Psyllid ID: psy10455

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAEEVLDDEDEDDDRSKRRSRGGGRKKGSMGKKAGASTSKVPTLKIKLGKRKQASSITDLV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHcHcccccccccccccccccccccccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mslnarfgEVECLAESHqhlskeslagnkpanaVLHKVVAeevlddededddrskrrsrgggrkkgsmgkkagastskvptlkiklgkrkqassitdlv
Flexible Loop (DISEMBL)
MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVvaeevlddededddrskrrsrgggrkkgsmgkkagastskvptlkiklgkrkqassitdlv
Low Complexity Region (SEG)
MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAEEVLddededddrskrrsrgggrkkgsmgkkagastskVPTLKIKLGKRKQASSITDLV
Disordered region (IsUnstruct)
***************************************************************************************************
Disordered Region (DISOPRED)
****ARFGEVECLAES*************PANAVLHKVVAEEVLDDEDE*****************************VPTLKI**************V
Disordered Region (DISEMBL)
********EVECLAESHQHLSKESLAGNKPANAVLHKVVAEEV***********************************VPTLKI***************
Disordered Region (DISPRO)
*SLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAEEVLDDEDE****************************KVPTLK*KLGK***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAEEVLDDEDEDDDRSKRRSRGGGRKKGSMGKKAGASTSKVPTLKIKLGKRKQASSITDLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
O97159	1982	Chromodomain-helicase-DNA	yes	N/A	0.535	0.026	0.781	2e-16
Q14839	1912	Chromodomain-helicase-DNA	yes	N/A	0.464	0.024	0.791	3e-15
Q6PDQ2	1915	Chromodomain-helicase-DNA	yes	N/A	0.464	0.024	0.791	3e-15
Q12873	2000	Chromodomain-helicase-DNA	no	N/A	0.535	0.026	0.727	8e-15
Q8TDI0	1954	Chromodomain-helicase-DNA	no	N/A	0.535	0.027	0.745	2e-14
G5EBZ4	1829	Protein let-418 OS=Caenor	yes	N/A	0.444	0.024	0.5	0.0001

>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1846 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 1900

Vital role in development. Protein binds to a portion of Hunchback (HB) protein that is critical for repression of bithorax complex (BXC) genes. May also function in polycomb group (PcG) repression of Hox genes.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 2/48 (4%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDD 46
            M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L D
Sbjct: 1816 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSD 1863

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 2/48 (4%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDD 46
            M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L D
Sbjct: 1819 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSD 1866

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 44/55 (80%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            M+L+ARF E ECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1827 MALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTR 1881

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones. Required for anchoring centrosomal pericentrin in both interphase and mitosis, for spindle organization and centrosome integrity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 44/55 (80%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            M+LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1823 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTR 1877

May play a role in the development of the nervous system and the pathogenesis of neural tumors.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 3    LNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVAE--EVLDD 46
            L  RF ++E +AES  +++KES AGN+ ANAVLHK + +  E+L D
Sbjct: 1620 LAQRFADLENIAESQANIAKESSAGNRNANAVLHKTLVQLDEILSD 1665

Part of a NuRD (Nucleosome Remodeling and Deacetylase) complex which is implicated in the synMuv B pathway that negatively regulates specification of vulval cell fate. This negative regulation is thought to be mediated via interaction with the promoter of lin-39, a key regulator in vulva development, and is dependent on the presence lin-1. Contributes to negative regulation of lag-2 which is expressed in the gut during larval development. Has a broad role in development.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
169648431	243	Mi-2 [Drosophila melanogaster]	0.535	0.218	0.781	2e-15
169648423	246	Mi-2 [Drosophila melanogaster]	0.535	0.215	0.781	2e-15
195591651	275	GD12243 [Drosophila simulans] gi|1941975	0.535	0.192	0.781	3e-15
169648419	356	Mi-2 [Drosophila melanogaster]	0.535	0.148	0.781	4e-15
169648427	381	Mi-2 [Drosophila melanogaster]	0.535	0.139	0.781	4e-15
169648399	393	Mi-2 [Drosophila melanogaster]	0.535	0.134	0.781	5e-15
169648395	393	Mi-2 [Drosophila melanogaster] gi|169648	0.535	0.134	0.781	5e-15
2645435	1518	CHD3 [Drosophila melanogaster]	0.535	0.034	0.781	5e-15
169648441	393	Mi-2 [Drosophila melanogaster]	0.535	0.134	0.781	5e-15
169648445	393	Mi-2 [Drosophila melanogaster]	0.535	0.134	0.781	5e-15

>gi|169648431|gb|ACA62217.1| Mi-2 [Drosophila melanogaster]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 129 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648423|gb|ACA62213.1| Mi-2 [Drosophila melanogaster]

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 132 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVPR 186

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195591651|ref|XP_002085552.1| GD12243 [Drosophila simulans] gi|194197561|gb|EDX11137.1| GD12243 [Drosophila simulans]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 139 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 193

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648419|gb|ACA62211.1| Mi-2 [Drosophila melanogaster]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 242 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 296

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648427|gb|ACA62215.1| Mi-2 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 267 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 321

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648399|gb|ACA62201.1| Mi-2 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 279 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 333

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648395|gb|ACA62199.1| Mi-2 [Drosophila melanogaster] gi|169648397|gb|ACA62200.1| Mi-2 [Drosophila melanogaster] gi|169648401|gb|ACA62202.1| Mi-2 [Drosophila melanogaster] gi|169648403|gb|ACA62203.1| Mi-2 [Drosophila melanogaster] gi|169648405|gb|ACA62204.1| Mi-2 [Drosophila melanogaster] gi|169648407|gb|ACA62205.1| Mi-2 [Drosophila melanogaster] gi|169648409|gb|ACA62206.1| Mi-2 [Drosophila melanogaster] gi|169648411|gb|ACA62207.1| Mi-2 [Drosophila melanogaster] gi|169648413|gb|ACA62208.1| Mi-2 [Drosophila melanogaster] gi|169648415|gb|ACA62209.1| Mi-2 [Drosophila melanogaster] gi|169648421|gb|ACA62212.1| Mi-2 [Drosophila melanogaster] gi|169648425|gb|ACA62214.1| Mi-2 [Drosophila melanogaster] gi|169648433|gb|ACA62218.1| Mi-2 [Drosophila melanogaster] gi|169648437|gb|ACA62220.1| Mi-2 [Drosophila melanogaster] gi|169648439|gb|ACA62221.1| Mi-2 [Drosophila melanogaster] gi|169648443|gb|ACA62223.1| Mi-2 [Drosophila melanogaster] gi|169648449|gb|ACA62226.1| Mi-2 [Drosophila melanogaster] gi|169648451|gb|ACA62227.1| Mi-2 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 279 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 333

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2645435|gb|AAB87384.1| CHD3 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1    MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
            MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 1382 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 1436

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648441|gb|ACA62222.1| Mi-2 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 279 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 333

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169648445|gb|ACA62224.1| Mi-2 [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDR 53
           MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L D   D  R
Sbjct: 279 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSR 333

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
FB|FBgn0262519	1982	Mi-2 [Drosophila melanogaster	0.444	0.022	0.869	1.7e-13
UNIPROTKB|I3L229	250	CHD3 "Chromodomain-helicase-DN	0.414	0.164	0.837	2.7e-13
UNIPROTKB|Q5TG85	808	CHD5 "Chromodomain-helicase-DN	0.444	0.054	0.826	5e-13
UNIPROTKB|H7C3H7	277	CHD3 "Chromodomain-helicase-DN	0.373	0.133	0.891	5.6e-13
UNIPROTKB|E1C2A5	771	E1C2A5 "Uncharacterized protei	0.444	0.057	0.826	9.8e-13
UNIPROTKB|E2R1M3	1812	CHD5 "Uncharacterized protein"	0.444	0.024	0.826	1.4e-12
UNIPROTKB|F1MFF9	1852	Bt.62145 "Uncharacterized prot	0.444	0.023	0.826	1.4e-12
UNIPROTKB|F1NH79	1895	CHD4 "Uncharacterized protein"	0.444	0.023	0.804	1.5e-12
UNIPROTKB|F5GWX5	1905	CHD4 "Chromodomain-helicase-DN	0.444	0.023	0.804	1.5e-12
UNIPROTKB|E2RHA0	1912	CHD4 "Uncharacterized protein"	0.444	0.023	0.804	1.5e-12

FB|FBgn0262519 Mi-2 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 40/46 (86%), Positives = 42/46 (91%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVL 44
             MSLNARF EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L
Sbjct:  1846 MSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELL 1891

GO:0016887 "ATPase activity" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=ISS

GO:0016581 "NuRD complex" evidence=ISS;TAS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS;IDA

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0031491 "nucleosome binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA

UNIPROTKB|I3L229 CHD3 "Chromodomain-helicase-DNA-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 36/43 (83%), Positives = 38/43 (88%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKV--VAE 41
             M+L+ARF E ECLAESHQHLSKESLAGNKPANAVLHK   VAE
Sbjct:   146 MALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKAGGVAE 188

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

UNIPROTKB|Q5TG85 CHD5 "Chromodomain-helicase-DNA-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 38/46 (82%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVL 44
             M+LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L
Sbjct:   680 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELL 725

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

UNIPROTKB|H7C3H7 CHD3 "Chromodomain-helicase-DNA-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHK 37
             M+L+ARF E ECLAESHQHLSKESLAGNKPANAVLHK
Sbjct:   119 MALHARFAEAECLAESHQHLSKESLAGNKPANAVLHK 155

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

UNIPROTKB|E1C2A5 E1C2A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 9.8e-13, P = 9.8e-13
 Identities = 38/46 (82%), Positives = 40/46 (86%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVL 44
             M LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L
Sbjct:   679 MLLNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNHLEELL 724

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

UNIPROTKB|E2R1M3 CHD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 38/46 (82%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVL 44
             M+LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L
Sbjct:  1681 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELL 1726

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1MFF9 Bt.62145 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 38/46 (82%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVL 44
             M+LNAR  EVECLAESHQHLSKESLAGNKPANAVLHKV+   EE+L
Sbjct:  1715 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELL 1760

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1NH79 CHD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVA--EEVL 44
             M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L
Sbjct:  1795 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELL 1840

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

UNIPROTKB|F5GWX5 CHD4 "Chromodomain-helicase-DNA-binding protein 4" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVA--EEVL 44
             M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L
Sbjct:  1809 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELL 1854

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E2RHA0 CHD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVA--EEVL 44
             M+LN RF EVECLAESHQHLSKES+AGNKPANAVLHKV+   EE+L
Sbjct:  1816 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELL 1861

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O97159	CHDM_DROME	3, ., 6, ., 4, ., 1, 2	0.7818	0.5353	0.0267	yes	N/A
Q14839	CHD4_HUMAN	3, ., 6, ., 4, ., 1, 2	0.7916	0.4646	0.0240	yes	N/A
Q6PDQ2	CHD4_MOUSE	3, ., 6, ., 4, ., 1, 2	0.7916	0.4646	0.0240	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam08074	174	pfam08074, CHDCT2, CHDCT2 (NUC038) domain	3e-20

>gnl|CDD|219716 pfam08074, CHDCT2, CHDCT2 (NUC038) domain

 Score = 79.5 bits (196), Expect = 3e-20
 Identities = 38/55 (69%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVVA--EEVLDDEDEDDDR 53
           M+LNARF E+ECLAESHQHLSKESLAGN+ ANAVLHKV+   +E+L D   D +R
Sbjct: 94  MALNARFAELECLAESHQHLSKESLAGNRNANAVLHKVLNQLDELLSDMKADVNR 148

The CHDCT2 C-terminal domain is found in PHD/RING finger and chromo domain-associated CHD-like helicases. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF08074	173	CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR01295	99.88

>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases []

Probab=99.88  E-value=5.2e-24  Score=161.70  Aligned_cols=60  Identities=68%  Similarity=0.908  Sum_probs=57.8

Q ss_pred             CccccccchhhhhhhhcchhhhhhhcCCCCchhhhHHHH--HHhhhcccccchhhhhcccCC
Q psy10455          1 MSLNARFGEVECLAESHQHLSKESLAGNKPANAVLHKVV--AEEVLDDEDEDDDRSKRRSRG   60 (99)
Q Consensus         1 ~~L~~rFaelEclA~sh~~l~kes~aGnk~an~vLhKvL--lEeLLdDEKdDvdRlps~~~~   60 (99)
                      |+||+||+++||+|+|||||++||++||+|||+||||||  |||||+|||.|+.|+|+..++
T Consensus        93 ~~L~~~fae~e~laeshq~l~kes~~gnk~a~~vl~kvL~qleelLsDMKaDV~RLPatlsr  154 (173)
T PF08074_consen   93 MALNARFAELECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSR  154 (173)
T ss_pred             HHHhhhhhhhhhccchhhhcchhhhCCCCCccHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            689999999999999999999999999999999999999  999999999999999998754

; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00