Psyllid ID: psy10490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSNFGVPNP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccEEEEEEccccccEEcccccccEcccccccEEEEcccEEEEEccEEEccHHHHHHccccccc
Coil and Loop (DISEMBL)
mgklghncgqAEIWSVFIAILRKSVRNLQACTDIGLIEHvlnrlphadpvvaethegsygvWIIFEDiregriqegvgaethlsagqdnmlycqgdialvtnrwvfsseqermsnfgvpnp
Flexible Loop (DISEMBL)
mgklghncgqAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSEqermsnfgvpnp
Low Complexity Region (SEG)
MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSNFGVPNP
Disordered region (IsUnstruct)
******NCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVF***************
Disordered Region (DISOPRED)
*******CGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRW*****************
Disordered Region (DISEMBL)
MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSNFGVPNP
Disordered Region (DISPRO)
***LGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSE************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSNFGVPNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9ESE1	2856	Lipopolysaccharide-respon	no	N/A	0.528	0.022	0.430	2e-09
P50851	2863	Lipopolysaccharide-respon	yes	N/A	0.528	0.022	0.430	2e-09
Q8NFP9	2946	Neurobeachin OS=Homo sapi	no	N/A	0.438	0.017	0.535	4e-09
Q9EPN1	2936	Neurobeachin OS=Mus muscu	no	N/A	0.438	0.018	0.535	4e-09
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.363	0.017	0.568	6e-09
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.363	0.017	0.5	4e-07

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
           QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++   D ++A+      GV   +   +
Sbjct: 107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTV 166

Query: 69  REGRI 73
           RE ++
Sbjct: 167 RELKL 171

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.
Mus musculus (taxid: 10090)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
           QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++   D ++A+      GV   +   +
Sbjct: 107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTV 166

Query: 69  REGRI 73
           RE ++
Sbjct: 167 RELKL 171

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 1   MGKLGHNCG---QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           M +L  +C    QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+
Sbjct: 121 MTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIAD 176

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 1   MGKLGHNCG---QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           M +L  +C    QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+
Sbjct: 111 MTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIAD 166

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 36/44 (81%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           Q EIWS+F+A+++KS RNL+ACT +GLI  VL+ LP A P++A+
Sbjct: 206 QNEIWSLFLAVMKKSNRNLEACTRVGLISKVLDILPEAPPLLAD 249

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 6/50 (12%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEH------VLNRLPHADPVVAE 53
           Q EIWS+F+A+++KS RNL+ACT +GLI        VL+ LP A P++A+
Sbjct: 207 QNEIWSLFLAVMKKSNRNLEACTRVGLISKNFFLNLVLDLLPEAPPLLAD 256

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
357627742	2274	hypothetical protein KGM_20142 [Danaus p	0.396	0.021	0.791	1e-13
170041930	668	conserved hypothetical protein [Culex qu	0.363	0.065	0.795	2e-13
270005522	2431	hypothetical protein TcasGA2_TC007591 [T	0.363	0.018	0.840	1e-12
347963011	3676	AGAP000017-PA [Anopheles gambiae str. PE	0.396	0.013	0.75	2e-12
312383424	299	hypothetical protein AND_03454 [Anophele	0.363	0.147	0.795	2e-12
383855622	3257	PREDICTED: neurobeachin-like [Megachile	0.363	0.013	0.818	3e-12
345481241	3146	PREDICTED: neurobeachin-like [Nasonia vi	0.363	0.013	0.795	3e-12
195476931	3643	GE16387 [Drosophila yakuba] gi|194187559	0.363	0.012	0.818	4e-12
221329705	3722	rugose, isoform D [Drosophila melanogast	0.363	0.011	0.818	4e-12
161077567	3712	rugose, isoform C [Drosophila melanogast	0.363	0.011	0.818	4e-12

>gi|357627742|gb|EHJ77332.1| hypothetical protein KGM_20142 [Danaus plexippus]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 41/48 (85%)

Query: 6  HNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
          H   QAEIWSVFIAILRKSVRNLQACTD+GLI HVL RLP A+ VVA+
Sbjct: 11 HFVTQAEIWSVFIAILRKSVRNLQACTDVGLIHHVLQRLPKAETVVAD 58

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041930|ref|XP_001848698.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865510|gb|EDS28893.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
          QAE+WSVFIAIL+KSVRNLQACT+IGLIEHVL RL  A+P+VA+
Sbjct: 41 QAEVWSVFIAILKKSVRNLQACTEIGLIEHVLQRLQRAEPIVAD 84

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005522|gb|EFA01970.1| hypothetical protein TcasGA2_TC007591 [Tribolium castaneum]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 41/44 (93%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           +AEIWSVFIAILRKSVRNLQACTD+GLIEHVL RL +AD VVA+
Sbjct: 235 KAEIWSVFIAILRKSVRNLQACTDVGLIEHVLKRLRNADVVVAD 278

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963011|ref|XP_311142.5| AGAP000017-PA [Anopheles gambiae str. PEST] gi|333467401|gb|EAA06488.5| AGAP000017-PA [Anopheles gambiae str. PEST]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 41/48 (85%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEG 57
           QAE+WSVFIAIL+KSVRNLQACT+IGLIEHVL RL  A+P+VA   E 
Sbjct: 88  QAEVWSVFIAILKKSVRNLQACTEIGLIEHVLARLQQAEPIVAGMSES 135

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383424|gb|EFR28519.1| hypothetical protein AND_03454 [Anopheles darlingi]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           QAE+WSVFIAIL+KSVRNLQACT+IGLIEHVL RL  A+P+VA+
Sbjct: 72  QAEVWSVFIAILKKSVRNLQACTEIGLIEHVLVRLYQAEPIVAD 115

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           QAEIWSVFIAILRKSVRNLQACTD+ LIEHVL+RL  A+ VVA+
Sbjct: 88  QAEIWSVFIAILRKSVRNLQACTDVSLIEHVLHRLSRAETVVAD 131

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481241|ref|XP_001602669.2| PREDICTED: neurobeachin-like [Nasonia vitripennis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           QAEIWSVFIAILRKSVRNLQACTD+ LIEHVL+RL  A+ +VA+
Sbjct: 73  QAEIWSVFIAILRKSVRNLQACTDVNLIEHVLHRLSRAETIVAD 116

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195476931|ref|XP_002100035.1| GE16387 [Drosophila yakuba] gi|194187559|gb|EDX01143.1| GE16387 [Drosophila yakuba]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
          QAEIWSVFIAILRKSVRNLQACTD+GLIEHVL RL  ++ VVA+
Sbjct: 28 QAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVAD 71

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221329705|ref|NP_001138157.1| rugose, isoform D [Drosophila melanogaster] gi|220901675|gb|ACL82890.1| rugose, isoform D [Drosophila melanogaster]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           QAEIWSVFIAILRKSVRNLQACTD+GLIEHVL RL  ++ VVA+
Sbjct: 81  QAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVAD 124

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077567|ref|NP_001036261.2| rugose, isoform C [Drosophila melanogaster] gi|158031718|gb|ABI30968.2| rugose, isoform C [Drosophila melanogaster]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 10  QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
           QAEIWSVFIAILRKSVRNLQACTD+GLIEHVL RL  ++ VVA+
Sbjct: 81  QAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVAD 124

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
ZFIN|ZDB-GENE-041008-137	415	im:7138144 "im:7138144" [Danio	0.495	0.144	0.508	1.3e-10
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.570	0.024	0.464	5.1e-10
MGI|MGI:1933162	2856	Lrba "LPS-responsive beige-lik	0.504	0.021	0.451	9e-09
UNIPROTKB|E1BND6	2786	Bt.111067 "Uncharacterized pro	0.504	0.021	0.451	1.1e-08
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.504	0.021	0.451	1.1e-08
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.504	0.021	0.5	3.7e-08
WB|WBGene00004760	2507	sel-2 [Caenorhabditis elegans	0.363	0.017	0.568	7.4e-08
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.429	0.018	0.557	1.1e-07
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.429	0.017	0.557	1.1e-07
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.429	0.017	0.557	1.1e-07

ZFIN|ZDB-GENE-041008-137 im:7138144 "im:7138144" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query:     1 MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYG 60
             + K    C QAE+WS+F A+L+KS+RNLQACTDIGLI+ VL R+  A+ ++A+      G
Sbjct:    61 LDKCDSTC-QAEVWSMFTAVLKKSLRNLQACTDIGLIQLVLQRIDRAETMIADLMVDMLG 119

Query:    61 V 61
             V
Sbjct:   120 V 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 33/71 (46%), Positives = 48/71 (67%)

Query:     1 MGKLGHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYG 60
             + K   +C QAE+WS+F AIL+KS+RNLQACT++GL+E VL R+  AD ++A+      G
Sbjct:    99 LDKCDISC-QAEVWSMFTAILKKSIRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLG 157

Query:    61 VWIIFE-DIRE 70
             V   +   +RE
Sbjct:   158 VLASYNLTVRE 168

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
             QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++   D ++A+      GV   +   +
Sbjct:   107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTV 166

Query:    69 RE 70
             RE
Sbjct:   167 RE 168

GO:0005764 "lysosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016197 "endosomal transport" evidence=TAS

GO:0051018 "protein kinase A binding" evidence=ISA

UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
             QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++   D ++A+      GV   +   +
Sbjct:    35 QAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTV 94

Query:    69 RE 70
             RE
Sbjct:    95 RE 96

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
             QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++   D ++A+      GV   +   +
Sbjct:   107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTV 166

Query:    69 RE 70
             RE
Sbjct:   167 RE 168

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query:     1 MGKLGHNCG---QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEG 57
             M +L  +C    QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+    
Sbjct:    23 MSELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSTVDDMIADLLVD 82

Query:    58 SYGV 61
               GV
Sbjct:    83 MLGV 86

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

WB|WBGene00004760 sel-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 137 (53.3 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
 Identities = 25/44 (56%), Positives = 36/44 (81%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
             Q EIWS+F+A+++KS RNL+ACT +GLI  VL+ LP A P++A+
Sbjct:   206 QNEIWSLFLAVMKKSNRNLEACTRVGLISKVLDILPEAPPLLAD 249

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040028 "regulation of vulval development" evidence=IGI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0045176 "apical protein localization" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IMP

GO:0016197 "endosomal transport" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGV 61
             QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+      GV
Sbjct:    39 QAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGV 90

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGV 61
             QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+      GV
Sbjct:   123 QAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGV 174

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query:    10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGV 61
             QAEIWS+F AILRKSVRNLQ  T++GLIE VL ++   D ++A+      GV
Sbjct:   133 QAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGV 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  145 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.85u 0.09s 10.94t   Elapsed:  00:00:16
  Total cpu time:  10.85u 0.09s 10.94t   Elapsed:  00:00:16
  Start:  Thu Aug 15 10:49:20 2013   End:  Thu Aug 15 10:49:36 2013

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	89.26

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=89.26  E-value=0.86  Score=38.86  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccccchhccccc
Q psy10490         10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVG   78 (121)
Q Consensus        10 QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~~~~~~~~~~   78 (121)
                      .-.+-++++-|.+.|-..++.|...|++++++..|.+-|-++---.+|++.-||..+.-.+--.+.|+-
T Consensus       177 R~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~  245 (503)
T PF10508_consen  177 RCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIF  245 (503)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHH
Confidence            345788999999999999999999999999999999955555568899999999977655544555543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00