Psyllid ID: psy10364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MFRASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG
Secondary Structure (PSIPRED)
ccEEEEEEccEEEEEEEEccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccEEEEEccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mfrastyylstlnygtfwilgrcnrekppckyfhppqhlkdqllINGRNHLALKNALLQqmgltpgqpmvpgqipavvsaafyphwilfptddvASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG
Flexible Loop (DISEMBL)
mfrastyylstlnyGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKnlksfesrnkeerkeeltgyhklg
Low Complexity Region (SEG)
MFRASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG
Disordered region (IsUnstruct)
****STYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNL**********************
Disordered Region (DISOPRED)
*******YLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLAL***********************VVSAAFYPHWILFPTDDVASAIWRISCLK********************H***
Disordered Region (DISEMBL)
MFRASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFES*****************
Disordered Region (DISPRO)
*FRASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEER*EE********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
O16011	297	Protein muscleblind OS=Dr	no	N/A	0.496	0.215	0.781	5e-26
Q94250	324	Muscleblind-like protein	yes	N/A	0.395	0.157	0.730	3e-15
A8XND8	299	Muscleblind-like protein	N/A	N/A	0.333	0.143	0.767	2e-13
Q5ZKW9	369	Muscleblind-like protein	no	N/A	0.488	0.170	0.468	2e-07
Q9JKP5	341	Muscleblind-like protein	no	N/A	0.488	0.184	0.468	2e-07
Q9NR56	388	Muscleblind-like protein	yes	N/A	0.379	0.126	0.534	3e-07
F2Z3T4	373	Muscleblind-like protein	no	N/A	0.379	0.131	0.535	4e-07
Q8C181	373	Muscleblind-like protein	no	N/A	0.379	0.131	0.535	4e-07
Q5R4F5	373	Muscleblind-like protein	no	N/A	0.379	0.131	0.535	5e-07
Q5VZF2	373	Muscleblind-like protein	no	N/A	0.379	0.131	0.535	5e-07

>sp|O16011|MBL_DROME Protein muscleblind OS=Drosophila melanogaster GN=mbl PE=2 SV=2

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 58/64 (90%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNR+KPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMG+ PGQP++ GQ+PAV 
Sbjct: 62  IKGRCNRDKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGIAPGQPVISGQVPAVA 121

Query: 79  SAAF 82
           +  +
Sbjct: 122 TNPY 125

Required for terminal differentiation of photoreceptor cells. Vital for embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|Q94250|MBL_CAEEL Muscleblind-like protein OS=Caenorhabditis elegans GN=mbl-1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMV 70
           I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L  Q+  T G PMV
Sbjct: 82  IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQLNQT-GTPMV 132

Binds to RNA with repeat sequences 5'-CUG-3' and 5'-CCUG-3'.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XND8|MBL_CAEBR Muscleblind-like protein OS=Caenorhabditis briggsae GN=mbl-1 PE=3 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 35/43 (81%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQM 61
           I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L  Q+
Sbjct: 82  IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQI 124

Binds to RNA with repeat sequences CUG and CCUG.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q5ZKW9|MBNL1_CHICK Muscleblind-like protein 1 OS=Gallus gallus GN=MBNL1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 16/79 (20%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVPGQ 73
           GRC+RE   CKY HPP HLK QL INGRN+L  +     L QQM L     PG P+ P  
Sbjct: 59  GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVP 116

Query: 74  IPAV-------VSAAFYPH 85
           + +V        SAAF P+
Sbjct: 117 MFSVAPSLATNASAAFNPY 135

Involved in pre-mRNA alternative splicing regulation. Binds to CUG triplet repeat in RNA.

Gallus gallus (taxid: 9031)

>sp|Q9JKP5|MBNL1_MOUSE Muscleblind-like protein 1 OS=Mus musculus GN=Mbnl1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 16/79 (20%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVPGQ 73
           GRC+RE   CKY HPP HLK QL INGRN+L  +     L QQM L     PG P+ P  
Sbjct: 59  GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVP 116

Query: 74  IPAV-------VSAAFYPH 85
           + +V        SAAF P+
Sbjct: 117 MFSVAPSLATSASAAFNPY 135

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. Regulates the TNNT2 exon 5 skipping through competition with U2AF2. Inhibits the formation of the spliceosome A complex on intron 4 of TNNT2 pre-mRNA. Binds to the stem-loop structure within the polypyrimidine tract of TNNT2 intron 4 during spliceosome assembly. Binds to the 5'-YGCU(U/G)Y-3'consensus sequence. Binds to the IR RNA. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs.

Mus musculus (taxid: 10090)

>sp|Q9NR56|MBNL1_HUMAN Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 9/58 (15%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVP 71
           GRC+RE   CKY HPP HLK QL INGRN+L  +     L QQM L     PG P+ P
Sbjct: 59  GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQP 114

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. Regulates the TNNT2 exon 5 skipping through competition with U2AF2. Inhibits the formation of the spliceosome A complex on intron 4 of TNNT2 pre-mRNA. Binds to the stem-loop structure within the polypyrimidine tract of TNNT2 intron 4 during spliceosome assembly. Binds to the 5'-YGCU(U/G)Y-3'consensus sequence. Binds to the IR RNA. Binds to expanded CUG repeat RNA, which folds into a hairpin structure containing GC base pairs and bulged, unpaired U residues.

Homo sapiens (taxid: 9606)

>sp|F2Z3T4|MBNL2_RAT Muscleblind-like protein 2 OS=Rattus norvegicus GN=Mbnl2 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
           GRC+RE   CKY HPP HLK QL INGRN+L  +      L QQM  + PG P+ P
Sbjct: 59  GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Rattus norvegicus (taxid: 10116)

>sp|Q8C181|MBNL2_MOUSE Muscleblind-like protein 2 OS=Mus musculus GN=Mbnl2 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
           GRC+RE   CKY HPP HLK QL INGRN+L  +      L QQM  + PG P+ P
Sbjct: 59  GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Mus musculus (taxid: 10090)

>sp|Q5R4F5|MBNL2_PONAB Muscleblind-like protein 2 OS=Pongo abelii GN=MBNL2 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
           GRC+RE   CKY HPP HLK QL INGRN+L  +      L QQM  + PG P+ P
Sbjct: 59  GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Pongo abelii (taxid: 9601)

>sp|Q5VZF2|MBNL2_HUMAN Muscleblind-like protein 2 OS=Homo sapiens GN=MBNL2 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)

Query: 21  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
           GRC+RE   CKY HPP HLK QL INGRN+L  +      L QQM  + PG P+ P
Sbjct: 59  GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
345493682	619	PREDICTED: hypothetical protein LOC10012	0.511	0.106	0.818	4e-27
345493680	764	PREDICTED: hypothetical protein LOC10012	0.496	0.083	0.818	5e-27
380013554	631	PREDICTED: uncharacterized protein LOC10	0.480	0.098	0.854	1e-26
350423316	864	PREDICTED: hypothetical protein LOC10074	0.480	0.071	0.843	2e-26
328779531	229	PREDICTED: protein muscleblind-like [Api	0.534	0.301	0.797	2e-26
189237273	570	PREDICTED: similar to muscleblind CG3319	0.480	0.108	0.843	4e-26
270007552	534	hypothetical protein TcasGA2_TC014149 [T	0.480	0.116	0.843	5e-26
157119898	312	hypothetical protein AaeL_AAEL001527 [Ae	0.534	0.221	0.75	1e-25
158288074	185	AGAP011554-PA [Anopheles gambiae str. PE	0.480	0.335	0.822	2e-25
386768195	803	muscleblind, isoform K [Drosophila melan	0.496	0.079	0.781	3e-25

>gi|345493682|ref|XP_003427127.1| PREDICTED: hypothetical protein LOC100120957 isoform 2 [Nasonia vitripennis]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 60/66 (90%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGL+PGQP+VPGQ+P V 
Sbjct: 61  IKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLSPGQPLVPGQVPTVA 120

Query: 79  SAAFYP 84
           +  + P
Sbjct: 121 TNPYLP 126

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493680|ref|XP_001604553.2| PREDICTED: hypothetical protein LOC100120957 isoform 1 [Nasonia vitripennis]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 60/66 (90%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGL+PGQP+VPGQ+P V 
Sbjct: 61  IKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLSPGQPLVPGQVPTVA 120

Query: 79  SAAFYP 84
           +  + P
Sbjct: 121 TNPYLP 126

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013554|ref|XP_003690818.1| PREDICTED: uncharacterized protein LOC100871176 [Apis florea]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 58/62 (93%)

Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSA 80
          GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGLTP QP+VPGQ+PAV + 
Sbjct: 15 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPAQPLVPGQVPAVATN 74

Query: 81 AF 82
           +
Sbjct: 75 PY 76

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423316|ref|XP_003493442.1| PREDICTED: hypothetical protein LOC100749379 [Bombus impatiens]

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/64 (84%), Positives = 59/64 (92%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGLTP QP+VPGQ+PAV 
Sbjct: 61  IKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPAQPLVPGQVPAVA 120

Query: 79  SAAF 82
           +  +
Sbjct: 121 TNPY 124

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779531|ref|XP_001121585.2| PREDICTED: protein muscleblind-like [Apis mellifera]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 61/69 (88%)

Query: 14 YGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQ 73
          Y   +I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGLTP QP+VPGQ
Sbjct: 4  YLAVFIKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPAQPLVPGQ 63

Query: 74 IPAVVSAAF 82
          +PAV +  +
Sbjct: 64 VPAVATNPY 72

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237273|ref|XP_001812946.1| PREDICTED: similar to muscleblind CG33197-PA [Tribolium castaneum]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 59/64 (92%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGLTPGQP+VPGQ+ AV 
Sbjct: 61  IKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPGQPLVPGQVQAVA 120

Query: 79  SAAF 82
           +  +
Sbjct: 121 TNPY 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007552|gb|EFA04000.1| hypothetical protein TcasGA2_TC014149 [Tribolium castaneum]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 59/64 (92%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMGLTPGQP+VPGQ+ AV 
Sbjct: 61  IKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPGQPLVPGQVQAVA 120

Query: 79  SAAF 82
           +  +
Sbjct: 121 TNPY 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119898|ref|XP_001659561.1| hypothetical protein AaeL_AAEL001527 [Aedes aegypti] gi|108883145|gb|EAT47370.1| AAEL001527-PA, partial [Aedes aegypti]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%), Gaps = 3/72 (4%)

Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSA 80
          GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA++QQMG++PGQP++PGQ+PAV   
Sbjct: 6  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAIMQQMGISPGQPVLPGQVPAV--- 62

Query: 81 AFYPHWILFPTD 92
          A  P+    PT 
Sbjct: 63 ATNPYLASMPTS 74

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288074|ref|XP_309952.4| AGAP011554-PA [Anopheles gambiae str. PEST] gi|157019299|gb|EAA05722.4| AGAP011554-PA [Anopheles gambiae str. PEST]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSA 80
          GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMG++PGQP++PGQ+PAV + 
Sbjct: 1  GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGISPGQPVLPGQVPAVATN 60

Query: 81 AF 82
           +
Sbjct: 61 PY 62

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386768195|ref|NP_001246393.1| muscleblind, isoform K [Drosophila melanogaster] gi|383302555|gb|AFH08146.1| muscleblind, isoform K [Drosophila melanogaster]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 58/64 (90%)

Query: 19  ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
           I GRCNR+KPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMG+ PGQP++ GQ+PAV 
Sbjct: 62  IKGRCNRDKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGIAPGQPVISGQVPAVA 121

Query: 79  SAAF 82
           +  +
Sbjct: 122 TNPY 125

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
WB|WBGene00019347	324	mbl-1 [Caenorhabditis elegans	0.395	0.157	0.730	7.4e-16
UNIPROTKB|Q94250	324	mbl-1 "Muscleblind-like protei	0.395	0.157	0.730	7.4e-16
UNIPROTKB|Q86VM6	343	MBNL1 "MBNL1 protein" [Homo sa	0.387	0.145	0.576	1.8e-11
UNIPROTKB|O95205	255	MBLL "Muscleblind-like protein	0.379	0.192	0.571	1.5e-10
UNIPROTKB|K7GN96	283	MBNL3 "Uncharacterized protein	0.224	0.102	0.709	1.7e-10
UNIPROTKB|E2QSA2	342	MBNL3 "Uncharacterized protein	0.224	0.084	0.709	3.5e-10
RGD|1565834	343	Mbnl3 "muscleblind-like splici	0.224	0.084	0.709	4.3e-10
MGI|MGI:2444912	342	Mbnl3 "muscleblind-like 3 (Dro	0.224	0.084	0.677	4.3e-10
UNIPROTKB|F1RP47	373	MBNL2 "Uncharacterized protein	0.379	0.131	0.589	4.5e-10
UNIPROTKB|F1NLY7	379	MBNL2 "Uncharacterized protein	0.379	0.129	0.571	5e-10

WB|WBGene00019347 mbl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 38/52 (73%), Positives = 40/52 (76%)

Query:    19 ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMV 70
             I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L  Q+  T G PMV
Sbjct:    82 IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQLNQT-GTPMV 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q94250 mbl-1 "Muscleblind-like protein" [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 38/52 (73%), Positives = 40/52 (76%)

Query:    19 ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMV 70
             I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L  Q+  T G PMV
Sbjct:    82 IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQLNQT-GTPMV 132

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|Q86VM6 MBNL1 "MBNL1 protein" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 34/59 (57%), Positives = 39/59 (66%)

Query:    20 LGRCNREKPPCKYFHPPQHLKDQLLINGRNHLAL-KN-ALL-QQMGLT----PGQPMVP 71
             +GRC+RE   CKY HPP HLK QL INGRN+L   KN A+L QQM L     PG P+ P
Sbjct:     1 MGRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQP 57

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O95205 MBLL "Muscleblind-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 32/56 (57%), Positives = 36/56 (64%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLAL-KNA---LLQQMG-LTPGQPMVP 71
             GRC+RE   CKY HPP HLK QL INGRN+L   K A   L QQM  + PG P+ P
Sbjct:    59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|K7GN96 MBNL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 22/31 (70%), Positives = 23/31 (74%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
             GRC RE   CKY HPP HLK QL INGRN+L
Sbjct:     1 GRCAREN--CKYLHPPPHLKTQLEINGRNNL 29

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2QSA2 MBNL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 113 (44.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
 Identities = 22/31 (70%), Positives = 23/31 (74%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
             GRC RE   CKY HPP HLK QL INGRN+L
Sbjct:    60 GRCAREN--CKYLHPPPHLKTQLEINGRNNL 88

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1565834 Mbnl3 "muscleblind-like splicing regulator 3" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 22/31 (70%), Positives = 23/31 (74%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
             GRC RE   CKY HPP HLK QL INGRN+L
Sbjct:    60 GRCTREN--CKYLHPPPHLKSQLEINGRNNL 88

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO

GO:0045662 "negative regulation of myoblast differentiation" evidence=IEA;ISO

MGI|MGI:2444912 Mbnl3 "muscleblind-like 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
             GRC RE   CKY HPP HLK QL +NGRN+L
Sbjct:    60 GRCTREN--CKYLHPPPHLKSQLEVNGRNNL 88

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0045662 "negative regulation of myoblast differentiation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RP47 MBNL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 33/56 (58%), Positives = 36/56 (64%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLAL-KNA---LLQQMG-LTPGQPMVP 71
             GRC+RE   CKY HPP HLK QL INGRN+L   K A   L QQM  L PG P+ P
Sbjct:    59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFLFPGSPLHP 112

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NLY7 MBNL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
 Identities = 32/56 (57%), Positives = 35/56 (62%)

Query:    21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLAL-KNA---LLQQMG-LTPGQPMVP 71
             GRC RE   CKY HPP HLK QL INGRN+L   K A   L QQM  + PG P+ P
Sbjct:    59 GRCTREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLQP 112

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG2494|consensus	331		99.75
KOG2494|consensus	331		99.27
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	93.12
smart00356	27	ZnF_C3H1 zinc finger.	89.05

>KOG2494|consensus

Probab=99.75  E-value=6.6e-19  Score=149.16  Aligned_cols=59  Identities=53%  Similarity=0.831  Sum_probs=50.8

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhhHHHHHhhhhhhhHHHH---HHHHhcCCCCCCCCcc
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLTPGQPMVP   71 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HLk~qL~ingrnh~a~kn---a~aqqm~~~Pg~pm~~   71 (129)
                      -.++|+||+||||+||+  |||+|||+|||+||+||||+++++|+   |.++|+...||+||..
T Consensus        70 ~v~aC~Ds~kgrCsR~n--CkylHpp~hlkdql~ingrn~l~lq~~~aA~~~q~~~~~g~Pi~~  131 (331)
T KOG2494|consen   70 RVIACFDSQKGRCSREN--CKYLHPPQHLKDQLKINGRNNLILQKTAAAMLAQQMQGPGTPICS  131 (331)
T ss_pred             eEEEEeccccCccCccc--ceecCCChhhhhhhhhcccccHHHHHHHHhhhcccccCCCccccc
Confidence            36789999999999999  99999999999999999999999988   4444444448887776

>KOG2494|consensus

Probab=99.27  E-value=1.3e-12  Score=111.17  Aligned_cols=82  Identities=26%  Similarity=0.438  Sum_probs=62.0

Q ss_pred             cccceeehhhcccccCCCCCceecCCChhhHHHHHhhhhhhhHHHHHHHHhcCCCCCCCCccCCccceecccCCCCcccc
Q psy10364         10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILF   89 (129)
Q Consensus        10 ~~~~~c~d~iKGRC~RekppCKYfHPP~HLk~qL~ingrnh~a~kna~aqqm~~~Pg~pm~~gq~Pa~v~~a~~Ph~~L~   89 (129)
                      .+.+.|++|++|||++|+  |||||+|.|++.  +++..+++.+. .+++     ||. +-.+++            ..-
T Consensus       229 ~t~~~~~~~t~~~~~~en--~~~~~~~~h~~~--~~~aa~~~~~~-~l~a-----pga-l~~pkr------------~Al  285 (331)
T KOG2494|consen  229 NTVEVCLRYTKGRCETEN--CKYFHAPAHDQA--SAKAAQPRPNS-SLAA-----PGA-LPPPKR------------PAL  285 (331)
T ss_pred             Ccchhccccccceechhc--ccccCchHHHHH--HHHHhhhccch-hhcC-----Ccc-CCCCCC------------CCC
Confidence            356789999999999999  999999999996  45666666555 2222     332 113332            345


Q ss_pred             cCCCcccceeehhhhhhhhhhhhhh
Q psy10364         90 PTDDVASAIWRISCLKNLKSFESRN  114 (129)
Q Consensus        90 P~~n~aS~~~~~svlh~~~~~~~~~  114 (129)
                      ||+||+|++|||+|+||+|+|.+-+
T Consensus       286 eK~ngasavfnp~v~~~qQa~~~~q  310 (331)
T KOG2494|consen  286 PKTNGASAAFNPTVAQWQQAFPGLQ  310 (331)
T ss_pred             CccCccchhcccchhhccccCchhh
Confidence            7999999999999999999998754

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.12  E-value=0.026  Score=31.79  Aligned_cols=22  Identities=27%  Similarity=0.759  Sum_probs=16.0

Q ss_pred             ceeehhhc-ccccC-CCCCceecCCC
Q psy10364         13 NYGTFWIL-GRCNR-EKPPCKYFHPP   36 (129)
Q Consensus        13 ~~c~d~iK-GRC~R-ekppCKYfHPP   36 (129)
                      ..|.+|++ |.|.+ ++  |+|.|++
T Consensus         4 ~~C~~f~~~g~C~~G~~--C~f~H~~   27 (27)
T PF00642_consen    4 KLCRFFMRTGTCPFGDK--CRFAHGE   27 (27)
T ss_dssp             SB-HHHHHTS--TTGGG--SSSBSSG
T ss_pred             ccChhhccCCccCCCCC--cCccCCC
Confidence            46888999 99999 66  9999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=89.05  E-value=0.24  Score=26.31  Aligned_cols=23  Identities=30%  Similarity=0.674  Sum_probs=19.1

Q ss_pred             ceeehhhcccccCCCCCceecCCC
Q psy10364         13 NYGTFWILGRCNREKPPCKYFHPP   36 (129)
Q Consensus        13 ~~c~d~iKGRC~RekppCKYfHPP   36 (129)
                      .+|-+|..|.|.+.. -|+|.|.+
T Consensus         5 ~~C~~~~~g~C~~g~-~C~~~H~~   27 (27)
T smart00356        5 ELCKFFKRGYCPYGD-RCKFAHPL   27 (27)
T ss_pred             CcCcCccCCCCCCCC-CcCCCCcC
Confidence            478899999999864 59999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
3d2n_A	83	Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And		5e-06
2rpp_A	89	Solution Structure Of Tandem Zinc Finger Domain 12		5e-04

>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2 Domain Length = 83

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
          GRC+RE   CKY HPP HLK QL INGRN+L
Sbjct: 52 GRCSREN--CKYLHPPPHLKTQLEINGRNNL 80

>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In Muscleblind-Like Protein 2 Length = 89

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 19 ILGRCNREKPPCKYFHPPQHLKDQLLIN 46
          + GRC+RE   CKY HPP HLK QL IN
Sbjct: 58 LKGRCSREN--CKYLHPPTHLKTQLEIN 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	3e-10
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	3e-07
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	7e-05
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 52.0 bits (124), Expect = 3e-10
 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALK 54
            + GRC+R    CKY HPP HLK QL INGRN+L  +
Sbjct: 48 DSLKGRCSR--ENCKYLHPPPHLKTQLEINGRNNLIQQ 83

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLLING 47
            + GRC+R    CKY HPP HLK QL IN 
Sbjct: 56 DSLKGRCSR--ENCKYLHPPTHLKTQLEINS 84

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 37.7 bits (87), Expect = 7e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 16 TFWILGRCNREKPPCKYFHPPQHLKDQ 42
            +I GRC+R    CKYFHPP HL+ +
Sbjct: 46 MDYIKGRCSR--EKCKYFHPPAHLQAK 70

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 38.3 bits (88), Expect = 8e-05
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLL 44
           +I GRC REK  CKYFHPP HL+ ++ 
Sbjct: 61 DYIKGRCMREK--CKYFHPPAHLQAKIK 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 66/137 (48%)

Query: 9   LSTLNYGTFWI-LGRCNREK----------------------PPCKYFHPPQHLKDQL-- 43
              +++  FW+ L  CN  +                                 ++ +L  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 44  LINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASA-IWR-- 100
           L+  + +   +N LL                            +L    +V +A  W   
Sbjct: 237 LLKSKPY---ENCLL----------------------------VL---LNVQNAKAWNAF 262

Query: 101 -ISCLKNLKSFESRNKE 116
            +SC K L    +R K+
Sbjct: 263 NLSC-KIL--LTTRFKQ 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	99.56
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	99.56
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.26
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.94
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.51
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.35
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	96.54
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.25
2rhk_C	72	Cleavage and polyadenylation specificity factor su	95.25
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	94.25
2rhk_C	72	Cleavage and polyadenylation specificity factor su	94.23
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	94.02
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	89.62
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	86.02
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	83.2
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	81.59

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=99.56  E-value=5.2e-16  Score=108.28  Aligned_cols=38  Identities=47%  Similarity=0.763  Sum_probs=36.6

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhhHHHHHhhhhhh
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNH   50 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HLk~qL~ingrnh   50 (129)
                      ...+|+||+||+|+|++  |+|+|||.|||+|++|||||+
T Consensus        50 ~~~vC~dflkG~C~r~~--Cky~H~~~hl~~~~~i~g~~~   87 (89)
T 2rpp_A           50 RVIACFDSLKGRCSREN--CKYLHPPTHLKTQLEINSGPS   87 (89)
T ss_dssp             BEEBCHHHHHTCCCCTT--CCSBCCCHHHHHHHHHCSCCC
T ss_pred             ceeeehhhhhCcCCCCC--cceecCHHHHHHHHHhcCCCC
Confidence            57999999999999998  999999999999999999997

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=99.56  E-value=7.1e-16  Score=105.91  Aligned_cols=42  Identities=52%  Similarity=0.856  Sum_probs=36.6

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhhHHHHHhhhhhhhHHH
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALK   54 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HLk~qL~ingrnh~a~k   54 (129)
                      ...+|+|||||+|.|++  |+|+|||.||+++++|+|++++++|
T Consensus        42 ~~~vC~dflkG~C~r~~--C~y~H~~~~l~~~~~i~g~~~~~~~   83 (83)
T 3d2n_A           42 RVIACFDSLKGRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQ   83 (83)
T ss_dssp             EEECCHHHHTTCCCCSS--CSSCCCCHHHHHHHHHHTTCC----
T ss_pred             ceeehhHhhhccccCCC--cceeCChHHHHHHHhcCCCCCcCCC
Confidence            47899999999999998  9999999999999999999999864

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.6e-13  Score=95.19  Aligned_cols=43  Identities=47%  Similarity=0.825  Sum_probs=36.9

Q ss_pred             cccceeehhhcccccCCCCCceecCCChhhHHHHHhhhhhhhHHHHH
Q psy10364         10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA   56 (129)
Q Consensus        10 ~~~~~c~d~iKGRC~RekppCKYfHPP~HLk~qL~ingrnh~a~kna   56 (129)
                      ....+|+|||||+|.|++  |+|+|+|.|||++++|.  +++++++|
T Consensus        54 ~~~~vC~~flkG~C~r~~--C~y~H~~~~l~~~~~~~--~~~~~~~~   96 (98)
T 2e5s_A           54 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKIKAA--QHQANQAA   96 (98)
T ss_dssp             CEEEBCHHHHHTCCCCTT--CCSBCCCHHHHHHHHHH--HSCCCCCC
T ss_pred             CccccchhhccCCCCCCC--cCccCChHHHHHHHHHH--HHHHhHhh
Confidence            457899999999999998  99999999999998876  55666554

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.94  E-value=1.5e-10  Score=75.72  Aligned_cols=30  Identities=57%  Similarity=1.121  Sum_probs=27.3

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhhHHH
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHLKDQ   42 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HLk~q   42 (129)
                      ...+|.|||||+|+|++  |+|+|+|.|||++
T Consensus        41 ~~~vC~~flkG~C~r~~--C~y~H~~~~L~~~   70 (70)
T 3d2q_A           41 TVTVCMDYIKGRCSREK--CKYFHPPAHLQAK   70 (70)
T ss_dssp             EEEBCHHHHTTCCCCTT--CCSBCCCHHHHC-
T ss_pred             cceeccccCcCCCCCCC--cCeeCCHHHHhcC
Confidence            46899999999999998  9999999999974

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.51  E-value=3.1e-05  Score=52.87  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=25.5

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhh
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHL   39 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HL   39 (129)
                      .+.||-||++|+|+|..+.|+|.|||.++
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~   36 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSC   36 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTC
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCccc
Confidence            56899999999999995559999999874

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.35  E-value=4.8e-05  Score=52.79  Aligned_cols=30  Identities=33%  Similarity=0.713  Sum_probs=26.4

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhhH
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHLK   40 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HLk   40 (129)
                      .+.||-||++|+|+|..+.|+|.|||..+.
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~   45 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQ   45 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCSSSC
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCcccc
Confidence            477999999999999966699999999853

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=96.54  E-value=0.00081  Score=43.61  Aligned_cols=29  Identities=28%  Similarity=0.615  Sum_probs=24.9

Q ss_pred             ccceeehhhcccccCCCCCceecCCChhh
Q psy10364         11 TLNYGTFWILGRCNREKPPCKYFHPPQHL   39 (129)
Q Consensus        11 ~~~~c~d~iKGRC~RekppCKYfHPP~HL   39 (129)
                      .+.||-||++|.|+|....|+|.||+..+
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~   33 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADST   33 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTS
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccc
Confidence            56799999999999995459999999754

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.25  E-value=0.00067  Score=47.22  Aligned_cols=30  Identities=23%  Similarity=0.564  Sum_probs=25.2

Q ss_pred             cccceeehhhcccccCCCCCceecCCChhh
Q psy10364         10 STLNYGTFWILGRCNREKPPCKYFHPPQHL   39 (129)
Q Consensus        10 ~~~~~c~d~iKGRC~RekppCKYfHPP~HL   39 (129)
                      ..+.||-||++|+|+|....|+|.|||..+
T Consensus        18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~   47 (98)
T 2e5s_A           18 DKLEVCREFQRGNCARGETDCRFAHPADST   47 (98)
T ss_dssp             SEEEBCSHHHHTCCSSHHHHCSSBCCSSCC
T ss_pred             hhhhhhHHHhcCcCCCCCCCCCCcCCchhc
Confidence            357799999999999984339999999765

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=95.25  E-value=0.0047  Score=40.55  Aligned_cols=28  Identities=21%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             ccceeehhhc-ccccCCCCCceecCCChhhH
Q psy10364         11 TLNYGTFWIL-GRCNREKPPCKYFHPPQHLK   40 (129)
Q Consensus        11 ~~~~c~d~iK-GRC~RekppCKYfHPP~HLk   40 (129)
                      ...+|.+|++ |.|.++.  |+|.|.....|
T Consensus        43 ~~~~C~~f~~~G~C~~~~--C~y~H~~p~~k   71 (72)
T 2rhk_C           43 KMSECYFYSKFGECSNKE--CPFLHIDPESK   71 (72)
T ss_dssp             SCCBCHHHHHHSCCSBTT--CCSBCCCCC--
T ss_pred             cCCcccccCCCCCCCCCC--eeccCCCcccc
Confidence            3457888888 8888866  88888766543

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.25  E-value=0.01  Score=38.84  Aligned_cols=26  Identities=19%  Similarity=0.557  Sum_probs=18.5

Q ss_pred             cceeehhhc-ccccCCCCCceecCCChhh
Q psy10364         12 LNYGTFWIL-GRCNREKPPCKYFHPPQHL   39 (129)
Q Consensus        12 ~~~c~d~iK-GRC~RekppCKYfHPP~HL   39 (129)
                      ..+|.+|++ |.|.++.  |+|.|.+...
T Consensus        38 ~~~C~~f~~~G~C~~~~--C~f~H~~~~~   64 (77)
T 2d9n_A           38 MPECYFYSKFGECSNKE--CPFLHIDPES   64 (77)
T ss_dssp             SCBCHHHHHTCCCCCSS--CSSBCCCTTS
T ss_pred             CCCCcccCCCCccCCCC--eeccCCCccc
Confidence            346778888 8888666  8888876544

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=94.23  E-value=0.01  Score=38.89  Aligned_cols=25  Identities=20%  Similarity=0.733  Sum_probs=21.6

Q ss_pred             ccceeehhhcccccC-CCCCceecCCCh
Q psy10364         11 TLNYGTFWILGRCNR-EKPPCKYFHPPQ   37 (129)
Q Consensus        11 ~~~~c~d~iKGRC~R-ekppCKYfHPP~   37 (129)
                      ...+|-+|++|.|.+ |+  |+|.|++.
T Consensus        15 k~~vCk~fl~G~C~~G~~--C~fsH~~~   40 (72)
T 2rhk_C           15 KTVVCKHWLRGLCKKGDQ--CEFLHEYD   40 (72)
T ss_dssp             CCSBCHHHHTTCCCCGGG--SSSBCSCC
T ss_pred             cCeeCHHHhcCCCCCCCC--CCCccccc
Confidence            346899999999999 78  99999963

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.02  E-value=0.016  Score=37.91  Aligned_cols=24  Identities=21%  Similarity=0.762  Sum_probs=21.2

Q ss_pred             cceeehhhcccccC-CCCCceecCCCh
Q psy10364         12 LNYGTFWILGRCNR-EKPPCKYFHPPQ   37 (129)
Q Consensus        12 ~~~c~d~iKGRC~R-ekppCKYfHPP~   37 (129)
                      ..+|-+|++|+|.+ |+  |+|.|.+.
T Consensus        10 ~~~C~~fl~G~C~~G~~--C~fsH~~~   34 (77)
T 2d9n_A           10 TVVCKHWLRGLCKKGDQ--CEFLHEYD   34 (77)
T ss_dssp             TSBCHHHHTTCCSCTTS--SSSBCSCC
T ss_pred             ceeCHhHccCcCCCCCC--CCCccccc
Confidence            45899999999999 77  99999875

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=89.62  E-value=0.19  Score=34.53  Aligned_cols=29  Identities=17%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             cceeehhh-cccccC-CCCCceecCCChhhHHH
Q psy10364         12 LNYGTFWI-LGRCNR-EKPPCKYFHPPQHLKDQ   42 (129)
Q Consensus        12 ~~~c~d~i-KGRC~R-ekppCKYfHPP~HLk~q   42 (129)
                      ..+|.+|+ +|.|.+ +.  |+|.|+|...+.+
T Consensus        36 ~~~C~~f~~~G~C~~G~~--C~f~H~~~~~~~~   66 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDD--CMFSHDPLTEETR   66 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTT--CSSBCCCCCHHHH
T ss_pred             CCcCcCcccCCcCCCCCC--CcccCCCCcccch
Confidence            35688885 899998 77  9999998765543

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=86.02  E-value=0.26  Score=33.84  Aligned_cols=23  Identities=35%  Similarity=0.795  Sum_probs=19.2

Q ss_pred             cceeehhhcccccCCCCCceecCC
Q psy10364         12 LNYGTFWILGRCNREKPPCKYFHP   35 (129)
Q Consensus        12 ~~~c~d~iKGRC~RekppCKYfHP   35 (129)
                      -.+|-+|++|.|.+-. .|+|.|.
T Consensus        13 ~~lC~~f~~G~C~~G~-~C~f~H~   35 (98)
T 2cqe_A           13 RELCKFYITGFCARAE-NCPYMHG   35 (98)
T ss_dssp             CSBCTTTTTTCCSCST-TCSSBSS
T ss_pred             CccCcccccCcCCCCC-CCCCCCC
Confidence            4579999999999742 3999998

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=83.20  E-value=0.25  Score=38.49  Aligned_cols=22  Identities=36%  Similarity=0.801  Sum_probs=19.4

Q ss_pred             cceeehhhcccccC-CCCCceecCC
Q psy10364         12 LNYGTFWILGRCNR-EKPPCKYFHP   35 (129)
Q Consensus        12 ~~~c~d~iKGRC~R-ekppCKYfHP   35 (129)
                      -.+|..|.||-|.| +.  |.|+|-
T Consensus        70 ~~~C~ffakG~C~~G~~--C~y~H~   92 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPK--CEYLHH   92 (240)
T ss_dssp             CSBCHHHHTTCCSCGGG--CSSBBS
T ss_pred             CeEcCccccCCCCCCCC--CCccCC
Confidence            45899999999999 66  999995

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=81.59  E-value=0.59  Score=29.34  Aligned_cols=27  Identities=26%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             cceeehhh-cccccC-CCCCceecCCChhhH
Q psy10364         12 LNYGTFWI-LGRCNR-EKPPCKYFHPPQHLK   40 (129)
Q Consensus        12 ~~~c~d~i-KGRC~R-ekppCKYfHPP~HLk   40 (129)
                      ..+|-.|+ .|.|.+ ++  |+|.|...-|+
T Consensus        12 t~~C~~f~~~G~C~~G~~--C~f~H~~~e~~   40 (77)
T 1m9o_A           12 TELCRTYSESGRCRYGAK--CQFAHGLGELR   40 (77)
T ss_dssp             SCCCSGGGGTSCCTTTTT--CSSCSSSCCGG
T ss_pred             chhCHHhhhCCCcCCCCC--ccCCCCChhhc
Confidence            35788886 899996 67  99999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	91.42

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.031  Score=31.70  Aligned_cols=19  Identities=47%  Similarity=1.085  Sum_probs=16.8

Q ss_pred             eeehhhcccccC-CCCCceecC
Q psy10364         14 YGTFWILGRCNR-EKPPCKYFH   34 (129)
Q Consensus        14 ~c~d~iKGRC~R-ekppCKYfH   34 (129)
                      .|-+||+|-|+| |+  |-|.|
T Consensus         8 lCKfYvqGyCtrgen--C~ymH   27 (29)
T d2cqea2           8 LCKFYITGFCARAEN--CPYMH   27 (29)
T ss_dssp             BCTTTTTTCCSCSTT--CSSBS
T ss_pred             hhhhheeeeecCCcC--ccccc
Confidence            688999999998 55  99998