Psyllid ID: psy10366

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MSYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSEDTMKNLRKTFAGIFGDM
ccccccccHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccEEEEEccHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccc
cccccccccHHHHHHHHHccccEEccHHHHHHcccHHHHHHHHHHHHHHHccccccEcccEEEccHHHHccEEEEEccccccccEEEEccHHHHHHHHHHHHHHcccEEEEEcccEEEEEEEEEEccEEEEEEEEEcccccccccccEEEEEEcccHHHHHHHHHHccHHHcccEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccc
MSYVIKQDHKnlllgfniggipsintlqgvynfqdkpWVFAHLLQLQRKlgkenfplidityypnfkemYPVVFKIGhahsgfgkvrvesnqdfqDMAGVVAVANTycttepyidskfDVHVQKIGSNYKAFQrksisgnwktntgsamleqipmtdhYKLWIDEVAELFggldicaleiivgkdgkehIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVsvlvppdiestIEVRKVEktyipndgkehiIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSstmssmsqpsaaqqranfgrqssqqsvtstagqigedsEDTMKNLRKTFAGIFGDM
MSYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKafqrksisgnWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKmqvsvlvppdiestievrkvektyipndgkehiIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANfgrqssqqsvtstagqigedsedtmKNLRKTFAGIFGDM
MSYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIqkmqsstmssmsqpsaaqqraNFGRQSSQQSVTSTAGQIGEDSEDTMKNLRKTFAGIFGDM
***VIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSL********RRFIVDLVI*************************************************************
*******DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRK*********************DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI**************************************************************************************************************NLRKTFAGIFGDM
MSYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM***************************************SEDTMKNLRKTFAGIFGDM
*****KQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV**********************KEHIIEVNDS*****************************************************************D***NLRKTFAGIFGD*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSEDTMKNLRKTFAGIFGDM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
O88935 706 Synapsin-1 OS=Mus musculu yes N/A 0.735 0.354 0.535 1e-83
P17600 705 Synapsin-1 OS=Homo sapien yes N/A 0.626 0.302 0.619 2e-83
P09951 704 Synapsin-1 OS=Rattus norv yes N/A 0.626 0.302 0.619 3e-83
P17599 706 Synapsin-1 OS=Bos taurus yes N/A 0.626 0.301 0.614 4e-83
Q24546 1025 Synapsin OS=Drosophila me yes N/A 0.967 0.320 0.442 4e-81
Q92777582 Synapsin-2 OS=Homo sapien no N/A 0.629 0.367 0.616 5e-81
Q63537586 Synapsin-2 OS=Rattus norv no N/A 0.629 0.365 0.607 1e-80
Q64332586 Synapsin-2 OS=Mus musculu no N/A 0.629 0.365 0.607 2e-80
O14994580 Synapsin-3 OS=Homo sapien no N/A 0.644 0.377 0.549 3e-77
Q8JZP2579 Synapsin-3 OS=Mus musculu no N/A 0.661 0.388 0.536 4e-77
>sp|O88935|SYN1_MOUSE Synapsin-1 OS=Mus musculus GN=Syn1 PE=1 SV=2 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 193/267 (72%), Gaps = 17/267 (6%)

Query: 8   DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
           D+++L++G    GIPS+N+L  VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 197 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 256

Query: 68  EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
           EM     YPVV K+GHAHSG GKV+V++  DFQD+A VVA+  TY T EP+ID+K+DV V
Sbjct: 257 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 316

Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
           QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D  +E+FGGLDICA+E + 
Sbjct: 317 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 376

Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKT 242
           GKDG++HIIEV  S++ L+G+ Q+ED++ IV+LV+ KM  ++            R+ ++ 
Sbjct: 377 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL-----------PRQPQRD 425

Query: 243 YIPNDGKEHIIEVNDSALSLMGETQEE 269
             P  G  H    +  AL+L  +T ++
Sbjct: 426 ASPGRG-SHSQSSSPGALTLGRQTSQQ 451
Neuronal phosphoprotein that coats synaptic vesicles, binds to the cytoskeleton, and is believed to function in the regulation of neurotransmitter release. Regulation of neurotransmitter release. The complex formed with NOS1 and CAPON proteins is necessary for specific nitric-oxide functions at a presynaptic level.
Mus musculus (taxid: 10090)
>sp|P17600|SYN1_HUMAN Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3 Back     alignment and function description
>sp|P09951|SYN1_RAT Synapsin-1 OS=Rattus norvegicus GN=Syn1 PE=1 SV=3 Back     alignment and function description
>sp|P17599|SYN1_BOVIN Synapsin-1 OS=Bos taurus GN=SYN1 PE=1 SV=2 Back     alignment and function description
>sp|Q24546|SYN_DROME Synapsin OS=Drosophila melanogaster GN=Syn PE=1 SV=2 Back     alignment and function description
>sp|Q92777|SYN2_HUMAN Synapsin-2 OS=Homo sapiens GN=SYN2 PE=1 SV=3 Back     alignment and function description
>sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1 SV=1 Back     alignment and function description
>sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2 Back     alignment and function description
>sp|O14994|SYN3_HUMAN Synapsin-3 OS=Homo sapiens GN=SYN3 PE=1 SV=2 Back     alignment and function description
>sp|Q8JZP2|SYN3_MOUSE Synapsin-3 OS=Mus musculus GN=Syn3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
242016069 541 synapsin, putative [Pediculus humanus co 0.961 0.604 0.550 1e-108
380029120 622 PREDICTED: synapsin-like [Apis florea] 0.955 0.522 0.535 1e-102
350416608 745 PREDICTED: synapsin-like [Bombus impatie 0.95 0.433 0.540 1e-102
383851597 633 PREDICTED: synapsin-like [Megachile rotu 0.952 0.511 0.539 1e-101
328781845 549 PREDICTED: synapsin [Apis mellifera] 0.955 0.591 0.533 1e-101
189241862 560 PREDICTED: similar to Synapsin CG3985-PE 0.938 0.569 0.556 3e-99
270015670 569 hypothetical protein TcasGA2_TC002264 [T 0.938 0.560 0.556 4e-99
193669078 505 PREDICTED: synapsin-like [Acyrthosiphon 0.888 0.598 0.502 1e-93
357616643 692 hypothetical protein KGM_17479 [Danaus p 0.658 0.323 0.658 4e-92
253509559 474 synapsin long isoform [Branchiostoma flo 0.914 0.656 0.483 1e-87
>gi|242016069|ref|XP_002428658.1| synapsin, putative [Pediculus humanus corporis] gi|212513329|gb|EEB15920.1| synapsin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/369 (55%), Positives = 246/369 (66%), Gaps = 42/369 (11%)

Query: 7   QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
           +DHKNLLLGF  GG+PSIN+LQ +Y FQDKPW+F+HLLQ+QR+LGKENFPLI+ T+YPN+
Sbjct: 180 EDHKNLLLGFEFGGVPSINSLQSIYGFQDKPWIFSHLLQIQRRLGKENFPLIEQTFYPNY 239

Query: 67  KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
           KEM     +PVV KIGHAH G GKV+V++N DFQDM+ VVAV  +Y T EPYIDSK+D+H
Sbjct: 240 KEMLTCTRFPVVVKIGHAHGGLGKVKVDNNNDFQDMSSVVAVTGSYATAEPYIDSKYDIH 299

Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
           VQKIG+NYKA  RKSISGNWKTNTGSAMLEQI M + YK ++DEV+ELFGGLDICALE++
Sbjct: 300 VQKIGTNYKALMRKSISGNWKTNTGSAMLEQIQMPERYKNYVDEVSELFGGLDICALEMV 359

Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV-PPDIESTI------ 234
           VGKDG+E+IIEVNDSAL+LMG++QEEDRR I DLV+QKMQ+      P + S +      
Sbjct: 360 VGKDGREYIIEVNDSALTLMGDSQEEDRRHIADLVVQKMQIQCKPGGPTVGSGMTKTASR 419

Query: 235 -----------------------EVRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDR 271
                                       E  Y         +   DS  ++  + Q    
Sbjct: 420 SSVSSSVGGLSSPTEDPQRSFVDPALPTEHGYTTQPAHPPTLPRRDSQGTIYQQKQIFSY 479

Query: 272 RFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSEDTMKNLRK 331
            F  + V   +     S  S  S+   RA  GRQSSQ  +T       EDSEDTMKNLRK
Sbjct: 480 HFFFNSVNLLLLLLLASQSSVTSSTGPRAPLGRQSSQTQLT-------EDSEDTMKNLRK 532

Query: 332 TFAGIFGDM 340
           TFAGIFGDM
Sbjct: 533 TFAGIFGDM 541

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380029120|ref|XP_003698230.1| PREDICTED: synapsin-like [Apis florea] Back     alignment and taxonomy information
>gi|350416608|ref|XP_003491015.1| PREDICTED: synapsin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383851597|ref|XP_003701318.1| PREDICTED: synapsin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328781845|ref|XP_624128.2| PREDICTED: synapsin [Apis mellifera] Back     alignment and taxonomy information
>gi|189241862|ref|XP_971243.2| PREDICTED: similar to Synapsin CG3985-PE [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270015670|gb|EFA12118.1| hypothetical protein TcasGA2_TC002264 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193669078|ref|XP_001945276.1| PREDICTED: synapsin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357616643|gb|EHJ70300.1| hypothetical protein KGM_17479 [Danaus plexippus] Back     alignment and taxonomy information
>gi|253509559|gb|ACT32024.1| synapsin long isoform [Branchiostoma floridae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
FB|FBgn0004575 1025 Syn "Synapsin" [Drosophila mel 0.629 0.208 0.565 1.9e-78
UNIPROTKB|P17600 705 SYN1 "Synapsin-1" [Homo sapien 0.626 0.302 0.619 5.9e-78
UNIPROTKB|B7TY10 712 SYN1 "Synapsin Ia" [Sus scrofa 0.626 0.299 0.619 5.9e-78
RGD|3797 704 Syn1 "synapsin I" [Rattus norv 0.626 0.302 0.619 5.9e-78
UNIPROTKB|F1M8P9 553 Syn1 "Synapsin-1" [Rattus norv 0.626 0.385 0.619 5.9e-78
UNIPROTKB|P09951 704 Syn1 "Synapsin-1" [Rattus norv 0.626 0.302 0.619 5.9e-78
UNIPROTKB|P17599 706 SYN1 "Synapsin-1" [Bos taurus 0.626 0.301 0.614 1.2e-77
UNIPROTKB|F5H7H8514 SYN2 "Synapsin-2" [Homo sapien 0.629 0.416 0.616 3.2e-77
UNIPROTKB|Q92777582 SYN2 "Synapsin-2" [Homo sapien 0.629 0.367 0.616 3.2e-77
UNIPROTKB|F1P669451 SYN2 "Uncharacterized protein" 0.629 0.474 0.611 6.6e-77
FB|FBgn0004575 Syn "Synapsin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 703 (252.5 bits), Expect = 1.9e-78, Sum P(2) = 1.9e-78
 Identities = 126/223 (56%), Positives = 168/223 (75%)

Query:     8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
             D+++ +LG   GG+PSIN+L  +Y FQDKPWVF+HLLQLQR+LG++ FPLI+ T++PN +
Sbjct:   215 DYRSTILGLKYGGVPSINSLHSIYQFQDKPWVFSHLLQLQRRLGRDGFPLIEQTFFPNPR 274

Query:    68 EMY-----PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANT----YCTTEPYIDSKF 118
             +++     P V K GH H G    R+E+    QD AG+V+ A      YCT EPYID+KF
Sbjct:   275 DLFQFTKFPSVLKAGHCHGGVATARLENQSALQDAAGLVSGAGNDSHCYCTIEPYIDAKF 334

Query:   119 DVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICAL 178
              VH+QKIG+NYKAF RKSI+GNWKTN GSAMLEQI +T+ YK W+DE++ELFGG+++C L
Sbjct:   335 SVHIQKIGNNYKAFMRKSITGNWKTNQGSAMLEQITLTEKYKSWVDEISELFGGMEVCGL 394

Query:   179 EIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221
              ++V KDG+E+II   DS  +L+G+TQEEDRR I DLV  +MQ
Sbjct:   395 SVVVAKDGREYIISACDSTFALIGDTQEEDRRQIADLVSGRMQ 437
GO:0043195 "terminal bouton" evidence=IDA
GO:0008021 "synaptic vesicle" evidence=ISS
GO:0007269 "neurotransmitter secretion" evidence=ISS
GO:0016079 "synaptic vesicle exocytosis" evidence=ISS
GO:0045202 "synapse" evidence=NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0007613 "memory" evidence=IMP
GO:0048149 "behavioral response to ethanol" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0008355 "olfactory learning" evidence=IMP
GO:0008049 "male courtship behavior" evidence=IMP
GO:0071632 "optomotor response" evidence=IMP
GO:0008306 "associative learning" evidence=IMP
UNIPROTKB|P17600 SYN1 "Synapsin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7TY10 SYN1 "Synapsin Ia" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|3797 Syn1 "synapsin I" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M8P9 Syn1 "Synapsin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P09951 Syn1 "Synapsin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P17599 SYN1 "Synapsin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7H8 SYN2 "Synapsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q92777 SYN2 "Synapsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P669 SYN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P17600SYN1_HUMANNo assigned EC number0.61920.62640.3021yesN/A
O88935SYN1_MOUSENo assigned EC number0.53550.73520.3541yesN/A
P17599SYN1_BOVINNo assigned EC number0.61460.62640.3016yesN/A
P09951SYN1_RATNo assigned EC number0.61920.62640.3025yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
pfam02750203 pfam02750, Synapsin_C, Synapsin, ATP binding domai 1e-113
pfam02750203 pfam02750, Synapsin_C, Synapsin, ATP binding domai 7e-11
TIGR00768277 TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri 7e-04
COG0189318 COG0189, RimK, Glutathione synthase/Ribosomal prot 0.001
>gnl|CDD|111626 pfam02750, Synapsin_C, Synapsin, ATP binding domain Back     alignment and domain information 
 Score =  328 bits (841), Expect = e-113
 Identities = 131/201 (65%), Positives = 165/201 (82%), Gaps = 5/201 (2%)

Query: 25  NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79
           N+L  +YNF DKPWVFA L+Q+Q+KLG E FPLI+ TYYPN KEM     +PVV KIGHA
Sbjct: 1   NSLHSIYNFCDKPWVFAQLIQIQKKLGAEKFPLIEQTYYPNHKEMLTTPTFPVVVKIGHA 60

Query: 80  HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG 139
           HSG GKV+V+++ DFQD+A VVA+  TY TTEP+IDSK+D+ VQKIG+NYKA+ R SISG
Sbjct: 61  HSGMGKVKVDNHHDFQDIASVVALTKTYATTEPFIDSKYDIRVQKIGNNYKAYMRTSISG 120

Query: 140 NWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALS 199
           NWK NTGSAMLEQI M++ YKLW+D  +E+FGGLDICA+E + GKDG+++IIEV DS++ 
Sbjct: 121 NWKANTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVEALHGKDGRDYIIEVMDSSMP 180

Query: 200 LMGETQEEDRRFIVDLVIQKM 220
           L+GE QEEDR+ I +LV+ KM
Sbjct: 181 LIGEHQEEDRQLIAELVVSKM 201

Ca dependent ATP binding in this ATP grasp fold. Function unknown. Length = 203
>gnl|CDD|111626 pfam02750, Synapsin_C, Synapsin, ATP binding domain Back     alignment and domain information
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
KOG3895|consensus488 100.0
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 100.0
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 100.0
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 100.0
PRK10446300 ribosomal protein S6 modification protein; Provisi 100.0
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 100.0
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 100.0
PLN02941328 inositol-tetrakisphosphate 1-kinase 100.0
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.98
PRK05246316 glutathione synthetase; Provisional 99.98
PRK12458338 glutathione synthetase; Provisional 99.97
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.95
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 99.94
PRK14016 727 cyanophycin synthetase; Provisional 99.92
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 99.9
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.9
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.89
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 99.87
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.85
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 99.84
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.84
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.82
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.81
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.81
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.8
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 99.78
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.77
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.75
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 99.74
PRK05586447 biotin carboxylase; Validated 99.74
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 99.73
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.71
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 99.7
PRK07178472 pyruvate carboxylase subunit A; Validated 99.7
PLN02948 577 phosphoribosylaminoimidazole carboxylase 99.69
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.68
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.68
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 99.68
PRK08462445 biotin carboxylase; Validated 99.67
PRK08654499 pyruvate carboxylase subunit A; Validated 99.66
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.66
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.66
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 99.65
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.63
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.62
PRK07206416 hypothetical protein; Provisional 99.62
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 99.62
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.61
PLN02257434 phosphoribosylamine--glycine ligase 99.61
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.6
PRK06849389 hypothetical protein; Provisional 99.6
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.58
PRK12999 1146 pyruvate carboxylase; Reviewed 99.58
PRK02186 887 argininosuccinate lyase; Provisional 99.57
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.54
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.53
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.52
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 99.51
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 99.5
PRK06524493 biotin carboxylase-like protein; Validated 99.5
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 99.49
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.49
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 99.47
PLN02735 1102 carbamoyl-phosphate synthase 99.44
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.41
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 99.41
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 99.4
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.4
PLN027351102 carbamoyl-phosphate synthase 99.4
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.37
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 99.34
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 99.31
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 99.3
KOG3895|consensus488 99.3
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 99.29
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 99.28
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.19
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 99.18
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 99.13
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 99.06
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 99.06
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 99.05
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 99.04
KOG0238|consensus 670 99.0
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 98.93
COG2232389 Predicted ATP-dependent carboligase related to bio 98.87
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 98.85
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 98.75
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 98.51
KOG1057|consensus 1018 98.5
KOG0369|consensus 1176 98.4
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 98.31
COG3919415 Predicted ATP-grasp enzyme [General function predi 98.16
PF14243130 DUF4343: Domain of unknown function (DUF4343) 98.15
KOG0368|consensus 2196 97.8
PF14305239 ATPgrasp_TupA: TupA-like ATPgrasp 97.64
KOG2157|consensus497 97.42
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 97.37
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 97.07
KOG0237|consensus 788 96.48
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 96.0
KOG0370|consensus1435 95.68
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 94.4
KOG2156|consensus662 94.11
PRK10507619 bifunctional glutathionylspermidine amidase/glutat 91.17
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 89.33
PHA02117397 glutathionylspermidine synthase domain-containing 87.93
COG2308488 Uncharacterized conserved protein [Function unknow 87.42
PRK14046392 malate--CoA ligase subunit beta; Provisional 83.2
KOG2158|consensus565 81.53
KOG0370|consensus 1435 81.13
>KOG3895|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.5e-64  Score=482.19  Aligned_cols=225  Identities=59%  Similarity=1.065  Sum_probs=220.1

Q ss_pred             CccccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEec
Q psy10366          2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKI   76 (340)
Q Consensus         2 ~~~~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp   76 (340)
                      +++.+||||.++++|.+.|+|.+||+.+++++.||+|+|++|..|.+++|.+.||++++||||++++|     ||||||.
T Consensus       167 ~mA~~~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~m~s~~tyPvVVkv  246 (488)
T KOG3895|consen  167 SMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKEMLSQPTYPVVVKV  246 (488)
T ss_pred             hhccccchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCchhhccCCCCcEEEEe
Confidence            68899999999999999999999999999999999999999999999999999999999999999988     9999999


Q ss_pred             CCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCC
Q psy10366         77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMT  156 (340)
Q Consensus        77 ~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~  156 (340)
                      +++|+|+|++||+|.++|+|+..++.+.+.|..+|+|||.+|||||++||.+|+||||++++||||||+|++++|++.++
T Consensus       247 ghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKaymRtsIsgnWKtNtGSamLEQIams  326 (488)
T KOG3895|consen  247 GHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWKTNTGSAMLEQIAMS  326 (488)
T ss_pred             cccccccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHHhhhhhccCcccCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCC
Q psy10366        157 DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV  226 (340)
Q Consensus       157 ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~  226 (340)
                      |++|.|++.|++.|||||||+||+|.+|||+.||+|||+|+||+++.++++|++.|+++|+.+|.+.+.+
T Consensus       327 eRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l~~  396 (488)
T KOG3895|consen  327 ERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLLTR  396 (488)
T ss_pred             HHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999876653

>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>KOG3895|consensus Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>KOG0238|consensus Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>KOG1057|consensus Back     alignment and domain information
>KOG0369|consensus Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>KOG0368|consensus Back     alignment and domain information
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>KOG0237|consensus Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>KOG0370|consensus Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2156|consensus Back     alignment and domain information
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PHA02117 glutathionylspermidine synthase domain-containing protein Back     alignment and domain information
>COG2308 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG0370|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1pk8_A422 Crystal Structure Of Rat Synapsin I C Domain Comple 1e-82
1pk8_A422 Crystal Structure Of Rat Synapsin I C Domain Comple 7e-04
1aux_A311 Structure Of The C Domain Of Synapsin Ia From Bovin 1e-82
1aux_A311 Structure Of The C Domain Of Synapsin Ia From Bovin 7e-04
1i7l_A309 Crystal Structure Analysis Of The Complex Of The C 3e-80
1i7l_A309 Crystal Structure Analysis Of The Complex Of The C 4e-04
1auv_A311 Structure Of The C Domain Of Synapsin Ia From Bovin 3e-78
2p0a_A344 The Crystal Structure Of Human Synapsin Iii (Syn3) 8e-77
2p0a_A344 The Crystal Structure Of Human Synapsin Iii (Syn3) 2e-04
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To Ca.Atp Length = 422 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 175/218 (80%), Gaps = 5/218 (2%)
Query: 8   DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
           D+++L++G    GIPS+N+L  VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 198 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 257
Query: 68  EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
           EM     YPVV K+GHAHSG GKV+V++  DFQD+A VVA+  TY T EP+ID+K+DV V
Sbjct: 258 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 317
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
           QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D  +E+FGGLDICA+E + 
Sbjct: 318 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 377
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
           GKDG++HIIEV  S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 378 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 415
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To Ca.Atp Length = 422 Back     alignment and structure
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain With Calcium Atp-Gamma-S Bound Length = 311 Back     alignment and structure
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain With Calcium Atp-Gamma-S Bound Length = 311 Back     alignment and structure
>pdb|1I7L|A Chain A, Crystal Structure Analysis Of The Complex Of The C Domain Of Synapsin Ii From Rat With Atp Length = 309 Back     alignment and structure
>pdb|1I7L|A Chain A, Crystal Structure Analysis Of The Complex Of The C Domain Of Synapsin Ii From Rat With Atp Length = 309 Back     alignment and structure
>pdb|1AUV|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain Length = 311 Back     alignment and structure
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In Complex With Amppnp Length = 344 Back     alignment and structure
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In Complex With Amppnp Length = 344 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 6e-88
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 8e-09
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 4e-83
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 2e-10
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 4e-78
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 2e-07
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 1e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309 Back     alignment and structure
 Score =  265 bits (679), Expect = 6e-88
 Identities = 133/220 (60%), Positives = 173/220 (78%), Gaps = 5/220 (2%)

Query: 7   QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
           +D ++L++G    G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN 
Sbjct: 85  EDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNH 144

Query: 67  KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
           +EM     +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+  TY T EP+ID+K+D+ 
Sbjct: 145 REMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 204

Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
           VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D  +E+FGGLDICA++ +
Sbjct: 205 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAV 264

Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221
            GKDGK++I EV D ++ L+GE Q EDR+ I DLVI KM 
Sbjct: 265 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMN 304
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309 Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344 Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 100.0
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 100.0
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 100.0
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 100.0
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 99.97
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 99.96
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.95
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 99.94
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.93
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 99.92
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.92
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.92
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.89
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.88
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.88
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.88
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.87
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.87
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.83
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.83
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.83
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.83
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.82
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.82
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 99.81
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.81
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 99.8
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.8
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.79
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.78
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.78
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 99.77
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.77
3ouz_A446 Biotin carboxylase; structural genomics, center fo 99.76
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.76
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.76
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 99.76
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 99.76
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.75
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 99.75
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 99.75
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.75
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.75
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.74
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 99.74
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 99.74
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.74
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 99.74
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.73
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.73
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.73
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.73
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.72
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.71
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 99.7
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 99.68
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.67
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 99.63
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 99.63
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.63
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.62
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 99.61
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.6
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 99.56
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.56
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 99.44
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 99.42
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.12
1wr2_A238 Hypothetical protein PH1789; structural genomics, 98.85
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 98.51
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 98.23
3n6x_A474 Putative glutathionylspermidine synthase; domain o 97.52
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 97.28
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 97.21
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 97.15
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 96.67
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 96.41
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 95.9
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 95.75
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
Probab=100.00  E-value=5.3e-60  Score=455.83  Aligned_cols=221  Identities=60%  Similarity=1.074  Sum_probs=207.8

Q ss_pred             ccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCC
Q psy10366          5 IKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA   79 (340)
Q Consensus         5 ~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~G   79 (340)
                      ..++||+++++||.+|+||+|+++||++|+||+|+|++++++|+++|+++||+||.+++++..++     ||+|+||++|
T Consensus        83 ~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~~~~~~g~PvVvK~~~G  162 (309)
T 1i7n_A           83 ENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHA  162 (309)
T ss_dssp             TTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSC
T ss_pred             ccchHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhhhhhccCCCEEEEeCCC
Confidence            56789999999999999999999999999999999999999999999777799999888765543     8999999999


Q ss_pred             CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHH
Q psy10366         80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHY  159 (340)
Q Consensus        80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~  159 (340)
                      |||+||+|++|+++++++++.+...+.++++||||+.|+||||+||||+++||||++.+++||||+++|+.+++++++++
T Consensus       163 s~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VvGg~v~a~~Rr~~~g~wrtN~~~~~~e~~~l~~e~  242 (309)
T 1i7n_A          163 HSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRY  242 (309)
T ss_dssp             STTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEESSCTTTSCSCCCSSEEEECCCHHH
T ss_pred             CceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEECCEEEEEEEEcCCCCCeecCCcceeeecCCCHHH
Confidence            99999999999999999999887778899999999999999999999999999999878999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366        160 KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL  225 (340)
Q Consensus       160 ~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~  225 (340)
                      ++||.+|+++++|+||||||+|++++|++||+|||+|++|+|+|++.+++.+||++|+++|++.+.
T Consensus       243 ~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~  308 (309)
T 1i7n_A          243 KLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS  308 (309)
T ss_dssp             HHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence            999999999997899999999999999999999999667999999999999999999999998774
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1i7na2206 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor 2e-44
d1i7na2206 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor 4e-08
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  149 bits (376), Expect = 2e-44
 Identities = 126/205 (61%), Positives = 161/205 (78%), Gaps = 5/205 (2%)

Query: 25  NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79
           N+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN +EM     +PVV KIGHA
Sbjct: 1   NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHA 60

Query: 80  HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG 139
           HSG GKV+VE++ DFQD+A VVA+  TY T EP+ID+K+D+ VQKIG+NYKA+ R SISG
Sbjct: 61  HSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISG 120

Query: 140 NWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALS 199
           NWKTNTGSAMLEQI M+D YKLW+D  +E+FGGLDICA++ + GKDGK++I EV D ++ 
Sbjct: 121 NWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMP 180

Query: 200 LMGETQEEDRRFIVDLVIQKMQVSV 224
           L+GE Q EDR+ I DLVI KM   +
Sbjct: 181 LIGEHQVEDRQLITDLVISKMNQLL 205
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 100.0
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 99.96
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 99.89
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.78
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.72
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.71
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 99.54
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 99.53
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.53
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.47
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.39
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.38
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.36
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.33
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.3
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.3
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.19
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 97.53
d1uc8a188 Lysine biosynthesis enzyme LysX, N-terminal domain 97.44
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 90.77
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 90.24
d2pbza2213 5-formaminoimidazole-4-carboxamide ribonucleotide 90.04
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 81.43
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-41  Score=304.22  Aligned_cols=200  Identities=63%  Similarity=1.108  Sum_probs=179.1

Q ss_pred             CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCCCcccceEEecChhhHHHHHH
Q psy10366         25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAG   99 (340)
Q Consensus        25 Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~   99 (340)
                      ||+++|++|.||+|+|++++++.++.+.+.+|++..++.+...+.     +|+||||.+|++|+||.+++|+++++.+.+
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~   80 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIAS   80 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeecccccchhHHhhhcCCceEEecCCCCCCCCeEEEeecchhhhHHH
Confidence            999999999999999999988888888777887766666554432     899999999999999999999999999988


Q ss_pred             HHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEe
Q psy10366        100 VVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALE  179 (340)
Q Consensus       100 ~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVD  179 (340)
                      .....+.++++||||+.++|+||+|+|++++++.|+...++||+|.+.+........++.++++.+++++++++++||||
T Consensus        81 ~~~~~~~~~~vqe~I~~~~dirv~vig~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvD  160 (206)
T d1i7na2          81 VVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVK  160 (206)
T ss_dssp             HHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEESSCTTTSCSCCCSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEE
T ss_pred             HHhhccCeEEEEEeecccceEEEEEEecceeEEEeeccccccccccccCccccccCChHHHHHHHHHhhhccccceeeEE
Confidence            88777788889999998899999999999998888777899999998665566677788889999999988899999999


Q ss_pred             EEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhc
Q psy10366        180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSV  224 (340)
Q Consensus       180 ll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~  224 (340)
                      ++.++||++||+|||++++|+|.+.+.++..+|||+|+++|++.+
T Consensus       161 ~~~~~dG~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~~l  205 (206)
T d1i7na2         161 AVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL  205 (206)
T ss_dssp             EEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEcCCCCEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998899999999999999999999999865
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure