Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 120
pfam05199 139
pfam05199, GMC_oxred_C, GMC oxidoreductase
8e-34 PRK02106 560
PRK02106, PRK02106, choline dehydrogenase; Validat
3e-27 COG2303 542
COG2303, BetA, Choline dehydrogenase and related f
4e-23 TIGR01810 532
TIGR01810, betA, choline dehydrogenase
6e-22 TIGR03970 487
TIGR03970, Rv0697, dehydrogenase, Rv0697 family
1e-14 PLN02785 587
PLN02785, PLN02785, Protein HOTHEAD
1e-04
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase
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Score = 113 bits (286), Expect = 8e-34
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 9 SIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLR 68
+ +L P+ SD+ + ++ + + H GTC+MG VVDP LR
Sbjct: 47 AALVELTPGPVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGAD-PDDGVVDPDLR 105
Query: 69 VYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKG 102
V+G+ LRV+DAS+ P P G+ Y + E+
Sbjct: 106 VHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 139
This domain found associated with pfam00732. Length = 139
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated
Back Show alignment and domain information
Score = 104 bits (261), Expect = 3e-27
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H TCKMG TD AVVDP RV+G++GLRV+DASIMP + G+ APT MI EK AD
Sbjct: 472 YHPSCTCKMG--TDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAAD 529
Query: 105 MIK 107
+I+
Sbjct: 530 LIR 532
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 92.5 bits (230), Expect = 4e-23
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 44 THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGA 103
+H GTC+MG + V DP LRV+G++ LRV+DAS+MP G + + E+ A
Sbjct: 472 AYHPMGTCRMG-SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAA 530
Query: 104 DMIKED 109
D I D
Sbjct: 531 DHILGD 536
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase
Back Show alignment and domain information
Score = 89.2 bits (221), Expect = 6e-22
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMGPA+D +VVDP RV+G++GLRV+DASIMP + G+ AP M+GEK AD+
Sbjct: 466 HPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525
Query: 106 IK 107
I+
Sbjct: 526 IR 527
Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family
Back Show alignment and domain information
Score = 68.3 bits (167), Expect = 1e-14
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CG+C+MG D AVVD R RV G++GL V+D SI+PV+P A M+ E+ A+
Sbjct: 426 HLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAERAAEF 485
Query: 106 I 106
+
Sbjct: 486 L 486
This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD
Back Show alignment and domain information
Score = 39.8 bits (93), Expect = 1e-04
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIG 99
H G C +G VVD +V G+ LRVID S PG + A M+G
Sbjct: 522 HYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
120
KOG1238|consensus 623
100.0 PF05199 144
GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078
99.97 TIGR01810 532
betA choline dehydrogenase. This enzyme is a membe
99.96 PRK02106 560
choline dehydrogenase; Validated
99.95 PLN02785 587
Protein HOTHEAD
99.94 COG2303 542
BetA Choline dehydrogenase and related flavoprotei
99.91 TIGR02462 544
pyranose_ox pyranose oxidase. Pyranose oxidase (al
99.8 COG1252 405
Ndh NADH dehydrogenase, FAD-containing subunit [En
93.5 TIGR03169 364
Nterm_to_SelD pyridine nucleotide-disulfide oxidor
92.26 PTZ00318 424
NADH dehydrogenase-like protein; Provisional
90.01 TIGR02734 502
crtI_fam phytoene desaturase. Phytoene is converte
81.82
>KOG1238|consensus
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Probab=100.00 E-value=6.2e-35 Score=250.17 Aligned_cols=113 Identities=56% Similarity=1.039 Sum_probs=108.7
Q ss_pred CCCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecC
Q psy10421 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDA 80 (120)
Q Consensus 1 ~~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDa 80 (120)
|++|++|+++..++...+.|+|+..+..+|++|+||+|..+.|.||++|||+||+..|+++|||+++||||++|||||||
T Consensus 507 l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDa 586 (623)
T KOG1238|consen 507 LSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDA 586 (623)
T ss_pred HHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeec
Confidence 46899999999999988899999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 81 SIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 81 Sv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
||||.+|++||++++||||||+|++|+++|...
T Consensus 587 SimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~ 619 (623)
T KOG1238|consen 587 SIMPESPSGNPNAPVMMIGEKAADMIKEEWLAN 619 (623)
T ss_pred cccCCCCCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998765
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]
Back Show alignment and domain information
Probab=99.97 E-value=8.3e-31 Score=185.06 Aligned_cols=77 Identities=39% Similarity=0.720 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHH
Q psy10421 25 LPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKG 102 (120)
Q Consensus 25 ~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~ 102 (120)
....++++|++|+++...+.+|++|||+||.+++. +|||++|||||++||||+|+|+||+.+++||++|+||+|+|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 68 ASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp STTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cccccchhhhhheeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 45678999999999999999999999999998764 999999999999999999999999999999999999999996
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
>TIGR01810 betA choline dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=1.3e-29 Score=213.37 Aligned_cols=103 Identities=42% Similarity=0.675 Sum_probs=87.7
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+.+...+. .|+ ....+|++|++|+|+...+.+|++||||||++++++||||+++||||++||||||+|
T Consensus 428 ~~~~~~~~~~~~~~---~p~---~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaS 501 (532)
T TIGR01810 428 LKQKALDPYRGGEI---SPG---PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDAS 501 (532)
T ss_pred HcCcchhhcccccc---CCC---CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeec
Confidence 34555665543332 243 235789999999999999999999999999855668999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
|||++|++||++|+||||||+|++|+++.
T Consensus 502 v~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 502 IMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998753
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
>PRK02106 choline dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.95 E-value=9.1e-29 Score=209.49 Aligned_cols=100 Identities=41% Similarity=0.615 Sum_probs=86.4
Q ss_pred CCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCC
Q psy10421 3 ETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASI 82 (120)
Q Consensus 3 ~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv 82 (120)
++++++.+...+. .|++ ...++++|++|+++...+.+|++||||||+ |++||||++|||||++||||+|+||
T Consensus 436 ~~~~~~~~~~~~~---~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv 507 (560)
T PRK02106 436 AQPALDPYRGREI---SPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASI 507 (560)
T ss_pred cChhhhhcccccc---CCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccc
Confidence 4455665544433 3542 347899999999999999999999999997 4479999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 83 MPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 83 ~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
||+.+++||++|+||+|||+|++|++++
T Consensus 508 ~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 508 MPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999876
>PLN02785 Protein HOTHEAD
Back Show alignment and domain information
Probab=99.94 E-value=4e-27 Score=202.02 Aligned_cols=79 Identities=29% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy10421 27 FGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMI 106 (120)
Q Consensus 27 ~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i 106 (120)
..+|++|++|+|+...+.||++|||+|| +|||+++||||++||||||+||||.+|++||++|+||||||+|++|
T Consensus 503 ~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~I 576 (587)
T PLN02785 503 TNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKI 576 (587)
T ss_pred CCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q psy10421 107 KEDWL 111 (120)
Q Consensus 107 ~~~~~ 111 (120)
++++.
T Consensus 577 l~~~~ 581 (587)
T PLN02785 577 LRERL 581 (587)
T ss_pred HHHhh
Confidence 98764
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.91 E-value=4e-25 Score=188.01 Aligned_cols=99 Identities=32% Similarity=0.509 Sum_probs=83.0
Q ss_pred CccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCC
Q psy10421 4 TEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIM 83 (120)
Q Consensus 4 t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~ 83 (120)
++.+..+...+. .|+ ....+++++..|++....+.+|++|||+||.++ ..+|+|++|||||++||||+|+|+|
T Consensus 438 ~~~~~~~~~~e~---~~~---~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp-~~~V~d~~lrv~g~~nL~VvDaSvm 510 (542)
T COG2303 438 QPALDARRKAEL---APG---PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDP-AAVVDDPYLRVHGLENLRVVDASVM 510 (542)
T ss_pred CccchhhHHHhh---cCC---CccccHHHHHHHHHhccCccccccccccCCCCc-hhhccccccccccCCCeEEeCcccC
Confidence 445555555443 354 346788899999999999999999999999532 2355559999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 84 PVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 84 P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|+++++||++|++|||+|+|++|+++
T Consensus 511 Pt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 511 PTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cCccCCCccHhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999984
>TIGR02462 pyranose_ox pyranose oxidase
Back Show alignment and domain information
Probab=99.80 E-value=9.7e-20 Score=155.68 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred cccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 43 QTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 43 ~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.++|++|||+||.++ .++|||+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++
T Consensus 477 ~~~H~~Gt~rMG~dp-~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 477 LALHLAGTTRIGFDE-QTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ccccCCCCeecCCCC-CCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 378999999999753 5799999999999999999999999999999999999999999999998764
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Back Show alignment and domain information
Probab=93.50 E-value=0.25 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=43.0
Q ss_pred CceecCCCeEeccCCcEEe-cCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q psy10421 60 TAVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTV-APTYMIGEKGADMIKEDWLPGYTPTFDF 120 (120)
Q Consensus 60 ~~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~-~t~~a~a~r~A~~i~~~~~~~~~~~~~~ 120 (120)
.=+||+++++.|.+++|++ |.+.++..=-..|+ --.+..|+.+|+.|.+.++-.+...|.|
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 3699999999999999999 99988875001122 2335567778888888887655555543
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein
Back Show alignment and domain information
Probab=92.26 E-value=0.47 Score=37.86 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=41.0
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTPTFD 119 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~~~~ 119 (120)
=.||..++..+.+|+|++ |.+.++..+........+.-|..+|+.|.+..+-...+.|+
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~ 319 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPLRPFR 319 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence 367888898899999999 78777655443333445667788888887776555444443
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Back Show alignment and domain information
Probab=90.01 E-value=1.1 Score=37.03 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=37.1
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
.||+.+|+.+++|+|++ |.+.++..+........+.-|..+|+.|.....-
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999988 8887764332223334566788888888877643
>TIGR02734 crtI_fam phytoene desaturase
Back Show alignment and domain information
Probab=81.82 E-value=5.4 Score=33.37 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=31.9
Q ss_pred EeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy10421 69 VYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTP 116 (120)
Q Consensus 69 V~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~ 116 (120)
...++|||.+.+|++|-.. ...++.=|..+|+.|+++.+..+.|
T Consensus 455 ~t~i~gLyl~G~~~~pG~G----v~g~~~sg~~~a~~il~~~~~~~~~ 498 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGAG----VPGVLGSAKATAKLMLGDLAPGPEP 498 (502)
T ss_pred CCCCCCEEEeCCCCCCCCC----HHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4579999999999988411 1234456778889999888776544
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 120
d1cf3a1 385
c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper
2e-21 d1kdga1 360
c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain
1e-18 d1gpea1 391
c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic
3e-16 d2f5va1 379
c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W
3e-14 d1gpea2 196
d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
6e-06 d1cf3a2 196
d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus
2e-05
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]
Score = 84.9 bits (209), Expect = 2e-21
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
G C M P + VVD RVYG+QGLRVID SI P H + Y + K +D
Sbjct: 317 DLPVGLCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISD 375
Query: 105 MIKEDW 110
I ED+
Sbjct: 376 AILEDY 381
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Score = 77.4 bits (189), Expect = 1e-18
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 42 MQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEK 101
+ G +G + ++AVVD ++V+G L ++DA I+P LP G+ E+
Sbjct: 290 QWINLPVGMTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQ 348
Query: 102 GADMI 106
A I
Sbjct: 349 AAAKI 353
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]
Score = 71.1 bits (173), Expect = 3e-16
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
VVD +VYG QGLRVID SI P H + Y + K AD I +D+
Sbjct: 338 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 387
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Score = 65.0 bits (157), Expect = 3e-14
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 33 WVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTV 92
+ L H+ G + V+ RV+G + L + +P G +
Sbjct: 300 PTNPPELLPSLGSHRMGFDEKE----DNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPT 355
Query: 93 APTYMIGEKGADMIKEDWLPG 113
+ K + IK+++ P
Sbjct: 356 LTAMSLAIKSCEYIKQNFTPS 376
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196
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class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]
Score = 40.9 bits (95), Expect = 6e-06
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50
++ + +PG + + W V H +
Sbjct: 150 LTSQGAMKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]
Score = 39.7 bits (92), Expect = 2e-05
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50
+S + Q+ IPG W + + +H GT
Sbjct: 150 ISNSGAMQTY---FAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 120
d2f5va1 379
Pyranose 2-oxidase {White-rot fungus (Peniophora s
99.8 d1cf3a1 385
Glucose oxidase {Aspergillus niger [TaxId: 5061]}
99.59 d1kdga1 360
Flavoprotein domain of flavocytochrome cellobiose
99.36 d1gpea1 391
Glucose oxidase {Penicillium amagasakiense [TaxId:
99.24 d1gpea2 196
Glucose oxidase {Penicillium amagasakiense [TaxId:
98.23 d1n4wa1 367
Cholesterol oxidase of GMC family {Streptomyces sp
98.19 d1cf3a2 196
Glucose oxidase {Aspergillus niger [TaxId: 5061]}
97.99 d3coxa1 370
Cholesterol oxidase of GMC family {Brevibacterium
97.96 d1ju2a2 170
Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI
97.62 d1kdga2 181
Flavoprotein domain of flavocytochrome cellobiose
92.99 d1ju2a1 351
Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI
85.12
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=99.80 E-value=3e-20 Score=141.46 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=59.6
Q ss_pred cccccCcccCCCCCC-CceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 45 HHQCGTCKMGPATDR-TAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 45 ~H~~GT~~Mg~~~d~-~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
.|..|+++||....+ ++|||+++||||++||||+|+||||+.+.+||++|++|||+|+|++|++.++..
T Consensus 307 ~~~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~ 376 (379)
T d2f5va1 307 LPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPS 376 (379)
T ss_dssp STTTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhhccC
Confidence 455555555543322 599999999999999999999999999999999999999999999999998765
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]
Probab=99.59 E-value=5.4e-16 Score=121.94 Aligned_cols=68 Identities=41% Similarity=0.616 Sum_probs=62.1
Q ss_pred ccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 44 THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 44 ~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
.-||.|+|.|..+ ...+|||+..+|+|++||||+|+||+|.++++|++.++|++|||+||.|+++|.+
T Consensus 316 ~dlP~g~~~~~~~-~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~ 383 (385)
T d1cf3a1 316 VDLPVGLCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYAS 383 (385)
T ss_dssp BCCCTTCTCBSCG-GGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCcchhccCCC-CcccccccccccccccCeEeecCcCCcccccCchhHHHHHHhhhhHHHHHHHHhh
Confidence 4467899999864 3479999999999999999999999999999999999999999999999999854
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=99.36 E-value=4.3e-13 Score=104.36 Aligned_cols=67 Identities=28% Similarity=0.455 Sum_probs=61.6
Q ss_pred cccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 43 QTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 43 ~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
...|+.|++.|+... .++|||++++|+|..||||+|+|+||..++.||+.++|++||++|++|++..
T Consensus 291 ~~~~p~g~~~~~~~~-~~~v~~~~~~~~g~~~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~ 357 (360)
T d1kdga1 291 WINLPVGMTTIGSSP-QSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALA 357 (360)
T ss_dssp CBCCCTTTTCBCSCT-TTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHST
T ss_pred eecccceeeecCCCC-cccEECccceeeccCCceEEeeecccccCCCCCCcchhHHHHHHHHHHhhcc
Confidence 357999999999754 4699999999999999999999999999999999999999999999998753
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]
Probab=99.24 E-value=3.6e-12 Score=100.32 Aligned_cols=64 Identities=41% Similarity=0.580 Sum_probs=58.6
Q ss_pred cccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 47 QCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 47 ~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
|.|.++|-.+. ..+|||.++||+|++||||+|+|++|..+++|++++++++||++|+.|++++.
T Consensus 325 P~Gvg~nl~dh-~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (391)
T d1gpea1 325 PVGICSMMSRE-LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 388 (391)
T ss_dssp CTTCTCBSCGG-GTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccC-ccceeeeeeeecCCCChhhhccccCccccccchhhhhhhhHhhhhHHHHHHhh
Confidence 56999997643 35899999999999999999999999999999999999999999999998874
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]
Probab=98.23 E-value=1.3e-07 Score=68.43 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred CCCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccC
Q psy10421 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50 (120)
Q Consensus 1 ~~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT 50 (120)
|+++++|+++..++. .|++......+||+|++|||+...+.||++||
T Consensus 150 i~~t~~l~~~~~~e~---~Pg~~~~~~~sde~~~~~ir~~~~t~~Hp~GT 196 (196)
T d1gpea2 150 LTSQGAMKEYFAGET---LPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196 (196)
T ss_dssp HHTSTTHHHHEEEEE---ESGGGSCTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred HHhhHHHHhhccccc---CCCcccCCCCCHHHHHHHHHhcCeecccCCCC
Confidence 467899999988776 57765334568999999999999999999998
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]
Probab=98.19 E-value=7.9e-07 Score=67.10 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=47.4
Q ss_pred CceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 60 TAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 60 ~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
+.+.|..++++|.+||++.|++.+|.....||.+||.|||||..+.|+++-
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~ 365 (367)
T d1n4wa1 315 GKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 365 (367)
T ss_dssp TTTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCccccCCccccCcCCCCcchhHHHHHHHHHHHHHHhh
Confidence 477888999999999999999999999999999999999999999987763
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]
Probab=97.99 E-value=6.3e-07 Score=64.67 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=37.8
Q ss_pred CCCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccC
Q psy10421 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50 (120)
Q Consensus 1 ~~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT 50 (120)
|+++++|+++..++. .|++.-....++++|++|||+...+.||++||
T Consensus 150 i~~~~~~~~~~~~e~---~Pg~~~~~d~~~~~~~~~ir~~~~t~~Hp~GT 196 (196)
T d1cf3a2 150 ISNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196 (196)
T ss_dssp HHTSGGGGGTEEEEE---ESGGGSCTTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred HHHhHHHHhcccccc---CCCcCCCCchhHHHHHHHHHhcCeeccccCCC
Confidence 467899999988776 45543223457899999999999999999998
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.96 E-value=3.9e-06 Score=63.35 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=45.1
Q ss_pred ceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
..+|..+|++|.++++|+|+|.+|.....||-+|+.++|||.-+.|+++
T Consensus 320 ~~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~ 368 (370)
T d3coxa1 320 KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISS 368 (370)
T ss_dssp TTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCceEeecccccCccCcCchhhHHHHHHHHHHHHHhh
Confidence 5678889999999999999999999999999999999999998888765
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.62 E-value=1.7e-05 Score=56.12 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=36.5
Q ss_pred CCCCccchhhccccccCC-------CCCCCCCCCCCHHHHHHHHHHhcccccccccC
Q psy10421 1 MSETEPFQSIGSKLVDRP-------IPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50 (120)
Q Consensus 1 ~~~t~~~~~~~~~~~~~~-------~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT 50 (120)
|+++++|+++..++..+. .|++ ...++||+|++|+|+.+.|.||++|+
T Consensus 116 i~~~~~~~~~~~~e~~p~~~~~~~~~p~p--~~~~dde~l~~~iR~~~~T~yHyhgg 170 (170)
T d1ju2a2 116 LLSTDALKPYKVEDLPGVEGFNILGIPLP--KDQTDDAAFETFCRESVASYWHYHGG 170 (170)
T ss_dssp HHTSGGGGGGCSSCCSTTCSCCBSSSCCC--SCTTCHHHHHHHHHHHCEECSCCEES
T ss_pred HHcChhhhhccccccccccccccccCCCc--cCCCCHHHHHHHHHhcCEeccCCCCc
Confidence 367899999998776321 2321 12468999999999999999999985
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=92.99 E-value=0.019 Score=39.41 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHhcccccccccC
Q psy10421 27 FGSDEYWVCCVKHLTMQTHHQCGT 50 (120)
Q Consensus 27 ~~~d~~~~~~ir~~~~~~~H~~GT 50 (120)
..++|+|.+++++...+.+|++||
T Consensus 158 ~~t~~~~~~~~~~~~~~~~H~vGT 181 (181)
T d1kdga2 158 TQTLEEYVDAYDPATMNSNHWVSS 181 (181)
T ss_dssp TSCHHHHHHHSCGGGGCCSCCBCT
T ss_pred CCCHHHHHHHHHHhCCcccCCCCC
Confidence 479999999999999999999998
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=85.12 E-value=0.62 Score=34.21 Aligned_cols=50 Identities=34% Similarity=0.488 Sum_probs=44.0
Q ss_pred ceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
-++...++|.|.+++++.+.+.+|..+..+|+...++++...+-.++...
T Consensus 298 H~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~g~~~~~~~ 347 (351)
T d1ju2a1 298 KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 347 (351)
T ss_dssp TTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcceEEEcccccccccccccCccccccccccceEecCCceEEEEeecc
Confidence 55666789999999999999999999999999999999998888776553
