSSSSGSCKS 307

Query: 166 HHSPSHNYWNRSIHQL 181
           H SPS + W+RS+ Q+
Sbjct: 308 HPSPSGHPWHRSLSQV 323

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402869|ref|XP_003486631.1| PREDICTED: hypothetical protein LOC100748204 isoform 2 [Bombus impatiens]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 142/196 (72%), Gaps = 17/196 (8%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKG-----------VVGRNADLQKALQE----VNE 47
           K+YKKA++EL+KRSTDTLRLQKK  RKG            +  + +L + L+     V E
Sbjct: 128 KEYKKAKAELRKRSTDTLRLQKKKARKGHHLQGQTQGHGTLSGDIELNRMLESSAAVVQE 187

Query: 48  RKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTS 107
           ++  LEE E+KA+RAAL+EER RYC+   FLKPV+DEE+AML EL+HLQEV  QL++H +
Sbjct: 188 KRLSLEETERKAVRAALLEERGRYCLLARFLKPVLDEEIAMLMELTHLQEVSDQLQRHAA 247

Query: 108 DPYSLPPASEQVMADMKGSDTT-WLLPS-PTSSPGSLGSRKSSMCSISSINSSSSGSSKS 165
            P+ LPPASEQV+ D+KG D T W L + P+S   SLGSRKSSMCSISS+ SSSSGS KS
Sbjct: 248 SPHHLPPASEQVITDIKGCDVTQWSLATPPSSPSLSLGSRKSSMCSISSLTSSSSGSCKS 307

Query: 166 HHSPSHNYWNRSIHQL 181
           H SPS + W+RS+ Q+
Sbjct: 308 HPSPSGHPWHRSLSQV 323

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
ZFIN|ZDB-GENE-081105-141	702	si:dkey-46l15.1 "si:dkey-46l15	0.645	0.173	0.487	1.3e-24
UNIPROTKB|E1C750	203	Gga.19907 "Uncharacterized pro	0.645	0.600	0.455	1.8e-23
UNIPROTKB|I3L2G4	173	MTSS1L "MTSS1-like protein" [H	0.645	0.705	0.455	1.8e-23
MGI|MGI:3039591	715	Mtss1l "metastasis suppressor	0.645	0.170	0.463	7e-23
UNIPROTKB|F1MGT3	709	MTSS1L "Uncharacterized protei	0.645	0.172	0.455	1.4e-22
RGD|1309731	715	Mtss1l "metastasis suppressor	0.645	0.170	0.455	1.9e-22
UNIPROTKB|J9NU97	685	MTSS1L "Uncharacterized protei	0.640	0.176	0.456	2.8e-22
UNIPROTKB|F6Y6H8	696	MTSS1 "Uncharacterized protein	0.650	0.176	0.420	2.9e-22
UNIPROTKB|J9NVN4	717	MTSS1L "Uncharacterized protei	0.640	0.168	0.456	3.1e-22
UNIPROTKB|Q765P7	747	MTSS1L "MTSS1-like protein" [H	0.640	0.161	0.456	3.4e-22

ZFIN|ZDB-GENE-081105-141 si:dkey-46l15.1 "si:dkey-46l15.1" [Danio rerio (taxid:7955)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 60/123 (48%), Positives = 80/123 (65%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YKKARSE+KK+S+DT++LQKKV +KG       L  ALQ+VN                
Sbjct:   128 KEYKKARSEIKKKSSDTIKLQKKV-KKGKDEVRMQLDSALQDVNTRYAVLEETEKRAVCR 186

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C FVT LKPV+DEE++ML E++HLQ ++  L   T+DP +LPPASEQV+ D
Sbjct:   187 ALIEERGRFCSFVTMLKPVLDEEISMLGEVTHLQTILEDLGNLTADPNTLPPASEQVILD 246

Query:   123 MKG 125
             +KG
Sbjct:   247 LKG 249

GO:0046847 "filopodium assembly" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1C750 Gga.19907 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 56/123 (45%), Positives = 77/123 (62%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN                
Sbjct:    67 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDNALQDVNDMYLLLEETEKQAVRK 125

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQV+ D
Sbjct:   126 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQVIKD 185

Query:   123 MKG 125
             +KG
Sbjct:   186 LKG 188

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

UNIPROTKB|I3L2G4 MTSS1L "MTSS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 56/123 (45%), Positives = 77/123 (62%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN                
Sbjct:    49 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRR 107

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQV+ D
Sbjct:   108 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQVIKD 167

Query:   123 MKG 125
             +KG
Sbjct:   168 LKG 170

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

MGI|MGI:3039591 Mtss1l "metastasis suppressor 1-like" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 7.0e-23, P = 7.0e-23
 Identities = 57/123 (46%), Positives = 77/123 (62%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN                
Sbjct:   127 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRR 185

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T+DP+ LPPASEQV+ D
Sbjct:   186 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTADPHKLPPASEQVIKD 245

Query:   123 MKG 125
             +KG
Sbjct:   246 LKG 248

GO:0003779 "actin binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

UNIPROTKB|F1MGT3 MTSS1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 56/123 (45%), Positives = 77/123 (62%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN                
Sbjct:   108 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRR 166

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQV+ D
Sbjct:   167 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQVITD 226

Query:   123 MKG 125
             +KG
Sbjct:   227 LKG 229

GO:0046847 "filopodium assembly" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

RGD|1309731 Mtss1l "metastasis suppressor 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 56/123 (45%), Positives = 77/123 (62%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNXXXXXXXXXXXXXXXX 62
             K+YK+AR E+KK+S+DTL+LQKK  RKG       L  ALQ+VN                
Sbjct:   127 KEYKRARHEIKKKSSDTLKLQKKA-RKGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRR 185

Query:    63 XXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD 122
                  R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQV+ D
Sbjct:   186 ALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQVIKD 245

Query:   123 MKG 125
             +KG
Sbjct:   246 LKG 248

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

UNIPROTKB|J9NU97 MTSS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 58/127 (45%), Positives = 82/127 (64%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQ----KALQEVNXXXXXXXXXXXX 58
             K+YK+AR E+KK+S+DTL+LQKK  RK ++G+  DLQ     ALQ+VN            
Sbjct:    73 KEYKRARHEIKKKSSDTLKLQKKA-RKELLGKG-DLQPQLDSALQDVNDMYLLLEETEKQ 130

Query:    59 XXXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
                      R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQ
Sbjct:   131 AVRRALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQ 190

Query:   119 VMADMKG 125
             V+ D+KG
Sbjct:   191 VIKDLKG 197

GO:0046847 "filopodium assembly" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F6Y6H8 MTSS1 "Uncharacterized protein" [Equus caballus (taxid:9796)]

 Score = 268 (99.4 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 53/126 (42%), Positives = 77/126 (61%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN---ADLQKALQEVNXXXXXXXXXXXXX 59
             K+YKKAR E+KK+S+DTL+LQKK  +   +GR      L  ALQ+VN             
Sbjct:    65 KEYKKARQEIKKKSSDTLKLQKKAKKVDALGRGDIQPQLDSALQDVNDKYLLLEETEKQA 124

Query:    60 XXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
                     R R+C F++ L+PV++EE++ML E++HLQ +   L+  T DP+ LP +SEQV
Sbjct:   125 VRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQV 184

Query:   120 MADMKG 125
             + D+KG
Sbjct:   185 ILDLKG 190

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISS

GO:0061333 "renal tubule morphogenesis" evidence=ISS

GO:0071498 "cellular response to fluid shear stress" evidence=ISS

GO:0072102 "glomerulus morphogenesis" evidence=ISS

GO:0072160 "nephron tubule epithelial cell differentiation" evidence=ISS

GO:2001013 "epithelial cell proliferation involved in renal tubule morphogenesis" evidence=ISS

UNIPROTKB|J9NVN4 MTSS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 58/127 (45%), Positives = 82/127 (64%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQ----KALQEVNXXXXXXXXXXXX 58
             K+YK+AR E+KK+S+DTL+LQKK  RK ++G+  DLQ     ALQ+VN            
Sbjct:   105 KEYKRARHEIKKKSSDTLKLQKKA-RKELLGKG-DLQPQLDSALQDVNDMYLLLEETEKQ 162

Query:    59 XXXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
                      R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQ
Sbjct:   163 AVRRALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQ 222

Query:   119 VMADMKG 125
             V+ D+KG
Sbjct:   223 VIKDLKG 229

GO:0046847 "filopodium assembly" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q765P7 MTSS1L "MTSS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 58/127 (45%), Positives = 82/127 (64%)

Query:     3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQ----KALQEVNXXXXXXXXXXXX 58
             K+YK+AR E+KK+S+DTL+LQKK  RK ++G+  DLQ     ALQ+VN            
Sbjct:   127 KEYKRARHEIKKKSSDTLKLQKKA-RKELLGKG-DLQPQLDSALQDVNDMYLLLEETEKQ 184

Query:    59 XXXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQ 118
                      R R+C F+TFL+PVV+ E+ ML E++HLQ ++  L   T++P+ LPPASEQ
Sbjct:   185 AVRRALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQ 244

Query:   119 VMADMKG 125
             V+ D+KG
Sbjct:   245 VIKDLKG 251

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R1S4	MTSS1_MOUSE	No assigned EC number	0.5131	0.7883	0.1963	yes	N/A
O43312	MTSS1_HUMAN	No assigned EC number	0.5302	0.7830	0.1960	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
cd07643	231	cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also know	3e-48
pfam08397	218	pfam08397, IMD, IRSp53/MIM homology domain	1e-22
cd07605	223	cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as	2e-14
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	0.002

>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

 Score =  156 bits (396), Expect = 3e-48
 Identities = 64/111 (57%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
           K+YKKAR E+KK+S+DT+RLQKK  RKG       L  A+Q+VN++  +LEE EKKA+R 
Sbjct: 122 KEYKKARQEIKKKSSDTIRLQKKA-RKGKGDLQPQLDSAMQDVNDKYLLLEETEKKAVRN 180

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLP 113
           ALIEER R+C FV+FLKPV+DEE++ML E++HLQ +M  L   T+DP+ LP
Sbjct: 181 ALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLASLTADPHKLP 231

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulates actin and plasma membrane dynamics to promote the extension of radial glia, which is important in neuronal migration, axon guidance and neurogenesis. The IMD domain of MIM binds and bundles actin filaments, binds membranes, and interacts with the small GTPase Rac. Length = 231

>gnl|CDD|149453 pfam08397, IMD, IRSp53/MIM homology domain

 Score = 90.2 bits (224), Expect = 1e-22
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
            +YKK R EL+K+ +D  +LQ+K  +KG       L++AL++VN+++  LEE EK+ +R 
Sbjct: 109 TEYKKKRDELEKKQSDLKKLQRKS-QKGKNDSKYQLKEALEDVNDKQLELEEFEKQGVRE 167

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDP 109
           AL+EE+ R+C  V    PV +EE+A   E ++ LQ  +   ++ TSD 
Sbjct: 168 ALLEEKRRFCFLVDKHCPVSNEELAFHGEAITLLQTKLPDWQELTSDA 215

The N-terminal predicted helical stretch of the insulin receptor tyrosine kinase substrate p53 (IRSp53) is an evolutionary conserved F-actin bundling domain involved in filopodium formation. The domain has been named IMD after the IRSp53 and missing in metastasis (MIM) proteins in which it occurs. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 and is SH3-independent. Length = 218

>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 2   LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
            K+YK+ R +L K  ++  +LQKK  + G       L +AL+E+N+++  LE    + LR
Sbjct: 118 KKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLR 177

Query: 62  AALIEERSRYCVFVTFLKPVVDEEVAM-LSELSHLQE 97
            AL+EER RYC  V     V   E+A     ++ L  
Sbjct: 178 DALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some members contain additional domains and motifs. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac. Length = 223

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 17/74 (22%)

Query: 3  KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAIL---------E 53
          KK KKA+ E +K        Q+K  RKG    + +L++A +E    KA            
Sbjct: 15 KKAKKAKKEKRK--------QRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQA 66

Query: 54 EAEKKALRAALIEE 67
          EAE+KA+ A + + 
Sbjct: 67 EAEQKAIVAQIKQL 80

This domain, found in various prokaryotic proteins, has no known function. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	100.0
cd07646	232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	99.98
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	99.97
cd07645	226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	99.97
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	99.96
cd07644	215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	99.88
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	95.88
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	95.44
smart00721	239	BAR BAR domain.	94.32
KOG3771|consensus	460		91.25
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	88.93
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	88.39
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	88.16
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	86.94
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	84.28
cd07611	211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	82.65
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	81.99
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	81.14
cd07674	261	F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A	80.89

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=100.00  E-value=1.2e-37  Score=267.05  Aligned_cols=111  Identities=58%  Similarity=0.902  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV   81 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV   81 (189)
                      ||+|||+|+|+|++++|++|+|||+ |||.++.++++|++++||++|+.+||++++++||+||||||+||||||++++||
T Consensus       121 ~k~~kk~R~elKk~~~dt~klqkk~-rKg~~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pV  199 (231)
T cd07643         121 AKEYKKARQEIKKKSSDTIRLQKKA-RKGKGDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPV  199 (231)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH-hccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7999999999999999999999999 667799999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhchhHHHHHHHHHHHHhCCCCCCc
Q psy10344         82 VDEEVAMLSELSHLQEVMVQLEKHTSDPYSLP  113 (189)
Q Consensus        82 v~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP  113 (189)
                      +++||+|++|++|||++++++..+|.||++||
T Consensus       200 l~~e~~ml~E~~hl~~~~~~l~~~t~~p~~lp  231 (231)
T cd07643         200 LDEEISMLGEVTHLQTIMEDLASLTADPHKLP  231 (231)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCcccCc
Confidence            99999999999999999999999999999999

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53

Probab=99.98  E-value=1e-32  Score=236.88  Aligned_cols=112  Identities=23%  Similarity=0.347  Sum_probs=105.3

Q ss_pred             ChhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344          1 MLKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADL-----QKALQEVNERKAILEEAEKKALRAALIEERSRYC   72 (189)
Q Consensus         1 ~ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l-----~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC   72 (189)
                      |.+++|+|++|||.|+++++|+|   ||+|||++|.+++++     .++++++++||.+||+|+++|||+||+|||||||
T Consensus       112 i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRyc  191 (232)
T cd07646         112 LTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENYVSDGYKTALTEERRRYC  191 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999   999999998777665     4789999999999999999999999999999999


Q ss_pred             hhhhccCcchHHHHHhhhch-hHHHHHHHHHHHHhCCCCCC
Q psy10344         73 VFVTFLKPVVDEEVAMLSEL-SHLQEVMVQLEKHTSDPYSL  112 (189)
Q Consensus        73 flV~~~~pVv~~ei~~~~e~-~~Lqe~l~~w~~~~~dP~kL  112 (189)
                      ||||+||.|++..+++|+.. ++|+++||.|++.|+||++|
T Consensus       192 flvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe~c~~~~~~  232 (232)
T cd07646         192 FLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQACSDPNKI  232 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhcCcccC
Confidence            99999999999999999884 99999999999999999986

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=99.97  E-value=1.1e-31  Score=225.88  Aligned_cols=111  Identities=46%  Similarity=0.668  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV   81 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV   81 (189)
                      .++||+.+.+++|+..++.|++||. +||++.....+++++++|+.++.+||+|++++||+||+||||||||||++||||
T Consensus       108 ~ke~k~~~~~l~K~~se~~Kl~KK~-~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~  186 (219)
T PF08397_consen  108 EKEYKRKRDELKKAESELKKLRKKS-RKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSV  186 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCC-CCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777777777777777776 555555556778999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCc
Q psy10344         82 VDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLP  113 (189)
Q Consensus        82 v~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP  113 (189)
                      ++++++||++ +++|+++|++|+++|+||++||
T Consensus       187 ~~~~~~~~~~~~~~L~~~~~~w~~~~~~~~~lP  219 (219)
T PF08397_consen  187 VKSELAFHNEAVEHLQEKLDDWQELCSDPSKLP  219 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-TTS--
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhcCcccCc
Confidence            9999999999 8999999999999999999999

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1

Probab=99.97  E-value=5.7e-31  Score=225.05  Aligned_cols=108  Identities=24%  Similarity=0.297  Sum_probs=101.6

Q ss_pred             ChhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344          1 MLKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADL-----QKALQEVNERKAILEEAEKKALRAALIEERSRYC   72 (189)
Q Consensus         1 ~ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l-----~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC   72 (189)
                      |..++|||++|+|.|+++++|+|   ||+|||+||++++..     +++|++|++||.+||.|+++|||+||+|||||||
T Consensus       110 i~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRRyc  189 (226)
T cd07645         110 MTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVTSRQSDIQKFIADGCREALLEEKRRFC  189 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999   999999999888853     6899999999999999999999999999999999


Q ss_pred             hhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344         73 VFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD  108 (189)
Q Consensus        73 flV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d  108 (189)
                      ||||+||.|+.+.+.+|+. .++|+++||.|++.|+|
T Consensus       190 FlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe~c~d  226 (226)
T cd07645         190 FLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQETCSD  226 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhcC
Confidence            9999999999988888887 49999999999999987

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=99.96  E-value=3.4e-29  Score=214.20  Aligned_cols=105  Identities=31%  Similarity=0.476  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV   81 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV   81 (189)
                      ++|||+.+.+++|...++.|++||.+++|.++....++++|++|++++.+||+|+++|||+||+||||||||||++||||
T Consensus       118 ~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v  197 (223)
T cd07605         118 KKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSV  197 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777888886667888888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhc-hhHHHHHHHHHHHHh
Q psy10344         82 VDEEVAMLSE-LSHLQEVMVQLEKHT  106 (189)
Q Consensus        82 v~~ei~~~~e-~~~Lqe~l~~w~~~~  106 (189)
                      +++++++|.. .++|+++||.|+++|
T Consensus       198 ~~~e~~~~~~~~~~L~~~l~~w~~~~  223 (223)
T cd07605         198 AKHEIAYHAKAMTLLSTRLPLWQELC  223 (223)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhcC
Confidence            9999998876 799999999999987

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

Probab=99.88  E-value=4.7e-23  Score=175.20  Aligned_cols=100  Identities=14%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFL   78 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~   78 (189)
                      ..++|||+.|+|.|+++++|+|   ||.|||+++. .-...++|+.+   +.+|++|+++|+|+||+||||||||||++|
T Consensus       111 ~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn-~~e~kE~~~~l---q~~~~~f~~~~~k~Al~eErRRy~Flvek~  186 (215)
T cd07644         111 EDSRRVYELEYRHRAANLEKCMSELWRMERQRDRN-VREMKENVNRL---RQSMQAFLKESQRAAELEEKRRYRFLAEKH  186 (215)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC-chhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999   8999998832 22234688888   899999999999999999999999999999


Q ss_pred             CcchHHHHHhhhch-hHHHHHHHHHHHH
Q psy10344         79 KPVVDEEVAMLSEL-SHLQEVMVQLEKH  105 (189)
Q Consensus        79 ~pVv~~ei~~~~e~-~~Lqe~l~~w~~~  105 (189)
                      |.|.+.-+++++.+ ++|+.+||.|++.
T Consensus       187 c~~~k~~~~yh~ka~~ll~~kl~~Wqe~  214 (215)
T cd07644         187 YLLNNTFLQFQSRARGMLQTRVPSWKEQ  214 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhccC
Confidence            99999888888875 9999999999974

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=95.88  E-value=0.13  Score=43.62  Aligned_cols=98  Identities=15%  Similarity=0.217  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--h
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFV--T   76 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV--~   76 (189)
                      ....|+|+.|+|++.+++.|.+   +|++||.++|++...-..-+.+..-.....+++ .-+++++     |=+.+-  -
T Consensus       101 ~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele-~~~~~~~-----r~al~EERr  174 (219)
T PF08397_consen  101 TQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELE-EFEKQSL-----REALLEERR  174 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence            3567899999999999999988   888899999877754444444332222222222 2333332     222222  3


Q ss_pred             ccCcchHHHHHhhhc-hhHHHHHHHHHHHH
Q psy10344         77 FLKPVVDEEVAMLSE-LSHLQEVMVQLEKH  105 (189)
Q Consensus        77 ~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~  105 (189)
                      +||-||+..+.++.. +..+.+.+..+++.
T Consensus       175 Ryc~lv~~~~~~~~~~~~~~~~~~~~L~~~  204 (219)
T PF08397_consen  175 RYCFLVEKHCSVVKSELAFHNEAVEHLQEK  204 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888888887775 56666666655554

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=95.44  E-value=0.049  Score=47.21  Aligned_cols=39  Identities=23%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHH
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQK   40 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~   40 (189)
                      +...|+|..|+|++.++++|++   ||++||.+++..+....
T Consensus       111 ~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~  152 (223)
T cd07605         111 NKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQE  152 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccH
Confidence            4567999999999999999999   89999999874444433

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>smart00721 BAR BAR domain

Probab=94.32  E-value=0.66  Score=38.14  Aligned_cols=100  Identities=26%  Similarity=0.311  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy10344          3 KKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLK   79 (189)
Q Consensus         3 ke~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~   79 (189)
                      ++.++.+...-++..|.+++.   +++++++.......+.++-+++..-...++....+-..+...-.-.|.=+|+..+.
T Consensus       134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~  213 (239)
T smart00721      134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQ  213 (239)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence            445556666666667777766   34544433221124555666676667777777777777777777777778999999


Q ss_pred             cchHHHHHhhhch-hHHHHHHHHH
Q psy10344         80 PVVDEEVAMLSEL-SHLQEVMVQL  102 (189)
Q Consensus        80 pVv~~ei~~~~e~-~~Lqe~l~~w  102 (189)
                      .|+.-++.+|..+ ..|++.++.|
T Consensus       214 ~~~~aq~~y~~~~~~~l~~l~~~l  237 (239)
T smart00721      214 ALIEAQLNFHRESYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999985 7888887765

>KOG3771|consensus

Probab=91.25  E-value=4.7  Score=38.79  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCC
Q psy10344         36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPY  110 (189)
Q Consensus        36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~  110 (189)
                      ..+.++=+++..-+.+.|+++.+-+-+.=+==-.|-=|||.-|..|+.-++.++.|++.|..+|.+......|+|
T Consensus       157 ~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dqh  231 (460)
T KOG3771|consen  157 AKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQH  231 (460)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            345567778888888888888776666655557889999999999999999999999888888877777667663

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=88.93  E-value=4.4  Score=31.78  Aligned_cols=81  Identities=20%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcch
Q psy10344          3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVV   82 (189)
Q Consensus         3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv   82 (189)
                      +.++.++.++..+..++.++++++-+++..=..........++..+..+++.+.+..-++.-.++...+--+.++..+++
T Consensus        43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v  122 (158)
T PF03938_consen   43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV  122 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888888844433222345567778899999999999999888888888888888888877776


Q ss_pred             H
Q psy10344         83 D   83 (189)
Q Consensus        83 ~   83 (189)
                      +
T Consensus       123 ~  123 (158)
T PF03938_consen  123 E  123 (158)
T ss_dssp             H
T ss_pred             H
Confidence            5

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=88.39  E-value=4.3  Score=34.91  Aligned_cols=99  Identities=12%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             hhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHH
Q psy10344         17 TDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQ   96 (189)
Q Consensus        17 ~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lq   96 (189)
                      .+++|++.|+ .|..    ..+..+++.++.-+.+++.-....|...=--|..|..||-+.+..+.+..-. ..  ..+.
T Consensus       150 k~~eK~~~K~-~ka~----~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~-~~--~~~~  221 (261)
T cd07648         150 KEIEKAEAKL-KKAQ----DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSE-NH--SAVG  221 (261)
T ss_pred             HHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--chHH
Confidence            3455666555 3322    3567788888888888888888888888888888888887776666442222 22  2333


Q ss_pred             HHHHHHHHHhCCCCCCchHHHHHHHHhc
Q psy10344         97 EVMVQLEKHTSDPYSLPPASEQVMADMK  124 (189)
Q Consensus        97 e~l~~w~~~~~dP~kLP~~seqvI~dlk  124 (189)
                      +..+........- ..+.++..+|...+
T Consensus       222 ~~~e~~~~~~~~i-d~~~Di~~fv~~~g  248 (261)
T cd07648         222 QVHEEFKRQVDEL-TVDKLLRQFVESKG  248 (261)
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHcCC
Confidence            3444443333322 23467778877765

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=88.16  E-value=9.2  Score=30.37  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcch
Q psy10344          3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVV   82 (189)
Q Consensus         3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv   82 (189)
                      ++.++......++.-|.++.+.++.+-...+..+...+-++.....+..+.+.....+-...   -.|.=+|...+..|+
T Consensus       131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~---~~~~~~l~~~l~~~i  207 (229)
T PF03114_consen  131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLF---AKRQDILEPCLQSFI  207 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            44566666666677777777755522221111111133444444444444444444444333   344556668888889


Q ss_pred             HHHHHhhhch-hHHHHHHHHHH
Q psy10344         83 DEEVAMLSEL-SHLQEVMVQLE  103 (189)
Q Consensus        83 ~~ei~~~~e~-~~Lqe~l~~w~  103 (189)
                      ..++.+|..+ ..|++..+.|.
T Consensus       208 ~~q~~~~~~~~~~l~~l~~~l~  229 (229)
T PF03114_consen  208 EAQLQYFQQLYQILEELQPQLA  229 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999884 88888887763

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=86.94  E-value=9.4  Score=29.12  Aligned_cols=86  Identities=24%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             HHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344          5 YKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV   81 (189)
Q Consensus         5 ~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV   81 (189)
                      .+..+....++..+.+...   +++++|+.  ....+.++-+++..-....+.+..+-+.+.-.=.-.+.=.|+..+..+
T Consensus        96 ~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~--~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~  173 (194)
T cd07307          96 IKKRRKKLDKARLDYDAAREKLKKLRKKKK--DSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSF  173 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444444444444444444   22322222  223344444444444444444444444333221222222788888888


Q ss_pred             hHHHHHhhhch
Q psy10344         82 VDEEVAMLSEL   92 (189)
Q Consensus        82 v~~ei~~~~e~   92 (189)
                      ++.++.++.++
T Consensus       174 ~~~q~~~~~~~  184 (194)
T cd07307         174 IEAQSEFFKEV  184 (194)
T ss_pred             HHHHHHHHHhH
Confidence            88888888875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=84.28  E-value=15  Score=32.25  Aligned_cols=99  Identities=7%  Similarity=0.056  Sum_probs=64.1

Q ss_pred             hhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHH
Q psy10344         17 TDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQ   96 (189)
Q Consensus        17 ~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lq   96 (189)
                      .+++|++.|+ +|.    ...+..+++.++.-+..+++-....|...=--|..|..||-+.+..+.+..-...   ..+.
T Consensus       157 k~leK~~~k~-~ka----~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~---~~~~  228 (269)
T cd07673         157 REIEKAAVKS-KKA----TESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIH---IQIG  228 (269)
T ss_pred             HHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHH
Confidence            4455555555 222    2245678888888888999999999999999999999999988776655222221   3333


Q ss_pred             HHHHHHHHHhCCCCCCchHHHHHHHHhc
Q psy10344         97 EVMVQLEKHTSDPYSLPPASEQVMADMK  124 (189)
Q Consensus        97 e~l~~w~~~~~dP~kLP~~seqvI~dlk  124 (189)
                      +..+........- ....++..+|...+
T Consensus       229 ~~~e~ir~~le~~-d~~~Di~~fi~~~g  255 (269)
T cd07673         229 QVHEEFINNMANT-TVESLIQKFAESKG  255 (269)
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHhcC
Confidence            3334444333322 23478888888765

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II

Probab=82.65  E-value=27  Score=30.27  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch
Q psy10344         16 STDTLRLQKKVGRKGV---VGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL   92 (189)
Q Consensus        16 ~~~~~K~QKK~RRKg~---g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~   92 (189)
                      ..|-++++.++ +|=+   +.--..+-++-+++..-+.+.|.++..-.-+.=.===.|-=||+.+|.+++..++.++.|+
T Consensus       117 llDYD~~r~~~-~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~  195 (211)
T cd07611         117 LVDYDSARHHL-EALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEI  195 (211)
T ss_pred             HhhHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence            45666666444 2211   1122455678888888888888877654444333335788999999999999999999997


Q ss_pred             hHHHHHHHH
Q psy10344         93 SHLQEVMVQ  101 (189)
Q Consensus        93 ~~Lqe~l~~  101 (189)
                      +.+...|..
T Consensus       196 ~k~~~~l~~  204 (211)
T cd07611         196 SVLCHKLYE  204 (211)
T ss_pred             HHHHHHHHH
Confidence            666555543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=81.99  E-value=18  Score=31.60  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCc
Q psy10344         36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLP  113 (189)
Q Consensus        36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP  113 (189)
                      +.+..-|++..++..+-.+.....+.+.|-.|-    -++..+..|++-++.||.. +++|++.++.++....+...-|
T Consensus       161 ~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~----e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~~kp  235 (244)
T cd07595         161 DALKDEYEEAELKLEQCRDALATDMYEFLAKEA----EIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSPSKP  235 (244)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            455666676666666666666666666444433    3455666778889999987 5999999999888877655444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=81.14  E-value=32  Score=29.60  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHH
Q psy10344         35 NADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVM   99 (189)
Q Consensus        35 ~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l   99 (189)
                      ...+-++-+++..-+.+.+.+...-..+.=.===.|-=||+..|.+++..+..++.|++.+...|
T Consensus       138 e~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l  202 (211)
T cd07588         138 DQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKL  202 (211)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777777777777665544443222246778999999999999999999975554444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein

Probab=80.89  E-value=28  Score=30.27  Aligned_cols=83  Identities=7%  Similarity=0.044  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCCCCchHHH
Q psy10344         38 LQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASE  117 (189)
Q Consensus        38 l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP~~se  117 (189)
                      +..+++..+..+.++++.....|...=--|..|..||-+.+.-+.+......   ..+.+..+.........+ ...++.
T Consensus       166 y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~---~~~~~~~e~~~~~l~~id-~~~Di~  241 (261)
T cd07674         166 LRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTH---VQIGQVHEEFKQNVENVG-VENLIR  241 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHhCC-HHHHHH
Confidence            4556777777788888888888888888899999999998776643221211   224444444444444333 457788


Q ss_pred             HHHHHhc
Q psy10344        118 QVMADMK  124 (189)
Q Consensus       118 qvI~dlk  124 (189)
                      .+|...+
T Consensus       242 ~fv~~~~  248 (261)
T cd07674         242 KFAESKG  248 (261)
T ss_pred             HHHHhCC
Confidence            8888775

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2d1l_A	253	Structure Of F-Actin Binding Domain Imd Of Mim (Mis		2e-21

>pdb|2D1L|A Chain A, Structure Of F-Actin Binding Domain Imd Of Mim (Missing In Metastasis) Length = 253

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN---ADLQKALQEVNXXXXXXXXXXXXX 59
           K+YKKAR E+KK+S+DTL+LQKK  +    GR      L  ALQ+VN             
Sbjct: 131 KEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQA 190
Query: 60  XXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
                   R R+C F++ L+PV++EE++ L E++HLQ +   L+  T DP+ LP +SEQV
Sbjct: 191 VRKALIEERGRFCTFISXLRPVIEEEISXLGEITHLQTISEDLKSLTXDPHKLPSSSEQV 250
Query: 120 MAD 122
           + D
Sbjct: 251 ILD 253
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	4e-30
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	4e-26
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} Length = 253

 Score =  110 bits (275), Expect = 4e-30
 Identities = 63/123 (51%), Positives = 90/123 (73%), Gaps = 3/123 (2%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD---LQKALQEVNERKAILEEAEKKA 59
           K+YKKAR E+KK+S+DTL+LQKK  +    GR      L  ALQ+VN++  +LEE EK+A
Sbjct: 131 KEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQA 190

Query: 60  LRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
           +R ALIEER R+C F++ L+PV++EE++ML E++HLQ +   L+  T DP+ LP +SEQV
Sbjct: 191 VRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQV 250

Query: 120 MAD 122
           + D
Sbjct: 251 ILD 253

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A Length = 253

 Score = 99.6 bits (247), Expect = 4e-26
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD-LQKALQEVNERKAILEEAEKKAL 60
             + +     L K   +  +L+KK        + +D   + +  ++ ++  LE       
Sbjct: 127 QTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGY 186

Query: 61  RAALIEERSRYCVFVTFLKPVVDEEVAMLSELSH-LQEVMVQLEKHTSDPYSLPPASEQV 119
           + AL EER R+C  V     V     A  S+    L + +   ++  +DP  +P  + Q+
Sbjct: 187 KTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQL 246

Query: 120 MADMKGS 126
           M  +  +
Sbjct: 247 MQQVASN 253

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus} Length = 222

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
            +Y+   + L+K  ++  R+++K  +          ++  + VN   A ++    ++ RA
Sbjct: 126 IEYRHRAANLEKCMSELWRMERKRDKN--------AREMKESVNRLHAQMQAFVSESKRA 177

Query: 63  ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQE 97
           A +EE+ RY         + ++ + + +       
Sbjct: 178 AELEEKRRYRF-------LAEKHLLLSNTFLQFLG 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 2   LKKYKK----ARSELKKRSTDTLRLQKKVGRKGVVGRNADL-QKALQEVNERKAILEEAE 56
           LK YK        + ++     L    K+    +  +  DL + AL    E +AI EEA 
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEEAH 584

Query: 57  KKALR 61
           K+  R
Sbjct: 585 KQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	100.0
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	100.0
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	99.9
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	94.98
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	87.88
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	87.37
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	84.69
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	80.4

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=293.66  Aligned_cols=121  Identities=51%  Similarity=0.818  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhc---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRK---GVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFL   78 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRK---g~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~   78 (189)
                      +++||+||+|||+++.+++|+|||+||+   |+++.+++++++|++|++|+.+||+|++++||+|||||||||||||++|
T Consensus       130 ~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~AL~EERrRycflv~~l  209 (253)
T 2d1l_A          130 AKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISML  209 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999776   6677778899999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhhhchhHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q psy10344         79 KPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMAD  122 (189)
Q Consensus        79 ~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP~~seqvI~d  122 (189)
                      |||+++||+|+++++||+++|++|+++|+||++||+++|+||.|
T Consensus       210 ~pv~~~e~~~~~e~~~l~~~l~~~~~~~~~p~~LP~~se~lI~~  253 (253)
T 2d1l_A          210 RPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQVILD  253 (253)
T ss_dssp             HHHHHHHHGGGGGHHHHHHHHHHHHHHTSCTTSCCGGGCC----
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccCchHHHHhhcC
Confidence            99999999999999999999999999999999999999999986

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=100.00  E-value=8.2e-35  Score=250.62  Aligned_cols=121  Identities=22%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy10344          5 YKKARSELKKRSTDTLRLQ---KKVGRKGVVGRN-----ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVT   76 (189)
Q Consensus         5 ~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~-----~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~   76 (189)
                      -|+|..|+|++.++++|++   ||+|||++|+++     ..+++++++|++|+.+||+|++++||+||+||||||||||+
T Consensus       123 ~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~  202 (253)
T 2ykt_A          123 LKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVE  202 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666666666   566666554433     45689999999999999999999999999999999999999


Q ss_pred             ccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCchHHHHHHHHhcC
Q psy10344         77 FLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLPPASEQVMADMKG  125 (189)
Q Consensus        77 ~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP~~seqvI~dlk~  125 (189)
                      +||||+++++.+|.. .++|+++||+|+++|+||++||+++|+||.|++.
T Consensus       203 ~~~~v~~~~~~~h~~~~~~L~~~l~~w~~l~~~~~~lP~~se~lI~~~~~  252 (253)
T 2ykt_A          203 KQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQLMQQVAS  252 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcChhcCChHHHHHHHHhhc
Confidence            999999999999988 5999999999999999999999999999999974

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}

Probab=99.90  E-value=2.2e-24  Score=183.59  Aligned_cols=100  Identities=19%  Similarity=0.222  Sum_probs=89.7

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFL   78 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~   78 (189)
                      ..+.|+|+.|+|.+++.++|++   ||.|||++  +++  .+++++|+.++.+|+.|++++||+||+|||||||||||+|
T Consensus       118 ~~~~K~y~~e~k~~~~~leK~~~elkK~~rksq--k~~--~k~~e~v~~~q~el~~f~~~s~r~Al~EErRRYcFL~ekh  193 (222)
T 3ok8_A          118 KDSCQHYEIEYRHRAANLEKCMSELWRMERKRD--KNA--REMKESVNRLHAQMQAFVSESKRAAELEEKRRYRFLAEKH  193 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc--cCh--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999   88888887  333  3489999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhhhc-hhHHHHHHHHHHHH
Q psy10344         79 KPVVDEEVAMLSE-LSHLQEVMVQLEKH  105 (189)
Q Consensus        79 ~pVv~~ei~~~~e-~~~Lqe~l~~w~~~  105 (189)
                      |.|+.....+|+. .+.|+++||.|++.
T Consensus       194 c~~~~~~~~~h~k~~~~L~~kl~~W~e~  221 (222)
T 3ok8_A          194 LLLSNTFLQFLGRARGMLQNRVLLWKEQ  221 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccchhhhhc
Confidence            9999877777776 59999999999874

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=94.98  E-value=0.065  Score=45.76  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCC-----CCchHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVV-----GRNADLQK-------ALQE---VNERKAILEEAEKKALRAALIE   66 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g-----~~~~~l~~-------~lqd---vs~rq~elee~e~~~lR~ALlE   66 (189)
                      +++||+.+.+++|+..++.|++||. ++|++     +...+..+       .++.   -..|...+|+  +.-+.- || 
T Consensus       127 ~~e~k~~~~~l~K~~~e~~kl~KK~-k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EE--RrRycf-lv-  201 (253)
T 2ykt_A          127 QTEQRSKGDALDKCQAELKKLRKKS-QGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEE--RRRFCF-LV-  201 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HH-
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHhhc-cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HH-
Confidence            6899999999999999999999998 55532     44444322       1111   1123333332  222332 33 


Q ss_pred             hhhhhhhhhhccCcchHHHHHhhhc-hhHHHHH
Q psy10344         67 ERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEV   98 (189)
Q Consensus        67 ERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~   98 (189)
                        .+||-|++....+...-..++.+ +..+++.
T Consensus       202 --~~~~~v~~~~~~~h~~~~~~L~~~l~~w~~l  232 (253)
T 2ykt_A          202 --EKQCAVAKNSAAYHSKGKELLAQKLPLWQQA  232 (253)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence              57899999988876555667666 4555544

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=87.88  E-value=4.8  Score=32.62  Aligned_cols=85  Identities=14%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             HHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchH
Q psy10344          7 KARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVD   83 (189)
Q Consensus         7 r~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~   83 (189)
                      +.......|.-|.++++   +|++.|+. .....+.++-+++..-+.++|.+...-..+.=.=.-.|.=||+.++..|+.
T Consensus       148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~-kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~  226 (251)
T 2fic_A          148 SRIAKRGRKLVDYDSARHHYESLQTAKK-KDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAG  226 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333555566554   33433322 122344556666665566666655444444444445566778889999999


Q ss_pred             HHHHhhhch
Q psy10344         84 EEVAMLSEL   92 (189)
Q Consensus        84 ~ei~~~~e~   92 (189)
                      .++.+|.++
T Consensus       227 ~Q~~f~~~~  235 (251)
T 2fic_A          227 LEENFHKEM  235 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999884

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=87.37  E-value=3.3  Score=34.31  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             hhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCch
Q psy10344         73 VFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLPP  114 (189)
Q Consensus        73 flV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP~  114 (189)
                      -++..+..|++-++.||.. .+.|++.++.|.+...++..-|-
T Consensus       210 e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p~  252 (256)
T 1zww_A          210 EQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPR  252 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            4457788899999999998 59999999999998888877773

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=84.69  E-value=3.2  Score=33.13  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             HHHHHhhhhhh-----hhhhccCcchHHHHHhhhchh
Q psy10344         62 AALIEERSRYC-----VFVTFLKPVVDEEVAMLSELS   93 (189)
Q Consensus        62 ~ALlEERrRfC-----flV~~~~pVv~~ei~~~~e~~   93 (189)
                      +.|.+|=-+|.     +|+.++..|+..++.+|.++.
T Consensus       187 ~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~  223 (244)
T 1uru_A          187 TELHDELPALYDSRILFLVTNLQTLFATEQVFHNETA  223 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555554     899999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1y2oa1	248	a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain	3e-20

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 3e-20
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD-LQKALQEVNERKAILEEAEKKA 59
              + +     L K   +  +L+KK        + +D   + +  ++ ++  LE      
Sbjct: 123 YQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDG 182

Query: 60  LRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSH-LQEVMVQLEKHTSDPYSLPPASEQ 118
            + AL EER R+C  V     V     A  S+    L + +   ++  +DP  +P  + Q
Sbjct: 183 YKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQ 242

Query: 119 VMADM 123
           +M  +
Sbjct: 243 LMQQV 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.87
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	93.77
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	81.73

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6e-22  Score=162.69  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCc
Q psy10344          2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN-ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKP   80 (189)
Q Consensus         2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~-~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~p   80 (189)
                      .|++|++..++++...++.|++||.+++...... .....+.++++.++.+++++...+++.+++|||+||||||+.+|+
T Consensus       124 ~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~  203 (248)
T d1y2oa1         124 QTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCA  203 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777777777788888777444433222 233678899999999999999999999999999999999999999


Q ss_pred             chHHHHHhhhch-hHHHHHHHHHHHHhCCCCCCchHHHHHHHHh
Q psy10344         81 VVDEEVAMLSEL-SHLQEVMVQLEKHTSDPYSLPPASEQVMADM  123 (189)
Q Consensus        81 Vv~~ei~~~~e~-~~Lqe~l~~w~~~~~dP~kLP~~seqvI~dl  123 (189)
                      |++.+++||++. +.|++.+|.|+++|.||++||+.+++||.+|
T Consensus       204 ~~~a~~~~~~q~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~  247 (248)
T d1y2oa1         204 VAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQLMQQV  247 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhCCHHHHHHHHhh
Confidence            999999999996 7899999999999999999999999999997

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.097  Score=40.95  Aligned_cols=75  Identities=9%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             HHHHhhhhhhhhhhccCcchHHHHHhhhch-hHH----H----HHHHHHHHHhCCCCCCchHHHHHHHHhcCCCCcccCC
Q psy10344         63 ALIEERSRYCVFVTFLKPVVDEEVAMLSEL-SHL----Q----EVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLP  133 (189)
Q Consensus        63 ALlEERrRfCflV~~~~pVv~~ei~~~~e~-~~L----q----e~l~~w~~~~~dP~kLP~~seqvI~dlk~s~~~~~~~  133 (189)
                      ..+++|++|.++ +.++.++..++.+|+.. +.|    .    +.-..+++....-+..-...++.+.++......+-.+
T Consensus       181 ~~l~~~k~~~~l-~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (268)
T d2elba1         181 NTLQYKKKIALL-EPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVP  259 (268)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSS
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence            367889999885 46688888888888762 222    2    2223344554445556677888899998766655334


Q ss_pred             CCCCC
Q psy10344        134 SPTSS  138 (189)
Q Consensus       134 ~p~~s  138 (189)
                      +|++.
T Consensus       260 ~~~p~  264 (268)
T d2elba1         260 DPDPT  264 (268)
T ss_dssp             SCCTT
T ss_pred             CCCCC
Confidence            44433

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.73  E-value=3.4  Score=29.81  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=27.4

Q ss_pred             hhhhhhhhhhccCcchHHHHHhhhch-hHHHHHHHHHHHH
Q psy10344         67 ERSRYCVFVTFLKPVVDEEVAMLSEL-SHLQEVMVQLEKH  105 (189)
Q Consensus        67 ERrRfCflV~~~~pVv~~ei~~~~e~-~~Lqe~l~~w~~~  105 (189)
                      +..|.-+|+..+..++..++.+++.+ ..+.+..+.+..+
T Consensus       172 ~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l  211 (217)
T d1urua_         172 YDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL  211 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555688888888999999999884 5555555555444