Psyllid ID: psy10449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Secondary Structure (PSIPRED)
cEEEEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccHHEEcc
Coil and Loop (DISEMBL)
MYVCIVSGVYGFGCEDALTHLLNYvwpnifetsPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Flexible Loop (DISEMBL)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Low Complexity Region (SEG)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered region (IsUnstruct)
*YVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYV*
Disordered Region (DISOPRED)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered Region (DISEMBL)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered Region (DISPRO)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
O75533	1304	Splicing factor 3B subuni	yes	N/A	0.938	0.082	0.803	2e-52
Q99NB9	1304	Splicing factor 3B subuni	yes	N/A	0.938	0.082	0.794	6e-52
O57683	1307	Splicing factor 3B subuni	N/A	N/A	0.938	0.081	0.794	9e-52
Q10178	1205	U2 snRNP component prp10	yes	N/A	0.859	0.081	0.479	3e-26
P49955	971	U2 snRNP component HSH155	yes	N/A	0.894	0.105	0.461	8e-23

>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3

 Score =  203 bits (517), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct: 1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Homo sapiens (taxid: 9606)

>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1

 Score =  202 bits (513), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct: 1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Mus musculus (taxid: 10090)

>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1

 Score =  201 bits (512), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 96/107 (89%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R++QY LQGLFHP
Sbjct: 1201 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHP 1260

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY L
Sbjct: 1261 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL 1307

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Xenopus laevis (taxid: 8355)

>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp10 PE=1 SV=3

 Score =  116 bits (291), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 66/98 (67%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            G  G G EDA+ HLLN +WPNI E SPH++ A  + ++G+R  +G   I+ Y++QGLFHP
Sbjct: 1099 GCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNCIGVGPIMAYLVQGLFHP 1158

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 105
            +RKVR+ YW  YNS Y+   DA++  YP + +D  N Y
Sbjct: 1159 SRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196

Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH155 PE=1 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 11  GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 70
           G G EDA  HL+N + PNIFETSPH +   ++ +E L  ALGP   + Y+  GLFHPA+ 
Sbjct: 870 GTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYIWAGLFHPAKN 929

Query: 71  VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
           VR  +W++YN++Y+  QDA++  YP +  D    Y+  ELD VL
Sbjct: 930 VRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971

Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
399108175	1343	splicing factor 3b subunit 1 [Rhyzoperth	0.938	0.079	0.878	2e-55
189240885	1322	PREDICTED: similar to U2 small nuclear r	0.938	0.080	0.859	1e-54
66505925	1315	PREDICTED: splicing factor 3B subunit 1-	0.938	0.081	0.869	1e-54
383857066	1316	PREDICTED: splicing factor 3B subunit 1-	0.938	0.081	0.869	1e-54
340712061	1316	PREDICTED: splicing factor 3B subunit 1-	0.938	0.081	0.869	1e-54
332021647	1317	Splicing factor 3B subunit 1 [Acromyrmex	0.938	0.081	0.869	1e-54
322788435	1303	hypothetical protein SINV_80122 [Solenop	0.938	0.082	0.869	1e-54
307192374	1304	Splicing factor 3B subunit 1 [Harpegnath	0.938	0.082	0.869	1e-54
307182141	1267	Splicing factor 3B subunit 1 [Camponotus	0.938	0.084	0.869	1e-54
45550087	1340	CG2807, isoform A [Drosophila melanogast	0.938	0.079	0.878	2e-54

>gi|399108175|gb|AFP20535.1| splicing factor 3b subunit 1 [Rhyzopertha dominica]

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/107 (87%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLNYVWPNIFETSPHLVQAFMDA+EG+RVALGP++ILQY LQGLFHP
Sbjct: 1237 GVYGFGCEDALIHLLNYVWPNIFETSPHLVQAFMDAIEGMRVALGPIKILQYTLQGLFHP 1296

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1297 ARKVRDVYWKIYNSLYIGGQDALVAGYPRISNDPKNQYIRYELDYVL 1343

Source: Rhyzopertha dominica

Species: Rhyzopertha dominica

Genus: Rhyzopertha

Family: Bostrichidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240885|ref|XP_971484.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein [Tribolium castaneum]

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/107 (85%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLNYVWPNIFETSPHLVQAFMDA+EG+RVALGP++ILQY LQGLFHP
Sbjct: 1216 GVYGFGCEDALIHLLNYVWPNIFETSPHLVQAFMDAIEGMRVALGPIKILQYTLQGLFHP 1275

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RY++DYVL
Sbjct: 1276 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIANDPKNQYIRYDMDYVL 1322

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66505925|ref|XP_623732.1| PREDICTED: splicing factor 3B subunit 1-like isoform 1 [Apis mellifera] gi|380030470|ref|XP_003698871.1| PREDICTED: splicing factor 3B subunit 1-like [Apis florea]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1209 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1268

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1269 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1315

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857066|ref|XP_003704027.1| PREDICTED: splicing factor 3B subunit 1-like [Megachile rotundata]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1210 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1269

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1270 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712061|ref|XP_003394583.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus terrestris] gi|350398721|ref|XP_003485287.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus impatiens]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1210 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1269

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1270 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1316

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021647|gb|EGI62006.1| Splicing factor 3B subunit 1 [Acromyrmex echinatior]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1211 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1270

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1271 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1317

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788435|gb|EFZ14106.1| hypothetical protein SINV_80122 [Solenopsis invicta]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1197 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1256

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1257 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1303

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192374|gb|EFN75618.1| Splicing factor 3B subunit 1 [Harpegnathos saltator]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1198 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1257

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1258 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1304

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182141|gb|EFN69484.1| Splicing factor 3B subunit 1 [Camponotus floridanus]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/107 (86%), Positives = 101/107 (94%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQY LQGLFHP
Sbjct: 1161 GVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHP 1220

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1221 ARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1267

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550087|ref|NP_608534.2| CG2807, isoform A [Drosophila melanogaster] gi|442625022|ref|NP_001259837.1| CG2807, isoform B [Drosophila melanogaster] gi|45445002|gb|AAF51478.2| CG2807, isoform A [Drosophila melanogaster] gi|440213087|gb|AGB92374.1| CG2807, isoform B [Drosophila melanogaster]

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/107 (87%), Positives = 100/107 (93%)

Query: 8    GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
            GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD+V+GLRV+LGP++ILQY LQGLFHP
Sbjct: 1234 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDSVDGLRVSLGPIKILQYTLQGLFHP 1293

Query: 68   ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
            ARKVRDVYWKIYNSLYIGGQDALI+ YPRI ND KN Y RYELDY L
Sbjct: 1294 ARKVRDVYWKIYNSLYIGGQDALIAGYPRITNDPKNQYERYELDYTL 1340

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0031266	1340	CG2807 [Drosophila melanogaste	0.938	0.079	0.878	1.8e-48
UNIPROTKB|E1C2C3	1301	SF3B1 "Uncharacterized protein	0.938	0.082	0.803	1.7e-45
UNIPROTKB|F1SMZ9	1303	SF3B1 "Uncharacterized protein	0.938	0.082	0.803	2.2e-45
UNIPROTKB|F1MX61	1304	SF3B1 "Uncharacterized protein	0.938	0.082	0.803	2.2e-45
UNIPROTKB|O75533	1304	SF3B1 "Splicing factor 3B subu	0.938	0.082	0.803	2.2e-45
UNIPROTKB|G3V7T6	1304	Sf3b1 "Splicing factor 3b, sub	0.938	0.082	0.803	2.2e-45
MGI|MGI:1932339	1304	Sf3b1 "splicing factor 3b, sub	0.938	0.082	0.794	4.5e-45
ZFIN|ZDB-GENE-040827-3	1315	sf3b1 "splicing factor 3b, sub	0.938	0.081	0.785	2.3e-43
DICTYBASE|DDB_G0275957	1051	sf3b1 "splicing factor 3B subu	0.938	0.101	0.691	2e-38
TAIR|locus:2173333	1269	AT5G64270 [Arabidopsis thalian	0.903	0.081	0.699	1.2e-36

FB|FBgn0031266 CG2807 [Drosophila melanogaster (taxid:7227)]

 Score = 518 (187.4 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 94/107 (87%), Positives = 100/107 (93%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD+V+GLRV+LGP++ILQY LQGLFHP
Sbjct:  1234 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDSVDGLRVSLGPIKILQYTLQGLFHP 1293

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNSLYIGGQDALI+ YPRI ND KN Y RYELDY L
Sbjct:  1294 ARKVRDVYWKIYNSLYIGGQDALIAGYPRITNDPKNQYERYELDYTL 1340

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS;IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|E1C2C3 SF3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 490 (177.5 bits), Expect = 1.7e-45, P = 1.7e-45
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1195 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1254

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1255 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL 1301

GO:0003682 "chromatin binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1SMZ9 SF3B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 489 (177.2 bits), Expect = 2.2e-45, P = 2.2e-45
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1197 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1256

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1257 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1303

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|F1MX61 SF3B1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 2.2e-45, P = 2.2e-45
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|O75533 SF3B1 "Splicing factor 3B subunit 1" [Homo sapiens (taxid:9606)]

 Score = 489 (177.2 bits), Expect = 2.2e-45, P = 2.2e-45
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0003682 "chromatin binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=NAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;NAS;TAS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|G3V7T6 Sf3b1 "Splicing factor 3b, subunit 1, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 489 (177.2 bits), Expect = 2.2e-45, P = 2.2e-45
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0003682 "chromatin binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1932339 Sf3b1 "splicing factor 3b, subunit 1" [Mus musculus (taxid:10090)]

 Score = 486 (176.1 bits), Expect = 4.5e-45, P = 4.5e-45
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1198 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1257

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct:  1258 ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IGI

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

ZFIN|ZDB-GENE-040827-3 sf3b1 "splicing factor 3b, subunit 1" [Danio rerio (taxid:7955)]

 Score = 470 (170.5 bits), Expect = 2.3e-43, P = 2.3e-43
 Identities = 84/107 (78%), Positives = 95/107 (88%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHP
Sbjct:  1209 GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP 1268

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             ARKVRDVYWKIYNS+YIG QDALI+ YP I ND KN Y+RYEL+Y L
Sbjct:  1269 ARKVRDVYWKIYNSIYIGSQDALIAHYPLIFNDEKNSYVRYELEYFL 1315

GO:0030318 "melanocyte differentiation" evidence=IGI;IMP

GO:0014032 "neural crest cell development" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IGI

DICTYBASE|DDB_G0275957 sf3b1 "splicing factor 3B subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 422 (153.6 bits), Expect = 2.0e-38, P = 2.0e-38
 Identities = 74/107 (69%), Positives = 88/107 (82%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GV G GCED+LTHLLNYVWPN+FETSPH++ AF++AVEGLR ALGP  ILQY LQGLFHP
Sbjct:   945 GVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAVEGLRFALGPNTILQYTLQGLFHP 1004

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
             +RKVR++YWK+YN LYI  QDAL   YPR  ++  N Y RYELD+V+
Sbjct:  1005 SRKVRNIYWKLYNMLYISSQDALTPCYPRTLDENDNKYQRYELDFVI 1051

GO:0005686 "U2 snRNP" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0000245 "spliceosomal complex assembly" evidence=ISS

TAIR|locus:2173333 AT5G64270 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 1.2e-36, P = 1.2e-36
 Identities = 72/103 (69%), Positives = 86/103 (83%)

Query:     8 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 67
             GV G GCEDAL HLLN++WPNIFETSPH++ A M+A+EG+RVALG   IL Y LQGLFHP
Sbjct:  1163 GVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALGAAVILNYCLQGLFHP 1222

Query:    68 ARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYEL 110
             ARKVR+VYWKIYNSLYIG QD L++AYP ++++  NVY R EL
Sbjct:  1223 ARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPEL 1265

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75533	SF3B1_HUMAN	No assigned EC number	0.8037	0.9385	0.0820	yes	N/A
Q99NB9	SF3B1_MOUSE	No assigned EC number	0.7943	0.9385	0.0820	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
COG5181	975	COG5181, HSH155, U2 snRNP spliceosome subunit [RNA	3e-32

>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification]

 Score =  118 bits (297), Expect = 3e-32
 Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 5   IVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 64
           +V    G G EDA  HLLN +WPNI E SPH++Q+F + +E     LG   +++YV QGL
Sbjct: 868 LVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927

Query: 65  FHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 114
           FHP+  VR  YW +YN +Y+   DA++  YP  ++   N  L   L   +
Sbjct: 928 FHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDL--NPELARTLHICI 975

Length = 975

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG0213|consensus	1172		100.0
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	100.0
PF14959	115	GSAP-16: gamma-Secretase-activating protein C-term	84.14

>KOG0213|consensus

Probab=100.00  E-value=3.2e-54  Score=389.51  Aligned_cols=112  Identities=65%  Similarity=1.161  Sum_probs=110.5

Q ss_pred             eeeeeeecccCchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449          3 VCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL   82 (114)
Q Consensus         3 ~~laLg~~GlG~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~   82 (114)
                      .||||||+|+|||||+|||||++||||||||||||||++||+||+|++|||+.+|+|+||||||||||||++|||+||++
T Consensus      1061 ~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1061 KHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             HHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCceeecccCcccCcccccccccccccC
Q psy10449         83 YIGGQDALISAYPRIQNDMKNVYLRYELDYVL  114 (114)
Q Consensus        83 Yi~~~DalVp~YP~~~~~~~~~y~r~eL~~~l  114 (114)
                      |+|+||||||+||+.+|+.+|.|.|.|||+++
T Consensus      1141 y~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1141 YHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred             hhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence            99999999999999999999999999999975

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=1.4e-45  Score=329.66  Aligned_cols=110  Identities=41%  Similarity=0.755  Sum_probs=104.1

Q ss_pred             eeeeeeecccCchHHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhh
Q psy10449          3 VCIVSGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSL   82 (114)
Q Consensus         3 ~~laLg~~GlG~EDa~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~   82 (114)
                      .|++|||.|+|.|||+|||||++|||||||||||||+|.|++||++.+||||.+|+|+|||||||+|+||+.||++||++
T Consensus       866 ~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~m  945 (975)
T COG5181         866 RHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIM  945 (975)
T ss_pred             HHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCceeecccCcccCcccccccccccccC
Q psy10449         83 YIGGQDALISAYPRIQNDMKNVYLRYELDYVL  114 (114)
Q Consensus        83 Yi~~~DalVp~YP~~~~~~~~~y~r~eL~~~l  114 (114)
                      |+++|||||||||..+|+  |.+...||+++|
T Consensus       946 yv~~~damvp~ypv~~d~--n~e~~~~l~i~i  975 (975)
T COG5181         946 YVFDSDAMVPCYPVEEDL--NPELARTLHICI  975 (975)
T ss_pred             hhcccccccccccCCCCc--CHHHHhhhhccC
Confidence            999999999999988776  344557888765

>PF14959 GSAP-16: gamma-Secretase-activating protein C-term

Probab=84.14  E-value=0.89  Score=33.50  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhhhHHhhchH----------------HHHHHHHhhhcccchhhhH
Q psy10449         35 HLVQAFMDAVEGLRVALGPV----------------RILQYVLQGLFHPARKVRD   73 (114)
Q Consensus        35 hVi~av~~aie~lr~alGp~----------------~~l~Y~lqGLFHPARkVR~   73 (114)
                      |+.+++.+|+|++..-++||                .++||+=.|.|.....|-+
T Consensus        44 ~lmer~~~A~~~l~fPlP~GF~t~f~~LG~rcLp~~~FLqYid~gVf~lt~~~v~   98 (115)
T PF14959_consen   44 HLMERIYEATESLCFPLPPGFHTFFTYLGYRCLPLHTFLQYIDNGVFELTEDFVK   98 (115)
T ss_pred             HHHHHHHHHHHHccCCCCccHHHHHHHHhHhhccHHHHHHHHhcCeeEecHHHHH
Confidence            56779999999999999998                8999999999999876644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.46
2x1g_F	971	Cadmus; transport protein, developmental protein,	88.06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.94
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	85.5
2x19_B	963	Importin-13; nuclear transport, protein transport;	84.66
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	81.46
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	81.28
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	80.62

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=92.46  E-value=0.41  Score=34.10  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchHHHHHHHHhhhcccchhhhHHHHhhhhhhhccC-CC-ceeec
Q psy10449         16 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGG-QD-ALISA   93 (114)
Q Consensus        16 Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~-~D-alVp~   93 (114)
                      .-...++..++..+=+++++|+++..+|++++--..+...++.-++++|-|+..+||+.=...-..+--.+ .+ ...++
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~  173 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL  173 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence            44455666666666678999999999999999999999999999999999999999998888777654332 22 23445


Q ss_pred             ccC
Q psy10449         94 YPR   96 (114)
Q Consensus        94 YP~   96 (114)
                      +|.
T Consensus       174 l~~  176 (242)
T 2qk2_A          174 LKL  176 (242)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=88.06  E-value=0.16  Score=43.24  Aligned_cols=89  Identities=11%  Similarity=-0.002  Sum_probs=66.9

Q ss_pred             eeeecccCch----HHHHHHHHhhcccccc--ccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHhhhcccchhhhHH
Q psy10449          6 VSGVYGFGCE----DALTHLLNYVWPNIFE--TSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDV   74 (114)
Q Consensus         6 aLg~~GlG~E----Da~iHlLN~vwPNIfE--tSphVi~av~~aie~lr~alGp~-----~~l~Y~lqGLFHPARkVR~~   74 (114)
                      ++|+.+-||.    +.+-.+++ +.|.+..  +.|+|..+.+.++-.++-.+++.     .++++++.|| +  .+|+..
T Consensus       487 ~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~  562 (971)
T 2x1g_F          487 SFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQ  562 (971)
T ss_dssp             HHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHH
T ss_pred             HHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHH
Confidence            5677777765    35566777 6677773  48999999999999999988843     6789999999 5  678888


Q ss_pred             HHhhhhhhhccCCCceeecccCcc
Q psy10449         75 YWKIYNSLYIGGQDALISAYPRIQ   98 (114)
Q Consensus        75 YWkiYN~~Yi~~~DalVp~YP~~~   98 (114)
                      -....-++==.+.+.|.||+|.+-
T Consensus       563 A~~al~~l~~~~~~~l~p~~~~ll  586 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYADPLL  586 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHH
Confidence            777777666667778999998663

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=87.94  E-value=0.079  Score=39.59  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=63.7

Q ss_pred             HHHHhhcccccc----ccHHHHHHHHHHHhhhHHhh------c-hHHHHHHHHhhhcccchhhhHHHHhhhhhhhccCC-
Q psy10449         20 HLLNYVWPNIFE----TSPHLVQAFMDAVEGLRVAL------G-PVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQ-   87 (114)
Q Consensus        20 HlLN~vwPNIfE----tSphVi~av~~aie~lr~al------G-p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~~~-   87 (114)
                      .....++|.++|    ..+.|.++...|++++--+.      + +..+|.-++++|=|+..+||+.--+.-.++.-.+. 
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            555666777766    46889999999999999999      6 77899999999999999999999888888776666 


Q ss_pred             --Cceeecc-cCc
Q psy10449         88 --DALISAY-PRI   97 (114)
Q Consensus        88 --DalVp~Y-P~~   97 (114)
                        +.+.|++ |.+
T Consensus       180 ~~~~l~~~l~~~i  192 (249)
T 2qk1_A          180 GYSTLQRYLKDEV  192 (249)
T ss_dssp             CSHHHHHHHTTTH
T ss_pred             cchhHHHHHHHHH
Confidence              4577777 654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=85.50  E-value=0.61  Score=40.18  Aligned_cols=77  Identities=8%  Similarity=0.002  Sum_probs=58.1

Q ss_pred             HHHhhccccccc---cHHHHHHHHHHHhhhHHhhchH---HHHHHHHhhhcccchhhhHHHHhhhhhhhcc---------
Q psy10449         21 LLNYVWPNIFET---SPHLVQAFMDAVEGLRVALGPV---RILQYVLQGLFHPARKVRDVYWKIYNSLYIG---------   85 (114)
Q Consensus        21 lLN~vwPNIfEt---SphVi~av~~aie~lr~alGp~---~~l~Y~lqGLFHPARkVR~~YWkiYN~~Yi~---------   85 (114)
                      +.+.+.|.+-.+   .|.|+.+.+.++--++--+.|.   .+++.++++|-++..+||..-+....++-=.         
T Consensus       456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~  535 (960)
T 1wa5_C          456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (960)
T ss_dssp             HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence            346778877666   8999999999999888877654   5677888899899899998777766653211         


Q ss_pred             --CCCceeecccCc
Q psy10449         86 --GQDALISAYPRI   97 (114)
Q Consensus        86 --~~DalVp~YP~~   97 (114)
                        +.+.+.||.|.+
T Consensus       536 ~~~~~~l~p~l~~l  549 (960)
T 1wa5_C          536 IFHKEDISNSTEIL  549 (960)
T ss_dssp             SSCGGGTTTTHHHH
T ss_pred             cccHHHhhhhHHHH
Confidence              345688888854

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=84.66  E-value=0.54  Score=39.68  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=66.7

Q ss_pred             eeeeecccCch----HHHHHHHHhhccccccccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHhhhcccchhhhHHH
Q psy10449          5 IVSGVYGFGCE----DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDVY   75 (114)
Q Consensus         5 laLg~~GlG~E----Da~iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp~-----~~l~Y~lqGLFHPARkVR~~Y   75 (114)
                      +|+|+.+-||.    +.+..+++ +.+++-++.|+|..+.+.++..++-.++..     .++++++++|-+  .+||..=
T Consensus       471 ~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A  547 (963)
T 2x19_B          471 YGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSS  547 (963)
T ss_dssp             HHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHH
T ss_pred             HHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHH
Confidence            35666666654    45566676 567787789999999999999998877632     567888888866  5788766


Q ss_pred             HhhhhhhhccCCCceeecccCc
Q psy10449         76 WKIYNSLYIGGQDALISAYPRI   97 (114)
Q Consensus        76 WkiYN~~Yi~~~DalVp~YP~~   97 (114)
                      .....++=-.+.+.|+||.|.+
T Consensus       548 ~~al~~l~~~~~~~l~p~~~~i  569 (963)
T 2x19_B          548 VSTLKKICRECKYDLPPYAANI  569 (963)
T ss_dssp             HHHHHHHHHHTGGGCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Confidence            6666666556778899998866

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=81.46  E-value=1.2  Score=37.24  Aligned_cols=92  Identities=10%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             eeeeecccCchHHH----HHHHHhhccccccccHHHHHHHHHHHhhhHHhhch-------HHHHHHHHhhhcccchhhhH
Q psy10449          5 IVSGVYGFGCEDAL----THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFHPARKVRD   73 (114)
Q Consensus         5 laLg~~GlG~EDa~----iHlLN~vwPNIfEtSphVi~av~~aie~lr~alGp-------~~~l~Y~lqGLFHPARkVR~   73 (114)
                      .|||...-||.+.+    -.++..+.+-+-+++|+|+.+...++..+--.+++       ..+++.++++|-.+..+||+
T Consensus       381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~  460 (852)
T 4fdd_A          381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE  460 (852)
T ss_dssp             HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            36777777776543    34555555666679999999999999887776665       26778888888777778876


Q ss_pred             -HHHhhhhhhhccCCCceeecccCc
Q psy10449         74 -VYWKIYNSLYIGGQDALISAYPRI   97 (114)
Q Consensus        74 -~YWkiYN~~Yi~~~DalVp~YP~~   97 (114)
                       +.|-+-|-+ -...+.+.||+|.+
T Consensus       461 ~a~~aL~~l~-~~~~~~l~~~l~~l  484 (852)
T 4fdd_A          461 AACSAFATLE-EEACTELVPYLAYI  484 (852)
T ss_dssp             HHHHHHHHHH-HHHGGGGGGGHHHH
T ss_pred             HHHHHHHHHH-HHhhHhhHhHHHHH
Confidence             455555433 23345688888865

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=81.28  E-value=1.2  Score=39.86  Aligned_cols=66  Identities=11%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             ccHHHHHHHHHHHhhhHHhhchH-----HHHHHHHh--hhcccchhhhHHHHhhhhhhhccCCCceeecccCc
Q psy10449         32 TSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQ--GLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI   97 (114)
Q Consensus        32 tSphVi~av~~aie~lr~alGp~-----~~l~Y~lq--GLFHPARkVR~~YWkiYN~~Yi~~~DalVp~YP~~   97 (114)
                      +-|.|....++.+....--+...     .+|++++.  |+.||.+|||..=|..+.++-=.+...|+|+.+.+
T Consensus       507 ~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i  579 (980)
T 3ibv_A          507 PHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS  579 (980)
T ss_dssp             CCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence            45889999998887766555432     78999999  99999999999999999998888888888876644

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=80.62  E-value=1.9  Score=31.96  Aligned_cols=68  Identities=10%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             cccHHHHHHHHHHHhhhHHhhc----------hHHHHHHHHhhhcccchhhhHHHHhhhhhhh--ccCCCceeecccCcc
Q psy10449         31 ETSPHLVQAFMDAVEGLRVALG----------PVRILQYVLQGLFHPARKVRDVYWKIYNSLY--IGGQDALISAYPRIQ   98 (114)
Q Consensus        31 EtSphVi~av~~aie~lr~alG----------p~~~l~Y~lqGLFHPARkVR~~YWkiYN~~Y--i~~~DalVp~YP~~~   98 (114)
                      ...|.+.+..+..|..+--+-+          +..++..+.+.|.++.+.||+.=|.....++  +|. +.+-|+-|.++
T Consensus       157 ~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~-~~~~p~l~~Ld  235 (249)
T 2qk1_A          157 HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM-NTFVKTLEHLD  235 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS-GGGHHHHHHSC
T ss_pred             CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHh
Confidence            3579999999999988887776          2457888899999999999999999999998  664 45899988884


Q ss_pred             c
Q psy10449         99 N   99 (114)
Q Consensus        99 ~   99 (114)
                      +
T Consensus       236 ~  236 (249)
T 2qk1_A          236 N  236 (249)
T ss_dssp             H
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	87.8

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.15  Score=40.31  Aligned_cols=93  Identities=11%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             eeeeecccCchHHHHH----HHHhhccccccccHHHHHHHHHHHhhhHHhhch-------HHHHHHHHhhhcccchhhhH
Q psy10449          5 IVSGVYGFGCEDALTH----LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFHPARKVRD   73 (114)
Q Consensus         5 laLg~~GlG~EDa~iH----lLN~vwPNIfEtSphVi~av~~aie~lr~alGp-------~~~l~Y~lqGLFHPARkVR~   73 (114)
                      +|||+.--||.+.+.-    ++..+.+.+=.++|.|+++...++--+--.+.+       ..+++-+++++..+.++||+
T Consensus       417 ~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~  496 (888)
T d1qbkb_         417 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE  496 (888)
T ss_dssp             HHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHH
T ss_pred             HHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHH
Confidence            3567666688776543    444444445568999999888777654433322       24788899999999999998


Q ss_pred             HHHhhhhhhhccCCCceeecccCc
Q psy10449         74 VYWKIYNSLYIGGQDALISAYPRI   97 (114)
Q Consensus        74 ~YWkiYN~~Yi~~~DalVp~YP~~   97 (114)
                      .=.+...++-=...+.++||+|.+
T Consensus       497 ~a~~al~~l~~~~~~~l~p~~~~i  520 (888)
T d1qbkb_         497 AACSAFATLEEEACTELVPYLAYI  520 (888)
T ss_dssp             HHHHHHHHHHHHHTTSSGGGHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHH
Confidence            777777666556677899998865