Psyllid ID: psy10465

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MRHANKLSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSDYKNV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccEEEEEEcccEEEEHHHHHHHHcccccccccccccEEEEEccccccccccHHHHHHHHHHHccccccccHHHEEEcccccccccccccccccccccccccccEEEEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccEEEEEEccccEEHHHHHHHHcccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHcccccHHHHHHccccccEEcccHHHHcccccEEEEEccccccEEEEEEEEccEEEEEccccccccEccccccccccccccccccccccccccHHcccccEEEEEEccHHHHHcc
Coil and Loop (DISEMBL)
mrhanklsHQDLEQIRRDITSRLWFTYrkgfvpigdsglttdkgwgcmlRCGQMVIAQALLFLHLGrdwqwnvnsKEEAYLKILKMFedrrtapysiHQIALTgasegkavgewfgpNTVAQVLRKLakyddwssIVFHVALDNTLVVNQVKKLCttnkrassnpqwqplvlviplrlgiqdinpvyINGIkkcyalpispvyDMVKILSSTynmqtpryeftfpqslgviggkpnhALYFIGYVgndvifldphtnqnigcvydkeqdsekkldstyhcpqasrlhilhmdpsiavvsqrsysdyknv
Flexible Loop (DISEMBL)
mrhanklshqdlEQIRRDITSRLWFTYRKgfvpigdsglttDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCttnkrassnpqwqplVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASrlhilhmdpsiavvsqrsysdyknv
Low Complexity Region (SEG)
MRHANKLSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSDYKNV
Disordered region (IsUnstruct)
**************IRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYD************YHCPQASRLHILHMDPSIAV************
Disordered Region (DISOPRED)
*********QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSDYKNV
Disordered Region (DISEMBL)
**********DLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKE********STYHCPQASRLHILHMDPSIAVVS**********
Disordered Region (DISPRO)
****NKLSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRHANKLSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSDYKNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q640G7	384	Cysteine protease ATG4B O	N/A	N/A	0.851	0.684	0.469	6e-78
Q6PZ05	398	Cysteine protease ATG4A O	yes	N/A	0.818	0.635	0.448	2e-76
Q8WYN0	398	Cysteine protease ATG4A O	yes	N/A	0.818	0.635	0.454	3e-75
Q8C9S8	396	Cysteine protease ATG4A O	yes	N/A	0.818	0.638	0.442	5e-75
Q5R699	398	Cysteine protease ATG4A O	yes	N/A	0.818	0.635	0.451	3e-74
Q6DG88	394	Cysteine protease ATG4B O	yes	N/A	0.822	0.644	0.460	1e-73
Q6PZ02	393	Cysteine protease ATG4B O	yes	N/A	0.822	0.646	0.458	2e-73
Q8BGE6	393	Cysteine protease ATG4B O	no	N/A	0.822	0.646	0.453	6e-73
Q9Y4P1	393	Cysteine protease ATG4B O	no	N/A	0.822	0.646	0.453	8e-73
Q6PZ03	393	Cysteine protease ATG4B O	no	N/A	0.822	0.646	0.446	1e-71

>sp|Q640G7|ATG4B_XENLA Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1

 Score =  291 bits (744), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 148/315 (46%), Positives = 193/315 (61%), Gaps = 52/315 (16%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           EQ+  DITSRLWFTYR+ F  IG +G T+D GWGCMLRCGQM+ AQAL+  H+GRDW+W+
Sbjct: 40  EQLLNDITSRLWFTYRRNFQAIGGTGPTSDTGWGCMLRCGQMIFAQALICRHVGRDWRWD 99

Query: 73  VNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
               +  YL IL  F D++ + YSIHQIA  G  EGK +G+W+GPNTVAQVLRKLA +D 
Sbjct: 100 KQKPKGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLRKLAVFDQ 159

Query: 133 WSSIVFHVALDNTLVVNQVKKLCTTNKRASSN----------------PQWQPLVLVIPL 176
           WSSI  H+A+DNT+VV+++++LC      SS+                 QW+PLVL+IPL
Sbjct: 160 WSSIAVHIAMDNTVVVDEIRRLCRAGSGESSDAGALSNGYTGDSDPSCAQWKPLVLLIPL 219

Query: 177 RLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPN 236
           RLG+ +IN  YI  +K C                           F  PQSLGVIGG+PN
Sbjct: 220 RLGLSEINEAYIETLKHC---------------------------FMVPQSLGVIGGRPN 252

Query: 237 HALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSI 295
            A YFIGYVG+++I+LDPHT Q    +  +  D     D ++HC     R+H+  +DPSI
Sbjct: 253 SAHYFIGYVGDELIYLDPHTTQ----LSVEPSDCSFIEDESFHCQHPPCRMHVSEIDPSI 308

Query: 296 AV----VSQRSYSDY 306
           AV     SQ  + D+
Sbjct: 309 AVGFFCSSQEDFEDW 323

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/308 (44%), Positives = 195/308 (63%), Gaps = 55/308 (17%)

Query: 14  QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
           ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W  
Sbjct: 44  KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWEK 103

Query: 74  NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
             ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+
Sbjct: 104 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDE 163

Query: 133 WSSIVFHVALDNTLVVNQVKKLCTTNKRASSNP----------------------QWQPL 170
           W+S+  +V++DNT+V+  +KK+C T   ++  P                       W+PL
Sbjct: 164 WNSLAVYVSMDNTVVIEDIKKMCRTLSLSADTPAERPLESLTASNQSKGPSACCTAWKPL 223

Query: 171 VLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230
           +L++PLRLGI  INPVY++  K+C                           F  PQSLG 
Sbjct: 224 LLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQSLGA 256

Query: 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHIL 289
           +GGKPN+A YFIG++G+++IFLDPHT Q      D E++     D T+HC Q   R++IL
Sbjct: 257 LGGKPNNAYYFIGFLGDELIFLDPHTTQTF---VDTEENGTAD-DQTFHCLQPPQRMNIL 312

Query: 290 HMDPSIAV 297
           ++DPS+A+
Sbjct: 313 NLDPSVAL 320

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 140/308 (45%), Positives = 197/308 (63%), Gaps = 55/308 (17%)

Query: 14  QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
           ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W  
Sbjct: 44  KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEK 103

Query: 74  NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
             ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+
Sbjct: 104 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDE 163

Query: 133 WSSIVFHVALDNTLVVNQVKKLC--------TTNKR-----ASSN---------PQWQPL 170
           W+S+  +V++DNT+V+  +KK+C        T   R      +SN           W+PL
Sbjct: 164 WNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPL 223

Query: 171 VLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230
           +L++PLRLGI  INPVY++  K+C                           F  PQSLG 
Sbjct: 224 LLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQSLGA 256

Query: 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHIL 289
           +GGKPN+A YFIG++G+++IFLDPHT Q      D E++     D T+HC Q+  R++IL
Sbjct: 257 LGGKPNNAYYFIGFLGDELIFLDPHTTQTF---VDTEENGTVN-DQTFHCLQSPQRMNIL 312

Query: 290 HMDPSIAV 297
           ++DPS+A+
Sbjct: 313 NLDPSVAL 320

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8C9S8|ATG4A_MOUSE Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2

 Score =  281 bits (719), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/305 (44%), Positives = 194/305 (63%), Gaps = 52/305 (17%)

Query: 14  QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
           ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W  
Sbjct: 44  KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWER 103

Query: 74  NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
             ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQV++KLA +D+
Sbjct: 104 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVIKKLALFDE 163

Query: 133 WSSIVFHVALDNTLVVNQVKKLCTTNKRASSNP-------------------QWQPLVLV 173
           W+S+  +V++DNT+V+  +KK+C      +++P                    W+PL+L+
Sbjct: 164 WNSLAVYVSMDNTVVIEDIKKMCCVLPVGAADPAGDFLTASNQSRDTSVPCSAWKPLLLI 223

Query: 174 IPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGG 233
           +PLRLGI  INPVY+   K+C                           F  PQSLG +GG
Sbjct: 224 VPLRLGINQINPVYVEAFKEC---------------------------FKMPQSLGALGG 256

Query: 234 KPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHILHMD 292
           KPN+A YFIG++G+++IFLDPHT Q     +   ++S    D T+HC Q+  R+ IL++D
Sbjct: 257 KPNNAYYFIGFLGDELIFLDPHTTQT----FVDIEESGLVDDQTFHCLQSPQRMSILNLD 312

Query: 293 PSIAV 297
           PS+A+
Sbjct: 313 PSVAL 317

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 139/308 (45%), Positives = 196/308 (63%), Gaps = 55/308 (17%)

Query: 14  QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
           ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W  
Sbjct: 44  KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEK 103

Query: 74  NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
             ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+
Sbjct: 104 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDE 163

Query: 133 WSSIVFHVALDNTLVVNQVKKLC--------TTNKR-----ASSN---------PQWQPL 170
           W+S+  +V++DNT+V+  +KK+C        T   R      +SN           W+PL
Sbjct: 164 WNSLAVYVSMDNTVVIEDIKKMCRVLPLGADTAGDRPPDSLTASNLSKGTSAYCSAWKPL 223

Query: 171 VLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230
           +L++PLRLGI  INPVY++  K+C                           F  PQSLG 
Sbjct: 224 LLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQSLGA 256

Query: 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHIL 289
           +GGKPN+A YFIG++G+++IFLDPHT Q      D  ++     D T+HC Q+  R++IL
Sbjct: 257 LGGKPNNAYYFIGFLGDELIFLDPHTTQTF---VDTGENGTVN-DQTFHCLQSPQRMNIL 312

Query: 290 HMDPSIAV 297
           ++DPS+A+
Sbjct: 313 NLDPSVAL 320

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/313 (46%), Positives = 190/313 (60%), Gaps = 59/313 (18%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           + I  D+TSRLWFTYRK F PIG +G T+D GWGCMLRCGQM++ +AL+  HLGRDW+W+
Sbjct: 40  DDILADVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWS 99

Query: 73  VNSKEE-AYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++   Y+ IL  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 100 PGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTT----NKRA---SSNPQ------------------ 166
            WS +  HVA+DNT+V+ ++K+LC      ++ A   S  P+                  
Sbjct: 160 SWSRLAVHVAMDNTVVIEEIKRLCMPWLDFDRGACAVSEEPREMNGDLEGACALAEEETA 219

Query: 167 -WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFP 225
            W+PLVL+IPLRLG+ DIN  YI  +K+C                           F  P
Sbjct: 220 LWKPLVLLIPLRLGLSDINEAYIEPLKQC---------------------------FMMP 252

Query: 226 QSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-AS 284
           QSLGVIGGKPN A YFIG+VG+++I+LDPHT Q      D  +D     D +YHC     
Sbjct: 253 QSLGVIGGKPNSAHYFIGFVGDELIYLDPHTTQP---AVDPSEDGHFP-DDSYHCQHPPC 308

Query: 285 RLHILHMDPSIAV 297
           R+HI  +DPSIA 
Sbjct: 309 RMHICELDPSIAA 321

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ02|ATG4B_CHICK Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/312 (45%), Positives = 188/312 (60%), Gaps = 58/312 (18%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           E+I  D+TSRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 39  EEILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWI 98

Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ + Y  +L  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 99  KGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATFD 158

Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------- 166
            WSS+  H+A+DNT+V+ ++++LC +N     A++ P                       
Sbjct: 159 TWSSLAVHIAMDNTVVMEEIRRLCQSNFSCAGAAACPAVEADVLYNGYPEEAGVRDKLSL 218

Query: 167 WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQ 226
           W+PLVL+IPLRLG+ +IN  YI  +K C                           F  PQ
Sbjct: 219 WKPLVLLIPLRLGLTEINEAYIETLKHC---------------------------FMMPQ 251

Query: 227 SLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASR 285
           SLGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  DS    D ++HC     R
Sbjct: 252 SLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPSDSGCLPDESFHCQHPPCR 307

Query: 286 LHILHMDPSIAV 297
           + I  +DPSIAV
Sbjct: 308 MSIAELDPSIAV 319

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYR+ F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 40  DEILSDVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 99

Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 100 QRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN-----------------------KRASSNPQ-W 167
            WSS+  H+A+DNT+V+ ++++LC  N                          ++ P  W
Sbjct: 160 TWSSLAVHIAMDNTVVMEEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAW 219

Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 220 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 252

Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  DS    D ++HC    SR+
Sbjct: 253 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----ELTDSCFIPDESFHCQHPPSRM 308

Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 309 GIGELDPSIAV 319

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2

 Score =  273 bits (699), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 40  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 99

Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 100 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WSS+  H+A+DNT+V+ ++++LC T+     A++ P                      W
Sbjct: 160 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 219

Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 220 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 252

Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  D     D ++HC     R+
Sbjct: 253 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPTDGCFIPDESFHCQHPPCRM 308

Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 309 SIAELDPSIAV 319

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 185/311 (59%), Gaps = 57/311 (18%)

Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 40  DEILADVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 99

Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L+ F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 100 QRKRQPDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WS++  HVA+DNT+V+  +++LC ++     A + P                      W
Sbjct: 160 TWSALAVHVAMDNTVVMADIRRLCRSSLPCAGAEAFPADSERHCNGFPAGAEGGGRAAPW 219

Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ D+N  Y   +K C                           F  PQS
Sbjct: 220 RPLVLLIPLRLGLADVNAAYAGTLKHC---------------------------FRMPQS 252

Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q      D+        D ++HC     R+
Sbjct: 253 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVAAADR----CPVPDESFHCQHPPGRM 308

Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 309 SIAELDPSIAV 319

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
328707620	402	PREDICTED: cysteine protease ATG4B-like	0.838	0.644	0.641	1e-106
91083193	366	PREDICTED: similar to Autophagy-specific	0.844	0.713	0.589	1e-94
242007959	388	Cysteine protease ATG4A, putative [Pedic	0.844	0.672	0.598	8e-93
332375955	370	unknown [Dendroctonus ponderosae]	0.880	0.735	0.536	9e-93
209969827	405	autophagy-specific gene 4 [Nasonia vitri	0.851	0.649	0.592	7e-92
357620505	383	putative Autophagy-specific protein [Dan	0.883	0.712	0.538	2e-90
406042044	365	autophagy related protein Atg4-like prot	0.844	0.715	0.547	2e-90
380023311	382	PREDICTED: cysteine protease ATG4B-like	0.844	0.683	0.57	2e-88
383861144	384	PREDICTED: cysteine protease ATG4B-like	0.844	0.679	0.58	6e-88
66529516	382	PREDICTED: cysteine protease ATG4B [Apis	0.844	0.683	0.566	1e-87

>gi|328707620|ref|XP_001947296.2| PREDICTED: cysteine protease ATG4B-like isoform 1 [Acyrthosiphon pisum] gi|328707622|ref|XP_003243448.1| PREDICTED: cysteine protease ATG4B-like isoform 2 [Acyrthosiphon pisum] gi|328707624|ref|XP_003243449.1| PREDICTED: cysteine protease ATG4B-like isoform 3 [Acyrthosiphon pisum] gi|328707626|ref|XP_003243450.1| PREDICTED: cysteine protease ATG4B-like isoform 4 [Acyrthosiphon pisum]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/287 (64%), Positives = 223/287 (77%), Gaps = 28/287 (9%)

Query: 11  DLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQ 70
           DL+QIR DI SRLWFTYRKGFV IG++  T+D+GWGCMLRCGQMVI QAL+FLHLGRDW+
Sbjct: 59  DLQQIRNDIQSRLWFTYRKGFVQIGNTNFTSDRGWGCMLRCGQMVIGQALIFLHLGRDWR 118

Query: 71  WNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKY 130
           W+ + ++  YLKIL+MFED+R+APYSIHQIAL G S GK VGEWFGPNT+AQVL+KLA  
Sbjct: 119 WDPDKRDIDYLKILRMFEDKRSAPYSIHQIALMGVSHGKQVGEWFGPNTIAQVLKKLATM 178

Query: 131 DDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQ-WQPLVLVIPLRLGIQDINPVYIN 189
           D+ SS+VFHVALDNTLV+N+VKKLCT  ++ +S+ Q W+PLVLVIPLRLGI  INP Y+ 
Sbjct: 179 DELSSLVFHVALDNTLVINEVKKLCTVMEQTNSSKQIWKPLVLVIPLRLGISAINPAYVQ 238

Query: 190 GIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDV 249
           G+K C                           FTFPQSLGVIGG+PNHALYFIG+VGNDV
Sbjct: 239 GVKMC---------------------------FTFPQSLGVIGGRPNHALYFIGFVGNDV 271

Query: 250 IFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIA 296
           IFLDPHT Q IG + +K+ ++E K+D +YHC Q +RL IL+MDPS+A
Sbjct: 272 IFLDPHTTQQIGMLPNKDIETEHKIDHSYHCQQINRLPILNMDPSLA 318

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083193|ref|XP_972923.1| PREDICTED: similar to Autophagy-specific protein, putative [Tribolium castaneum] gi|270006970|gb|EFA03418.1| hypothetical protein TcasGA2_TC013405 [Tribolium castaneum]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 214/290 (73%), Gaps = 29/290 (10%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIG-DSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRD 68
           Q+L+ IR+DI S++WFTYRK FVPIG D GLTTDKGWGCMLRCGQMV+AQAL+ LHLGRD
Sbjct: 36  QELDTIRQDILSKIWFTYRKNFVPIGGDEGLTTDKGWGCMLRCGQMVLAQALVTLHLGRD 95

Query: 69  WQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
           W W   +K+  YLKIL  F D+R AP+SIHQIA+ G SE K VG+WFGPNTVAQVL+KL 
Sbjct: 96  WVWEPETKDSTYLKILSKFVDKRQAPFSIHQIAMMGVSENKEVGQWFGPNTVAQVLKKLV 155

Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLC-TTNKRASSNPQWQPLVLVIPLRLGIQDINPVY 187
           KYD+WS+I  H+ALDNTL+++ +++LC +      S+  W+PL+L++PLRLG+Q+INP+Y
Sbjct: 156 KYDEWSAIEMHIALDNTLIISDIRELCLSQGSDGCSSGDWKPLLLIVPLRLGLQEINPIY 215

Query: 188 INGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGN 247
            +G+KKC                           F F QSLGVIGGKPN ALYFIG+VG+
Sbjct: 216 ASGLKKC---------------------------FQFKQSLGVIGGKPNLALYFIGHVGD 248

Query: 248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           +VI+LDPHT Q  G V  KE + E +LDSTYHC  ASR++IL MDPS+AV
Sbjct: 249 EVIYLDPHTTQKSGSVESKETEEEIELDSTYHCKYASRINILSMDPSVAV 298

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007959|ref|XP_002424782.1| Cysteine protease ATG4A, putative [Pediculus humanus corporis] gi|212508305|gb|EEB12044.1| Cysteine protease ATG4A, putative [Pediculus humanus corporis]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 216/306 (70%), Gaps = 45/306 (14%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
           +D+  IR DI S+LWFTYRKGFVPIGDSGLT+DKGWGCMLRCGQMV+AQAL+ LHLGRDW
Sbjct: 39  RDVTAIRSDIKSKLWFTYRKGFVPIGDSGLTSDKGWGCMLRCGQMVLAQALVCLHLGRDW 98

Query: 70  QWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 129
           +W  +SKE  YL+ILKMFED +TA YSIHQIAL G SEGK VG+WFGPNTV QVL+KL+ 
Sbjct: 99  RWKKDSKEPEYLRILKMFEDTKTATYSIHQIALMGVSEGKDVGQWFGPNTVTQVLKKLSV 158

Query: 130 YDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA------------------SSNPQWQPLV 171
           YD WSSIV HVALDNT++VN +K LC  N+++                  +S  +W+PL+
Sbjct: 159 YDKWSSIVIHVALDNTIIVNDIKSLCQRNEQSVIDSSAQKHSPLNEPVYFNSARKWKPLL 218

Query: 172 LVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVI 231
           LV+PLRLG+ +INPVY+NG+K C                           FTF QSLGVI
Sbjct: 219 LVVPLRLGLSEINPVYLNGLKTC---------------------------FTFRQSLGVI 251

Query: 232 GGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHM 291
           GGKPNHALYFIG VG  VI+LDPHT Q +  V  KE   EK  D +YHCP+ASR  IL M
Sbjct: 252 GGKPNHALYFIGCVGEHVIYLDPHTTQPVSIVDGKELSYEKTADLSYHCPRASRSRILDM 311

Query: 292 DPSIAV 297
           DPS+AV
Sbjct: 312 DPSVAV 317

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375955|gb|AEE63118.1| unknown [Dendroctonus ponderosae]

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 162/302 (53%), Positives = 212/302 (70%), Gaps = 30/302 (9%)

Query: 11  DLEQIRRDITSRLWFTYRKGFVPIGDS-GLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
           +L  IR+DI S+LWFTYRK FVPIG S G T+DKGWGCMLRCGQMV+ QAL+ +HLGRDW
Sbjct: 45  ELNTIRQDIVSKLWFTYRKDFVPIGGSDGKTSDKGWGCMLRCGQMVLGQALMSIHLGRDW 104

Query: 70  QWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 129
           QWN  +++  YL ILK FED R AP+SIHQIA  G SEGK VG+WFGPNTVAQVL+KL K
Sbjct: 105 QWNPTTRDATYLSILKKFEDSRKAPFSIHQIASMGISEGKEVGQWFGPNTVAQVLKKLVK 164

Query: 130 YDDWSSIVFHVALDNTLVVNQVKKLCTTNKRAS-SNPQWQPLVLVIPLRLGIQDINPVYI 188
           +D+ + +  HVALDN +++++++ LC + + A  S P W+PL+L++PLRLG+  +N +Y+
Sbjct: 165 FDEGNDVAIHVALDNVVIISEIRDLCLSKETADVSTPHWKPLLLIVPLRLGLTQMNSIYL 224

Query: 189 NGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGND 248
            G+K+C                           F F QSLG+IGGKPN ALYFIGYVGN+
Sbjct: 225 GGLKQC---------------------------FQFKQSLGIIGGKPNSALYFIGYVGNE 257

Query: 249 VIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ-RSYSDYK 307
           VI+ DPHT Q  G V +K+   EK +D +YHC  ASR+ +L MDPS+AV    RS +D+ 
Sbjct: 258 VIYFDPHTTQKAGSVGNKDTSEEKDVDLSYHCKHASRMSMLGMDPSVAVCFLCRSEADFN 317

Query: 308 NV 309
           ++
Sbjct: 318 DL 319

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209969827|ref|NP_001123274.2| autophagy-specific gene 4 [Nasonia vitripennis]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 179/302 (59%), Positives = 213/302 (70%), Gaps = 39/302 (12%)

Query: 8   SHQDLEQIRRDITSRLWFTYRKGFVPIGDSG--LTTDKGWGCMLRCGQMVIAQALLFLHL 65
           + +D++ IRRDI SRLWFTYRKGFVPIG  G   T+DKGWGCMLRCGQMV+ QAL+ LHL
Sbjct: 62  AKKDIDAIRRDIRSRLWFTYRKGFVPIGGFGSTFTSDKGWGCMLRCGQMVLGQALISLHL 121

Query: 66  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 125
           GRDW+W   ++   YL IL+ FEDRR APYSIHQIAL GASEGK VG+WFGPNT+AQVL+
Sbjct: 122 GRDWRWTPETRSSTYLNILRRFEDRRAAPYSIHQIALMGASEGKDVGQWFGPNTIAQVLK 181

Query: 126 KLAKYDDWSSIVFHVALDNTLVVNQVKKLC-----TTNKRASSNP-----QWQPLVLVIP 175
           KL  YDDWSSI  HVALDNTLVVN V + C     TT +     P     QW+PL+L+IP
Sbjct: 182 KLVVYDDWSSITIHVALDNTLVVNDVVQQCRVEGATTAEVDGEKPLKAPSQWKPLLLLIP 241

Query: 176 LRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKP 235
           LRLG+ +INP+YING+K                             F FPQSLG+IGGKP
Sbjct: 242 LRLGLNEINPIYINGLKT---------------------------SFQFPQSLGLIGGKP 274

Query: 236 NHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSI 295
           +HALYFIGYVG++VIFLDPHT Q  G V  K  D+E ++D+TYHC  ASR+ I  MDPS+
Sbjct: 275 SHALYFIGYVGDEVIFLDPHTTQRAGSVDQKSDDNEAEVDATYHCKIASRIPITGMDPSV 334

Query: 296 AV 297
           A+
Sbjct: 335 AL 336

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620505|gb|EHJ72670.1| putative Autophagy-specific protein [Danaus plexippus]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/310 (53%), Positives = 208/310 (67%), Gaps = 37/310 (11%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
           QDLE+IRRDITS +W TYRKGFVPIGD GLT+DKGWGCMLRCGQMV+  AL+ +HL  DW
Sbjct: 40  QDLERIRRDITSVIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALIKVHLSADW 99

Query: 70  QWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 129
            W   +++  YLKI++  E+R+ APYSIHQ+AL GA EGK VG+WFGPNTVAQVL+KL  
Sbjct: 100 VWTPETRDPTYLKIVQRLEERKQAPYSIHQVALMGACEGKEVGQWFGPNTVAQVLKKLVV 159

Query: 130 YDDWSSIVFHVALDNTLV---------VNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGI 180
           YD WSS+V HVALDNT+V         VN  +  C+ N        W PL+L++PLRLG+
Sbjct: 160 YDKWSSLVIHVALDNTVVKEDILQQCIVNNDRGDCSENVDGFVVSDWMPLLLIVPLRLGL 219

Query: 181 QDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALY 240
            +INP+Y+ G+K C                           F  PQS+GVIGGKPN ALY
Sbjct: 220 SEINPIYMEGLKIC---------------------------FQSPQSIGVIGGKPNQALY 252

Query: 241 FIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ 300
            IG VG++VI+LDPHT Q  G V +K  D +K++D TYHC  ASR+ IL MDPS+AV   
Sbjct: 253 LIGCVGDEVIYLDPHTTQKSGLVENKLTDEQKEMDCTYHCKYASRIPILSMDPSVAVCFL 312

Query: 301 -RSYSDYKNV 309
            R+ SD+  +
Sbjct: 313 CRTRSDFDEL 322

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|406042044|gb|AFS31124.1| autophagy related protein Atg4-like protein, partial [Spodoptera litura]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 205/296 (69%), Gaps = 35/296 (11%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
           QDL++IRRDITS +W TYRKGF+PIGD GLT+DKGWGCMLRCGQMV+  AL+ +HL  DW
Sbjct: 23  QDLDRIRRDITSIIWCTYRKGFIPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSADW 82

Query: 70  QWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 129
            W   +++  YLKI++ FE+R+ APYSIHQ+AL GASEGK VG+WFGPNTVAQVL+KL  
Sbjct: 83  VWTPETRDPTYLKIIQRFEERKQAPYSIHQVALMGASEGKQVGQWFGPNTVAQVLKKLTV 142

Query: 130 YDDWSSIVFHVALDNTLVVNQVKKLCTTNK---RASSNP-----QWQPLVLVIPLRLGIQ 181
           YD WSS+V HVALDNT+V   + + C  N      S+ P      W PL+L++PLRLG+ 
Sbjct: 143 YDKWSSLVIHVALDNTVVKEDILQQCVVNNDRGDCSAAPDSLVTDWMPLLLIVPLRLGLS 202

Query: 182 DINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYF 241
           +INP+YI+G+K C                           F  PQS+GVIGGKPN ALY 
Sbjct: 203 EINPIYIDGLKIC---------------------------FQCPQSIGVIGGKPNQALYL 235

Query: 242 IGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           +G VG++VI+LDPHT Q  G V  K  D +K++D +YHC  ASR+ +L MDPS+AV
Sbjct: 236 VGCVGDEVIYLDPHTTQRSGLVETKTTDEQKEMDWSYHCKYASRIPMLAMDPSVAV 291

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023311|ref|XP_003695467.1| PREDICTED: cysteine protease ATG4B-like [Apis florea]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/300 (57%), Positives = 212/300 (70%), Gaps = 39/300 (13%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIG--DSGLTTDKGWGCMLRCGQMVIAQALLFLHLGR 67
           ++L+ IRRDI S+LWFTYRK FVPIG  +S  T+DKGWGCMLRCGQMV+ QAL+ LHLGR
Sbjct: 34  RELDAIRRDIRSKLWFTYRKNFVPIGGYNSTFTSDKGWGCMLRCGQMVLGQALIILHLGR 93

Query: 68  DWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKL 127
           DWQWN+ ++   YLKIL+ FED+R AP+SIHQIAL GASEGK VG+WFGPNTVAQVL+KL
Sbjct: 94  DWQWNLETRNSTYLKILERFEDKRNAPFSIHQIALMGASEGKEVGQWFGPNTVAQVLKKL 153

Query: 128 AKYDDWSSIVFHVALDNTLVVNQVKKLC-----TTNKRASSNP-----QWQPLVLVIPLR 177
             +D+WSSI  HVALDNTL+VN + K C     TT +     P     QW+PL+L+IPLR
Sbjct: 154 VVFDEWSSITIHVALDNTLIVNDILKQCRVEGGTTVEADGDAPLKAPSQWKPLLLLIPLR 213

Query: 178 LGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNH 237
           LG+ +INP+YING+K                             F  PQSLGVIGGKP H
Sbjct: 214 LGLSEINPIYINGLKT---------------------------SFKIPQSLGVIGGKPTH 246

Query: 238 ALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           ALYFIG VGN+VI+LDPHT Q  G V  K ++ E ++D+TYHC  + R+ I+ +DPS+A+
Sbjct: 247 ALYFIGCVGNEVIYLDPHTTQKSGSVAKKLEEEEIEMDATYHCKFSGRIPIIEIDPSVAL 306

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861144|ref|XP_003706046.1| PREDICTED: cysteine protease ATG4B-like [Megachile rotundata]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 174/300 (58%), Positives = 209/300 (69%), Gaps = 39/300 (13%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGD--SGLTTDKGWGCMLRCGQMVIAQALLFLHLGR 67
           ++L+ IRRDI S+LWFTYRKGFVPIG   S  T+DKGWGCMLRCGQMV+ QAL+ LHLGR
Sbjct: 34  KELDAIRRDIRSKLWFTYRKGFVPIGGYTSTFTSDKGWGCMLRCGQMVLGQALIILHLGR 93

Query: 68  DWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKL 127
           DWQW   ++   YLKIL+ FEDRRTAP+SIHQIA  GASEGK VG+WFGPNT+AQVL+KL
Sbjct: 94  DWQWTPETRNSTYLKILERFEDRRTAPFSIHQIASMGASEGKEVGQWFGPNTIAQVLKKL 153

Query: 128 AKYDDWSSIVFHVALDNTLVVNQVKKLCT----TNKRASSN------PQWQPLVLVIPLR 177
             YDDWSSI  HVALDNTL+VN + + C     T   A  N       QW+PL+L+IPLR
Sbjct: 154 VVYDDWSSITIHVALDNTLIVNDILRQCRVEGGTTAEADGNIPLKAPSQWKPLLLLIPLR 213

Query: 178 LGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNH 237
           LG+ +INP+YING+K                             F  PQSLGVIGGKPN 
Sbjct: 214 LGLSEINPIYINGLKT---------------------------SFKIPQSLGVIGGKPNL 246

Query: 238 ALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           ALYFIG VGN+VI+LDPHT Q  G V  K ++ E ++D+TYHC  ASR+ I  +DPS+A+
Sbjct: 247 ALYFIGCVGNEVIYLDPHTTQRSGSVDKKLEEEEIEMDATYHCKFASRIPITGIDPSVAL 306

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529516|ref|XP_624577.1| PREDICTED: cysteine protease ATG4B [Apis mellifera]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/300 (56%), Positives = 212/300 (70%), Gaps = 39/300 (13%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIG--DSGLTTDKGWGCMLRCGQMVIAQALLFLHLGR 67
           ++L+ IRRDI S+LWFTYRK FVPIG  +S  T+DKGWGCMLRCGQMV+ QAL+ LHLGR
Sbjct: 34  RELDAIRRDIRSKLWFTYRKNFVPIGGYNSTFTSDKGWGCMLRCGQMVLGQALIILHLGR 93

Query: 68  DWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKL 127
           DWQW++ ++   YLKIL+ FED+R AP+SIHQIAL GASEGK VG+WFGPNTVAQVL+KL
Sbjct: 94  DWQWSLETRNSTYLKILERFEDKRNAPFSIHQIALMGASEGKEVGQWFGPNTVAQVLKKL 153

Query: 128 AKYDDWSSIVFHVALDNTLVVNQVKKLC-----TTNKRASSNP-----QWQPLVLVIPLR 177
             +D+WSSI  HVALDNTL+VN + K C     TT +     P     QW+PL+L+IPLR
Sbjct: 154 VVFDEWSSITIHVALDNTLIVNDILKQCRVEGGTTVEADGDAPLKAPSQWKPLLLLIPLR 213

Query: 178 LGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNH 237
           LG+ +INP+YING+K                             F  PQSLGVIGGKP H
Sbjct: 214 LGLSEINPIYINGLKT---------------------------SFKIPQSLGVIGGKPTH 246

Query: 238 ALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           ALYFIG VGN+VI+LDPHT Q  G V  K ++ E ++D+TYHC  + R+ I+ +DPS+A+
Sbjct: 247 ALYFIGCVGNEVIYLDPHTTQKSGSVAKKLEEEEIEMDATYHCKFSGRIPIIEIDPSVAL 306

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
FB|FBgn0031298	411	Atg4 "Autophagy-specific gene	0.598	0.450	0.602	3.6e-80
UNIPROTKB|Q5ZIW7	380	ATG4A "Cysteine protease ATG4A	0.501	0.407	0.544	8.1e-79
ZFIN|ZDB-GENE-040917-3	394	atg4b "ATG4 autophagy related	0.462	0.362	0.569	8e-77
RGD|1596915	406	Atg4al1 "autophagy related 4A,	0.446	0.339	0.568	1.6e-76
UNIPROTKB|Q6PZ05	398	ATG4A "Cysteine protease ATG4A	0.877	0.680	0.464	1.1e-64
UNIPROTKB|A6QLH1	398	ATG4A "ATG4 autophagy related	0.877	0.680	0.464	1.4e-64
UNIPROTKB|Q9Y4P1	393	ATG4B "Cysteine protease ATG4B	0.472	0.371	0.557	1.4e-64
MGI|MGI:1913865	393	Atg4b "autophagy related 4B, c	0.472	0.371	0.551	1.4e-64
UNIPROTKB|F1NW36	391	ATG4B "Cysteine protease ATG4B	0.886	0.700	0.472	1.8e-64
UNIPROTKB|Q6PZ02	393	ATG4B "Cysteine protease ATG4B	0.886	0.697	0.472	1.8e-64

FB|FBgn0031298 Atg4 "Autophagy-specific gene 4" [Drosophila melanogaster (taxid:7227)]

 Score = 619 (223.0 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 115/191 (60%), Positives = 144/191 (75%)

Query:    10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
             Q+LE IRRDI SRLW TYR GF P+G+  LTTDKGWGCMLRCGQMV+AQAL+ LHLGRDW
Sbjct:    61 QELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCMLRCGQMVLAQALIDLHLGRDW 120

Query:    70 QWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAK 129
              W  + ++  YLKI+  FED R + YSIHQIA  G S+ KAVGEW GPNTVAQ+L+KL +
Sbjct:   121 FWTPDCRDATYLKIVNRFEDVRNSFYSIHQIAQMGESQNKAVGEWLGPNTVAQILKKLVR 180

Query:   130 YDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYIN 189
             +DDWSS+  HVA+D+T+V++ V   C   +   S   W+PL+L+IPLRLGI DINP+Y+ 
Sbjct:   181 FDDWSSLAIHVAMDSTVVLDDVYASC---REGGS---WKPLLLIIPLRLGITDINPLYVP 234

Query:   190 GIKKCYALPIS 200
              +K+C  L  S
Sbjct:   235 ALKRCLELDSS 245

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0010506 "regulation of autophagy" evidence=IMP

UNIPROTKB|Q5ZIW7 ATG4A "Cysteine protease ATG4A" [Gallus gallus (taxid:9031)]

 Score = 496 (179.7 bits), Expect = 8.1e-79, Sum P(3) = 8.1e-79
 Identities = 85/156 (54%), Positives = 121/156 (77%)

Query:     9 HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRD 68
             ++D  ++  D+++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRD
Sbjct:    22 NEDKSKLLLDVSARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRD 81

Query:    69 WQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKL 127
             WQW  + K+ E Y +IL  F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KL
Sbjct:    82 WQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKL 141

Query:   128 AKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASS 163
             A +D+W+S+  +V++DNT+V+  +KK+C +  ++SS
Sbjct:   142 ALFDEWNSLAVYVSMDNTVVIEDIKKMCRSPPQSSS 177

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040917-3 atg4b "ATG4 autophagy related 4 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 489 (177.2 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
 Identities = 82/144 (56%), Positives = 111/144 (77%)

Query:    13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
             + I  D+TSRLWFTYRK F PIG +G T+D GWGCMLRCGQM++ +AL+  HLGRDW+W+
Sbjct:    40 DDILADVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWS 99

Query:    73 VNSKEEA-YLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
                ++   Y+ IL  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct:   100 PGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query:   132 DWSSIVFHVALDNTLVVNQVKKLC 155
              WS +  HVA+DNT+V+ ++K+LC
Sbjct:   160 SWSRLAVHVAMDNTVVIEEIKRLC 183

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

RGD|1596915 Atg4al1 "autophagy related 4A, cysteine peptidase-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 470 (170.5 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
 Identities = 79/139 (56%), Positives = 110/139 (79%)

Query:    18 DITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKE 77
             DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W    ++
Sbjct:    48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWERQKEQ 107

Query:    78 -EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSI 136
              + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQV++KLA +D+W+S+
Sbjct:   108 PKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVIKKLALFDEWNSL 167

Query:   137 VFHVALDNTLVVNQVKKLC 155
               +V++DNT+V+  +KK+C
Sbjct:   168 AVYVSMDNTVVIEDIKKMC 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

UNIPROTKB|Q6PZ05 ATG4A "Cysteine protease ATG4A" [Bos taurus (taxid:9913)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 131/282 (46%), Positives = 186/282 (65%)

Query:    18 DITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKE 77
             DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W    ++
Sbjct:    48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWEKQKEQ 107

Query:    78 -EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSI 136
              + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+W+S+
Sbjct:   108 PKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSL 167

Query:   137 VFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYA 196
               +V++DNT+V+  +KK+C T   ++  P  +PL     L    Q   P       K   
Sbjct:   168 AVYVSMDNTVVIEDIKKMCRTLSLSADTPAERPLE---SLTASNQSKGPSACCTAWKPLL 224

Query:   197 LPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHT 256
             L I P+   +  ++  Y +   +  F  PQSLG +GGKPN+A YFIG++G+++IFLDPHT
Sbjct:   225 L-IVPLRLGINQINPVY-VDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHT 282

Query:   257 NQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHILHMDPSIAV 297
              Q      D E++     D T+HC Q   R++IL++DPS+A+
Sbjct:   283 TQTF---VDTEENGTAD-DQTFHCLQPPQRMNILNLDPSVAL 320

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|A6QLH1 ATG4A "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 131/282 (46%), Positives = 186/282 (65%)

Query:    18 DITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKE 77
             DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W    ++
Sbjct:    48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWEKQKEQ 107

Query:    78 -EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSI 136
              + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+W+S+
Sbjct:   108 PKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSL 167

Query:   137 VFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYA 196
               +V++DNT+V+  +KK+C T   ++  P  +PL     L    Q   P       K   
Sbjct:   168 AVYVSMDNTVVIEDIKKMCRTLSLSADTPAERPLE---SLTASNQSKGPSACCTAWKPLL 224

Query:   197 LPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHT 256
             L I P+   +  ++  Y +   +  F  PQSLG +GGKPN+A YFIG++G+++IFLDPHT
Sbjct:   225 L-IVPLRLGINQINPVY-VDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHT 282

Query:   257 NQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHILHMDPSIAV 297
              Q      D E++     D T+HC Q   R++IL++DPS+A+
Sbjct:   283 TQTF---VDTEENGTVD-DQTFHCLQPPQRMNILNLDPSVAL 320

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9Y4P1 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 489 (177.2 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 82/147 (55%), Positives = 113/147 (76%)

Query:    13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
             ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct:    40 DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 99

Query:    73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
                ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct:   100 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query:   132 DWSSIVFHVALDNTLVVNQVKKLCTTN 158
              WSS+  H+A+DNT+V+ ++++LC T+
Sbjct:   160 TWSSLAVHIAMDNTVVMEEIRRLCRTS 186

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006508 "proteolysis" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0006914 "autophagy" evidence=IGI

GO:0000045 "autophagic vacuole assembly" evidence=IGI

GO:0010508 "positive regulation of autophagy" evidence=IDA

GO:0004175 "endopeptidase activity" evidence=IDA

MGI|MGI:1913865 Atg4b "autophagy related 4B, cysteine peptidase" [Mus musculus (taxid:10090)]

 Score = 486 (176.1 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query:    13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
             ++I  D+ SRLWFTYR+ F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct:    40 DEILSDVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 99

Query:    73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
                ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct:   100 QRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 159

Query:   132 DWSSIVFHVALDNTLVVNQVKKLCTTN 158
              WSS+  H+A+DNT+V+ ++++LC  N
Sbjct:   160 TWSSLAVHIAMDNTVVMEEIRRLCRAN 186

GO:0000045 "autophagic vacuole assembly" evidence=ISO

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0006508 "proteolysis" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=ISO;ISS

GO:0008152 "metabolic process" evidence=IDA;TAS

GO:0008233 "peptidase activity" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO;TAS

GO:0010508 "positive regulation of autophagy" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

UNIPROTKB|F1NW36 ATG4B "Cysteine protease ATG4B" [Gallus gallus (taxid:9031)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 138/292 (47%), Positives = 190/292 (65%)

Query:    13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
             E+I  D+TSRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct:    37 EEILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWI 96

Query:    73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
                ++ + Y  +L  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct:    97 KGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATFD 156

Query:   132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQWQPLVLV--IPLRLGIQDINPV 186
              WSS+  H+A+DNT+V+ ++++LC +N     A++ P  +  VL    P   G++D   +
Sbjct:   157 TWSSLAVHIAMDNTVVMEEIRRLCQSNFSCAGAAACPAVEADVLYNGYPEEAGVRDKLSL 216

Query:   187 YINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVG 246
             +     K   L I     + +I +  Y ++T ++ F  PQSLGVIGGKPN A YFIGYVG
Sbjct:   217 W-----KPLVLLIPLRLGLTEI-NEAY-IETLKHCFMMPQSLGVIGGKPNSAHYFIGYVG 269

Query:   247 NDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQAS-RLHILHMDPSIAV 297
              ++I+LDPHT Q    V  +  DS    D ++HC     R+ I  +DPSIAV
Sbjct:   270 EELIYLDPHTTQP--AV--EPSDSGCLPDESFHCQHPPCRMSIAELDPSIAV 317

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|Q6PZ02 ATG4B "Cysteine protease ATG4B" [Gallus gallus (taxid:9031)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 138/292 (47%), Positives = 190/292 (65%)

Query:    13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
             E+I  D+TSRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct:    39 EEILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWI 98

Query:    73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
                ++ + Y  +L  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct:    99 KGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATFD 158

Query:   132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQWQPLVLV--IPLRLGIQDINPV 186
              WSS+  H+A+DNT+V+ ++++LC +N     A++ P  +  VL    P   G++D   +
Sbjct:   159 TWSSLAVHIAMDNTVVMEEIRRLCQSNFSCAGAAACPAVEADVLYNGYPEEAGVRDKLSL 218

Query:   187 YINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVG 246
             +     K   L I     + +I +  Y ++T ++ F  PQSLGVIGGKPN A YFIGYVG
Sbjct:   219 W-----KPLVLLIPLRLGLTEI-NEAY-IETLKHCFMMPQSLGVIGGKPNSAHYFIGYVG 271

Query:   247 NDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQAS-RLHILHMDPSIAV 297
              ++I+LDPHT Q    V  +  DS    D ++HC     R+ I  +DPSIAV
Sbjct:   272 EELIYLDPHTTQP--AV--EPSDSGCLPDESFHCQHPPCRMSIAELDPSIAV 319

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WYN0	ATG4A_HUMAN	3, ., 4, ., 2, 2, ., -	0.4545	0.8187	0.6356	yes	N/A
A2QY50	ATG4_ASPNC	3, ., 4, ., 2, 2, ., -	0.3311	0.7961	0.6089	yes	N/A
Q6PZ02	ATG4B_CHICK	3, ., 4, ., 2, 2, ., -	0.4583	0.8220	0.6463	yes	N/A
Q6PZ05	ATG4A_BOVIN	3, ., 4, ., 2, 2, ., -	0.4480	0.8187	0.6356	yes	N/A
Q2U5B0	ATG4_ASPOR	3, ., 4, ., 2, 2, ., -	0.3258	0.8122	0.6167	yes	N/A
Q6DG88	ATG4B_DANRE	3, ., 4, ., 2, 2, ., -	0.4600	0.8220	0.6446	yes	N/A
Q5R699	ATG4A_PONAB	3, ., 4, ., 2, 2, ., -	0.4512	0.8187	0.6356	yes	N/A
A7KAL5	ATG4_PENCW	3, ., 4, ., 2, 2, ., -	0.3059	0.7961	0.6134	yes	N/A
Q8C9S8	ATG4A_MOUSE	3, ., 4, ., 2, 2, ., -	0.4426	0.8187	0.6388	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	309
pfam03416	277	pfam03416, Peptidase_C54, Peptidase family C54	1e-124

>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54

 Score =  357 bits (917), Expect = e-124
 Identities = 134/290 (46%), Positives = 176/290 (60%), Gaps = 34/290 (11%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
             LE    D+ SR+WFTYR+GF PIG +G T+D GWGCMLR GQM++AQAL+  HLGRDW
Sbjct: 2   TGLEAFLSDVYSRIWFTYRRGFPPIGGTGFTSDCGWGCMLRTGQMLLAQALIIHHLGRDW 61

Query: 70  QWNVNSKEEA-YLKILKMFEDRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKL 127
           +W    + +  Y KIL  F D   AP+SIHQ    G S  GK  GEWFGPNTVA++L+KL
Sbjct: 62  RWPAEKEPDEEYKKILAWFGDSPDAPFSIHQFVQMGKSLCGKKPGEWFGPNTVARILKKL 121

Query: 128 AKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVY 187
            K+DDWS +  +VA+D T+V + + + C+          W+PL+L+IPLRLGI  INPVY
Sbjct: 122 VKFDDWSGLAVYVAMDGTVVYDDIVEKCSAPNNGQ--SAWKPLLLLIPLRLGIDKINPVY 179

Query: 188 INGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGN 247
           I  +K+C                           F+ PQS+G+IGGKPN +LYF+G+ G+
Sbjct: 180 IEALKEC---------------------------FSLPQSVGIIGGKPNQSLYFVGFQGD 212

Query: 248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
           ++I+LDPHT Q         Q      D TYHC    +LH   MDPS+A+
Sbjct: 213 ELIYLDPHTVQEAV---TVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAI 259

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PF03416	278	Peptidase_C54: Peptidase family C54 This family be	100.0
KOG2674|consensus	409		100.0
PF07910	218	Peptidase_C78: Peptidase family C78; InterPro: IPR	98.51
KOG2433|consensus	577		98.4
KOG4696|consensus	393		94.93
KOG4696|consensus	393		85.43

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification

Probab=100.00  E-value=8.6e-100  Score=715.10  Aligned_cols=270  Identities=47%  Similarity=0.911  Sum_probs=213.1

Q ss_pred             HHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccCC-cchHHHHHHHHhhc
Q psy10465         10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVN-SKEEAYLKILKMFE   88 (309)
Q Consensus        10 ~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~-~~~~~~~~il~~F~   88 (309)
                      ++.|+|++|++|+||||||+|||||+++++|||+|||||||||||||||||++||+||+|++..+ +..+.+.+||+||.
T Consensus         1 ~~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~   80 (278)
T PF03416_consen    1 QNKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQ   80 (278)
T ss_dssp             TTHHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTS
T ss_pred             CcHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999999999999999999999999765 66788999999999


Q ss_pred             CCCCCCCcHHHHHHhhhhc-CCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCCCCCCCC
Q psy10465         89 DRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQW  167 (309)
Q Consensus        89 D~~~apfSIh~i~~~g~~~-gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~~~~~~~  167 (309)
                      |+++||||||||+++|.+. |++||+||||+++|++|++|++...+.+++|||+.|++++.+|+.+.|...........|
T Consensus        81 D~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~~~~~l~v~v~~d~~i~~~d~~~~~~~~~~~~~~~~~  160 (278)
T PF03416_consen   81 DSPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEADLSGLRVYVSSDGTIYYDDVEELCSNSNPTKQSSWW  160 (278)
T ss_dssp             SSTTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC-TTT--EEEE-BTTEEEHHHHHHHHCCS-S-----CE
T ss_pred             CCCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhccccCceEEEeeccccchhHHHHHHhhhccccccccC
Confidence            9999999999999999987 999999999999999999999988899999999999999999999998765433344567


Q ss_pred             cceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccCceeEEeeCCcCeeeEEEEEecC
Q psy10465        168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGN  247 (309)
Q Consensus       168 ~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~pqsvGIiGGrp~~A~YfvG~q~d  247 (309)
                      +|+|||||+|||++++||+|++.|+++                           |++|||+|||||||++|+||||+|+|
T Consensus       161 ~~vLlliplrLGl~~in~~Y~~~l~~~---------------------------l~~pq~vGiiGG~p~~a~YfvG~~~d  213 (278)
T PF03416_consen  161 KPVLLLIPLRLGLDKINPKYIPSLKSL---------------------------LSLPQSVGIIGGRPNSALYFVGFQGD  213 (278)
T ss_dssp             --EEEEEEEE-SSSS--GGGHHHHHHH---------------------------CCSTTEEEEEEEETTEEEEEEEEETT
T ss_pred             ceEEEEEEeecCCCCCCHHHHHHHHHH---------------------------hCCcccceeeccCCCceEEEEEEccC
Confidence            999999999999999999999999999                           99999999999999999999999999


Q ss_pred             eEEeeCCCCcccccccCCcccccccCCCCceecCCCccccccccCcceEEEee-CCchhhccC
Q psy10465        248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ-RSYSDYKNV  309 (309)
Q Consensus       248 ~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~~~~m~~~~lDPS~~lGFy-~s~~df~dl  309 (309)
                      +|||||||++|+|++......+   ...+||||+.+++|++++|||||++||| +|++||+||
T Consensus       214 ~liYLDPH~~Q~a~~~~~~~~~---~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~  273 (278)
T PF03416_consen  214 QLIYLDPHYVQPAVDSQNNNFE---LDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDF  273 (278)
T ss_dssp             EEEEE---SEEE-----TTS--------GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHH
T ss_pred             eEEEECCCCCeeCCccCCCCCc---CCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHH
Confidence            9999999999999876544322   1147999999999999999999999999 999999975

; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.

>KOG2674|consensus

Probab=100.00  E-value=8.3e-97  Score=714.21  Aligned_cols=271  Identities=52%  Similarity=1.035  Sum_probs=251.9

Q ss_pred             CChHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccCCcc-hHHHHHHHH
Q psy10465          7 LSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSK-EEAYLKILK   85 (309)
Q Consensus         7 ~~~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~-~~~~~~il~   85 (309)
                      .+.++-|+|+.|+.||||||||+||+||+++++|||+|||||||||||||||||+++||||||+|.+++. ++.|..||+
T Consensus        58 is~~~~e~f~~D~~Sriw~TYR~~F~pig~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~  137 (409)
T KOG2674|consen   58 ISTEESEEFLSDVSSRLWFTYRRGFSPIGGTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILN  137 (409)
T ss_pred             eccCHHHHHHHhhhhcceeeccCCCCcccCCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHH
Confidence            3444449999999999999999999999999999999999999999999999999999999999976655 778999999


Q ss_pred             hhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcC------
Q psy10465         86 MFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNK------  159 (309)
Q Consensus        86 ~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~------  159 (309)
                      +|.|.+.+|||||||+++|+..++.+|+||||+++|+++++|..++.|+.+.+|+++|+.++++++.+.|....      
T Consensus       138 ~F~D~~~a~~SiHq~~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~  217 (409)
T KOG2674|consen  138 LFEDEPDAPFSIHQIVQMGVGEGKAVGSWFGPNTVAQVLKKLARFDPWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTI  217 (409)
T ss_pred             hhcCCCccccCHHHHHHHHhhccCCCccccCCcHHHHHHHHhhccCCCCCccEEEecccceEEeeeehhcccCCccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999988887641      


Q ss_pred             ---------CCCCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccCceeEE
Q psy10465        160 ---------RASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV  230 (309)
Q Consensus       160 ---------~~~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~pqsvGI  230 (309)
                               ..+.+.+|||||||||+|||++++||.|+++||++                           |++||||||
T Consensus       218 ~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~~---------------------------f~~~q~lGI  270 (409)
T KOG2674|consen  218 EDATKQSLEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKEC---------------------------FEMPQSVGI  270 (409)
T ss_pred             cccchhhcccCCCCCCCcceEEEEEeeecccccChHHHHHHHHH---------------------------hcchhhcee
Confidence                     12346789999999999999999999999999999                           999999999


Q ss_pred             eeCCcCeeeEEEEEecCeEEeeCCCCcccccccCC-cccccccCCCCceecCCCccccccccCcceEEEee-CCchhhcc
Q psy10465        231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYD-KEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ-RSYSDYKN  308 (309)
Q Consensus       231 iGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~-~~~~~~~~~~~syhc~~~~~m~~~~lDPS~~lGFy-~s~~df~d  308 (309)
                      +||||+||+||||||||.|||||||++|+++++.. .+.+     ++||||+.+++|++.+||||||+||| ++++||++
T Consensus       271 ~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs~~~~~~-----~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~  345 (409)
T KOG2674|consen  271 IGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVSKAKDVP-----DETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDN  345 (409)
T ss_pred             ccCCCCcceEEEEEecceEEEeCCccCcccccccccCCCC-----ccccccCchhhcchhhcCcceEEEEEecCHHHHHH
Confidence            99999999999999999999999999999998773 3333     68999999999999999999999999 99999987


Q ss_pred             C
Q psy10465        309 V  309 (309)
Q Consensus       309 l  309 (309)
                      +
T Consensus       346 ~  346 (409)
T KOG2674|consen  346 L  346 (409)
T ss_pred             H
Confidence            4

>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=8.6e-08  Score=88.23  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             eEEeeCCcCeeeEEEEEec-----CeEEeeCCCCcccc
Q psy10465        228 LGVIGGKPNHALYFIGYVG-----NDVIFLDPHTNQNI  260 (309)
Q Consensus       228 vGIiGGrp~~A~YfvG~q~-----d~LiyLDPH~~Q~a  260 (309)
                      --++|| ..||.=|||+.-     -+|+.||||++-.+
T Consensus       149 Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~  185 (218)
T PF07910_consen  149 PIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD  185 (218)
T ss_dssp             -EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred             CeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence            345666 899999999974     38999999997764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.

>KOG2433|consensus

Probab=98.40  E-value=1.6e-06  Score=85.71  Aligned_cols=90  Identities=22%  Similarity=0.388  Sum_probs=56.9

Q ss_pred             cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhh-hcCCCC------c
Q psy10465         40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGA-SEGKAV------G  112 (309)
Q Consensus        40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~-~~gk~~------G  112 (309)
                      .-|.||||..||-|.+-....+.   |                       -.++|---|+=++.++ ..+.||      -
T Consensus       403 idD~GWGCAYRSlQTIcSWFilq---G-----------------------YT~~pIPtHrEiQqaLvdi~DKpA~FVGSr  456 (577)
T KOG2433|consen  403 IDDSGWGCAYRSLQTICSWFILQ---G-----------------------YTDKPIPTHREIQQALVDIQDKPAKFVGSR  456 (577)
T ss_pred             cccCCcchhhHhHHHHHHHHHHc---C-----------------------ccCCCCCcHHHHHHHHHhccCcccceeccc
Confidence            67999999999999876553321   1                       1223333443333332 233333      3


Q ss_pred             cccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcC
Q psy10465        113 EWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNK  159 (309)
Q Consensus       113 ~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~  159 (309)
                      +|.|-+.+..+|..|.+-+    ..+.....|.-+.+.+++++....
T Consensus       457 QWIGStEis~vLn~ll~~~----skil~v~sGaEva~~~rELA~HFq  499 (577)
T KOG2433|consen  457 QWIGSTEISFVLNELLKLE----SKILAVNSGAEVAERVRELARHFQ  499 (577)
T ss_pred             ceecchhHHHHHHHHhccc----eEEEEeccccHHHHHHHHHHHHhh
Confidence            8999999999999998643    223334467777777777776653

>KOG4696|consensus

Probab=94.93  E-value=0.013  Score=56.56  Aligned_cols=38  Identities=42%  Similarity=0.625  Sum_probs=28.8

Q ss_pred             eecCCCccCC----CCCCcccccccccccchhhHHHHHHHHH
Q psy10465         26 TYRKGFVPIG----DSGLTTDKGWGCMLRCGQMVIAQALLFL   63 (309)
Q Consensus        26 TYR~~F~~i~----~~~~tsD~GWGCmiRs~QMlLAqaL~~~   63 (309)
                      ..-+||.-|+    +...--|.||||..|+.|||++..|...
T Consensus       174 awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~~  215 (393)
T KOG4696|consen  174 AWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQL  215 (393)
T ss_pred             HHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHhh
Confidence            4456776554    2345568999999999999999998653

>KOG4696|consensus

Probab=85.43  E-value=0.42  Score=46.49  Aligned_cols=22  Identities=45%  Similarity=0.809  Sum_probs=19.1

Q ss_pred             cccccccccccchhhHHHHHHH
Q psy10465         40 TTDKGWGCMLRCGQMVIAQALL   61 (309)
Q Consensus        40 tsD~GWGCmiRs~QMlLAqaL~   61 (309)
                      .-|.||||.-|.+||.+|.-|.
T Consensus       124 ~~d~Gwgcgw~niqmq~shll~  145 (393)
T KOG4696|consen  124 GIDRGWGCGWRNIQMQISHLLY  145 (393)
T ss_pred             ccccccCccccchHHHHHHHHh
Confidence            3589999999999999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
2p82_A	355	Cysteine Protease Atg4a Length = 355		4e-76
2d1i_A	398	Structure Of Human Atg4b Length = 398		7e-74
2cy7_A	396	The Crystal Structure Of Human Atg4b Length = 396		7e-74
2z0d_A	357	The Crystal Structure Of Human Atg4b- Lc3(1-120) Co		1e-72
2zzp_A	357	The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-1		2e-72

>pdb|2P82|A Chain A, Cysteine Protease Atg4a Length = 355

Iteration: 1
 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 140/308 (45%), Positives = 197/308 (63%), Gaps = 55/308 (17%)
Query: 14  QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
           ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW W  
Sbjct: 40  KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEK 99
Query: 74  NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
             ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA +D+
Sbjct: 100 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDE 159
Query: 133 WSSIVFHVALDNTLVVNQVKKLC--------TTNKR-----ASSN---------PQWQPL 170
           W+S+  +V++DNT+V+  +KK+C        T   R      +SN           W+PL
Sbjct: 160 WNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPL 219
Query: 171 VLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230
           +L++PLRLGI  INPVY++  K+C                           F  PQSLG 
Sbjct: 220 LLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQSLGA 252
Query: 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHIL 289
           +GGKPN+A YFIG++G+++IFLDPHT Q      D E++     D T+HC Q+  R++IL
Sbjct: 253 LGGKPNNAYYFIGFLGDELIFLDPHTTQTF---VDTEENGTVN-DQTFHCLQSPQRMNIL 308
Query: 290 HMDPSIAV 297
           ++DPS+A+
Sbjct: 309 NLDPSVAL 316

>pdb|2D1I|A Chain A, Structure Of Human Atg4b Length = 398

Iteration: 1
 Score =  273 bits (699), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)
Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 45  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 104
Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 105 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 164
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WSS+  H+A+DNT+V+ ++++LC T+     A++ P                      W
Sbjct: 165 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 224
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 225 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 257
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  D     D ++HC     R+
Sbjct: 258 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPTDGCFIPDESFHCQHPPCRM 313
Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 314 SIAELDPSIAV 324

>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b Length = 396

Iteration: 1
 Score =  273 bits (699), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)
Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 43  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WSS+  H+A+DNT+V+ ++++LC T+     A++ P                      W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  D     D ++HC     R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 312 SIAELDPSIAV 322

>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex Length = 357

Iteration: 1
 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 186/311 (59%), Gaps = 57/311 (18%)
Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 43  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WSS+  H+A+DNT+V+ ++++LC T+     A++ P                      W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDP T Q       +  D     D ++HC     R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPATTQPA----VEPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 312 SIAELDPSIAV 322

>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124) Complex Length = 357

Iteration: 1
 Score =  269 bits (687), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 186/311 (59%), Gaps = 57/311 (18%)
Query: 13  EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
           ++I  D+ SRLWFTYRK F  IG +G T+D GWG MLRCGQM+ AQAL+  HLGRDW+W 
Sbjct: 43  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGSMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73  VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
              ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
            WSS+  H+A+DNT+V+ ++++LC T+     A++ P                      W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
           +PLVL+IPLRLG+ DIN  Y+  +K C                           F  PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
           LGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  D     D ++HC     R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA----VEPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
            I  +DPSIAV
Sbjct: 312 SIAELDPSIAV 322

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	2e-89
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	1e-87

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Length = 396

 Score =  271 bits (693), Expect = 2e-89
 Identities = 139/316 (43%), Positives = 184/316 (58%), Gaps = 57/316 (18%)

Query: 8   SHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGR 67
              + ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGR
Sbjct: 38  IFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGR 97

Query: 68  DWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRK 126
           DW+W    +  ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+K
Sbjct: 98  DWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKK 157

Query: 127 LAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASS----------------------- 163
           LA +D WSS+  H+A+DNT+V+ ++++LC T+   +                        
Sbjct: 158 LAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTN 217

Query: 164 -NPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEF 222
               W+PLVL+IPLRLG+ DIN  Y+  +K C                           F
Sbjct: 218 RPSPWRPLVLLIPLRLGLTDINEAYVETLKHC---------------------------F 250

Query: 223 TFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ 282
             PQSLGVIGGKPN A YFIGYVG ++I+LDPHT Q       +  D     D ++HC  
Sbjct: 251 MMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQP----AVEPTDGCFIPDESFHCQH 306

Query: 283 AS-RLHILHMDPSIAV 297
              R+ I  +DPSIAV
Sbjct: 307 PPCRMSIAELDPSIAV 322

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Length = 355

 Score =  265 bits (678), Expect = 1e-87
 Identities = 131/311 (42%), Positives = 189/311 (60%), Gaps = 53/311 (17%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
            +  ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW
Sbjct: 36  TEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDW 95

Query: 70  QWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
            W     + + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA
Sbjct: 96  SWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLA 155

Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASS----------------------NPQ 166
            +D+W+S+  +V++DNT+V+  +KK+C     ++                          
Sbjct: 156 LFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA 215

Query: 167 WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQ 226
           W+PL+L++PLRLGI  INPVY++  K+C                           F  PQ
Sbjct: 216 WKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQ 248

Query: 227 SLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRL 286
           SLG +GGKPN+A YFIG++G+++IFLDPHT Q      D E++      + +      R+
Sbjct: 249 SLGALGGKPNNAYYFIGFLGDELIFLDPHTTQT---FVDTEENGTVNDQTFHCLQSPQRM 305

Query: 287 HILHMDPSIAV 297
           +IL++DPS+A+
Sbjct: 306 NILNLDPSVAL 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	100.0
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	100.0
3oqc_A	481	UFSP2, UFM1-specific protease 2; DPH motif Cys pro	98.66
2z84_A	218	UFSP1, UFM1-specific protease 1; alpha/beta, papai	98.64

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22

Probab=100.00  E-value=1.4e-103  Score=760.53  Aligned_cols=270  Identities=50%  Similarity=1.017  Sum_probs=250.4

Q ss_pred             hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHHHHHHhh
Q psy10465          9 HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYLKILKMF   87 (309)
Q Consensus         9 ~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~~il~~F   87 (309)
                      .+++|+|++||+||||||||+|||||+++++|||+|||||||||||||||||+++||||+|||.. ++.++.|.+||+||
T Consensus        35 ~~~~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLAqaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F  114 (355)
T 2p82_A           35 KTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCF  114 (355)
T ss_dssp             TTTHHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTT
T ss_pred             CcCHHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHHHHHHHHhcCccccccccccccHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999999999999999999999999954 45678899999999


Q ss_pred             cCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCC------
Q psy10465         88 EDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA------  161 (309)
Q Consensus        88 ~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~------  161 (309)
                      .|+++|||||||||++|.++||+|||||||+++|++|++|++++++++++|||++||+++.+||.++|....+.      
T Consensus       115 ~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~va~D~~v~~~di~~~c~~~~~~~~~~~~  194 (355)
T 2p82_A          115 LDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGD  194 (355)
T ss_dssp             SSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEECBTTEEEHHHHHHHHEECCSCC-----
T ss_pred             CCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhcccccCceEEEecCCcEeHHHHHHHhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999765321      


Q ss_pred             ----------------CCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccC
Q psy10465        162 ----------------SSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFP  225 (309)
Q Consensus       162 ----------------~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~p  225 (309)
                                      .....|+|+|||||+|||++++||+|++.||++                           |++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~plLlliplRLGld~in~~Y~~~Lk~~---------------------------l~~p  247 (355)
T 2p82_A          195 RPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMP  247 (355)
T ss_dssp             -----------------CCCEECCEEEEEEEECCSSSCCGGGHHHHHHH---------------------------HHST
T ss_pred             ccccccccccccccccccccCCceEEEEEEeecCCCcCCHHHHHHHHHH---------------------------hCcc
Confidence                            001258999999999999999999999999999                           9999


Q ss_pred             ceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecCC-CccccccccCcceEEEee-CCc
Q psy10465        226 QSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSIAVVSQ-RSY  303 (309)
Q Consensus       226 qsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~-~~~m~~~~lDPS~~lGFy-~s~  303 (309)
                      ||+|||||||++|+||||+|+|+|||||||+||+|++..+.+..+    ++||||+. +++|++++|||||+|||| +|+
T Consensus       248 qsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~~~----~~sfhc~~~~~~m~~~~lDPS~~lGF~c~~~  323 (355)
T 2p82_A          248 QSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVN----DQTFHCLQSPQRMNILNLDPSVALGFFCKEE  323 (355)
T ss_dssp             TEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSCBC----CGGGBCCSSCEEEEGGGSCSEEEEEEEESSH
T ss_pred             ccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCcCC----CCceeeCCCcCcCchhhcCcceEEEEEECCH
Confidence            999999999999999999999999999999999999765543322    58999999 999999999999999999 999


Q ss_pred             hhhccC
Q psy10465        304 SDYKNV  309 (309)
Q Consensus       304 ~df~dl  309 (309)
                      +||+|+
T Consensus       324 ~df~d~  329 (355)
T 2p82_A          324 KDFDNW  329 (355)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999974

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A

Probab=100.00  E-value=5.4e-101  Score=751.20  Aligned_cols=274  Identities=52%  Similarity=0.997  Sum_probs=247.4

Q ss_pred             ccCC-hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHHH
Q psy10465          5 NKLS-HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYLK   82 (309)
Q Consensus         5 ~~~~-~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~~   82 (309)
                      ++++ .++.++|++||+||||||||+|||||+++++|||+|||||||||||||||||+++||||+|||.. +++++.|.+
T Consensus        34 ~~y~~~~~~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLAqaL~~~~LGrdwr~~~~~~~~~~~~~  113 (396)
T 2cy7_A           34 RKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFS  113 (396)
T ss_dssp             EEECTTTCHHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHH
T ss_pred             cEecCCcCHHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHHHHHHHHHHhcccccccccccCcHHHHH
Confidence            3443 46789999999999999999999999999999999999999999999999999999999999964 445678999


Q ss_pred             HHHhhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCC-
Q psy10465         83 ILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA-  161 (309)
Q Consensus        83 il~~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~-  161 (309)
                      ||+||.|+++||||||||+++|.++||+||+||||+++|++|++|++++.+++++|||++|++|+.+||+++|....+. 
T Consensus       114 Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~va~D~~v~~~di~~~~~~~~~~~  193 (396)
T 2cy7_A          114 VLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCA  193 (396)
T ss_dssp             HHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEECCTTEEEHHHHHHHHBSSCCC-
T ss_pred             HHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhcccccCceEEEecCCceeHHHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988753210 


Q ss_pred             -----------------------CCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCC
Q psy10465        162 -----------------------SSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTP  218 (309)
Q Consensus       162 -----------------------~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (309)
                                             .....|+|+|||||+|||++++||+|++.||++                        
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlliplRLGld~iNp~Y~~~Lk~~------------------------  249 (396)
T 2cy7_A          194 GATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHC------------------------  249 (396)
T ss_dssp             --------------------------CCBCCEEEEEEEECCSSSCCGGGHHHHHHH------------------------
T ss_pred             cccccccccccccccccccccccccccCCcceEEEEEEeecCCcCCHHHHHHHHHH------------------------
Confidence                                   012459999999999999999999999999999                        


Q ss_pred             ccccccCceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecCC-CccccccccCcceEE
Q psy10465        219 RYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSIAV  297 (309)
Q Consensus       219 ~~~f~~pqsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~-~~~m~~~~lDPS~~l  297 (309)
                         |++|||+|||||||++|+||||+|+|+|||||||+||+|++..+.....    ++||||+. +++|++++|||||+|
T Consensus       250 ---l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~~~----~~s~hc~~~~~~m~~~~mDPS~~l  322 (396)
T 2cy7_A          250 ---FMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIP----DESFHCQHPPCRMSIAELDPSIAV  322 (396)
T ss_dssp             ---TSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCCCC----CGGGBCCSCCEEEEGGGSCSEEEE
T ss_pred             ---hCCcccceEecCccCceEEEEEEeCCEEEeeCCCcccccccccccccCC----CcceeecCcccccchhhcCCceEE
Confidence               9999999999999999999999999999999999999998764432211    57999997 589999999999999


Q ss_pred             Eee-CCchhhccC
Q psy10465        298 VSQ-RSYSDYKNV  309 (309)
Q Consensus       298 GFy-~s~~df~dl  309 (309)
                      ||| +|++||+|+
T Consensus       323 GFyc~~~~Df~d~  335 (396)
T 2cy7_A          323 GFFCKTEDDFNDW  335 (396)
T ss_dssp             EEEESSHHHHHHH
T ss_pred             EEEECCHHHHHHH
Confidence            999 999999874

>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}

Probab=98.66  E-value=1.1e-07  Score=93.95  Aligned_cols=64  Identities=23%  Similarity=0.383  Sum_probs=47.0

Q ss_pred             cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCc------c
Q psy10465         40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVG------E  113 (309)
Q Consensus        40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G------~  113 (309)
                      .-|.||||..|+-|||+..-+..   |  .                    .....-||.+|.++-...|.+|+      +
T Consensus       307 ~~D~GWGCGYRnlQtl~Swl~~q---~--y--------------------~~~~iPsi~~IQ~~Le~agDk~~~f~GSRk  361 (481)
T 3oqc_A          307 IDDNGWGSAYRSLQTICSWFRHQ---G--Y--------------------TERSIPTHREIQQALVDAGDKPATFVGSRQ  361 (481)
T ss_dssp             BCCTTTCHHHHHHHHHHHHHHHT---T--S--------------------CCSCCCCHHHHHHHHHHHTSSCGGGTTCCC
T ss_pred             CCCCCcccchhHHHHHHHHHHhc---C--C--------------------CCCCCCCHHHHHHHHHhccCCccccccccc
Confidence            47999999999999999985421   1  0                    01235577777766555566665      9


Q ss_pred             ccCHHHHHHHHHHHH
Q psy10465        114 WFGPNTVAQVLRKLA  128 (309)
Q Consensus       114 WfGPs~ia~~l~~L~  128 (309)
                      |.|-..++.+|..+.
T Consensus       362 WIGT~Ev~~vL~~ll  376 (481)
T 3oqc_A          362 WIGSIEVQMVLNQLI  376 (481)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             eechHHHHHHHHHhc
Confidence            999999999998765

>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}

Probab=98.64  E-value=1.5e-07  Score=85.32  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCc------c
Q psy10465         40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVG------E  113 (309)
Q Consensus        40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G------~  113 (309)
                      .-|.||||..|+-|||+..   +     ..                    .....-||.+|.++-+..+.+++      +
T Consensus        41 ~~D~GWGCgYRnlQml~Sw---q-----~y--------------------~~~~iPsi~~IQ~~Le~awdkg~~~~GSrk   92 (218)
T 2z84_A           41 LDDRGWGCGYRTLQTLCSW---P-----GG--------------------QSSGVPGLPALQGALEAMGDKPPGFRGSRN   92 (218)
T ss_dssp             CCCTTTCHHHHHHHHHHTT---T-----BT--------------------CCTTCCCHHHHHHHHHHTTSSCTTCTTCCC
T ss_pred             cccCCcccchhhhHHHHhh---c-----cc--------------------cCCCCCCHHHHHHHHHHccccCCccccccc
Confidence            4789999999999999887   1     10                    02235677777766555555443      8


Q ss_pred             ccCHHHHHHHHHHHH
Q psy10465        114 WFGPNTVAQVLRKLA  128 (309)
Q Consensus       114 WfGPs~ia~~l~~L~  128 (309)
                      |.|-..++.+|..|.
T Consensus        93 WIGt~E~~~~l~sll  107 (218)
T 2z84_A           93 WIGCVEASLCLEHFG  107 (218)
T ss_dssp             CCCHHHHHHHHHHTT
T ss_pred             eechHHHHHHHHhhc
Confidence            999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d2p82a1	334	d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human	1e-106
d2z0da1	350	d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human	1e-105

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Length = 334

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  310 bits (795), Expect = e-106
 Identities = 134/312 (42%), Positives = 191/312 (61%), Gaps = 55/312 (17%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
            +  ++  DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+  HLGRDW
Sbjct: 15  TEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDW 74

Query: 70  QWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
            W     + + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL+KLA
Sbjct: 75  SWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLA 134

Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSN----------------------PQ 166
            +D+W+S+  +V++DNT+V+  +KK+C     ++                          
Sbjct: 135 LFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA 194

Query: 167 WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQ 226
           W+PL+L++PLRLGI  INPVY++  K+C                           F  PQ
Sbjct: 195 WKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQ 227

Query: 227 SLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASR 285
           SLG +GGKPN+A YFIG++G+++IFLDPHT Q      +    +    D T+HC Q   R
Sbjct: 228 SLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVN----DQTFHCLQSPQR 283

Query: 286 LHILHMDPSIAV 297
           ++IL++DPS+A+
Sbjct: 284 MNILNLDPSVAL 295

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  308 bits (790), Expect = e-105
 Identities = 138/314 (43%), Positives = 184/314 (58%), Gaps = 57/314 (18%)

Query: 10  QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
            + ++I  D+ SRLWFTYRK F  IG +G T+D GWGCMLRCGQM+ AQAL+  HLGRDW
Sbjct: 33  TEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDW 92

Query: 70  QWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
           +W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL+KLA
Sbjct: 93  RWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLA 152

Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQ---------------------- 166
            +D WSS+  H+A+DNT+V+ ++++LC T+   +                          
Sbjct: 153 VFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 212

Query: 167 --WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTF 224
             W+PLVL+IPLRLG+ DIN  Y+  +K C                           F  
Sbjct: 213 SPWRPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMM 245

Query: 225 PQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-A 283
           PQSLGVIGGKPN A YFIGYVG ++I+LDP T Q       +  D     D ++HC    
Sbjct: 246 PQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQP----AVEPTDGCFIPDESFHCQHPP 301

Query: 284 SRLHILHMDPSIAV 297
            R+ I  +DPSIAV
Sbjct: 302 CRMSIAELDPSIAV 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d2p82a1	334	Cysteine protease ATG4A {Human (Homo sapiens) [Tax	100.0
d2z0da1	350	Cysteine protease ATG4B {Human (Homo sapiens) [Tax	100.0

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-102  Score=741.65  Aligned_cols=270  Identities=50%  Similarity=1.014  Sum_probs=248.9

Q ss_pred             hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHHHHHHhh
Q psy10465          9 HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYLKILKMF   87 (309)
Q Consensus         9 ~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~~il~~F   87 (309)
                      .++.++|++|++||||||||+|||||+++++|||+|||||||||||||||||+++|+||||||.. .+.+++|.+||+||
T Consensus        14 ~~~~~~~l~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F   93 (334)
T d2p82a1          14 KTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCF   93 (334)
T ss_dssp             TTTHHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTT
T ss_pred             cccHHHHHHHhhhhEEEEccCCCcCCCCCCCcCCcChhHHHHHHHHHHHHHHHHHhcCCccccccccCccHHHHHHHHHh
Confidence            57889999999999999999999999999999999999999999999999999999999999964 55678899999999


Q ss_pred             cCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCCC-----
Q psy10465         88 EDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRAS-----  162 (309)
Q Consensus        88 ~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~~-----  162 (309)
                      .|+++||||||||+++|.++||+||+||||+++|++|++|++++++++++|||+.||++|.+||.++|.......     
T Consensus        94 ~D~~~apfSIH~iv~~g~~~gk~~G~WfgPs~~a~~i~~L~~~~~~~~l~v~v~~d~~v~~~di~~~~~~~~~~~~~~~~  173 (334)
T d2p82a1          94 LDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGD  173 (334)
T ss_dssp             SSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEECBTTEEEHHHHHHHHEECCSCC-----
T ss_pred             cCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhhccccCceEEEecCCCEehhhHHHHhhccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999986543211     


Q ss_pred             -----------------CCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccC
Q psy10465        163 -----------------SNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFP  225 (309)
Q Consensus       163 -----------------~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~p  225 (309)
                                       ....|+|+|||||+|||++++||+|++.||++                           |++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~p~llliplrLGld~iN~~Y~~~L~~~---------------------------l~lp  226 (334)
T d2p82a1         174 RPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMP  226 (334)
T ss_dssp             -----------------CCCEECCEEEEEEEECCSSSCCGGGHHHHHHH---------------------------HHST
T ss_pred             ccccchhhhhcccccccccccCCceEEEEeeecCCCCCCHHHHHHHHHH---------------------------hCCc
Confidence                             13457999999999999999999999999999                           9999


Q ss_pred             ceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecC-CCccccccccCcceEEEee-CCc
Q psy10465        226 QSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCP-QASRLHILHMDPSIAVVSQ-RSY  303 (309)
Q Consensus       226 qsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~-~~~~m~~~~lDPS~~lGFy-~s~  303 (309)
                      ||||||||||++|+||||+|+|+|||||||++|+|+...+.....    +.||||. .+++|++++|||||++||| +|+
T Consensus       227 qsvGiiGGkp~~a~YfiG~q~d~l~YLDPH~~Q~a~~~~~~~~~~----~~s~h~~~~~~~m~~~~lDPS~~lgF~~~~~  302 (334)
T d2p82a1         227 QSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVN----DQTFHCLQSPQRMNILNLDPSVALGFFCKEE  302 (334)
T ss_dssp             TEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSCBC----CGGGBCCSSCEEEEGGGSCSEEEEEEEESSH
T ss_pred             ccceEecCCCCCceEEEEEcCCeEEeecCccccccccccccCCcC----ccceecCCccccCchhhcCCCeEEEEEECCH
Confidence            999999999999999999999999999999999998765433222    5799994 5899999999999999999 999


Q ss_pred             hhhccC
Q psy10465        304 SDYKNV  309 (309)
Q Consensus       304 ~df~dl  309 (309)
                      +||+||
T Consensus       303 ~d~~~~  308 (334)
T d2p82a1         303 KDFDNW  308 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-102  Score=746.20  Aligned_cols=275  Identities=51%  Similarity=0.983  Sum_probs=247.3

Q ss_pred             cccCC-hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHH
Q psy10465          4 ANKLS-HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYL   81 (309)
Q Consensus         4 ~~~~~-~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~   81 (309)
                      |+++. .++.|+|++|++||||||||+|||||+++++|||+|||||||||||||||||+++|+||+|||.. .+.++.|.
T Consensus        26 G~~y~~~~~~~~fl~d~~s~iwfTYR~~F~~i~~s~~TSD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~  105 (350)
T d2z0da1          26 GRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYF  105 (350)
T ss_dssp             TEEECTTTCHHHHHHHHHHSCCCCEEESCCCGGGTSCSBCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHH
T ss_pred             ceeecCCcCHHHHHHHhhheEEEEccCCCcCCCCCCCcCCCchhHHHHHHHHHHHHHHHHHhcCCcccccccccCcHHHH
Confidence            33444 47889999999999999999999999999999999999999999999999999999999999964 45567899


Q ss_pred             HHHHhhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCC
Q psy10465         82 KILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA  161 (309)
Q Consensus        82 ~il~~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~  161 (309)
                      +||+||.|.|+||||||||+++|.+.||+||+||||+++|++|++|++++++++++|||++||+||.+||.++|......
T Consensus       106 ~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~~a~~ik~L~~~~~~~~l~v~va~d~~v~~~di~~l~~~~~~~  185 (350)
T d2z0da1         106 SVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPC  185 (350)
T ss_dssp             HHHHTTSSSTTSTTCHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHTTCTTTCCEEEECCTTEEEHHHHHHHHTCC---
T ss_pred             HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHhhccccCceEEEecCCcEehHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998754211


Q ss_pred             ------------------------CCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCC
Q psy10465        162 ------------------------SSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQT  217 (309)
Q Consensus       162 ------------------------~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~  217 (309)
                                              ....+|+|+|||||+|||++++||+|+++||++                       
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llliplRLG~d~iN~~Y~~~Lk~~-----------------------  242 (350)
T d2z0da1         186 AGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHC-----------------------  242 (350)
T ss_dssp             ----------------------------CCCCEEEEEEEECSSSSCCHHHHHHHHHT-----------------------
T ss_pred             cccccccccccccccccccchhhcccccCCcceEEEEeeecCCCcCCHHHHHHHHHH-----------------------
Confidence                                    114578999999999999999999999999999                       


Q ss_pred             CccccccCceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecCC-CccccccccCcceE
Q psy10465        218 PRYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSIA  296 (309)
Q Consensus       218 ~~~~f~~pqsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~-~~~m~~~~lDPS~~  296 (309)
                          |++||||||+||||++|+||||+|+|+|||||||++|+|++..+....    .+.||||.. +++|++++|||||+
T Consensus       243 ----~~~pqsvGIiGGrP~~a~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~~----~~~S~hc~~~~~~~~~~~lDPSm~  314 (350)
T d2z0da1         243 ----FMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCFI----PDESFHCQHPPCRMSIAELDPSIA  314 (350)
T ss_dssp             ----TSSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCC-----C----CCGGGSCCSSCEEEEGGGCCSEEE
T ss_pred             ----hcchhhceEecCCCCCceEEEEEcCCceEeeccccccccccccccccC----CccceecCCCcCcCChhhcCCCeE
Confidence                999999999999999999999999999999999999999886544332    157999987 56899999999999


Q ss_pred             EEee-CCchhhccC
Q psy10465        297 VVSQ-RSYSDYKNV  309 (309)
Q Consensus       297 lGFy-~s~~df~dl  309 (309)
                      |||| +|++||+|+
T Consensus       315 lGF~~~~~~d~~~~  328 (350)
T d2z0da1         315 VGFFCKTEDDFNDW  328 (350)
T ss_dssp             EEEEESSHHHHHHH
T ss_pred             EEEEECCHHHHHHH
Confidence            9999 999999874