Psyllid ID: psy10457

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51

NFTSPPDDKLSHQSSLCGEEPCSFEPSGLEPATPHESLSRQSTAEYDPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEEVPQGAPPHQHIASQNSSHNGGSSNGLNGYLNGHGFHNGHNAPNGSHNGMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPPSR

ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEccHHHHHccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHcccEEEcccccccccccccccHHHHHHHHHHcccEEEEcccHHHHHHHcHHHHHHHHHHccccEEcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHcccccc

cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccEEEEcccccEEcHHHHHHHHHHHHHcccccEEEEEcHHHcccccccccccHHHHHHHHHHccEEEEccccccccEEEEEccccEEEEEEEccccEEEEcccHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccccEccccccccccccccHHHHHHHHHHccccccccccccccccccccccHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHccccc

nftsppddklshqsslcgeepcsfepsglepatpheslsrqstaeydpgysaRVDFALKLGYTEDLVQTALnklgpnpshNELLAELIKLGaqvptsfiqdneqdcmpypqaklrpvvidgsnvamshgnkelfsCIGIKICVDWFRARGHKEITVFvpkwrkescrpdnliknQEVLSELEKDRilvytpsrliggkrlvcydDRFILRLaadtdgivvsndnyrdlclespdfrKVVEDRILMYSfvndrfmppedplgrsgpsldkfltidykqnstgapcpygrkctygskckfnhpergpwphkTVTERLMEHAQKQMSEKRQvnktlscpavpnqyqhqeqqvtvhpqktllsrtrsyapdshpeahgsysnlsqnsdqgapLHQRLQRQlslnpyeevpqgapphqhiasqnsshnggssnglngylnghgfhnghnapngshngmtrnpyeEQKERMRLHYHLASLFPEDQVVAAMqahpgetsAHVLCATILAMFPPSR

nftsppddklshqSSLCGEEPCSFEPSGLEPATPHESLSRQSTAEYDPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEitvfvpkwrkescrpdnliknqevlselekdrilvytpsrliggkrlVCYDDRFILRLaadtdgivvsndnyrdlclespdfrkvVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQnstgapcpygrKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEEVPQGAPPHQHIASQNSSHNGGSSNGLNGYLNGHGFHNGHNAPNGSHNGMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPPSR

NFTSPPDDKLSHQSSLCGEEPCSFEPSGLEPATPHESLSRQSTAEYDPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQQVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEEVPQGAPPHQHIASQnsshnggssnglngylnghgfhnghnapngSHNGMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPPSR

************************************************GYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFM*************DKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFN***********************************************************************************************************************************************************************LHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMF****

******************************************************DFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKL*************************PVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWR*************EVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLT****************************************************************************************************************************************************************************************************YHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPP**

*******************************************AEYDPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLME*************KTLSCPAVPNQYQHQEQQVTVHPQKTLLSRT******************************RLQRQLSLNPYEEVPQGAPPHQHIASQNSSHNGGSSNGLNGYLNGHGFHNGHNAPNGSHNGMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPPSR

**********************************************DPGYSARVDFALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQ******************AKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQNSTGAPCPYGRKCTYGSKCKFNHPE***********************************************************************************************SLN*******GAPPHQHIASQNSSHNGGSSNGLNGYLNGHGFHNGHNAPNGSHNGM*RNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSAHVLCATILAMFPPS*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		508	2.2.26 [Sep-21-2011]
Q9C0D7		883	Probable ribonuclease ZC3	yes	N/A	0.557	0.320	0.526	4e-91
Q5DTV4		884	Probable ribonuclease ZC3	yes	N/A	0.515	0.296	0.555	6e-91
Q5HYM0		825	Probable ribonuclease ZC3	no	N/A	0.570	0.351	0.501	1e-89
Q5D1E8		599	Ribonuclease ZC3H12A OS=H	no	N/A	0.509	0.432	0.515	1e-81
A0JPN4		596	Ribonuclease ZC3H12A OS=R	no	N/A	0.509	0.434	0.515	3e-81
Q5D1E7		596	Ribonuclease ZC3H12A OS=M	no	N/A	0.509	0.434	0.508	2e-80
A6QQJ8		583	Ribonuclease ZC3H12A OS=B	no	N/A	0.517	0.451	0.515	3e-80
A2A288		527	Probable ribonuclease ZC3	no	N/A	0.602	0.580	0.465	4e-75
Q8BIY3		533	Probable ribonuclease ZC3	no	N/A	0.614	0.585	0.443	4e-74
Q5ZLE9		931	NEDD4-binding protein 1 O	no	N/A	0.305	0.166	0.518	1e-44

>sp\|Q9C0D7\|ZC12C_HUMAN Probable ribonuclease ZC3H12C OS=Homo sapiens GN=ZC3H12C PE=1 SV=2	Back alignment and function desciption

 Score =  335 bits (860), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 166/315 (52%), Positives = 218/315 (69%), Gaps = 32/315 (10%)

Query: 29  LEPATPHESLSRQSTAEYDPG----YSARVDFALKLGYTEDLVQTALNKLGPNPSHNELL 84
           L+   P ES +    A+  P     Y  +++FALKLGY+E+ VQ  LNKLG +   N++L
Sbjct: 137 LQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGYSEEQVQLVLNKLGTDALINDIL 196

Query: 85  AELIKLGAQVP--------------TSFIQDNE-----QDCMPYPQAKLRPVVIDGSNVA 125
            EL+KLG +                TS ++        Q+ +      LRP+VIDGSNVA
Sbjct: 197 GELVKLGNKSEADQTVSTINTITRETSSLESQRSESPMQEIVTDDGENLRPIVIDGSNVA 256

Query: 126 MSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDR 185
           MSHGNKE+FSC GIK+ VDWF  RGHK+ITVFVP WRKE  RPD LI +QE+L +LEK++
Sbjct: 257 MSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPDALITDQEILRKLEKEK 316

Query: 186 ILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILM 245
           ILV+TPSR + G+R+VCYDDRFI++LA ++DGI+VSNDNYRDL  E P+++K +++R+LM
Sbjct: 317 ILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLM 376

Query: 246 YSFVNDRFMPPEDPLGRSGPSLDKFL-----TIDYKQNSTGAPCPYGRKCTYGSKCKFNH 300
           YSFVND+FMPP+DPLGR GPSLD FL       ++K+     PCPYG+KCTYG KCK+ H
Sbjct: 377 YSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQ----PCPYGKKCTYGHKCKYYH 432

Query: 301 PERGPWPHKTVTERL 315
           PERG  P ++V + L
Sbjct: 433 PERGSQPQRSVADEL 447

May function as RNase and regulate the levels of target RNA species.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp\|Q5DTV4\|ZC12C_MOUSE Probable ribonuclease ZC3H12C OS=Mus musculus GN=Zc3h12c PE=2 SV=2	Back alignment and function description

>sp\|Q5HYM0\|ZC12B_HUMAN Probable ribonuclease ZC3H12B OS=Homo sapiens GN=ZC3H12B PE=2 SV=2	Back alignment and function description

>sp\|Q5D1E8\|ZC12A_HUMAN Ribonuclease ZC3H12A OS=Homo sapiens GN=ZC3H12A PE=1 SV=1	Back alignment and function description

>sp\|A0JPN4\|ZC12A_RAT Ribonuclease ZC3H12A OS=Rattus norvegicus GN=Zc3h12a PE=2 SV=1	Back alignment and function description

>sp\|Q5D1E7\|ZC12A_MOUSE Ribonuclease ZC3H12A OS=Mus musculus GN=Zc3h12a PE=1 SV=2	Back alignment and function description

>sp\|A6QQJ8\|ZC12A_BOVIN Ribonuclease ZC3H12A OS=Bos taurus GN=ZC3H12A PE=2 SV=1	Back alignment and function description

>sp\|A2A288\|ZC12D_HUMAN Probable ribonuclease ZC3H12D OS=Homo sapiens GN=ZC3H12D PE=2 SV=3	Back alignment and function description

>sp\|Q8BIY3\|ZC12D_MOUSE Probable ribonuclease ZC3H12D OS=Mus musculus GN=Zc3h12d PE=2 SV=2	Back alignment and function description

>sp\|Q5ZLE9\|N4BP1_CHICK NEDD4-binding protein 1 OS=Gallus gallus GN=N4BP1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		508
91087973		606	PREDICTED: similar to CG10889 CG10889-PA	0.893	0.749	0.488	1e-134
270012051		539	hypothetical protein TcasGA2_TC006151 [T	0.893	0.842	0.488	1e-134
66509467		652	PREDICTED: probable ribonuclease ZC3H12C	0.901	0.702	0.486	1e-126
340711413		675	PREDICTED: hypothetical protein LOC10065	0.893	0.672	0.469	1e-125
350405887		675	PREDICTED: hypothetical protein LOC10074	0.899	0.677	0.467	1e-125
347965628		637	AGAP001272-PA [Anopheles gambiae str. PE	0.897	0.715	0.461	1e-124
328720668		561	PREDICTED: probable ribonuclease ZC3H12C	0.891	0.807	0.5	1e-120
193657095		632	PREDICTED: probable ribonuclease ZC3H12C	0.891	0.716	0.5	1e-120
322785029		679	hypothetical protein SINV_02544 [Solenop	0.704	0.527	0.542	1e-120
383858862		675	PREDICTED: probable ribonuclease ZC3H12C	0.724	0.545	0.548	1e-120

>gi\|91087973\|ref\|XP_973205.1\| PREDICTED: similar to CG10889 CG10889-PA [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/559 (48%), Positives = 342/559 (61%), Gaps = 105/559 (18%)

Query: 13  QSSLCGEEPCSFEPSGLEPATP--HESLSRQST-------AEY--------DPGYSARVD 55
           Q S+ GE+  S++       TP  H+ +SR ++       AEY         PGY+ARV+
Sbjct: 85  QRSVAGED-SSYDSDYEADPTPSRHQDVSRTASDTLAAEYAEYVETTPSDASPGYTARVE 143

Query: 56  FALKLGYTEDLVQTALNKLGPNPSHNELLAELIKLGAQVPTSFIQDNEQDCMPYPQAK-- 113
           FALKLGYTE LVQ AL KLGP+P+ NELLAELIKLGAQ   S      +  +     +  
Sbjct: 144 FALKLGYTEKLVQAALQKLGPSPAQNELLAELIKLGAQKGGSCDSSPSESTLDVTDVQGE 203

Query: 114 ------LRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCR 167
                 LRP+VIDGSNVAMSHGNKE+FSC GIKICVDWF++RGHK+ITVFVPKWRKE+ R
Sbjct: 204 QAGGQALRPIVIDGSNVAMSHGNKEIFSCRGIKICVDWFKSRGHKDITVFVPKWRKEAPR 263

Query: 168 PDNLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRD 227
           PDN +++Q++L+ELEK+R+LV+TPSRL+GGKR+VCYDDR+ILRLAA+ DGIVVSNDNYRD
Sbjct: 264 PDNPVRDQDILAELEKERLLVFTPSRLVGGKRMVCYDDRYILRLAAEVDGIVVSNDNYRD 323

Query: 228 LCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTIDYKQNSTGAPCPYG 287
           LC ES +FRKVVE+RILMYSFVNDRFMPP+DPLGRSGP+LD FL    K+     PCPY 
Sbjct: 324 LCQESAEFRKVVEERILMYSFVNDRFMPPDDPLGRSGPTLDNFLRTQPKKGDPPPPCPYA 383

Query: 288 RKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQ 347
           +KCTYG+KCK++HPERGP+PHK+VTERL EHAQ+ +                   Q +E 
Sbjct: 384 KKCTYGNKCKYHHPERGPFPHKSVTERLSEHAQRHL-------------------QAREG 424

Query: 348 QVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAP------LHQRLQRQLSLNP 401
            +    +KT L RTRS  P      H   S      + GA       LH++LQRQL+LNP
Sbjct: 425 DI----RKTPLGRTRSNVPPPKEVQHVVVSKSRSVDNVGAAPPQPENLHRKLQRQLTLNP 480

Query: 402 -----------------------------------YEEVPQGAPPHQHIASQNSSHNGGS 426
                                              Y   P  AP H+H+   +S     S
Sbjct: 481 ASDPRLVRRYVAPQPPYMNWDMHQHVTRIASAPDSYRPWPPAAPTHRHMQRMSSC----S 536

Query: 427 SNGLNGYLNGHGFHNGHNAPNGSHNGMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQA 486
              LN +            P  S  G    P  ++  R +LHYHLA++FPE+QV  AM+ 
Sbjct: 537 DPQLNVW-----------PPLWSQGGPPPPPTLQEDARRKLHYHLAAIFPEEQVTQAMRM 585

Query: 487 HPGETSAHVLCATILAMFP 505
           +P ET+   +CA IL+MFP
Sbjct: 586 YPDETNPQKICAAILSMFP 604

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|270012051\|gb\|EFA08499.1\| hypothetical protein TcasGA2_TC006151 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|66509467\|ref\|XP_397264.2\| PREDICTED: probable ribonuclease ZC3H12C-like isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|340711413\|ref\|XP_003394270.1\| PREDICTED: hypothetical protein LOC100650357 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350405887\|ref\|XP_003487583.1\| PREDICTED: hypothetical protein LOC100741497 [Bombus impatiens]	Back alignment and taxonomy information

>gi\|347965628\|ref\|XP_321880.5\| AGAP001272-PA [Anopheles gambiae str. PEST] gi\|347965630\|ref\|XP_003435796.1\| AGAP001272-PB [Anopheles gambiae str. PEST] gi\|333470422\|gb\|EAA43225.5\| AGAP001272-PA [Anopheles gambiae str. PEST] gi\|333470423\|gb\|EGK97617.1\| AGAP001272-PB [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|328720668\|ref\|XP_003247098.1\| PREDICTED: probable ribonuclease ZC3H12C-like isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|193657095\|ref\|XP_001945940.1\| PREDICTED: probable ribonuclease ZC3H12C-like isoform 1 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|322785029\|gb\|EFZ11787.1\| hypothetical protein SINV_02544 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|383858862\|ref\|XP_003704918.1\| PREDICTED: probable ribonuclease ZC3H12C-like [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		508
UNIPROTKB\|D4ACQ4		835	RGD1560891 "Protein RGD1560891	0.417	0.253	0.622	1.5e-93
UNIPROTKB\|E1BV30		837	ZC3H12B "Uncharacterized prote	0.417	0.253	0.622	8.7e-91
FB\|FBgn0038769		540	CG10889 [Drosophila melanogast	0.742	0.698	0.454	9e-90
UNIPROTKB\|F1RTN0		825	ZC3H12B "Uncharacterized prote	0.598	0.368	0.513	2.6e-89
UNIPROTKB\|E9PAJ6		836	ZC3H12B "Probable ribonuclease	0.598	0.363	0.507	1e-86
UNIPROTKB\|Q5HYM0		825	ZC3H12B "Probable ribonuclease	0.598	0.368	0.507	1e-86
UNIPROTKB\|E1BN91		825	ZC3H12B "Uncharacterized prote	0.598	0.368	0.507	3.5e-86
RGD\|1565078		883	Zc3h12c "zinc finger CCCH type	0.641	0.369	0.478	6.5e-83
UNIPROTKB\|B4DR47		884	ZC3H12C "Probable ribonuclease	0.570	0.328	0.506	1.7e-82
UNIPROTKB\|E9PP00		852	ZC3H12C "Probable ribonuclease	0.570	0.340	0.506	1.7e-82

UNIPROTKB\|D4ACQ4 RGD1560891 "Protein RGD1560891" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 726 (260.6 bits), Expect = 1.5e-93, Sum P(4) = 1.5e-93
 Identities = 135/217 (62%), Positives = 169/217 (77%)

Query:   114 LRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIK 173
             LRPVVIDGSNVAMSHGNKE FSC GI++ VDWF  +GHK+ITVFVP WRKE  RPD  I 
Sbjct:   189 LRPVVIDGSNVAMSHGNKEEFSCRGIQLAVDWFLDKGHKDITVFVPAWRKEQSRPDAPIT 248

Query:   174 NQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESP 233
             +Q++L +LEK++ILV+TPSR + G+R+VCYDDRFI++LA D+DGI+VSNDNYRDL +E P
Sbjct:   249 DQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFDSDGIIVSNDNYRDLQVEKP 308

Query:   234 DFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTI-DYKQNSTGAPCPYGRKCTY 292
             +++K +E+R+LMYSFVND+FMPP+DPLGR GPSL+ FL            PCPYG+KCTY
Sbjct:   309 EWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGKKCTY 368

Query:   293 GSKCKFNHPERGPWPHKTVTERLMEHAQ----KQMSE 325
             G KCK+ HPER   P ++V + L   A+    K MSE
Sbjct:   369 GHKCKYYHPERANQPQRSVADELRISAKLSTVKIMSE 405

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB\|E1BV30 ZC3H12B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0038769 CG10889 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RTN0 ZC3H12B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PAJ6 ZC3H12B "Probable ribonuclease ZC3H12B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5HYM0 ZC3H12B "Probable ribonuclease ZC3H12B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BN91 ZC3H12B "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1565078 Zc3h12c "zinc finger CCCH type containing 12C" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DR47 ZC3H12C "Probable ribonuclease ZC3H12C" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PP00 ZC3H12C "Probable ribonuclease ZC3H12C" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C0D7	ZC12C_HUMAN	3, ., 1, ., -, ., -	0.5269	0.5570	0.3204	yes	N/A
Q5DTV4	ZC12C_MOUSE	3, ., 1, ., -, ., -	0.5551	0.5157	0.2963	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		508
pfam11977		155	pfam11977, RNase_Zc3h12a, Zc3h12a-like Ribonucleas	2e-78

>gnl\|CDD\|221353 pfam11977, RNase_Zc3h12a, Zc3h12a-like Ribonuclease NYN domain	Back alignment and domain information

 Score =  242 bits (619), Expect = 2e-78
 Identities = 93/157 (59%), Positives = 123/157 (78%), Gaps = 2/157 (1%)

Query: 113 KLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLI 172
           KLRP+VIDGSNVAMSHGNKE FSC G+ + VD+FR RGH+ ITVFVP WR +    D  +
Sbjct: 1   KLRPIVIDGSNVAMSHGNKEFFSCRGLLLAVDYFRKRGHEVITVFVPNWRYK--ARDGKV 58

Query: 173 KNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLES 232
            +Q  L  L +  ++V+TPSR + G+R+V YDDRFIL LA +TDG++VSNDN+RDL  ES
Sbjct: 59  TDQHELERLIRLGLIVFTPSRTLDGRRIVSYDDRFILELAEETDGVIVSNDNFRDLADES 118

Query: 233 PDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDK 269
           P+++ ++E+R+LMY+FV D+FM P+DPLGR GPSL+ 
Sbjct: 119 PEWKDIIEERLLMYTFVGDKFMLPDDPLGRLGPSLND 155

This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes. It has been suggested that this domain belongs to the PIN domain superfamily. This domain has also been identified as part of the NYN domain family. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		508
KOG3777\|consensus		443		100.0
PF11977		155	RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai	100.0
PF14626		122	RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN dom	98.45
PF05991		166	NYN_YacP: YacP-like NYN domain; InterPro: IPR01029	96.92
PF14608		19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.86
cd00008		240	53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas	92.39
smart00475		259	53EXOc 5'-3' exonuclease.	91.49
PF07499		47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	91.26
PRK14976		281	5'-3' exonuclease; Provisional	90.92
KOG3740\|consensus		706		90.85
PF00642		27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	88.46
COG3688		173	Predicted RNA-binding protein containing a PIN dom	88.28
PF09288		55	UBA_3: Fungal ubiquitin-associated domain ; InterP	81.65

>KOG3777\|consensus	Back alignment and domain information

Probab=100.00  E-value=7.3e-59  Score=484.01  Aligned_cols=374  Identities=39%  Similarity=0.625  Sum_probs=288.1

Q ss_pred             CCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcEE
Q psy10457        109 YPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRILV  188 (508)
Q Consensus       109 ~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~Lv  188 (508)
                      .....+|||||||+||||+||++..|+|+||.++++||.++||++++||+|.||++..+++.      +|.+|+++.+++
T Consensus         7 ~~d~~~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~rd~tv~~~~~r~e~~~p~~------~l~~l~~~~~~~   80 (443)
T KOG3777|consen    7 QQDEYLRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGHRDITVLVPSWRKEATRPDA------ILRELEEKKILV   80 (443)
T ss_pred             cccccccCceeeccchhhcccchhheecccceeehhhhhhhcccCcchhchhhhhcCCchHH------HHHHHHhccccc
Confidence            35678999999999999999999999999999999999999999999999999999875543      899999999999


Q ss_pred             ecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCChh
Q psy10457        189 YTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLD  268 (508)
Q Consensus       189 ~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~Ld  268 (508)
                      |||++.+.|+|.+||||||++++|.+.+|+||+||+|||++-+.|   ++|++|++||+|++++|||||||+||+||+|+
T Consensus        81 ftp~~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~~---~~~~e~ll~~s~~~~~~mpPDdplgr~GPsl~  157 (443)
T KOG3777|consen   81 FTPDRSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILESP---RFVEERLLSYSFANSKFMPPDDPLGREGPSLD  157 (443)
T ss_pred             cCCChhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhcc---cchhhHHHHhhhhhcccCCCCCcccccCcchh
Confidence            999999999999999999999999999999999999999999999   78999999999999999999999999999999


Q ss_pred             hhhccccCCCCC-CCCCCCCCcccCCCcccccCCCCCCCCchhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccccc
Q psy10457        269 KFLTIDYKQNST-GAPCPYGRKCTYGSKCKFNHPERGPWPHKTVTERLMEHAQKQMSEKRQVNKTLSCPAVPNQYQHQEQ  347 (508)
Q Consensus       269 ~fLr~~~~~~~~-~~~cpy~~kctyg~kck~~hp~r~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  347 (508)
                      .||++++....+ +++||||||||||.|||||||+++++++++|++++++.++....+    .++.+....       ..
T Consensus       158 ~fL~k~p~~~aq~~q~Cpygkkctyg~kck~~h~~~~~~~qr~v~~e~~a~~~~~~~k----t~~~g~~~~-------~~  226 (443)
T KOG3777|consen  158 NFLSKKPLLWAQNKQPCPYGKKCTYGGKCKFYHPEIARGPQRSVLDEFTASNKLETCK----TSNQGGLAE-------MV  226 (443)
T ss_pred             hhhhhccchhhhcccCCCcccccCCCCceeeccccccccccccccccccccccccccc----ccchhhhhh-------hh
Confidence            999999987776 999999999999999999999999999999999999976654100    111111111       12


Q ss_pred             ccccccccccccccccCCCCCCCcccCccCccCCCCCCCCchhhHHhhhcCCCCCCC--CCCCCCCc------ccccccc
Q psy10457        348 QVTVHPQKTLLSRTRSYAPDSHPEAHGSYSNLSQNSDQGAPLHQRLQRQLSLNPYEE--VPQGAPPH------QHIASQN  419 (508)
Q Consensus       348 ~~~~~~~~~~l~rt~s~~~~~~~~~~~~~~~~~~~~~~~~n~h~klqrq~~l~p~~~--~~~~~~~~------~~~~~~~  419 (508)
                      .++...+...++||++|.++...++..  .-...++....+.+++|++|.. +..+.  ..+..++.      ...++..
T Consensus       227 ~~~~~~~~~~~~~~~~n~veq~s~~~~--~v~~~~e~~~~~r~k~L~~q~~-p~~~~~~~~~~q~p~~~~s~~sp~~~~~  303 (443)
T KOG3777|consen  227 RGNSENSGEMTSRTRSNPVEQVSQLPS--SVGGDSEESLPNRRKPLNRQQE-PGGRNQFNTQTQPPGMGRSYASPSHSGD  303 (443)
T ss_pred             hhhcccccccchhhhhcHHHHHhhccc--cccCcccccccccCcccccccc-CccccccceeccCCCCCccccCCCCCCC
Confidence            346667888899999998887766554  2234455667899999999976 44443  11122111      0001111


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C--CCCCCCchhHHHHHHHHHHhhcCCChHHHHHHHHhCCCCCCH
Q psy10457        420 SSHNGGSSNGLNGYLNGHGFHNGHNAPNGSH----N--GMTRNPYEEQKERMRLHYHLASLFPEDQVVAAMQAHPGETSA  493 (508)
Q Consensus       420 ~~~~~~~s~~~~~~~~~~~~~h~~~a~~~~~----~--~~~~~~~~~~~~r~~l~~hL~~iFp~~~V~avm~~~P~et~~  493 (508)
                      ..+-|+.+.+...+...+.--|.|-++.+..    +  +.....-..+..|+++-+++-+.||.+.+.++-..+|.+++.
T Consensus       304 ~f~~r~~~~p~~~~~~p~~~~~~~~~p~~~~~eq~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  383 (443)
T KOG3777|consen  304 NFLPRAPSMPITVPSVPMPPPAGHPPPIGPSGEQKSEELEVGDNGRKHSERALLRLSQGSPLPRLLLLVTDNGRPKEADA  383 (443)
T ss_pred             cccCcCccCCcCCCCCCCCCCCCCCCCCCcchhhhhhhhccccCCCcccccccccCCccCcccccccccccccccccccc
Confidence            2233322222211111121222222222221    1  111122256778999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q psy10457        494 HVLCATILAMFPPS  507 (508)
Q Consensus       494 ~~ica~Il~~~~~~  507 (508)
                      ..+|  +.+.++++
T Consensus       384 ~d~~--~~~~~~~~  395 (443)
T KOG3777|consen  384 NDSS--RELLIPPG  395 (443)
T ss_pred             ccch--hcccCCCC
Confidence            9998  55555553

>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []	Back alignment and domain information

>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain	Back alignment and domain information

>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana	Back alignment and domain information

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	Back alignment and domain information

>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes	Back alignment and domain information

>smart00475 53EXOc 5'-3' exonuclease	Back alignment and domain information

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction	Back alignment and domain information

>PRK14976 5'-3' exonuclease; Provisional	Back alignment and domain information

>KOG3740\|consensus	Back alignment and domain information

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]	Back alignment and domain information

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		508
3v33_A		223	Crystal Structure Of Mcpip1 Conserved Domain With Z		2e-74
3v32_B		185	Crystal Structure Of Mcpip1 N-Terminal Conserved Do		3e-63

>pdb|3V33|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With Zinc-Finger Motif Length = 223

Back alignment and structure

Iteration: 1

Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 131/206 (63%), Positives = 163/206 (79%), Gaps = 9/206 (4%) Query: 112 AKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNL 171 + LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF RGH +ITVFVP WRKE RPD Sbjct: 22 SDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVP 81 Query: 172 IKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLE 231 I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL E Sbjct: 82 ITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE 141 Query: 232 SPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKF-----LTIDYKQNSTGAPCPY 286 ++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD F LT+++++ PCPY Sbjct: 142 RQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHRKQ----PCPY 197 Query: 287 GRKCTYGSKCKFNHPERGPWPHKTVT 312 GRKCTYG KC+F HPER P ++V Sbjct: 198 GRKCTYGIKCRFFHPERPSCPQRSVA 223

PyMOL of 3v33

>pdb|3V32|B Chain B, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain Length = 185

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		508
3v33_A		223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	4e-91
3v32_B		185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	2e-73
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223	Back alignment and structure

 Score =  276 bits (707), Expect = 4e-91
 Identities = 130/203 (64%), Positives = 157/203 (77%), Gaps = 1/203 (0%)

Query: 110 PQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPD 169
             + LRPVVIDGSNVAMSHGNKE+FSC GI + V+WF  RGH +ITVFVP WRKE  RPD
Sbjct: 20  EGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPD 79

Query: 170 NLIKNQEVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLC 229
             I +Q +L ELEK +ILV+TPSR +GGKR+VCYDDRFI++LA ++DGIVVSND YRDL 
Sbjct: 80  VPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQ 139

Query: 230 LESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSLDKFLTID-YKQNSTGAPCPYGR 288
            E  ++++ +E+R+LMYSFVND+FMPP+DPLGR GPSLD FL            PCPYGR
Sbjct: 140 GERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHRKQPCPYGR 199

Query: 289 KCTYGSKCKFNHPERGPWPHKTV 311
           KCTYG KC+F HPER   P ++V
Sbjct: 200 KCTYGIKCRFFHPERPSCPQRSV 222

PyMOL of 3v33

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		508
3v33_A		223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	100.0
3v32_B		185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	100.0
4g26_A		501	Pentatricopeptide repeat-containing protein AT2G3	99.68
3ix7_A		134	Uncharacterized protein TTHA0540; unknown function	90.42
1ul1_X		379	Flap endonuclease-1; protein complex, DNA-binding	87.66
1a76_A		326	Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea	82.19
1exn_A		290	5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent	81.17
1ixs_A		62	Holliday junction DNA helicase RUVA; heterodimeric	80.55
2d9m_A		69	Zinc finger CCCH-type domain containing protein 7A	80.47

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=5.7e-79  Score=588.36  Aligned_cols=205  Identities=63%  Similarity=1.144  Sum_probs=160.3

Q ss_pred             CCCCCCCCcEEEeccchhhhcCCCCccchHHHHHHHHHHHHcCCceEEEEecccccccCCCCCCCChHHHHHHHHHCCcE
Q psy10457        108 PYPQAKLRPVVIDGSNVAMSHGNKELFSCIGIKICVDWFRARGHKEITVFVPKWRKESCRPDNLIKNQEVLSELEKDRIL  187 (508)
Q Consensus       108 ~~~~~~lRpIVIDGSNVAmshG~~k~FS~rGI~iAV~yF~~RGh~~VvVFVP~~Rk~~~r~d~~i~d~~iL~eL~k~g~L  187 (508)
                      .+..+.+|+|||||+||||+||+++.|||+||.+||+||++|||++|+||+|+||++..+++.+++|+++|.+|+++|+|
T Consensus        18 ~~~~~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L   97 (223)
T 3v33_A           18 EKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKIL   97 (223)
T ss_dssp             -----CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHTTTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCE
T ss_pred             cCCcccCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCE
Confidence            34678999999999999999999999999999999999999999989999999999887788889999999999999999


Q ss_pred             EecCCcccCCCcccccchHHHHHHHHhCCcEEEeCCcchhhhhcChhHHHHHhcceeeeEEeCCcccCCCCCCCCCCCCh
Q psy10457        188 VYTPSRLIGGKRLVCYDDRFILRLAADTDGIVVSNDNYRDLCLESPDFRKVVEDRILMYSFVNDRFMPPEDPLGRSGPSL  267 (508)
Q Consensus       188 v~TPSr~v~Gkr~~syDDryILklA~e~dGvIVSNDnYRD~~~E~Pe~K~~IeeRlL~YTFvgD~FmPPdDPLGR~GP~L  267 (508)
                      ++||++++.|++++||||+|||++|.++||+|||||+||||+.++|+||+||++|+|+|||+||+||||||||||+||+|
T Consensus        98 ~~TPs~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~e~p~~k~~Ie~rlI~ytFv~D~FmppdDplgR~Gp~l  177 (223)
T 3v33_A           98 VFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSL  177 (223)
T ss_dssp             EEECEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHTTCHHHHHHHHHHEECCEEETTEEECCSSTTCTTSCCH
T ss_pred             EECCCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHhhCHHHHHHHHhCeeeEEEECCEEeCCCCcccCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCCCCC-CCCCCCCCcccCCCcccccCCCCCCCCchhHH
Q psy10457        268 DKFLTIDYKQNST-GAPCPYGRKCTYGSKCKFNHPERGPWPHKTVT  312 (508)
Q Consensus       268 d~fLr~~~~~~~~-~~~cpy~~kctyg~kck~~hp~r~~~~~~~v~  312 (508)
                      ++|||+++..++. +|+||||||||||+|||||||||++++|+|||
T Consensus       178 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (223)
T 3v33_A          178 DNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVA  223 (223)
T ss_dssp             HHHTBSCC--------------------------------------
T ss_pred             HHHhccCCCCcccCCCCCCCCcccccCCcceecCCccCCccccccC
Confidence            9999999988875 99999999999999999999999999999996

PyMOL of 3v33

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A	Back alignment and structure

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A	Back alignment and structure

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}	Back alignment and structure

>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2	Back alignment and structure

>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A	Back alignment and structure

>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A	Back alignment and structure

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1	Back alignment and structure

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		508
d1cmwa2		164	5' to 3' exonuclease domain of DNA polymerase Taq	94.68
d1xo1a2		167	T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]	93.03
d1tfra2		169	T4 RNase H {Bacteriophage T4 [TaxId: 10665]}	90.64
d1ttea1		55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	83.11

>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: 5' to 3' exonuclease domain of DNA polymerase Taq
species: Thermus aquaticus [TaxId: 271]

Probab=94.68  E-value=0.11  Score=44.75  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=57.3

Q ss_pred             CCcEEEeccchhhh--cCC-----CCccch---HHHHHHHHHHHHcCCceEEEEe----cccccccC------CCCCCCC
Q psy10457        114 LRPVVIDGSNVAMS--HGN-----KELFSC---IGIKICVDWFRARGHKEITVFV----PKWRKESC------RPDNLIK  173 (508)
Q Consensus       114 lRpIVIDGSNVAms--hG~-----~k~FS~---rGI~iAV~yF~~RGh~~VvVFV----P~~Rk~~~------r~d~~i~  173 (508)
                      -+.++|||+|+.+.  ++.     .+...+   .|....+..+.+.....++|+.    +.||++.-      |...+-.
T Consensus         3 ~~~lLIDg~~l~~R~~~a~~~~~~~~g~~~~~i~gf~~~l~~~~~~~~~~~~v~~d~~~~~~R~~l~p~YK~~R~~~~~~   82 (164)
T d1cmwa2           3 GRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPED   82 (164)
T ss_dssp             EEEEEEETTHHHHHHHTSSTTCBCTTSCBCHHHHHHHHHHHHHHHHCCSEEEEECCCSSSCTTGGGGSTTTSCCCCCCSS
T ss_pred             CeEEEEeChHHHHHHHHcCCcccCCCCCeeHHHHHHHHHHHHHHhcCCceEEEEEecccccchhhhhhhhhhccccCchh
Confidence            35689999999873  332     122232   3333333333333333444444    45765531      1111111


Q ss_pred             h---H-HHHHHHHHCCcEEecCCcccCCCcccccchHHHHHHHHhC---C--cEEEeCCcchhhhh
Q psy10457        174 N---Q-EVLSELEKDRILVYTPSRLIGGKRLVCYDDRFILRLAADT---D--GIVVSNDNYRDLCL  230 (508)
Q Consensus       174 d---~-~iL~eL~k~g~Lv~TPSr~v~Gkr~~syDDryILklA~e~---d--GvIVSNDnYRD~~~  230 (508)
                      .   . .+...+...|+.++...+        ..+|=.|-.+|...   +  .+|||+|.  |+.+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~~~--------~EADDvIa~la~~~~~~~~~v~IvS~Dk--D~~Q  138 (164)
T d1cmwa2          83 FPRQLALIKELVDLLGLARLEVPG--------YEADDVLASLAKKAEKEGYEVRILTADK--DLYQ  138 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCTT--------SCHHHHHHHHHHHHHHTTEEEEEECSSG--GGGG
T ss_pred             HHHHHHHHHHHHhhcCceEEEecC--------cchHHHHHHHHHHhccccceEEEecCCC--ChHH
Confidence            1   1 223445677887776555        57888888877632   3  38999995  6655

PyMOL of d1cmwa2

>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}	Back information, alignment and structure

>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure