Psyllid ID: psy10508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
Protein Sequence
MLDSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKKKTPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQEEEKEEDWEAKADPEGDADEVMSVEYCYQRNWHKQAVTSFIIGI
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccHHHHHcccccHHHHccHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHcccccHcccccccccccHHHHHHHHHHHHHHcccHHcccccccccccccHccccccHHHHccccccccHHHcccccccHHHccccEEEccccHHHHEHHHEEEcc
Coil and Loop (DISEMBL)
mldsfqlnfdksqlnvvsdkyalykptcdydkksALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMcnstlpiillsdtfdmstldkCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLakffpfsersglniisefnvenitefggdeemdvssneteetdteevdKVKIDFNFYKKFWSLqdyfrnpvqcyNKVSWKMFTSYAETVLAAFKSyklddvqsslnpsgdyFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKsrgeglelksdqeKWVKDTTETVYSLIkqtppdgehFSQVVKLILKGEEHWnqwknegcpelkrpltsitdedkkdepdakkkktpeltklwnskdnleACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSrkcphfflnatpnveknSEFIENMVKRCVkekpssqisgngngvdqdpaevevdtkseEIQEEEKeedweakadpegdadevMSVEYCYQRNWHKQAVTSFIIGI
Flexible Loop (DISEMBL)
mldsfqlnfdksqlnvvsdkyaLYKPTCDYDKKSALEQSIRQYLLKliktpdidIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITefggdeemdvssneteetdteevdkvkIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKsrgeglelksdqekwvKDTTETVYSLikqtppdgehFSQVVKLILKGEEHWNQWknegcpelkrpltsitdedkkdepdakkkktpeltklwnskdnleaCKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLnatpnveknsEFIENMVKRCVKEkpssqisgngngvdqdpaevEVDTkseeiqeeekeedweakadpegdaDEVMSVEYCYQRNWHKQAVTSFIIGI
Low Complexity Region (SEG)
MLDSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNeteetdteevdkvkIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSItdedkkdepdakkkktpeLTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSeeiqeeekeedweakadpeGDADEVMSVEYCYQRNWHKQAVTSFIIGI
Disordered region (IsUnstruct)
**********KSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEF*********************DKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSR***********KWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGC***********************************************************************EQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVK*******************************************************VMSVEYCYQRNWHKQAVTSFII**
Disordered Region (DISOPRED)
**DSFQLNFDKSQLNVV*****************ALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWK**TFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEF***************************FNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAF********************KYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTV***************WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPEL*******************************************RDFTPSLESYFEE******************NDSNYAWRALRLLSRKCPHFFLN***********************************************************************************WHKQAVTSFIIGI
Disordered Region (DISEMBL)
MLDSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGD****************EVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITD*************TPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVK***********NGVDQ*******************************DADEVMSVEYCYQRNWHKQAVTSFIIGI
Disordered Region (DISPRO)
MLDSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGD*******************KVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLD********SGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRP*****************KKTPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEK***********************************************DEVMSVEYCYQRNWHKQAVTSFIIGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKKKTPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQEEEKEEDWEAKADPEGDADEVMSVEYCYQRNWHKQAVTSFIIGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	555	2.2.26 [Sep-21-2011]
Q8R3N6	657	THO complex subunit 1 OS=	yes	N/A	0.818	0.691	0.485	1e-130
Q96FV9	657	THO complex subunit 1 OS=	yes	N/A	0.818	0.691	0.487	1e-129
Q9URT2	752	Uncharacterized protein P	yes	N/A	0.677	0.5	0.279	3e-33
P59924	343	THO complex subunit 1 OS=	no	N/A	0.174	0.282	0.479	5e-20

>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/498 (48%), Positives = 316/498 (63%), Gaps = 44/498 (8%)

Query: 26  PTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENY---ISLCVELCMKDMCNSTLPIIL 82
           P  + +KK  L+Q+ R  L + I    I+    EN    ISL +    + +C ++ P +L
Sbjct: 41  PGSENEKKCTLDQAFRGVLEEEI----INHSACENVLAIISLAIGGVTESVCTASTPFVL 96

Query: 83  LSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFC 142
           L D  D   LD+C+ +F +VE NV  WK  TF+ + KN LLRMCNDLLRRLS+SQNTVFC
Sbjct: 97  LGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFC 156

Query: 143 GRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEE---------------MDVSSNE 187
           GRI LFLA+ FP SE+SGLN+ S+FN+EN+T F  +E+               MDV   E
Sbjct: 157 GRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGE 216

Query: 188 TEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKL 247
             + +      + ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E VLA FKSYKL
Sbjct: 217 MGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKL 276

Query: 248 DDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTV 299
           DD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+LILFQY    V
Sbjct: 277 DDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQV 336

Query: 300 KSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGC 359
           K +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE+WN WKNEGC
Sbjct: 337 KFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGC 396

Query: 360 PELKRPLTSITDED----KKDEPDAKKKKTP---------ELTKLWN-SKDNLEACKSAE 405
           P   +   S T       K+  P+    K P         ELT+LWN   DN+EACKS  
Sbjct: 397 PSFVKERASDTKPTRVVRKRAAPEDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSET 456

Query: 406 RDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVE 465
           R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PHFF       +
Sbjct: 457 REYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFK 516

Query: 466 KNSEFIENMVKRCVKEKP 483
              E++ENMV +  KE P
Sbjct: 517 SLPEYLENMVIKLAKELP 534

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1 (By similarity). Essential for early embryonic development. Required for normal gene expression during postnatal testis development.
Mus musculus (taxid: 10090)

>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1

 Score =  463 bits (1192), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/498 (48%), Positives = 316/498 (63%), Gaps = 44/498 (8%)

Query: 26  PTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENY---ISLCVELCMKDMCNSTLPIIL 82
           P  + +KK  L+Q+ R  L + I    I+    EN    ISL +    + +C ++ P +L
Sbjct: 41  PGSENEKKCTLDQAFRGILEEEI----INHSSCENVLAIISLAIGGVTEGICTASTPFVL 96

Query: 83  LSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFC 142
           L D  D   LD+C+ +F +VE NV  WK  TF+ + KN LLRMCNDLLRRLS+SQNTVFC
Sbjct: 97  LGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFC 156

Query: 143 GRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEE---------------MDVSSNE 187
           GRI LFLA+ FP SE+SGLN+ S+FN+EN+T F  +E+               MDV   E
Sbjct: 157 GRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGE 216

Query: 188 TEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKL 247
             + +      + ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E VLA FKSYKL
Sbjct: 217 MGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKL 276

Query: 248 DDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTV 299
           DD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+LILFQY    V
Sbjct: 277 DDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQV 336

Query: 300 KSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGC 359
           K +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE+WN WKNEGC
Sbjct: 337 KFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGC 396

Query: 360 PELKRPLTSITDED----KKDEPDAKKKKTP---------ELTKLWN-SKDNLEACKSAE 405
           P   +  TS T       K+  P+    K P         ELT+LWN   DN+EACKS  
Sbjct: 397 PSFVKERTSDTKPTRIIRKRTAPEDFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSET 456

Query: 406 RDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVE 465
           R+  P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PHFF       +
Sbjct: 457 REHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFK 516

Query: 466 KNSEFIENMVKRCVKEKP 483
              E++ENMV +  KE P
Sbjct: 517 SLPEYLENMVIKLAKELP 534

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1.

Homo sapiens (taxid: 9606)

>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1

 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 197/448 (43%), Gaps = 72/448 (16%)

Query: 53  IDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQ 112
           +D+ VI N I+       +  C+  LP ++L +  D+ T+++C +L+ Y E   ++ K  
Sbjct: 83  LDLLVIGNEIN-------ESFCDHLLPFLILEELMDIHTVNECAKLYEYFETRPSLMKGI 135

Query: 113 TFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENI 172
                    LLR+ N+LLRRLSR +N+ FCGRI + L+K FP  ERSG N+  ++N   +
Sbjct: 136 VSNRGRGPVLLRISNELLRRLSRQENSSFCGRIDILLSKAFPPEERSGANLRGDYNT--V 193

Query: 173 TEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFT 232
             FG  E    S+  ++ TD     K+   F  Y   W LQ    NP +     +   F 
Sbjct: 194 HSFGKVELSPPSTPISDRTDLSYHKKLNTLFTAY---WDLQCMCSNPPKLLASDTLPKFI 250

Query: 233 SYAETVLAAFKSY------------KLDDVQSSL------NPSGDYFAKYLTNQKLLDLQ 274
             A + + AF+S              +D   SSL           + +KY+ ++ L + Q
Sbjct: 251 DAAGSAIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQ 310

Query: 275 LSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDG 334
           LSD +FR   +LQ +I+F +     K R E   L    EKW   T + V  ++  +  D 
Sbjct: 311 LSDEDFRLQAILQLIIIFDFLLDHSKERIERRTL----EKW---TNKAVIPIVILSDEDT 363

Query: 335 EHFSQV-------------------VKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKK 375
              +++                   +K I+  E +W  WK  GCP L++PL      D+ 
Sbjct: 364 SKLNELSKEAYSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVDKAAIDEA 423

Query: 376 DEPDAKKKKTP----------ELTKLWN--SKDNLEACKSAERDFTPSLESYFEEA-IQQ 422
            E   K   TP           L++LW    ++ L+  K  ER   PS ES+       +
Sbjct: 424 VEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPSPESFLSGVKADK 483

Query: 423 MDPAAAVEEQYKKVNDSNYA---WRALR 447
            +   AV +  K  ++ + A   WRA R
Sbjct: 484 FEIEEAVRDDDKHFHEQSLATKTWRAFR 511

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P59924|THOC1_RAT THO complex subunit 1 OS=Rattus norvegicus GN=Thoc1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 387 ELTKLWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRA 445
           ELT+LWN   DN+EACK   R++ P LE +FEEAI+Q D    VE +YK +N+SNY W  
Sbjct: 115 ELTRLWNLCPDNMEACKLETREYMPILEEFFEEAIEQADAENMVESEYKAINNSNYGWST 174

Query: 446 LRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKP 483
           LR L+ + PHFF       +  +E++ENMV +  KE P
Sbjct: 175 LRFLAWRSPHFFQPTNQQFKNMTEYLENMVIKLAKELP 212

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1. Essential for early embryonic development. Required for normal gene expression during postnatal testis development.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	555
322794008	653	hypothetical protein SINV_10936 [Solenop	0.926	0.787	0.505	1e-157
332017814	653	THO complex subunit 1 [Acromyrmex echina	0.936	0.796	0.504	1e-156
383852527	654	PREDICTED: THO complex subunit 1-like [M	0.893	0.758	0.518	1e-156
350398011	655	PREDICTED: THO complex subunit 1-like [B	0.980	0.830	0.501	1e-156
307174438	654	THO complex subunit 1 [Camponotus florid	0.886	0.752	0.537	1e-155
328784514	654	PREDICTED: THO complex subunit 1-like is	0.823	0.698	0.565	1e-155
380029639	658	PREDICTED: LOW QUALITY PROTEIN: THO comp	0.825	0.696	0.558	1e-155
307213955	653	THO complex subunit 1 [Harpegnathos salt	0.821	0.698	0.553	1e-154
340720907	654	PREDICTED: THO complex subunit 1-like [B	0.980	0.831	0.497	1e-154
345480955	656	PREDICTED: THO complex subunit 1 isoform	0.873	0.739	0.526	1e-152

>gi|322794008|gb|EFZ17246.1| hypothetical protein SINV_10936 [Solenopsis invicta]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/546 (50%), Positives = 379/546 (69%), Gaps = 32/546 (5%)

Query: 3   DSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLK-LIKTPDIDIKVIENY 61
           D  Q +F  S +++   K  + +   + D+K+A++Q++R  LL  L++    +++ +E Y
Sbjct: 13  DYLQQHFKLSDVSLFQKK-CIERYANESDRKAAVDQALRDTLLVVLMENASGNVRSLETY 71

Query: 62  ISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNN 121
           I+ C+ELC KD+  +++P++LL D FD  TLD+CEQLF +VE NVN+WK++ FF +CKNN
Sbjct: 72  ITFCIELCRKDLATASMPVMLLGDIFDSMTLDRCEQLFTFVENNVNVWKEELFFTACKNN 131

Query: 122 LLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEM 181
           LLRMCNDLLRRLSRSQ TVFCGRILLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++  
Sbjct: 132 LLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENHTEFGVEKAE 191

Query: 182 DVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAA 241
           +    +  + D +   K+ ID+N Y+KFW+LQD+FRNP QCYNK+ WK+F+++A  VL+A
Sbjct: 192 EDDLEQITKDDDKLESKIPIDYNLYRKFWALQDFFRNPNQCYNKMHWKVFSAHASNVLSA 251

Query: 242 FKSYKLDDVQS-------------SLNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQF 288
           F S+KL++ +S               +    YFAKYLTNQKLL+LQLSD+NFRRYVLLQF
Sbjct: 252 FASFKLEEQRSYPTTCMKMDTSTEGSHKETHYFAKYLTNQKLLELQLSDSNFRRYVLLQF 311

Query: 289 LILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGE 348
           LILFQY  STVK + E  ELK DQ +WVK TTE VY+L+ +TPPDG  F++ VK ILK E
Sbjct: 312 LILFQYLNSTVKFKAETHELKPDQVEWVKTTTEQVYTLLTETPPDGPMFAETVKNILKRE 371

Query: 349 EHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKK----------------KTPELTKLW 392
           EHWN WKNEGCP  KRP + +  ++ +     K++                  PELTKLW
Sbjct: 372 EHWNAWKNEGCPPFKRPASEVGGDEPRKIRKPKRRIGDMIKDAQAIGKYHMGNPELTKLW 431

Query: 393 N-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSR 451
           N   +NLEACKS +RDF PSLE+YFE+AI ++DPAA V+++YKKVND N+ WRALRLL+R
Sbjct: 432 NLCPNNLEACKSKDRDFLPSLETYFEDAIMELDPAAMVDDKYKKVNDGNFGWRALRLLAR 491

Query: 452 KCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQ 511
           + PHFF++    + K  E++E M+K+  K++P +Q        +  P+E      +E++ 
Sbjct: 492 RSPHFFVHGNNPINKLPEYLEAMIKKIAKDRPQTQSDTKLETEETPPSESTDQEFNEDVL 551

Query: 512 EEEKEE 517
           ++E E+
Sbjct: 552 KQESEQ 557

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017814|gb|EGI58475.1| THO complex subunit 1 [Acromyrmex echinatior]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 281/557 (50%), Positives = 383/557 (68%), Gaps = 37/557 (6%)

Query: 29  DYDKKSALEQSIRQYLLK-LIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTF 87
           D D+K+A++Q++R  LL  L +    +++ +E+YI+ C+ELC KD+  +++P++LL D F
Sbjct: 38  DSDRKAAIDQALRDTLLVVLTENASGNVRSLESYITFCIELCRKDLATASMPVMLLGDIF 97

Query: 88  DMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILL 147
           D  TLD+CEQLF +VE NV +WK++ FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRILL
Sbjct: 98  DSMTLDRCEQLFTFVENNVTVWKEELFFTACKNNLLRMCNDLLRRLSRSQQTVFCGRILL 157

Query: 148 FLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYK 207
           FLAKFFPFSERSGLNI+SEFN+EN TEFG ++  +    +  + D +   K+ ID+N Y+
Sbjct: 158 FLAKFFPFSERSGLNIVSEFNLENQTEFGLEKAEEDDLEQITKDDDKSESKIPIDYNLYR 217

Query: 208 KFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQS----------SLNPS 257
           KFW+LQD+FRNP QCYNK+ WK+F+++A  VL+AF S+KL++ +S          S+  S
Sbjct: 218 KFWALQDFFRNPNQCYNKMHWKVFSAHASNVLSAFASFKLEEQRSYPSTCIKMDTSMEDS 277

Query: 258 G---DYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEK 314
                YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLILFQY  STVK + E  ELK DQ +
Sbjct: 278 HKETHYFAKYLTNQKLLELQLSDSNFRRYVLLQFLILFQYLNSTVKFKAETHELKPDQVE 337

Query: 315 WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDK 374
           WVK  TE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  KRP + ++DE+ 
Sbjct: 338 WVKTITEQVYTLLTETPPDGPTFAETVKNILKREEHWNTWKNEGCPPFKRPASDVSDEEP 397

Query: 375 --------------KDEPDAKK--KKTPELTKLWN-SKDNLEACKSAERDFTPSLESYFE 417
                         +D     K     PELTKLWN   +NLEACKS +RDF PSLE+YFE
Sbjct: 398 RKPRRPKRRIGDVIRDAQTVGKYHMGNPELTKLWNLCPNNLEACKSKDRDFLPSLETYFE 457

Query: 418 EAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKR 477
           +AI ++DPAA V+++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E M+K+
Sbjct: 458 DAIMELDPAAMVDDKYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLETMIKK 517

Query: 478 CVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQEEEKEE------DWEAKADPEGDADE 531
             K++P +Q        +  P+E      +E++ ++E E+      D +A+   +   + 
Sbjct: 518 IAKDRPQTQSDTKLETEETPPSESTDQEFNEDVLKQESEQVDAESADIKARKLNKVTPEM 577

Query: 532 VMSVEYCYQRNWHKQAV 548
           V  +    + +W K A+
Sbjct: 578 VAKLSESLKNDWKKLAI 594

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852527|ref|XP_003701778.1| PREDICTED: THO complex subunit 1-like [Megachile rotundata]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/538 (51%), Positives = 372/538 (69%), Gaps = 42/538 (7%)

Query: 27  TCDYDKKSALEQSIRQYLLKLI-KTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSD 85
           T D D+K+A++Q++R  LL ++ +    +++++E YI+ C+ELC +D+  +++P++LL D
Sbjct: 36  TNDGDRKAAIDQALRDTLLVILSENAANNVQLLETYITFCIELCKRDLATASMPVMLLGD 95

Query: 86  TFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRI 145
            FD  TLD+CEQLF +VE NV +WK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRI
Sbjct: 96  IFDSMTLDRCEQLFTFVENNVVVWKEDLFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRI 155

Query: 146 LLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNF 205
           LLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++       +  + + +   KV ID+N 
Sbjct: 156 LLFLAKFFPFSERSGLNIVSEFNLENFTEFGSEKSEGNDLEQVTKDEDKSETKVPIDYNL 215

Query: 206 YKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSLN 255
           Y+KFW+LQD+FRNP QCY+K+ WK+F+++A +VL+AF S+KL++          + SS+ 
Sbjct: 216 YRKFWALQDFFRNPNQCYSKMYWKVFSAHASSVLSAFSSFKLEEQRTYPSTSIKLDSSME 275

Query: 256 PSGD---YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQ 312
            S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLILFQY  STVK + E  ELK DQ
Sbjct: 276 GSHKETPYFAKYLTNQKLLELQLSDSNFRRYVLLQFLILFQYLNSTVKFKAETHELKPDQ 335

Query: 313 EKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDE 372
             WVK TTE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  K+P     D+
Sbjct: 336 VDWVKATTEQVYALLTETPPDGPAFAETVKNILKREEHWNAWKNEGCPPFKKP-----DQ 390

Query: 373 DKKDEPDAKKKK----------------------TPELTKLWN-SKDNLEACKSAERDFT 409
           D  DE + +K K                       PELTKLWN   +NLEACKS +RDF 
Sbjct: 391 DSIDEEEVRKPKRPRHRIGDVIREAQAVGKYHMGNPELTKLWNLCPNNLEACKSKDRDFL 450

Query: 410 PSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSE 469
           PSLE+YFEEAI Q+DP+A V+++YKKVND N+ WRALRLL+R+ PHFF++    + K  E
Sbjct: 451 PSLETYFEEAIMQLDPSAMVDDEYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPE 510

Query: 470 FIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQEEEKEEDWEAKADPEG 527
           ++E M+K+  K++P +Q        +  P E      SE++ ++E E+     AD + 
Sbjct: 511 YLETMIKKIAKDRPQTQSDTKLETEETPPPEANDQEFSEDVLKQESEQVESENADAKA 568

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398011|ref|XP_003485060.1| PREDICTED: THO complex subunit 1-like [Bombus impatiens]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/586 (50%), Positives = 391/586 (66%), Gaps = 42/586 (7%)

Query: 3   DSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLI-KTPDIDIKVIENY 61
           D  Q  F  S + +   K  + + T D D+K+A++Q++R  LL ++ +    ++ ++E Y
Sbjct: 13  DYLQQCFKLSDIQIFQKK-CVERCTNDSDRKAAIDQALRDTLLVILSENLSSNVPLLETY 71

Query: 62  ISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNN 121
           I+ C+ELC KD+  +++P++LL D FD  TLD+CEQLF +VE NV +WK+  FF +CKNN
Sbjct: 72  ITFCIELCRKDLATASMPVMLLGDIFDSMTLDRCEQLFTFVENNVVVWKEDLFFSACKNN 131

Query: 122 LLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDE-E 180
           LLRMCNDLLRRLSRSQ TVFCGRILLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++ E
Sbjct: 132 LLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENHTEFGSEKSE 191

Query: 181 MDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLA 240
            D   + T++ D  E  KV ID+N Y+KFW+LQD+FRNP Q Y K+ WK+F+++A +VL+
Sbjct: 192 GDDLEHITKDDDKSET-KVPIDYNLYRKFWALQDFFRNPNQLYLKMHWKIFSTHASSVLS 250

Query: 241 AFKSYKLDD----------VQSSLNPSGD---YFAKYLTNQKLLDLQLSDTNFRRYVLLQ 287
           AF S+KL++          V+SS+  S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQ
Sbjct: 251 AFSSFKLEEQRNYPSTCVKVESSMEGSHKETPYFAKYLTNQKLLELQLSDSNFRRYVLLQ 310

Query: 288 FLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKG 347
           FLILFQY  STVK + E  ELK DQ +WVK TTE VY+L+ +TPPDG  F++ VK ILK 
Sbjct: 311 FLILFQYLNSTVKFKAETHELKPDQVEWVKGTTEQVYALLTETPPDGPTFAETVKNILKR 370

Query: 348 EEHWNQWKNEGCPELKRPLT-SITDEDKKDEPDAKKKK-----------------TPELT 389
           EEHWN WKNEGCP  KRP   S  D ++  +P   +++                  PELT
Sbjct: 371 EEHWNAWKNEGCPPFKRPTPDSSADIEESKKPKRPRRRIGDVIRDAQAVGKYHMGNPELT 430

Query: 390 KLWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRL 448
           KLWN   +NLEACKS ERDF PSLE+YFEEAI Q+DP A VE++YKKVND N+ WRALRL
Sbjct: 431 KLWNLCPNNLEACKSKERDFLPSLETYFEEAIMQLDPNAMVEDEYKKVNDGNFGWRALRL 490

Query: 449 LSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSE 508
           L+R+ PHFF++    + K  E++E M+K+  K++P +Q        +  P E      +E
Sbjct: 491 LARRSPHFFVHGNYPINKLPEYLETMIKKIAKDRPQTQSDIKLETEETPPPEANDQEFNE 550

Query: 509 EIQEEEKEEDWEAKADPEG------DADEVMSVEYCYQRNWHKQAV 548
           ++ ++E E+      D +G        D V  +    + +W K A 
Sbjct: 551 DVLKQESEQVEAENTDTKGRKLTKVTPDMVAKLSEILKNDWKKLAT 596

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174438|gb|EFN64939.1| THO complex subunit 1 [Camponotus floridanus]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/527 (53%), Positives = 370/527 (70%), Gaps = 35/527 (6%)

Query: 29  DYDKKSALEQSIRQYLLKLIKTPDID-IKVIENYISLCVELCMKDMCNSTLPIILLSDTF 87
           D D+K+A++Q++R  LL ++     D +  +E YI+ C+ELC KD+  +++P++LL D F
Sbjct: 38  DGDRKAAIDQALRDTLLVILTENASDNVHSLEMYITFCIELCRKDLATASMPVMLLGDIF 97

Query: 88  DMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILL 147
           D  TLDKCEQLF +VE NV IWK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRILL
Sbjct: 98  DSMTLDKCEQLFTFVENNVTIWKEDLFFTACKNNLLRMCNDLLRRLSRSQQTVFCGRILL 157

Query: 148 FLAKFFPFSERSGLNIISEFNVENITEFGGDE-EMDVSSNETEETDTEEVDKVKIDFNFY 206
           FLAKFFPFSERSGLNI+SEFN+EN TEFG ++ E D     T++ D  E +K+ ID+N Y
Sbjct: 158 FLAKFFPFSERSGLNIVSEFNLENHTEFGSEKVEGDDLEQITKDDDKSE-NKIPIDYNLY 216

Query: 207 KKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSLNP 256
           +KFW+LQD+FRNP QCY KV WK+F+++A  VL+AF S+KL+D          + SS+  
Sbjct: 217 RKFWALQDFFRNPNQCYVKVHWKVFSAHASNVLSAFASFKLEDQRSYPTTCINMDSSMEG 276

Query: 257 S---GDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQE 313
           S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLI+FQY  STVK + E  ELK DQ 
Sbjct: 277 SYKETHYFAKYLTNQKLLELQLSDSNFRRYVLLQFLIVFQYLNSTVKFKAETHELKPDQV 336

Query: 314 KWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDED 373
           +WVK TTE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  KRP + I D D
Sbjct: 337 EWVKTTTEQVYALLTETPPDGPAFAETVKNILKREEHWNAWKNEGCPPFKRPASDIIDGD 396

Query: 374 K----------------KDEPDAKKKKTP--ELTKLWN-SKDNLEACKSAERDFTPSLES 414
           +                +D     K      ELTKLWN   +NLEACKS +RDF PSLE+
Sbjct: 397 EEPRKPKRPKRRIGDVIRDAQAVGKYHMGNLELTKLWNLCPNNLEACKSKDRDFLPSLET 456

Query: 415 YFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENM 474
           YFE+AI ++DPAA V+++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E M
Sbjct: 457 YFEDAIMELDPAAMVDDKYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLETM 516

Query: 475 VKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEEIQEEEKEEDWEA 521
           +K+  K++P +Q        +  P+E      +E++ +++ E+D E+
Sbjct: 517 IKKIAKDRPQTQSDTKLETEETPPSESNDQEFNEDVLKQDSEQDSES 563

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784514|ref|XP_393145.3| PREDICTED: THO complex subunit 1-like isoform 1 [Apis mellifera]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/492 (56%), Positives = 357/492 (72%), Gaps = 35/492 (7%)

Query: 27  TCDYDKKSALEQSIRQYLLKLIKTPDID-IKVIENYISLCVELCMKDMCNSTLPIILLSD 85
           T D D+K+A++Q++R  LL ++    ++ ++++E YI+ C+ELC KD+  +++P++LL D
Sbjct: 36  TNDSDRKAAIDQALRDTLLVILSENALNNVQLLETYITFCIELCRKDLATASMPVMLLGD 95

Query: 86  TFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRI 145
            FD  TLD+CEQLF +VE NV +WK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRI
Sbjct: 96  IFDSMTLDRCEQLFTFVENNVVVWKEDLFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRI 155

Query: 146 LLFLAKFFPFSERSGLNIISEFNVENITEFGGDE-EMDVSSNETEETDTEEVDKVKIDFN 204
           LLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++ E D     T++ D  E  KV ID+N
Sbjct: 156 LLFLAKFFPFSERSGLNIVSEFNLENHTEFGSEKSEGDDLEQITKDDDKSET-KVPIDYN 214

Query: 205 FYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSL 254
            Y+KFW+LQD+FRNP QCY K+ WK+F+++A +VL+AF S+KL++          V SS+
Sbjct: 215 LYRKFWALQDFFRNPNQCYQKMHWKVFSAHASSVLSAFSSFKLEEQRNYPSTCIKVDSSI 274

Query: 255 NPSGD---YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSD 311
             S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLILFQY  STVK + E  ELK D
Sbjct: 275 EGSHKETPYFAKYLTNQKLLELQLSDSNFRRYVLLQFLILFQYLNSTVKFKAETHELKPD 334

Query: 312 QEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLT-SIT 370
           Q  WVK TTE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  K+P   S T
Sbjct: 335 QVDWVKATTEQVYALLTETPPDGPTFAETVKNILKREEHWNAWKNEGCPAFKKPAPDSST 394

Query: 371 DEDKKDEPDAKKKK-----------------TPELTKLWN-SKDNLEACKSAERDFTPSL 412
           D +   +P   K++                  PELTKLWN   +NLEACKS ERDF PSL
Sbjct: 395 DIEDLRKPKRPKRRIGDVIRDAQTVGKYHMGNPELTKLWNLCPNNLEACKSKERDFLPSL 454

Query: 413 ESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIE 472
           E+YFEEAI Q+DP A VE++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E
Sbjct: 455 ETYFEEAIMQLDPNAMVEDEYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLE 514

Query: 473 NMVKRCVKEKPS 484
            M+K+  K++P+
Sbjct: 515 TMIKKIAKDRPT 526

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029639|ref|XP_003698475.1| PREDICTED: LOW QUALITY PROTEIN: THO complex subunit 1-like [Apis florea]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/491 (55%), Positives = 354/491 (72%), Gaps = 33/491 (6%)

Query: 27  TCDYDKKSALEQSIRQYLLKLIKTPDI-DIKVIENYISLCVELCMKDMCNSTLPIILLSD 85
           T D D+K+A++Q++R  LL ++    + +++++E YI+ C+ELC KD+  +++P++LL D
Sbjct: 36  TNDSDRKAAIDQALRDTLLVILSENALSNVQLLETYITFCIELCRKDLATASMPVMLLGD 95

Query: 86  TFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRI 145
            FD  TLD+CEQLF +VE NV +WK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRI
Sbjct: 96  IFDSMTLDRCEQLFTFVENNVVVWKEDLFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRI 155

Query: 146 LLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNF 205
           LLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++       +  + D +   KV ID+N 
Sbjct: 156 LLFLAKFFPFSERSGLNIVSEFNLENHTEFGSEKSEGDDLEQINKDDDKSEIKVPIDYNL 215

Query: 206 YKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSLN 255
           Y+KFW+LQD+FRNP QCY K+ WK+F+++A +VL+AF S+KL++          V SS+ 
Sbjct: 216 YRKFWALQDFFRNPNQCYQKMHWKVFSAHASSVLSAFSSFKLEEQRNYPSTCIKVDSSIE 275

Query: 256 PSGD---YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQ 312
            S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLILFQY  STVK + E  ELK DQ
Sbjct: 276 GSHKETPYFAKYLTNQKLLELQLSDSNFRRYVLLQFLILFQYLNSTVKFKAETHELKPDQ 335

Query: 313 EKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLT-SITD 371
             WVK TTE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  K+P   S TD
Sbjct: 336 VDWVKATTEQVYALLTETPPDGPTFAETVKNILKREEHWNAWKNEGCPAFKKPTPDSSTD 395

Query: 372 EDKKDEPDAKKKK-----------------TPELTKLWN-SKDNLEACKSAERDFTPSLE 413
            +   +P   K++                  PELTKLWN   +NLEACKS ERDF PSLE
Sbjct: 396 IEDLRKPKRPKRRIGDVIRDAQTVGKYHMGNPELTKLWNLCPNNLEACKSKERDFLPSLE 455

Query: 414 SYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIEN 473
           +YFEEAI Q+DP A VE++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E 
Sbjct: 456 TYFEEAIMQLDPNAMVEDEYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLET 515

Query: 474 MVKRCVKEKPS 484
           M+K+  K++P+
Sbjct: 516 MIKKIAKDRPT 526

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213955|gb|EFN89189.1| THO complex subunit 1 [Harpegnathos saltator]

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/488 (55%), Positives = 353/488 (72%), Gaps = 32/488 (6%)

Query: 29  DYDKKSALEQSIRQYLL-KLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTF 87
           D D+K+A++Q++R  LL  L +    ++  +E YI+ C+ELC KD+  +++P++LL D F
Sbjct: 38  DGDRKAAVDQALRDTLLIVLTENSSGNVHSLELYITFCIELCRKDLATASMPVMLLGDIF 97

Query: 88  DMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILL 147
           D  TLD+CEQLF +VE NV++WK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRILL
Sbjct: 98  DSVTLDRCEQLFTFVEDNVSVWKEDLFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRILL 157

Query: 148 FLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYK 207
           FLAKFFPFSERSGLNI+SEFN+EN TEFG ++       +  + D +  +K+ ID+N Y+
Sbjct: 158 FLAKFFPFSERSGLNIVSEFNLENYTEFGSEKTEGDDLEQINKDDDKSENKIPIDYNLYR 217

Query: 208 KFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSLNPS 257
           KFW+LQDYFRNP QCYNK+ WK+F+++A  VL+AF S+KL++          + SS+  S
Sbjct: 218 KFWALQDYFRNPNQCYNKMHWKVFSAHASNVLSAFSSFKLEEQRSYPTTCIKMDSSMEGS 277

Query: 258 G---DYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEK 314
                YFAKYLTNQKLL+LQLSD+NFRRYVLLQFLILFQY  STVK + E  ELK DQ +
Sbjct: 278 HKETHYFAKYLTNQKLLELQLSDSNFRRYVLLQFLILFQYLNSTVKFKAETHELKPDQVE 337

Query: 315 WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDK 374
           WVK TTE VY+L+ +TPPDG  F++ VK ILK EEHWN WKNEGCP  KRP + I  +++
Sbjct: 338 WVKTTTEQVYALLTETPPDGPAFAETVKNILKREEHWNAWKNEGCPPFKRPTSDIAADEE 397

Query: 375 ---------------KDEPDAKK--KKTPELTKLWN-SKDNLEACKSAERDFTPSLESYF 416
                          +D     K     PELTKLWN   DNLEACKS +RDF PSLE+YF
Sbjct: 398 PRKPKRPRRRIGDVIRDAQTVGKYHMGNPELTKLWNLCPDNLEACKSKDRDFLPSLETYF 457

Query: 417 EEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVK 476
           E+AI ++DPAA ++++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E M+K
Sbjct: 458 EDAIVELDPAAMIDDKYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLETMIK 517

Query: 477 RCVKEKPS 484
           +  K++P+
Sbjct: 518 KIAKDRPT 525

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720907|ref|XP_003398870.1| PREDICTED: THO complex subunit 1-like [Bombus terrestris]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/585 (49%), Positives = 387/585 (66%), Gaps = 41/585 (7%)

Query: 3   DSFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLI-KTPDIDIKVIENY 61
           D  Q  F  S + +   K  + + T D D+K+A++Q++R  LL ++ +    ++ ++E Y
Sbjct: 13  DYLQQCFKLSDIQIFQKK-CVERCTNDSDRKAAIDQALRDTLLVILSENVSSNVPLLETY 71

Query: 62  ISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNN 121
           I+ C+ELC KD+  +++P++LL D FD  TLD+CEQLF +VE NV +WK+  FF +CKNN
Sbjct: 72  ITFCIELCRKDLATASMPVMLLGDIFDSMTLDRCEQLFTFVENNVVVWKEDLFFSACKNN 131

Query: 122 LLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEM 181
           LLRMCNDLLRRLSRSQ TVFCGRILLFLAKFFPFSERSGLNI+SEFN+EN TEFG ++  
Sbjct: 132 LLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENHTEFGSEKSE 191

Query: 182 DVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAA 241
                +  + D +   KV ID+N Y+KFW+LQD+FRNP Q Y K+ WK+F+++A +VL+A
Sbjct: 192 GDDLEQITKDDDKSDTKVPIDYNLYRKFWALQDFFRNPNQLYLKMHWKIFSTHASSVLSA 251

Query: 242 FKSYKLDD----------VQSSLNPSGD---YFAKYLTNQKLLDLQLSDTNFRRYVLLQF 288
           F S+KL++          V+SS+  S     YFAKYLTNQKLL+LQLSD+NFRRYVLLQF
Sbjct: 252 FSSFKLEEQRNYPSTCVKVESSMEGSHKETPYFAKYLTNQKLLELQLSDSNFRRYVLLQF 311

Query: 289 LILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGE 348
           LILFQY  STVK + E  ELK DQ +WVK TTE VY+L+ +TPPDG  F++ VK ILK E
Sbjct: 312 LILFQYLNSTVKFKAETHELKPDQVEWVKGTTEQVYALLTETPPDGPTFAETVKNILKRE 371

Query: 349 EHWNQWKNEGCPELKRPLT-SITDEDKKDEPDAKKKK-----------------TPELTK 390
           EHWN WKNEGCP  KRP   S  D ++  +P   ++K                  PELTK
Sbjct: 372 EHWNAWKNEGCPPFKRPTPDSSADIEESKKPKRPRRKIGDVIRDAQAVGKYHMGNPELTK 431

Query: 391 LWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLL 449
           LWN   +NLEACKS ERDF PSLE+YFEEAI Q+DP A VE++YKKVND N+ WRALRLL
Sbjct: 432 LWNLCPNNLEACKSKERDFLPSLETYFEEAIMQLDPNAMVEDEYKKVNDGNFGWRALRLL 491

Query: 450 SRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEE 509
           +R+ PHFF++    + K  E++E M+K+  K++P +Q        +  P E      +E+
Sbjct: 492 ARRSPHFFVHGNYPINKLPEYLETMIKKIAKDRP-TQSDIKLETEETPPPEANDQEFNED 550

Query: 510 IQEEEKEEDWEAKADPEG------DADEVMSVEYCYQRNWHKQAV 548
           + ++E E+      D +G        D V  +    + +W K A 
Sbjct: 551 VLKQESEQVEAENTDTKGRKLTKVTPDMVAKLSEILKNDWKKLAT 595

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480955|ref|XP_001607027.2| PREDICTED: THO complex subunit 1 isoform 1 [Nasonia vitripennis]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/519 (52%), Positives = 361/519 (69%), Gaps = 34/519 (6%)

Query: 29  DYDKKSALEQSIRQYLLKLIKTPDID-IKVIENYISLCVELCMKDMCNSTLPIILLSDTF 87
           D D+K A++Q++R  L+ ++     +  + +E+YI  C+ELC KD+  +++P++LLSD F
Sbjct: 38  DKDRKPAIDQALRDTLVIILSNNATNNTRTLESYIKFCIELCRKDLATTSMPVMLLSDMF 97

Query: 88  DMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILL 147
           D  TL+ CE LF YVE NV+ WK+  FF +CKNNLLRMCNDLLRRLSRSQ TVFCGRILL
Sbjct: 98  DALTLNLCEDLFTYVENNVSTWKEDLFFGACKNNLLRMCNDLLRRLSRSQQTVFCGRILL 157

Query: 148 FLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYK 207
           FLAKFFPFSERSGLNI+SEFN+ENITEFG ++  +    + E    +   K+ ID+N Y+
Sbjct: 158 FLAKFFPFSERSGLNIVSEFNLENITEFGSEKSEEEVIQQMEVDGEKSETKISIDYNLYR 217

Query: 208 KFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD----------VQSSLNPS 257
           KFW+LQD+FRNP QCYNK+ WK F+++A  VL+ F S+KL+D          ++S L+  
Sbjct: 218 KFWALQDFFRNPNQCYNKMHWKCFSTHATNVLSTFASFKLEDQKDCIIDHLKIESLLDGR 277

Query: 258 ---GDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEK 314
                YFAKYLTN+KLL+LQLSD+NFRR+VLLQFLILFQY  STVK + E  ELK DQ +
Sbjct: 278 YKDNHYFAKYLTNEKLLELQLSDSNFRRFVLLQFLILFQYLNSTVKFKSETHELKPDQVE 337

Query: 315 WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTS-ITDED 373
           WV  TTE VY L+ +TPPDG  F++ VK ILK EE+WN WKNEGCP  KRP    +T+ D
Sbjct: 338 WVNTTTEQVYLLLTETPPDGAAFAEAVKHILKREEYWNSWKNEGCPAFKRPAPEPMTEAD 397

Query: 374 KKDEPDAKKKKTP-----------------ELTKLWN-SKDNLEACKSAERDFTPSLESY 415
           +  +P   ++K                   ELTKLWN   +NLEACKS +RDF PSLE+Y
Sbjct: 398 EARKPKRLRRKIGDLIRDAQAVGKYYMGNQELTKLWNLCPNNLEACKSKDRDFLPSLETY 457

Query: 416 FEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMV 475
           FEEAI+Q+DPAAA+E++YKKVND N+ WRALRLL+R+ PHFF++    + K  E++E M+
Sbjct: 458 FEEAIEQLDPAAAIEDEYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLQEYLEIMI 517

Query: 476 KRCVKEKPSSQISGNGNGVDQDPAE-VEVDTKSEEIQEE 513
           K+  K++P  Q        +  P+E +E D   E +++E
Sbjct: 518 KKIAKDRPQVQTDIKQEAGETPPSEQIEQDFNEETLKQE 556

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	555
FB|FBgn0037382	701	Hpr1 "Hpr1" [Drosophila melano	0.448	0.355	0.476	7.1e-109
UNIPROTKB|E2RNV0	657	THOC1 "Uncharacterized protein	0.571	0.482	0.479	1.4e-80
UNIPROTKB|F1MJV3	660	THOC1 "Uncharacterized protein	0.571	0.480	0.479	1.4e-80
UNIPROTKB|F1NMW7	547	THOC1 "Uncharacterized protein	0.571	0.579	0.488	1.8e-80
UNIPROTKB|Q96FV9	657	THOC1 "THO complex subunit 1"	0.571	0.482	0.479	4.7e-80
UNIPROTKB|D4ABL0	657	Thoc1 "THO complex subunit 1"	0.571	0.482	0.476	6e-80
MGI|MGI:1919668	657	Thoc1 "THO complex 1" [Mus mus	0.571	0.482	0.476	6e-80
UNIPROTKB|I3LE05	662	THOC1 "Uncharacterized protein	0.551	0.462	0.484	8.7e-79
ZFIN|ZDB-GENE-030826-9	655	thoc1 "THO complex 1" [Danio r	0.551	0.467	0.483	3e-78
UNIPROTKB|J9NUJ3	499	THOC1 "Uncharacterized protein	0.255	0.284	0.537	4.7e-71

FB|FBgn0037382 Hpr1 "Hpr1" [Drosophila melanogaster (taxid:7227)]

 Score = 648 (233.2 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
 Identities = 120/252 (47%), Positives = 172/252 (68%)

Query:     4 SFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYIS 63
             + +L     ++ ++  +Y  +    ++DK+  ++ + R  L+K +   D D+  I   + 
Sbjct:    28 ALELAITDGKVELLVKEYNRFPANTEHDKRLPMDHAFRVLLMKRL---DEDVSRIGELVR 84

Query:    64 LCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLL 123
             L VE    ++ ++T+P++LL DTFD+ TLDKC+++F +VE  V +WK++ FF SCKNN+L
Sbjct:    85 LSVEATRAEIVSNTIPVVLLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNIL 144

Query:   124 RMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDV 183
             RMCNDLLRRLSR+QNTVFCGRI LFL+KFFPFSERSGLNI+SEFN++N TE+G D +   
Sbjct:   145 RMCNDLLRRLSRTQNTVFCGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDSKDHD 204

Query:   184 SSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFK 243
              S+              ID++ Y KFWSLQD+FRNP QCYNK  WKMF  +A+ +L +F 
Sbjct:   205 ESDNKELEDTAEDIPLKIDYDLYCKFWSLQDFFRNPNQCYNKPQWKMFQMHADNILQSFS 264

Query:   244 SYKLDDVQSSLN 255
             S+KL+DV+ S N
Sbjct:   265 SFKLEDVRQSSN 276

GO:0005654 "nucleoplasm" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=NAS

GO:0031990 "mRNA export from nucleus in response to heat stress" evidence=IMP

GO:0000347 "THO complex" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E2RNV0 THOC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 165/344 (47%), Positives = 210/344 (61%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   207 EEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 266

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   267 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 326

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   327 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 386

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +  TS                                LT+LWN   
Sbjct:   387 NWNSWKNEGCPSFVKERTSDTKPTRVARKRTAPEDFLGKGPNKKILMGNEELTRLWNLCP 446

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   447 DNMEACKSETREYMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPH 506

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   507 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 547

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MJV3 THOC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 165/344 (47%), Positives = 210/344 (61%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   210 EEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 269

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   270 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 329

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   330 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 389

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +  TS                                LT+LWN   
Sbjct:   390 NWNSWKNEGCPSFVKERTSDSKPTRAVRKRAAPEDFLGKGPSKKILMGNDELTRLWNLCP 449

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   450 DNMEACKSETREYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPH 509

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   510 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 550

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NMW7 THOC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 168/344 (48%), Positives = 210/344 (61%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             DE MDV                 ID+N Y+KFWSLQDYFRNPVQCY KVSWK F  Y+E 
Sbjct:    96 DEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEE 155

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   156 VLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 215

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT+ VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   216 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQLLSENPPDGERFSKMVEHILNTEE 275

Query:   350 HWNQWKNEGCPEL--KRPLTSIXXXXXXXXXX-----------XXXXXXXXLTKLWN-SK 395
             +WN WKNEGCP    +RP  S                              LT+LWN   
Sbjct:   276 NWNSWKNEGCPSFVKERPPDSKPMRPARKRPAPEDFLGKGPNKKILMGNEELTRLWNLCP 335

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   336 DNMEACKSESREYMPTLEEFFEEAIEQADPENMVENKYKAVNNSNYGWRALRLLARRSPH 395

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   396 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 436

GO:0007165 "signal transduction" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

UNIPROTKB|Q96FV9 THOC1 "THO complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 165/344 (47%), Positives = 209/344 (60%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   207 EEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 266

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   267 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 326

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   327 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 386

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +  TS                                LT+LWN   
Sbjct:   387 NWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPEDFLGKGPTKKILMGNEELTRLWNLCP 446

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R+  P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   447 DNMEACKSETREHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPH 506

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   507 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 547

GO:0007165 "signal transduction" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000346 "transcription export complex" evidence=IDA

GO:0000347 "THO complex" evidence=IDA

GO:0000445 "THO complex part of transcription export complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006396 "RNA processing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|D4ABL0 Thoc1 "THO complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 164/344 (47%), Positives = 209/344 (60%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   207 EEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 266

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   267 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 326

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   327 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 386

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +   S                                LT+LWN   
Sbjct:   387 NWNSWKNEGCPSFVKERASDTKPTRVVRKRAAPEDFLGKGPNKKILIGNEELTRLWNLCP 446

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   447 DNMEACKSETREYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPH 506

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   507 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 547

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:1919668 Thoc1 "THO complex 1" [Mus musculus (taxid:10090)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 164/344 (47%), Positives = 209/344 (60%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   207 EEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 266

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   267 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 326

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   327 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 386

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +   S                                LT+LWN   
Sbjct:   387 NWNSWKNEGCPSFVKERASDTKPTRVVRKRAAPEDFLGKGPNKKILIGNEELTRLWNLCP 446

Query:   396 DNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPH 455
             DN+EACKS  R++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ PH
Sbjct:   447 DNMEACKSETREYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPH 506

Query:   456 FFLNATPNVEKNSEFIENMVKRCVKE--KPSSQISGNGNGVDQD 497
             FF       +   E++ENMV +  KE   PS +I     G D+D
Sbjct:   507 FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIK---TGEDED 547

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO;RCA

GO:0007165 "signal transduction" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=RCA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

UNIPROTKB|I3LE05 THOC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 160/330 (48%), Positives = 203/330 (61%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFWSLQDYFRNPVQCY K+SWK F  Y+E 
Sbjct:   210 EEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE 269

Query:   238 VLAAFKSYKLDDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFL 289
             VLA FKSYKLDD Q+S      L   G+  YFAK+LT++KL+DLQLSD+NFRR++LLQ+L
Sbjct:   270 VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYL 329

Query:   290 ILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349
             ILFQY    VK +     L  +Q  W++DTT++VY L+ + PPDGE FS++V+ IL  EE
Sbjct:   330 ILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEE 389

Query:   350 HWNQWKNEGCPELKRPLTSIXXXXXXXXXXXX-------------XXXXXXLTKLWN-SK 395
             +WN WKNEGCP   +  TS                                LT+LWN   
Sbjct:   390 NWNSWKNEGCPSFVKERTSDTKPTRVVRKRTAPEDFLGKGPNKKILMGNEELTRLWNLCP 449

Query:   396 DNLEACKSAER--DFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKC 453
             DN+EACKS  R  ++ P+LE +FEEAI+Q DP   VE +YK VN+SNY WRALRLL+R+ 
Sbjct:   450 DNMEACKSETRPREYMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRS 509

Query:   454 PHFFLNATPNVEKNSEFIENMVKRCVKEKP 483
             PHFF       +   E++ENMV +  KE P
Sbjct:   510 PHFFQPTNQQFKSLPEYLENMVIKLAKELP 539

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030826-9 thoc1 "THO complex 1" [Danio rerio (taxid:7955)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 159/329 (48%), Positives = 205/329 (62%)

Query:   178 DEEMDVSSNXXXXXXXXXXXXXXIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAET 237
             +E MDV                 ID+N Y+KFW+LQDYFRNPVQCY+K SW  F  Y++ 
Sbjct:   207 EEGMDVEEGEMGDEDAPAPSSIPIDYNLYRKFWTLQDYFRNPVQCYDKFSWMTFIKYSDE 266

Query:   238 VLAAFKSYKLDDVQSSLNP-------SGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQF 288
              LA FKS+KLDD+Q+S          SGD  YFAK+LT++KL+DLQLSD+NFRR++LLQ+
Sbjct:   267 ALAVFKSFKLDDMQASKKKLEEMRTSSGDHVYFAKFLTSEKLMDLQLSDSNFRRHILLQY 326

Query:   289 LILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGE 348
             LILFQY    VK +     L  DQ  W++DTT+ VY L+K+ PPDG+ F  +V+ IL  E
Sbjct:   327 LILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKLVYQLLKEIPPDGDKFGSMVEHILNTE 386

Query:   349 EHWNQWKNEGCPEL--KRPLTS--IXXXXXXXX---------XXXXXXXXXXLTKLWN-S 394
             E+WN WKNEGCP    +RP  +  I                           LT+LWN +
Sbjct:   387 ENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAPEDFLGKGPDRKILMGNDELTRLWNLN 446

Query:   395 KDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCP 454
              DN+EACKS  R+F PSLE +FEEAI+Q DPA  VE++YK V +SNY WRALRLLSR+ P
Sbjct:   447 PDNMEACKSENREFMPSLEDFFEEAIEQADPANMVEDEYKVVRNSNYGWRALRLLSRRSP 506

Query:   455 HFFLNATPNVEKNSEFIENMVKRCVKEKP 483
             HFF       +  ++++ENMV +  KE P
Sbjct:   507 HFFQPTNQQFKSLADYLENMVIKLAKELP 535

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|J9NUJ3 THOC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 4.7e-71, Sum P(3) = 4.7e-71
 Identities = 85/158 (53%), Positives = 105/158 (66%)

Query:   159 SGLNIISEFNVENITEFGGDEE--------MDVSSNXXXXXXXXXXXXXXIDFNFYKKFW 210
             S LN+ S+FN+EN+T F  +E+        MDV                 ID+N Y+KFW
Sbjct:    93 SSLNLQSQFNLENVTVFNTNEQHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFW 152

Query:   211 SLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSS------LNPSGD--YFA 262
             SLQDYFRNPVQCY K+SWK F  Y+E VLA FKSYKLDD Q+S      L   G+  YFA
Sbjct:   153 SLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFA 212

Query:   263 KYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVK 300
             K+LT++KL+DLQLSD+NFRR++LLQ+LILFQY    VK
Sbjct:   213 KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVK 250

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R3N6	THOC1_MOUSE	No assigned EC number	0.4859	0.8180	0.6910	yes	N/A
Q96FV9	THOC1_HUMAN	No assigned EC number	0.4879	0.8180	0.6910	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	555
pfam11957	494	pfam11957, efThoc1, THO complex subunit 1 transcri	1e-120

>gnl|CDD|221339 pfam11957, efThoc1, THO complex subunit 1 transcription elongation factor

 Score =  363 bits (933), Expect = e-120
 Identities = 162/494 (32%), Positives = 233/494 (47%), Gaps = 75/494 (15%)

Query: 56  KVIENYISLCVELC--MKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQT 113
           K + N +     L    +  C   L   LL +  D  T+D C +LF Y+E     +K+  
Sbjct: 1   KNLWNLLDFVSILSDNEQPFCEPGLLFFLLEELLDSLTIDGCRKLFDYLESRREWFKKGH 60

Query: 114 FFMSCKNN-LLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENI 172
           FF   KN  LLR CN+LLRRLSR+++TVFCGRIL+FL++ FP SE+S +N+  EFN EN+
Sbjct: 61  FFQPVKNGVLLRTCNELLRRLSRTEDTVFCGRILIFLSQLFPLSEKSNVNLRGEFNTENV 120

Query: 173 TEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYN-KVSWKMF 231
           T +  +           + +T   D + +D+N Y  FWSLQDYF NP + ++    +  F
Sbjct: 121 TTWDQEI---------GKDETSSSDSIDVDYNLYPIFWSLQDYFSNPTKLFSPLEEFATF 171

Query: 232 TSYAETVLAAFKSYKLDDVQSS-------------LNP------------SGDYFAKYLT 266
            S  E  L AF   + +                  LN             S  +  KYLT
Sbjct: 172 KSGLEATLQAFLEIETELYNKIKSKTAEIKVDSRALNKRKRNPLDGEELASSFFNPKYLT 231

Query: 267 NQKLLDLQLSDTNFRRYVLLQFLILFQYFTS------------TVKSRGEGLELKSDQEK 314
           ++ L +L+LSD+NFRR VL+Q LILF +  S            T KS      L  + +K
Sbjct: 232 SRDLFELELSDSNFRRQVLVQVLILFDFLLSLTKKDKAKLAYNTNKSVIYSDVLSDEDKK 291

Query: 315 WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDK 374
           W+K T + V   +K+  P G+ F ++V+ +L  EE+W +WKNEGCP  ++P T   D+  
Sbjct: 292 WIKFTKKKVEKRLKEFYPKGKKFYRMVEHLLSREENWVRWKNEGCPSFEKPHTV--DKIS 349

Query: 375 KDEPDAKKKK-------------TPELTKLWNSKD--NLEACKSAERDFTPSLESYFEEA 419
             E +   KK                L  LW  K    L+  K  ER   P LE Y +  
Sbjct: 350 VPEAEEAFKKRGFPKRLLGIKMGNKNLNFLWEKKIDSGLDRLKDEERYRIPPLEVYLDGI 409

Query: 420 IQ---QMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFF--LNATPNVEKNSEFIENM 474
            +   ++DPA   E++    N     WRALRLL R     F  +N    ++      E +
Sbjct: 410 AEDKFEIDPANTDEKEEAAENKIVKTWRALRLLRRSYLFEFDKINEKTGLK---GLFEEI 466

Query: 475 VKRCVKEKPSSQIS 488
            K+  KEK   +  
Sbjct: 467 RKKAAKEKKDPREE 480

The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1. The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	555
KOG2491|consensus	674		100.0
PF11957	491	efThoc1: THO complex subunit 1 transcription elong	100.0

>KOG2491|consensus

Probab=100.00  E-value=7e-137  Score=1092.41  Aligned_cols=474  Identities=46%  Similarity=0.830  Sum_probs=439.3

Q ss_pred             hHHHhhccCChhhHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcccccccchHHHH
Q psy10508          4 SFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILL   83 (555)
Q Consensus         4 ~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~A~R~~l~~l~~~~~id~~~l~~ll~l~~~~~~~~~c~~~lpf~Ll   83 (555)
                      +.+.|+.+..++.+.+.|.+.+|.+.++++-.+++|+|-.+.+.+.+   ++..|.+||++++.+++.|+|+.++||+||
T Consensus        27 ~~~ta~~~e~v~~lv~~f~~~~~~~~a~~~~~~~~~~~~~lee~l~~---~~~~I~~ll~vv~~~~~~~~cs~~~Pf~lL  103 (674)
T KOG2491|consen   27 SKRTALNNENVELLVSTFLQVPGFSEAEKKCTLAQAFRGILEERLDN---HFHCILALLSVVINGVTEGICSASTPFVLL  103 (674)
T ss_pred             HHHHHHhhhhHHHHHHHHHhCchhhhhhhhchHHhhhhhhhHHHHHh---HhhhhHHHHHHHHHhhhHhhhcCCccHHHH
Confidence            56778889999999999999999999999999999999999999888   566799999999999999999999999999


Q ss_pred             HhhhcccChHHHHHHhHhhhhhhhhhhhcccccccchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508         84 SDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI  163 (555)
Q Consensus        84 eDl~d~~TI~~C~~iF~~lEsr~~~~~~~~~~~~~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl  163 (555)
                      +||+|++|++.|.+||+|||+|+.+|++..|+.+|||+||||||+|||||||++||||||||+||||++|||+||||+|+
T Consensus       104 eDl~dm~tl~eCkkiF~yvE~~~~~~K~~~f~~~~kn~lLR~cNdLLRRLSrt~ntvFCGRI~lfLsrfFPlsErSG~Nl  183 (674)
T KOG2491|consen  104 EDLLDMSTLDECKKIFTYVEKNVATWKSNTFFAAGKNVLLRMCNDLLRRLSRTQNTVFCGRIQLFLSRFFPLSERSGLNL  183 (674)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhHHHHccchhhhcccchhHHHHHHHHHHHhhcccceehHHHHHHHHHhCCchhccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCccccCCCCCcccccc-----ccccCCCChhhHHhhhhccccccCcccccccccHHHHHHHHHHH
Q psy10508        164 ISEFNVENITEFGGDEEMDVSSNETEETDTE-----EVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETV  238 (555)
Q Consensus       164 rGefN~eNvT~fe~~~~~~~~~~~~e~~e~~-----~~~~~~vD~~lY~~FWsLQ~~FsnP~~l~~k~~w~~F~~~~~~V  238 (555)
                      +|+||++|||.|+.++.+++..+ .++.+++     +.+.++|||+||++|||||+|||||++||++.+|.+|+.+++.|
T Consensus       184 ~g~fN~~nvt~fg~~e~d~~~~~-~e~~et~~~e~~~~~~ikvd~~lY~~FWSLQ~~f~NP~sly~k~kw~~F~~~~~~v  262 (674)
T KOG2491|consen  184 QGQFNLENVTVFGTNEQDSTLGD-VEEGETGDEEAPTTCSIKVDYNLYRKFWSLQDYFSNPNSLYEKIKWKKFLKYLEEV  262 (674)
T ss_pred             hcccccccceecccccccccccc-cCCCCcccccCCCcccccccHHHHHHHHHHHHHhcCcHHHhcchHHHHHHHHHHHH
Confidence            99999999999999986654432 2222333     33558999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccccCC---------CC------CCCCCcccccCchhhHHhhhcChhHHHHHHHHHHHHHHHhhhhcccCC
Q psy10508        239 LAAFKSYKLDDVQSS---------LN------PSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRG  303 (555)
Q Consensus       239 L~~F~s~kl~~~~~~---------~~------~~~~ff~KYLTS~kLf~LQL~D~~FRR~iLvQ~LIlfqyL~s~~K~k~  303 (555)
                      |.+|+++++++..+.         +.      .+.+||+|||||++||.|||+|++||||||+|+||+||||+..+|+|.
T Consensus       263 Lq~F~S~kle~~~~~sn~~~ee~at~~~s~~~i~k~ff~Kflts~kLlalQLsDssFRr~~LlQ~lIiFqYL~~~~Kfk~  342 (674)
T KOG2491|consen  263 LQVFKSYKLEDTFGESNEKMEELATGGESVKYIDKGFFAKFLTSPKLLALQLSDSSFRRHILLQYLIIFQYLKAQSKFKS  342 (674)
T ss_pred             HHHHhhhhhhhhhcccccccchhhhcCcchhhhhcchhHHHhccHHHhhhhcCchHHHHHHHHHHHHHHHHHhhhccccc
Confidence            999999999887432         12      246699999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhchhhhHhhhhcCCCCCCCCCCCCCccccCCCCCCCCC
Q psy10508        304 EGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKK  383 (555)
Q Consensus       304 ~~~~L~ee~~~wi~~~~~~V~klL~~t~p~G~~F~~~V~~IL~REknWv~WK~egCp~fekp~~~~~~~~~~~~~~~KR~  383 (555)
                      +.++|+++|+.||+++.++||++|..|||+|+.|.++|+|||.||+||+.||++|||+|+++|...   .++....+||.
T Consensus       343 ~~~vLsdeqa~~l~e~e~~vYklL~~Tpp~G~~f~r~v~hIl~rE~nWn~WKn~GCp~feK~p~~D---k~p~~~~kkr~  419 (674)
T KOG2491|consen  343 SKYVLSDEQALWLKECEKRVYKLLEETPPDGKRFSRTVEHILNREENWNSWKNEGCPSFEKEPTSD---KKPTRIIKKRR  419 (674)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCccc---cccchhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999987764   33333223332


Q ss_pred             -----------C--ChhhhhhhC-CCChhhhhhhhhccCCCCHHHHhHHHHhcCCCCCCcHHHHhhhcCCccchhHHHhh
Q psy10508        384 -----------K--TPELTKLWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLL  449 (555)
Q Consensus       384 -----------~--~~eLs~Lwn-~~dnl~alk~~~R~~~Psle~f~~~~ie~~DPe~~iEeeyk~~n~~~f~WRaLRll  449 (555)
                                 .  |++|+|||+ +||||+|||+++|+++|+|++|+++++++|||+++||++||+.|++.|+|||||++
T Consensus       420 ~~l~~~p~~r~~lGN~eLtrLW~~apdNl~acKseqR~~iP~le~fl~~~~ek~Dpe~~vedeyh~~n~s~~~WRAlRll  499 (674)
T KOG2491|consen  420 AFLGKGPTKRFLLGNEELTRLWNLAPDNLEACKSEQRERIPTLEDFLEEPAEKMDPENMVEDEYHAQNNSAYGWRALRLL  499 (674)
T ss_pred             ccccCCcccceecCCHHHHHHHHhCCccHHHHhHHHhhcCCCHHHHhhchHhhcCHHHhhHHHHHHhhhhhHHHHHHHHH
Confidence                       1  999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCcccCCCCcccchhHHHHHHHHHhhcCCC
Q psy10508        450 SRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPS  484 (555)
Q Consensus       450 ar~~l~~F~~~~~~~~~~~~~LE~~v~~l~~e~~~  484 (555)
                      ||++||+|+++++|+.++.+|||.|+.++++++|-
T Consensus       500 arqsp~~Fs~t~~~~~~i~~~lE~~~~kl~~~~pP  534 (674)
T KOG2491|consen  500 ARQSPHFFSPTNQPFKSICEYLENMVIKLAKELPP  534 (674)
T ss_pred             HhhCcccCCccCCchhhHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999943

>PF11957 efThoc1: THO complex subunit 1 transcription elongation factor; InterPro: IPR021861 The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences

Probab=100.00  E-value=6.7e-113  Score=927.00  Aligned_cols=425  Identities=47%  Similarity=0.837  Sum_probs=376.5

Q ss_pred             HHHHHHHHHHHhhhccc--ccccchHHHHHhhhcccChHHHHHHhHhhhhhhhhhhhcccccccchh-HHHHHHHHHHhh
Q psy10508         57 VIENYISLCVELCMKDM--CNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNN-LLRMCNDLLRRL  133 (555)
Q Consensus        57 ~l~~ll~l~~~~~~~~~--c~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~~~~~~~~~~~~~k~~-lLR~CN~LLRRL  133 (555)
                      +|+++||+++++++.+.  |++++||+|+||+||++||++|+.+|+|||+|+++|+.+.++.+||+. ||||||+|||||
T Consensus         2 ~l~~lLD~~~~~~~~~~~~~~~~~~f~L~edl~d~~ti~~c~~~F~y~Esr~~~~~~~~~~~~~k~~~lLR~cN~LLrRL   81 (491)
T PF11957_consen    2 KLWNLLDLVLILSENEISPCDWALPFFLLEDLLDSLTIPDCEKVFWYVESRRERFKAGNFFQRGKNLVLLRMCNELLRRL   81 (491)
T ss_pred             cHHHHHHHHHHHHHhcccccccccHHHHHHHHHhhCcHHHHHHHHHHHhccHHHHhcccccccCcccccHHHHHHHHHHH
Confidence            57899999999999999  999999999999999999999999999999999999999999999986 999999999999


Q ss_pred             hccCCcchhhHHHHHHhhhcCCCCCcccccccccccccccccCCCCccccCCCCCccccccccccCCCChhhHHhhhhcc
Q psy10508        134 SRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQ  213 (555)
Q Consensus       134 Srs~dtvFCGRIliFLs~~FPLsErSgvNlrGefN~eNvT~fe~~~~~~~~~~~~e~~e~~~~~~~~vD~~lY~~FWsLQ  213 (555)
                      ||++||||||||++|||++|||+||||||++|+||++|+|.|+.....        ..+.+++....+||+||++||+||
T Consensus        82 Srt~~~~fcGRi~~FLs~~fPl~ErSg~Nl~g~fn~~n~T~~~~~~~~--------~~~~~~~~~~~~D~~~Y~~FW~LQ  153 (491)
T PF11957_consen   82 SRTQDTVFCGRILIFLSQLFPLSERSGVNLRGEFNVENVTTFEEQEEG--------EDEDADSDKMQIDYNLYPKFWSLQ  153 (491)
T ss_pred             HhcccHHHHHHHHHHHHHHCCCcccccCcccccccccccccccccccc--------cCccCccccccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999921110        011223356789999999999999


Q ss_pred             ccccCcccccccccHHHHHHHHHHHHHHHhcccccc--------------ccCC----------CCCCC-CCcccccCch
Q psy10508        214 DYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD--------------VQSS----------LNPSG-DYFAKYLTNQ  268 (555)
Q Consensus       214 ~~FsnP~~l~~k~~w~~F~~~~~~VL~~F~s~kl~~--------------~~~~----------~~~~~-~ff~KYLTS~  268 (555)
                      +||+||+.||++.+|.+|.++++.||++|.+++++.              .+.+          ++... +||||||||+
T Consensus       154 ~~f~nP~~~~~~~~~~~f~~~l~~vl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~kyLTs~  233 (491)
T PF11957_consen  154 EFFSNPPQLFEPDNWKTFKSYLNAVLDAFEEIKLEFYRRIKSSSKKIADDNRALNKRKRSPSDSEEISSSHFFPKYLTSR  233 (491)
T ss_pred             HHhcChHHHhChhHHHHHHHHHHHHHHHHHhcchhhhhhccccccccchhhhhhcccccccchhhhhhhhhccccccCCH
Confidence            999999999999999999999999999999988751              1111          01122 3999999999


Q ss_pred             hhHHhhhcChhHHHHHHHHHHHHHHHhhhhcccCCCC------------CCCChhhHHHHHHHHHHHHHHHhhCCCCchh
Q psy10508        269 KLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEG------------LELKSDQEKWVKDTTETVYSLIKQTPPDGEH  336 (555)
Q Consensus       269 kLf~LQL~D~~FRR~iLvQ~LIlfqyL~s~~K~k~~~------------~~L~ee~~~wi~~~~~~V~klL~~t~p~G~~  336 (555)
                      +||+|||+|++||||||||+||+||||++.++++...            ++|+++|++||++++.+|+++|++|||+|+.
T Consensus       234 ~Ll~LqL~D~~FRR~iLvQ~lIl~~~L~sl~~~~~~~~~~~~nk~~~~~~~l~~~~~~wi~~~~~~v~~~L~~~~p~G~~  313 (491)
T PF11957_consen  234 KLLDLQLSDPSFRRQILVQILILFQYLLSLTKFKKEKLFYKKNKSVIYSFVLSEEDKKWIKETKKRVYKLLKETPPDGPQ  313 (491)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            9999999999999999999999999999988765433            8999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhhhHhhhhcCCCCCCCCCCCCCccccCCCCCCCC-----CC-----ChhhhhhhC-CCCh-hhhhhhh
Q psy10508        337 FSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKK-----KK-----TPELTKLWN-SKDN-LEACKSA  404 (555)
Q Consensus       337 F~~~V~~IL~REknWv~WK~egCp~fekp~~~~~~~~~~~~~~~KR-----~~-----~~eLs~Lwn-~~dn-l~alk~~  404 (555)
                      |+++|+|||+||+||++||++|||+|++| .++.....+....+||     ++     |++|++||| ++++ |++|+.+
T Consensus       314 F~~~v~~iL~rE~nW~~WK~~gCp~fe~~-~~~~~~~~~~~~~~K~~~~~~~~~~~mGn~~Ls~LW~~~~~~gL~~lk~~  392 (491)
T PF11957_consen  314 FARMVEHILEREKNWVRWKNEGCPPFEKP-VSPESVPEAKESFKKRGFPKRPRKIKMGNPELSRLWNLKPDNGLEALKDP  392 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcccc-cCccccccccchhhhhccccccccCCCCChhHHHHhCCCCcchHHHHhcc
Confidence            99999999999999999999999999999 4443222222222222     22     999999999 8888 9999999


Q ss_pred             hccCCCCHHHHhHHHHh---cCCCCCCcHHHHhhhcCCccchhHHHhhhhcCCCCcccCCCCcccchhHHHHHHHHHhhc
Q psy10508        405 ERDFTPSLESYFEEAIQ---QMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKE  481 (555)
Q Consensus       405 ~R~~~Psle~f~~~~ie---~~DPe~~iEeeyk~~n~~~f~WRaLRllar~~l~~F~~~~~~~~~~~~~LE~~v~~l~~e  481 (555)
                      .|+++|++++|++++++   ++||++++|++|+.+++++|+|||||++|+++||+|..++++ +.|++|++.|+++.+++
T Consensus       393 ~r~~~p~le~f~~~~~~~~~~~d~~~~~e~e~~~~~~~~~~WraLRll~~~~l~~F~k~~~~-~~l~~l~~~~~~~~~~e  471 (491)
T PF11957_consen  393 ERYFLPSLESFFEEIIEDKFEMDPENQIEKEYKPENKAVKQWRALRLLRRQSLHFFDKINEP-TGLKGLFEEMLKKEAKE  471 (491)
T ss_pred             cccCCCCHHHHHHHHHHhHHhcCcccChhHHHHHhcchhhHHHHHHHHhhCCHHhcCCcccc-cCHHHHHhhhhhccccc
Confidence            99999999999999999   999999999999999999999999999999999999999988 99999999999988888


Q ss_pred             CCCCccCCCC
Q psy10508        482 KPSSQISGNG  491 (555)
Q Consensus       482 ~~~~~~~~~~  491 (555)
                      .+.+......
T Consensus       472 ~~~~~~~~~~  481 (491)
T PF11957_consen  472 EPDEEEEEKN  481 (491)
T ss_pred             cccchhhhhh
Confidence            7555444333

The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	555
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 4e-11
 Identities = 88/552 (15%), Positives = 151/552 (27%), Gaps = 167/552 (30%)

Query: 2   LDSFQLNFDKSQLNVVSD--KYALYKPTCD--YDKKSALEQSIRQYLLKLIKTPDIDIKV 57
            D+F  NFD      V D  K  L K   D     K A+  +     L            
Sbjct: 26  EDAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGT---LRL---------FWT 70

Query: 58  IENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMS 117
           + +     V+  ++++         L                 Y+E    ++     F  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA- 127

Query: 118 CKNNLLR--MCNDL---LRRLSRSQNTVF-----CGRILLFL--AKFFPFSERSGLNIIS 165
            K N+ R      L   L  L  ++N +       G+  + L     +    +    I  
Sbjct: 128 -KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-- 184

Query: 166 EF--NVENITEFGGDEEM------DVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFR 217
            F  N++N        EM       +  N T  +D     K++I         S+Q   R
Sbjct: 185 -FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--------SIQAELR 235

Query: 218 NPVQCYNKVSWKMFTSYAETVLAAFKSYK-----LDDVQSS--LNPSGDYFA---KYL-- 265
                                L   K Y+     L +VQ++       + F    K L  
Sbjct: 236 R--------------------LLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLT 271

Query: 266 TNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYS 325
           T  K +   LS        L    +          +  E   L     K++    + +  
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLL---KYLDCRPQDLPR 320

Query: 326 LIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRP----LTSITDEDKKD----- 376
            +  T P     S + + I  G   W+ WK+  C +L       L  +   + +      
Sbjct: 321 EVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 377 ---EPDAKKKKTPE--LTKLWNSKDN------LEAC--KS-AERDFTPSLES----YFEE 418
               P A     P   L+ +W           +      S  E+    S  S    Y E 
Sbjct: 379 SVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 419 AIQQMDPAA---AVEEQYK-----------KVNDSNYAWRALRLLSRKCPHFF------L 458
            ++  +  A   ++ + Y                  Y              F+      L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--------------FYSHIGHHL 481

Query: 459 NATPNVEKNSEF 470
               + E+ + F
Sbjct: 482 KNIEHPERMTLF 493

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 65/464 (14%), Positives = 140/464 (30%), Gaps = 116/464 (25%)

Query: 1   MLDSFQLNFDKSQLNVVSDKYALYKPTCD-YDKKSALEQSIRQY---LLKL--IKTPDI- 53
           ML       D +  +       +         +   L +S + Y   LL L  ++     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAW 259

Query: 54  ---DIK----VIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFY-YVEVN 105
              ++     +   +  +   L      +  + +   S T    T D+ + L   Y++  
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTL---TPDEVKSLLLKYLDCR 314

Query: 106 VNIWKQQTFFMSCKNN--LLRMCNDLLR-RLSRSQN--TVFCGR----ILLFLAKFFPFS 156
                ++        N   L +  + +R  L+   N   V C +    I   L    P  
Sbjct: 315 PQDLPREV----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 157 ERS---GLNIISEFNVENITEFGGDEEM-----DVSSNETEETDTEEVDKVKIDFNFYKK 208
            R     L++    +  +I        +     DV  ++      +      ++    + 
Sbjct: 371 YRKMFDRLSVFPP-SA-HIPT----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 209 FWSLQD-YFRNPVQCYNKVSW--KMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYL 265
             S+   Y    V+  N+ +    +   Y        K++  DD+         YF  ++
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIP-----KTFDSDDL--IPPYLDQYFYSHI 477

Query: 266 T-NQKLLDLQLSDTNFRR-YVLLQFL---ILFQYFTSTVKSRGEGLELKSDQEKWVKDTT 320
             + K ++     T FR  ++  +FL   I  ++ ++   + G  L      +       
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKF------ 529

Query: 321 ETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDA 380
              Y           +                    +  P+ +R + +I D   K E + 
Sbjct: 530 ---YK---------PYIC------------------DNDPKYERLVNAILDFLPKIEENL 559

Query: 381 KKKKTPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMD 424
              K  +L ++    ++               E+ FEEA +Q+ 
Sbjct: 560 ICSKYTDLLRIALMAED---------------EAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00