Psyllid ID: psy10512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UG63 | 623 | ATP-binding cassette sub- | yes | N/A | 0.974 | 0.983 | 0.682 | 0.0 | |
| Q99LE6 | 628 | ATP-binding cassette sub- | yes | N/A | 0.952 | 0.953 | 0.670 | 0.0 | |
| Q2KJA2 | 625 | ATP-binding cassette sub- | yes | N/A | 0.898 | 0.904 | 0.701 | 0.0 | |
| Q9FJH6 | 595 | ABC transporter F family | yes | N/A | 0.861 | 0.910 | 0.644 | 0.0 | |
| Q8T6B7 | 593 | ABC transporter F family | yes | N/A | 0.882 | 0.935 | 0.545 | 1e-179 | |
| P40024 | 610 | ABC transporter ATP-bindi | yes | N/A | 0.858 | 0.885 | 0.517 | 1e-160 | |
| O42943 | 618 | Uncharacterized ABC trans | yes | N/A | 0.957 | 0.974 | 0.468 | 1e-155 | |
| Q9USH9 | 822 | Uncharacterized ABC trans | no | N/A | 0.906 | 0.693 | 0.443 | 1e-131 | |
| Q9M1H3 | 723 | ABC transporter F family | no | N/A | 0.834 | 0.726 | 0.434 | 1e-131 | |
| Q8H0V6 | 715 | ABC transporter F family | no | N/A | 0.826 | 0.727 | 0.431 | 1e-127 |
| >sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/617 (68%), Positives = 503/617 (81%), Gaps = 4/617 (0%)
Query: 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCR 60
MPSD KK+ KKKE AK R P+K + V Q+ + E + + L +
Sbjct: 1 MPSDLAKKKAAKKKEAAKAR--QRPRKGHEENGDVVTEPQVAEKNEANGRETTEVDLLTK 58
Query: 61 KLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLG 120
+LE A ARA TG LA HP S DV I N S+TFHG ELL DT LELN GRRYGL+G
Sbjct: 59 ELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIG 118
Query: 121 LNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
LNG GKS LL+ +G REVP+P+HIDI+HLTREMP SDK+ L CVMEVD ER LEK AE+
Sbjct: 119 LNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAER 178
Query: 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
L A ED E E+LM++Y+RL+++ AD AE RA+ ILHGLGFT MQ+KK KDFSGGWRMR
Sbjct: 179 L-AHEDAEC-EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMR 236
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
+ALARAL+++P +LLLDEPTNHLDLDACVWLEEELKT+KRILV++SHSQDFLNGVCTNII
Sbjct: 237 VALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNII 296
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
H+ +KLKYY GNY+ + KTRLEL ENQMK+++WEQDQIAHMKNYIARFGHGSAKLARQA
Sbjct: 297 HMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQA 356
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL 420
QSKEKTL KM+ GLT++V +DKT++F FP CGKIPPPVIMVQNVSF+Y+ DGP IY NL
Sbjct: 357 QSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNL 416
Query: 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
EFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+SH++ RYHQHL E LDLD
Sbjct: 417 EFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 476
Query: 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+QQV PIR LSDGQKCRV A+LAWQ PH
Sbjct: 477 LSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPH 536
Query: 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+L LDEPTNHLD+ETIDALADAIN+FEGG++LVSHDFRLI QVA+EIW+CE +TKW G
Sbjct: 537 MLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPG 596
Query: 601 NILDYKETLRAKVLKEK 617
+IL YKE L++K++ E+
Sbjct: 597 DILAYKEHLKSKLVDEE 613
|
Homo sapiens (taxid: 9606) |
| >sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/610 (67%), Positives = 494/610 (80%), Gaps = 11/610 (1%)
Query: 8 KQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKLEADAK 67
+Q+ +K + G P+ V E+I +E + L ++LE
Sbjct: 20 RQRPRKGHEENGDAVTEPQ---------VAEEKIEEANGRETTGDGEVDLLTKELEDFEM 70
Query: 68 LNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKS 127
A ARA TG LA HP S DV I N S+TFHG ELL DT LELN GRRYGL+GLNG GKS
Sbjct: 71 KKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKS 130
Query: 128 TLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD 187
LL+ +G REVP+P+HIDI+HLTREMP S+K+ L CVMEVD ER LE+ AE+L A ED
Sbjct: 131 MLLSAIGKREVPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAMLEREAERL-AHEDA 189
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
E E+LM++Y+RL+++ AD AE RA+ ILHGLGFT MQ+KK KDFSGGWRMR+ALARAL
Sbjct: 190 EC-EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARAL 248
Query: 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
+++P +LLLDEPTNHLDLDACVWLEEELKT+KRILV++SHSQDFLNGVCTNIIH+ +KL
Sbjct: 249 FIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKL 308
Query: 308 KYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL 367
KYY GNY+ + KTRLEL ENQMK+++WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL
Sbjct: 309 KYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL 368
Query: 368 AKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD 427
KM+ GLT++V +DKT++F FP CGKIPPPVIMVQNVSF+Y+ DGP IY NLEFGIDLD
Sbjct: 369 QKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLD 428
Query: 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYM 487
TR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+SH++ RYHQHL E LDLD+SPL+YM
Sbjct: 429 TRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYM 488
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
++ +PE+K++EEMRKIIGRYGLTG+QQV PIR LSDGQKCRV A+LAWQ PH+L LDEP
Sbjct: 489 MKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEP 548
Query: 548 TNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
TNHLD+ETIDALADAIN+FEGG++LVSHDFRLI QVA+EIW+CE +TKW G+IL YKE
Sbjct: 549 TNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKE 608
Query: 608 TLRAKVLKEK 617
L++K++ E+
Sbjct: 609 HLKSKLVDEE 618
|
Mus musculus (taxid: 10090) |
| >sp|Q2KJA2|ABCF2_BOVIN ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/567 (70%), Positives = 472/567 (83%), Gaps = 2/567 (0%)
Query: 51 EISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLEL 110
E + + L ++LE A ARA TG LA HP S D I N S+TFHG ELL DT LEL
Sbjct: 51 ETTEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLEL 110
Query: 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
N GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREMP SDK+ L CVMEVD E
Sbjct: 111 NSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTE 170
Query: 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
R LE+ AE+L A ED E ++ L + + AD AE RA+ ILHGLGFT MQ+KK
Sbjct: 171 RAMLEREAERL-AHEDAECEKLLELYERLEE-LDADKAEMRASRILHGLGFTPAMQRKKL 228
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQD 290
KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEEELKT+KRILV++SHSQD
Sbjct: 229 KDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQD 288
Query: 291 FLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFG 350
FLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++WEQDQIAHMKNYIARFG
Sbjct: 289 FLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFG 348
Query: 351 HGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYS 410
HGSAKLARQAQSKEKTL KM+ GLT++V +DKT++F FP CGKIPPPVIMVQNVSF+Y+
Sbjct: 349 HGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYT 408
Query: 411 DDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470
DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+SH++ RYH
Sbjct: 409 KDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYH 468
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
QHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+QQV PIR LSDGQKCRV
Sbjct: 469 QHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVC 528
Query: 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWIC 590
A+LAWQ PH+L LDEPTNHLD+ETIDALADAINDFEGG++LVSHDFRLI QVA+EIW+C
Sbjct: 529 LAWLAWQNPHMLFLDEPTNHLDIETIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVC 588
Query: 591 ENGKVTKWEGNILDYKETLRAKVLKEK 617
E +TKW G+IL YKE L++K++ E+
Sbjct: 589 EKQTITKWPGDILAYKEHLKSKLVGEE 615
|
Bos taurus (taxid: 9913) |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/545 (64%), Positives = 441/545 (80%), Gaps = 3/545 (0%)
Query: 68 LNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKS 127
L R CTG L HP+SRD++I + S+TFHG +L+ D+MLELN GRRYGLLGLNG GKS
Sbjct: 49 LQISDRTCTGVLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKS 108
Query: 128 TLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD 187
TLL +G RE+P+PD +DI+HL+ E+ A+D S+L V+ DEER+RLEK E LV +DD
Sbjct: 109 TLLTAIGRREIPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQ-QDD 167
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
E+L IY+RLD + A+TAE RAA IL GLGF KEMQ KKTKDFSGGWRMRIALARAL
Sbjct: 168 GGGERLQSIYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMRIALARAL 227
Query: 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
++ P +LLLDEPTNHLDL+ACVWLEE LK + RILV++SHSQDFLNGVCTNIIH+ ++L
Sbjct: 228 FIMPTILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQL 287
Query: 308 KYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL 367
KYY GN++ +C+TR EL ENQMKQY WEQ+QI+HMK YIARFGHGSAKLARQAQSKEKTL
Sbjct: 288 KYYTGNFDQYCQTRSELEENQMKQYRWEQEQISHMKEYIARFGHGSAKLARQAQSKEKTL 347
Query: 368 AKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD 427
AKM GLT+KV D + F F GK+PPPV+ VSF Y+ D IY+N++FG+DLD
Sbjct: 348 AKMERGGLTEKVARDSVLVFRFADVGKLPPPVLQFVEVSFGYTPD-YLIYKNIDFGVDLD 406
Query: 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYM 487
+R+ALVGPNGAGKSTLL L+ G+L P+ GMVR+++HL+ A+YHQHL E LDL++ L YM
Sbjct: 407 SRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYM 466
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
++ FP ++ E+MR IGR+GLTG+ QV P++ LSDGQ+ RV+FA+LA++ P++LLLDEP
Sbjct: 467 MREFPGTEE-EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEP 525
Query: 548 TNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
TNHLD+ETID+LA+A+N+++GGLVLVSHDFRLINQVA EIW+CE +TKW G+I+D+K
Sbjct: 526 TNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKR 585
Query: 608 TLRAK 612
L+AK
Sbjct: 586 HLKAK 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8T6B7|ABCF2_DICDI ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/559 (54%), Positives = 407/559 (72%), Gaps = 4/559 (0%)
Query: 72 ARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA 131
A TG+LA SRDVKI ++TFHG ELL DT +E+N GRRYGL+G NG GKST
Sbjct: 37 AFTATGALASKESSRDVKIEQVTLTFHGKELLSDTTVEINFGRRYGLIGQNGCGKSTFFQ 96
Query: 132 VLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191
L RE+P+P+HIDIFHL+ E S+++AL V++ E+ V+ ++ E+ + E E
Sbjct: 97 CLAVRELPIPEHIDIFHLSEEAHPSERTALQSVIDDAEKEVKRLEVLEERLLEEQGPESE 156
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
+L D+Y+RL+++ T RA+ IL GLGFT + KKTKD SGGWRMR++LA+AL++KP
Sbjct: 157 ELFDVYERLENLDPTTFVPRASEILIGLGFTSQTMLKKTKDLSGGWRMRVSLAKALFIKP 216
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
LLLLDEPTNHLDL ACVWLE+ L Y R L+IISHSQDFLN VCTNIIH+ + KLKYYG
Sbjct: 217 TLLLLDEPTNHLDLGACVWLEDYLANYDRSLIIISHSQDFLNAVCTNIIHMTQSKLKYYG 276
Query: 312 GNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMV 371
GNY+ F KT+ EL NQMK Y+ +Q++IAH+K++IA G S L RQ +SK+K + KM
Sbjct: 277 GNYDNFVKTKAELEVNQMKAYHKQQEEIAHIKSFIASCGTYS-NLVRQGKSKQKIIDKME 335
Query: 372 NQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYS-DDGPWIYRNLEFGIDLDTRL 430
GL ++V DK F+FP CG++ PP++ NV+F YS + +YRNL+ IDLD+R+
Sbjct: 336 EAGLVERVQEDKIFNFSFPPCGELAPPIMHFDNVTFSYSGKEADVLYRNLDLAIDLDSRI 395
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
ALVGPNGAGKSTLL L+ G ++P+ G ++K+SHL+ ARYHQH HE+LDL +PLD++
Sbjct: 396 ALVGPNGAGKSTLLKLMVGQISPTQGFIKKHSHLKMARYHQHAHEVLDLTATPLDFVRSK 455
Query: 491 FPEV-KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
F + KD EE R+ IGR+G+TG+ Q I +SDG K R++F +A + PHLLLLDEPTN
Sbjct: 456 FAHMNKDTEEWRREIGRFGVTGKAQTEAIGCMSDGIKSRLIFCLMALENPHLLLLDEPTN 515
Query: 550 HLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609
HLDME ID+LA AIN F GG++LVSHDFRLI+QVA+EIW+C+N +TKW G+I YK L
Sbjct: 516 HLDMECIDSLALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTITKWAGDITSYKNHL 575
Query: 610 RAKVLKEKNKSAAVSNGKK 628
+A+ +++ K A+++ KK
Sbjct: 576 KAQ-MRDLTKQGALASLKK 593
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P40024|ARB1_YEAST ABC transporter ATP-binding protein ARB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/545 (51%), Positives = 380/545 (69%), Gaps = 5/545 (0%)
Query: 73 RACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV 132
R TG L+ SRD+K+++ S+ FHG L+QD+ LELN GRRYGLLG NG GKST L
Sbjct: 67 RVVTGVLSSLETSRDIKLSSVSLLFHGKVLIQDSGLELNYGRRYGLLGENGCGKSTFLKA 126
Query: 133 LGNREVPVPDHIDIFHLTREMPASDKSALT-CVMEVDEERVRLEKLAEQLVACEDDESQE 191
L RE P+P+HIDI+ L S+ SAL V E E R+E L E+ + ED E
Sbjct: 127 LATREYPIPEHIDIYLLDEPAEPSELSALDYVVTEAQHELKRIEDLVEKTI-LEDGPESE 185
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
L +Y+R+D + DT E+RAA IL GLGF K+ KKTKD SGGW+MR+ALA+AL+VKP
Sbjct: 186 LLEPLYERMDSLDPDTFESRAAIILIGLGFNKKTILKKTKDMSGGWKMRVALAKALFVKP 245
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
LLLLD+PT HLDL+ACVWLEE LK + R LV++SHSQDFLNGVCTN+I + +KL YG
Sbjct: 246 TLLLLDDPTAHLDLEACVWLEEYLKRFDRTLVLVSHSQDFLNGVCTNMIDMRAQKLTAYG 305
Query: 312 GNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMV 371
GNY+++ KTR EL NQMKQYN +Q++I H+K +IA G A L +QA+S++K L KM
Sbjct: 306 GNYDSYHKTRSELETNQMKQYNKQQEEIQHIKKFIASAG-TYANLVKQAKSRQKILDKME 364
Query: 372 NQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRL 430
GL V DK +F FP ++PPPV+ ++SF Y S+ +Y +L FG+D+D+R+
Sbjct: 365 ADGLVQPVVPDKVFSFRFPQVERLPPPVLAFDDISFHYESNPSENLYEHLNFGVDMDSRI 424
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
ALVGPNG GKSTLL ++ G+LTP G V +++H++ Y QH + LDL S L+++
Sbjct: 425 ALVGPNGVGKSTLLKIMTGELTPQSGRVSRHTHVKLGVYSQHSQDQLDLTKSALEFVRDK 484
Query: 491 FPEV-KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+ + +D + R +GRYGLTG Q + LS+GQ+ RVVFA LA + P++LLLDEPTN
Sbjct: 485 YSNISQDFQFWRGQLGRYGLTGEGQTVQMATLSEGQRSRVVFALLALEQPNVLLLDEPTN 544
Query: 550 HLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609
LD+ TID+LADAIN+F GG+V+VSHDFRL++++A++I++ EN T+W+G+IL YK L
Sbjct: 545 GLDIPTIDSLADAINEFNGGVVVVSHDFRLLDKIAQDIFVVENKTATRWDGSILQYKNKL 604
Query: 610 RAKVL 614
V+
Sbjct: 605 AKNVV 609
|
Stimulates 40S and 60S ribosome biogenesis. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O42943|YBP8_SCHPO Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16H5.08c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/629 (46%), Positives = 416/629 (66%), Gaps = 27/629 (4%)
Query: 3 SDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKL 62
S +K K++ KK E+ +G + KP+ ++ +GV ++ E+S + +
Sbjct: 5 SASKLKREAKKAERLAAKGESV--KPSKKNGTKNGKDKEVDGVTKDLSELSTSDPIFE-- 60
Query: 63 EADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLN 122
R+ +G L P SRD+KI +++++FHG L+++ +ELN G+RYGLLG N
Sbjct: 61 ----------RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDN 110
Query: 123 GSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV-RLEKLAEQL 181
GSGKST L + R+V P+HID + L E SD +A+ +++ +++V +LE E+L
Sbjct: 111 GSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEEL 170
Query: 182 VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241
+ DD L Y+ LDD+ T EA+AA ILHGLGFT+EM K TKD SGGWRMR+
Sbjct: 171 -STADDVDDVLLESKYEELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTKDMSGGWRMRV 229
Query: 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIH 301
AL+RAL++KP LLLLDEPTNHLDL+A VWLE L Y +ILV+ SHSQDFLN VCTNII
Sbjct: 230 ALSRALFIKPSLLLLDEPTNHLDLEAVVWLENYLAKYDKILVVTSHSQDFLNNVCTNIID 289
Query: 302 L-DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
L K++L YYGGN++ + +T+ E NQMK Y +Q++IAH+K +IA G A L RQA
Sbjct: 290 LTSKKQLVYYGGNFDIYMRTKEENETNQMKAYLKQQEEIAHIKKFIASAG-TYANLVRQA 348
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPW---IY 417
+SK+K + KM GL +K + +F F K+PPP+I +V+F Y DG +Y
Sbjct: 349 KSKQKIIDKMEAAGLVEKPEPPRQFSFEFDEVRKLPPPIIAFNDVAFSY--DGNLDHALY 406
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
R+L FGID+D+R+A+VG NG GKSTLLNLI G L P G V + S L+ A+Y QH + L
Sbjct: 407 RDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKYSQHSADQL 466
Query: 478 DLDISPLDYMLQSF-PEVKDRE--EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534
D SPL+Y++ ++ P+ +RE + R ++G++GL+G Q IR LSDG K RVVFA L
Sbjct: 467 PYDKSPLEYIMDTYKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAAL 526
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
A + PH+LLLDEPTNHLD+ +IDALA AIN + GG+VLVSHDFRLI QV++E+W ++ K
Sbjct: 527 ALEQPHILLLDEPTNHLDITSIDALAKAINVWTGGVVLVSHDFRLIGQVSKELWEVKDKK 586
Query: 595 VTKWEGNILDYKETLRAKVLKEKNKSAAV 623
V K + +I +YK+++ AK ++ ++ +A V
Sbjct: 587 VVKLDCSIEEYKKSM-AKEVQSRDTTAKV 614
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9USH9|YJQ1_SCHPO Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.01 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/580 (44%), Positives = 368/580 (63%), Gaps = 10/580 (1%)
Query: 57 ALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRY 116
A +K+ D A+ TG+L P SRD+++ S++ G L++D+ L L GRRY
Sbjct: 245 ASGQKVAPDGSNPADGITVTGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRY 304
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE-ERVRLE 175
GL+ NGSGKSTLL + +P P +D + L RE ++ + + V++++E ER LE
Sbjct: 305 GLIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLE 364
Query: 176 KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235
+ E L+ + D++ +L I RL D+ + ++ R IL GL FT EM K+T + SG
Sbjct: 365 AMMEDLLD-DPDKNAVELDTIQTRLTDLETENSDHRVYKILRGLQFTDEMIAKRTNELSG 423
Query: 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--KTYKRILVIISHSQDFLN 293
GWRMRIALAR L++KP L++LDEPTNHLDL+A WLEE L + L+I H+QD LN
Sbjct: 424 GWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLN 483
Query: 294 GVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFG-HG 352
VCT+IIHL +KL YY GNY+ F K R E K+ ++ +A ++N + G
Sbjct: 484 EVCTDIIHLYHQKLDYYSGNYDTFLKVRAERDVQLAKKARQQEKDMAKLQNKLNMTGSEQ 543
Query: 353 SAKLARQAQSKEKTLAKMVNQG--LTDKVTTDKTVTFTFPSC-GKIPPPVIMVQNVSFRY 409
K + ++ K L K G L +++ +K + F C G IP P I Q+VSF Y
Sbjct: 544 QKKAKAKVKAMNKKLEKDKQSGKVLDEEIIQEKQLVIRFEDCGGGIPSPAIKFQDVSFNY 603
Query: 410 SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARY 469
GP I+ L FG+DL +R+ALVGPNGAGK+TL+ LI + PS G V ++ LR A +
Sbjct: 604 P-GGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLRLALF 662
Query: 470 HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
+QH+ + LD+ +S ++++ F K EMR+I+GRYGLTG+ QV P+ QLSDGQ+ RV
Sbjct: 663 NQHMGDQLDMRLSAVEWLRTKFGN-KPEGEMRRIVGRYGLTGKSQVIPMGQLSDGQRRRV 721
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWI 589
+FA+L PH+LLLDEPTN LD++TIDALADA+N+F+GG+V ++HDFRLI+QVAEEIWI
Sbjct: 722 LFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAEEIWI 781
Query: 590 CENGKVTKWEGNILDYKETLRAKVLKEKNKSAAVSNGKKK 629
+NG V +++G I DYK L+ ++ KE+ + + K+K
Sbjct: 782 VQNGTVKEFDGEIRDYKMMLKQQIAKEREEERRIELEKQK 821
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/566 (43%), Positives = 359/566 (63%), Gaps = 41/566 (7%)
Query: 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+D+ I +FS++ G ELL++ + ++ G+RYGL+G NG GKSTLL +L R++PVP +ID
Sbjct: 161 KDITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNID 220
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE------------QL 193
+ + +E+ +KSAL V+ +EE V+L + AE L E +L
Sbjct: 221 VLLVEQEVVGDEKSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKL 280
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
++YDRL + +D AEA+A+ IL GLGFTK+MQ + T+ FSGGWRMRI+LARAL+V+P L
Sbjct: 281 AELYDRLQILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTL 340
Query: 254 LLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
LLLDEPTNHLDL A +WLEE L +K+ LV++SH +DFLN VCT IIHL + L +Y GN
Sbjct: 341 LLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQNLHFYRGN 400
Query: 314 YEAF----------CKTRLELLENQMKQYN-----WEQDQIAHMKNYIARFGHGSAKLAR 358
++ F + ++ + QMK +Q+++ + A AK A
Sbjct: 401 FDGFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTA------AKEAS 454
Query: 359 QAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYR 418
+++SK KT+ + + D +V F FP ++ PP++ + VSF Y + +
Sbjct: 455 KSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTELTPPLLQLIEVSFSYPNRPDFRLS 514
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
N++ GID+ TR+A+VGPNGAGKSTLLNL+ GDL P+ G +R++ LR RY QH +LL
Sbjct: 515 NVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLT 574
Query: 479 LDISPLDYMLQSFPE---VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
+ +P+ Y+L+ P+ +E +R +G++GL + PI +LS GQK RVVF ++
Sbjct: 575 MGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSIS 634
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQV-AEE----IWIC 590
PH+LLLDEPTNHLDM++IDALADA+++F GG+VLVSHD RLI++V AEE IW+
Sbjct: 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVV 694
Query: 591 ENGKVTKWEGNILDYKETLRAKVLKE 616
E+G V + G +YKE L+ ++ E
Sbjct: 695 EDGTVNFFPGTFEEYKEDLQREIKAE 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/547 (43%), Positives = 346/547 (63%), Gaps = 27/547 (4%)
Query: 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VPDHI 144
RD+ + NF+++ G +L+ D + L+ GR YGL+G NG+GK+T L + + +P +
Sbjct: 173 RDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNC 232
Query: 145 DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA-------------------CE 185
I H+ +E+ +AL CV+ D ER +L + Q++A E
Sbjct: 233 QILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPTKDTVE 292
Query: 186 DDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245
D ++L +IY RLD I A TAEARAA+IL GL FT EMQ K T FSGGWRMRIALAR
Sbjct: 293 GDLMSQRLEEIYKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALAR 352
Query: 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKR 305
AL+++P LLLLDEPTNHLDL A +WLE L + + +++SH+++FLN V T+IIHL +
Sbjct: 353 ALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQNQ 412
Query: 306 KLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEK 365
KL Y GNY+ F +TR E ++NQ K + + +HM+ +I +F + +AK A QS+ K
Sbjct: 413 KLSTYKGNYDIFERTREEQVKNQQKAFESSERSRSHMQAFIDKFRY-NAKRASLVQSRIK 471
Query: 366 TLAKMVNQGLTDKVTTDKTVTFTFPSCGKIP-PPVIMVQNVSFRYSDDGPWIYRNLEFGI 424
L ++ + D+V D F FP+ P PP+I + SF Y GP ++RNL FGI
Sbjct: 472 ALDRLAH---VDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYP-GGPLLFRNLNFGI 527
Query: 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPL 484
DLD+R+A+VGPNG GKST+L LI GDL PS G V +++ +R A + QH + LDL +PL
Sbjct: 528 DLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPL 587
Query: 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
YM++ +P V + +++R +G G+TG + P+ LS GQK RV FA + ++ PHLLLL
Sbjct: 588 LYMMRCYPGVPE-QKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLL 646
Query: 545 DEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
DEP+NHLD++ ++AL + F+GG+ +VSHD LI+ +E+W+ +G++ + G D
Sbjct: 647 DEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHD 706
Query: 605 YKETLRA 611
YK+ L++
Sbjct: 707 YKKLLQS 713
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | ||||||
| 91081945 | 619 | PREDICTED: similar to ATP-binding casset | 0.977 | 0.993 | 0.838 | 0.0 | |
| 332376525 | 622 | unknown [Dendroctonus ponderosae] | 0.984 | 0.995 | 0.827 | 0.0 | |
| 156537269 | 637 | PREDICTED: ATP-binding cassette sub-fami | 0.906 | 0.894 | 0.861 | 0.0 | |
| 242020704 | 632 | ATP-dependent transporter, putative [Ped | 0.965 | 0.960 | 0.807 | 0.0 | |
| 193657341 | 616 | PREDICTED: ATP-binding cassette sub-fami | 0.974 | 0.995 | 0.819 | 0.0 | |
| 383851195 | 634 | PREDICTED: ATP-binding cassette sub-fami | 0.941 | 0.933 | 0.816 | 0.0 | |
| 357627330 | 622 | ATP-binding cassette sub-family F member | 0.988 | 1.0 | 0.810 | 0.0 | |
| 114053001 | 622 | ATP-binding cassette sub-family F member | 0.982 | 0.993 | 0.824 | 0.0 | |
| 340729637 | 633 | PREDICTED: ATP-binding cassette sub-fami | 0.917 | 0.911 | 0.848 | 0.0 | |
| 380017217 | 631 | PREDICTED: ATP-binding cassette sub-fami | 0.917 | 0.914 | 0.844 | 0.0 |
| >gi|91081945|ref|XP_966990.1| PREDICTED: similar to ATP-binding cassette sub-family F member 2 [Tribolium castaneum] gi|270007325|gb|EFA03773.1| hypothetical protein TcasGA2_TC013884 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/621 (83%), Positives = 565/621 (90%), Gaps = 6/621 (0%)
Query: 1 MPSDAKKKQQQKKKEQAKGR--GAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEAL 58
MPSDAKK++QQ+KK AK R G AP K A + NG E+S EEAL
Sbjct: 1 MPSDAKKREQQRKKGAAKARQAGKKAPNKNEEQAASQNGDSISQNG----SVELSAEEAL 56
Query: 59 CRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGL 118
C KLEADA+LNAEARACTGSLAVHPKSRD+KI NFSITFHGCE+LQD MLELNCGRRYGL
Sbjct: 57 CAKLEADARLNAEARACTGSLAVHPKSRDIKIDNFSITFHGCEMLQDAMLELNCGRRYGL 116
Query: 119 LGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178
LGLNGSGKST+LAVLGNREVP+P+HIDIFHLTREMPASDKSAL CVMEVDEERVRLEKLA
Sbjct: 117 LGLNGSGKSTILAVLGNREVPIPEHIDIFHLTREMPASDKSALQCVMEVDEERVRLEKLA 176
Query: 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238
E+LVACEDDESQEQLMDIY+RLD+ISADTAEARAANILHGLGFTKEMQ KKTKDFSGGWR
Sbjct: 177 EELVACEDDESQEQLMDIYERLDEISADTAEARAANILHGLGFTKEMQSKKTKDFSGGWR 236
Query: 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTN 298
MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK YKRILV+ISHSQDFLNGVCTN
Sbjct: 237 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKHYKRILVLISHSQDFLNGVCTN 296
Query: 299 IIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLAR 358
IIH++K++LKYY GNY+AF +TR+ELLENQMKQYNWEQDQI HMKNYIARFGHGSAKLAR
Sbjct: 297 IIHVNKKRLKYYTGNYDAFVRTRMELLENQMKQYNWEQDQINHMKNYIARFGHGSAKLAR 356
Query: 359 QAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYR 418
QAQSKEKTLAKMV GLT+KV +DK VTF FPSCGKIPPPVIMVQNVSFRYSDDGPWIYR
Sbjct: 357 QAQSKEKTLAKMVAAGLTEKVVSDKIVTFYFPSCGKIPPPVIMVQNVSFRYSDDGPWIYR 416
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
NLEFGIDLDTRLALVGPNGAGKSTLL L+YGDL P+ GM+RKNSHLR ARYHQHLHELLD
Sbjct: 417 NLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTEGMIRKNSHLRIARYHQHLHELLD 476
Query: 479 LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538
LD+SPL+YM++SFPEVK++EEMRKIIGRYGLTGRQQVCPIRQLSDGQ+CRVVFA+LAWQA
Sbjct: 477 LDLSPLEYMMKSFPEVKEKEEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVFAWLAWQA 536
Query: 539 PHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598
PHLLL DEPTNHLDMETIDALA+AINDFEGG+VLVSHDFRLI+QVA EIW+CE TKW
Sbjct: 537 PHLLLFDEPTNHLDMETIDALAEAINDFEGGMVLVSHDFRLISQVANEIWVCEKETCTKW 596
Query: 599 EGNILDYKETLRAKVLKEKNK 619
G IL+YKE L++K+LKE +K
Sbjct: 597 NGTILEYKEHLKSKILKENDK 617
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332376525|gb|AEE63402.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/621 (82%), Positives = 572/621 (92%), Gaps = 2/621 (0%)
Query: 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCR 60
MPSDAKK++QQ+KK+ AK R + K+P ++ P TNG + ++S EEALC
Sbjct: 1 MPSDAKKREQQRKKDAAKAR-QSGKKQPKVEEQSNPTP-VTTNGTENGTVQLSEEEALCA 58
Query: 61 KLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLG 120
KLEADAKLNAEARACTGSLAVHPKSRDVKI NFSITFHG E+LQD MLELNCGRRYGL+G
Sbjct: 59 KLEADAKLNAEARACTGSLAVHPKSRDVKIENFSITFHGSEMLQDAMLELNCGRRYGLIG 118
Query: 121 LNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
LNG GKSTLLAVLGNREVP+P+HIDIFHLTREMPASDKSAL CVMEVDEER RLE+LAE
Sbjct: 119 LNGCGKSTLLAVLGNREVPIPEHIDIFHLTREMPASDKSALKCVMEVDEERTRLERLAET 178
Query: 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
L+ACEDD+SQEQL+DIY+RLD+ISADTAEARAANILHGLGFTKEMQQKKT+DFSGGWRMR
Sbjct: 179 LIACEDDDSQEQLLDIYERLDEISADTAEARAANILHGLGFTKEMQQKKTRDFSGGWRMR 238
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK YKRILV+ISHSQDFLNGVCTNII
Sbjct: 239 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKNYKRILVLISHSQDFLNGVCTNII 298
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
H+DK++LKYY GNY+AF KTR+ELLENQMKQYNWEQDQI+HMKNYIARFGHGSAKLARQA
Sbjct: 299 HMDKKRLKYYTGNYDAFMKTRMELLENQMKQYNWEQDQISHMKNYIARFGHGSAKLARQA 358
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL 420
QSKEKTLAKMV+QGLT+KV++DK+VTF FPSCG IPPPVIMVQNVSF+YSD+ P IY+NL
Sbjct: 359 QSKEKTLAKMVSQGLTEKVSSDKSVTFYFPSCGTIPPPVIMVQNVSFKYSDNSPHIYKNL 418
Query: 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
EFGIDLDTRLALVGPNGAGKSTLL L+YGDL P+ GM+RKNSHLR ARYHQHLHELLDLD
Sbjct: 419 EFGIDLDTRLALVGPNGAGKSTLLKLLYGDLFPTEGMIRKNSHLRIARYHQHLHELLDLD 478
Query: 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+SPL+YM+ SFP+VK++EEMRKIIGRYGLTGRQQVCPIRQLSDGQ+CRVVFA+LAWQAPH
Sbjct: 479 LSPLEYMMSSFPDVKEKEEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVFAWLAWQAPH 538
Query: 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LLLLDEPTNHLDMETIDALA+A+N FEGGLVLVSHDFRLI+QVAEEIW+CE G VTKW+G
Sbjct: 539 LLLLDEPTNHLDMETIDALAEAVNCFEGGLVLVSHDFRLISQVAEEIWVCEKGTVTKWKG 598
Query: 601 NILDYKETLRAKVLKEKNKSA 621
+IL YKE L++K+LKE K+A
Sbjct: 599 DILSYKEHLKSKMLKESEKNA 619
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156537269|ref|XP_001605787.1| PREDICTED: ATP-binding cassette sub-family F member 2-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/570 (86%), Positives = 538/570 (94%)
Query: 52 ISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELN 111
+S EEALC KLEADA+LNAEARACTGSLA HP+SRD+KI+NFS+TFHGCEL+QDTMLELN
Sbjct: 61 LSEEEALCAKLEADARLNAEARACTGSLASHPRSRDIKISNFSVTFHGCELMQDTMLELN 120
Query: 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171
CGRRYGLLGLNGSGKSTLL+VLGNREVP+PD IDIFHLTREMPAS+K+AL CVMEVDEER
Sbjct: 121 CGRRYGLLGLNGSGKSTLLSVLGNREVPIPDAIDIFHLTREMPASNKTALQCVMEVDEER 180
Query: 172 VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTK 231
VRLEKLAE+LV C ++++QEQLMD+Y+RLDD+SADTAEARAA ILHGLGFT +MQQ T+
Sbjct: 181 VRLEKLAEELVDCPEEDAQEQLMDVYERLDDMSADTAEARAAGILHGLGFTSKMQQTPTR 240
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF 291
DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF
Sbjct: 241 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF 300
Query: 292 LNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGH 351
LNG+CTNIIHL K++LKYY GNYEAF KTR+ELLENQ KQYNWEQDQIAHMKNYIARFGH
Sbjct: 301 LNGICTNIIHLHKKQLKYYTGNYEAFVKTRMELLENQAKQYNWEQDQIAHMKNYIARFGH 360
Query: 352 GSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSD 411
GSAKLARQAQSKEKTLAKMV QGLT+KVT+DK + F FPSCG IPPPVIMVQNVSFRYSD
Sbjct: 361 GSAKLARQAQSKEKTLAKMVAQGLTEKVTSDKILNFYFPSCGTIPPPVIMVQNVSFRYSD 420
Query: 412 DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ 471
DGPWIY+NLEFGIDLDTRLALVGPNGAGKSTLL L+YGDL PS GM+RKNSHLR RYHQ
Sbjct: 421 DGPWIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPSSGMIRKNSHLRIGRYHQ 480
Query: 472 HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
HLHELLDLD+SPLDYM+++FP+VK+REEMRKIIGRYGLTGRQQVCPIRQLSDGQ+CRVVF
Sbjct: 481 HLHELLDLDMSPLDYMMKAFPDVKEREEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVF 540
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591
A+LAWQ PHLLL+DEPTNHLDMETIDALADAIN+F+GG+VLVSHDFRLINQVAEEIW+CE
Sbjct: 541 AWLAWQVPHLLLMDEPTNHLDMETIDALADAINEFDGGMVLVSHDFRLINQVAEEIWVCE 600
Query: 592 NGKVTKWEGNILDYKETLRAKVLKEKNKSA 621
NG VTKW+GNILDYKE L+ KVLK+ K A
Sbjct: 601 NGTVTKWQGNILDYKEHLKTKVLKDNQKRA 630
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242020704|ref|XP_002430792.1| ATP-dependent transporter, putative [Pediculus humanus corporis] gi|212515989|gb|EEB18054.1| ATP-dependent transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/614 (80%), Positives = 554/614 (90%), Gaps = 7/614 (1%)
Query: 19 GRGAAAPKKPTTSATND---VKPEQITNGVKQEPEEISPEEALCRKLEADAKLNAEARAC 75
G+ + KP + D K ++ GV EIS E+ALC KLEADA+LNAEAR+C
Sbjct: 23 GKKNTSSSKPQNNGAGDKEVTKNNEVNGGVTNGKLEISEEKALCEKLEADARLNAEARSC 82
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
TGSLAVHP+SRD+KI NFS+TFHGCEL+QDT+LELNCGRRYGLLGLNGSGKSTLLAVLGN
Sbjct: 83 TGSLAVHPRSRDIKIENFSVTFHGCELMQDTLLELNCGRRYGLLGLNGSGKSTLLAVLGN 142
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD 195
REVP+ DHIDIFHLTRE+PASDK+AL CVMEVDEER+RLE LAEQL A ++D+SQEQLMD
Sbjct: 143 REVPIQDHIDIFHLTREIPASDKTALQCVMEVDEERIRLENLAEQLAAQDNDDSQEQLMD 202
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+Y+RL+DISADTAE RAANILHGLGF+K MQ KK+KDFSGGWRMRIALARALYVKPHLLL
Sbjct: 203 VYERLEDISADTAEVRAANILHGLGFSKTMQDKKSKDFSGGWRMRIALARALYVKPHLLL 262
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LDEPTNHLDLDACVWLEEELKTYKRILV+ISHSQDFLNG+CTNI+HLDK++LKYY GNY+
Sbjct: 263 LDEPTNHLDLDACVWLEEELKTYKRILVVISHSQDFLNGICTNIMHLDKKRLKYYTGNYD 322
Query: 316 AFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGL 375
AF +TRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMV GL
Sbjct: 323 AFVRTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVAGGL 382
Query: 376 TDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGP 435
T+KVT+DKTV F FPSCG IPPPVIMVQNVSFRY+ + WIY+NLEFGIDLDTR+ALVGP
Sbjct: 383 TEKVTSDKTVHFYFPSCGTIPPPVIMVQNVSFRYNSNTAWIYKNLEFGIDLDTRVALVGP 442
Query: 436 NGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
NGAGKSTLL L+ G++ P+ GM+RKNSHLR ARYHQHLHELLDLDIS LDYM++SFPEVK
Sbjct: 443 NGAGKSTLLKLLCGEIIPTEGMIRKNSHLRIARYHQHLHELLDLDISALDYMMKSFPEVK 502
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
++EEMRKIIGRYGLTGRQQ+CPIRQLSDGQ+CRVVFAYLAWQ PHLLLLDEPTNHLDMET
Sbjct: 503 EKEEMRKIIGRYGLTGRQQICPIRQLSDGQRCRVVFAYLAWQCPHLLLLDEPTNHLDMET 562
Query: 556 IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLK 615
IDALADAINDFEGG+VLVSHDFRLINQVAEEIW+CENG +TKW GNIL+YKE L++K++K
Sbjct: 563 IDALADAINDFEGGMVLVSHDFRLINQVAEEIWVCENGTITKWNGNILNYKEHLKSKIIK 622
Query: 616 EKNKSAAVSNGKKK 629
KN + NGKKK
Sbjct: 623 -KNTNG---NGKKK 632
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193657341|ref|XP_001947490.1| PREDICTED: ATP-binding cassette sub-family F member 2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/622 (81%), Positives = 562/622 (90%), Gaps = 9/622 (1%)
Query: 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCR 60
MPSD+KK+Q QKKK+ AK R P +A+ D ++NG + P IS EE LC+
Sbjct: 1 MPSDSKKRQLQKKKDAAKARQNIKP-----AASKD--SNGVSNGDEVVP--ISEEELLCK 51
Query: 61 KLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLG 120
KLEADAKLNAEARACTGSLA HP+SRD+KI N SI+FHGCELLQDTMLELNCGRRYGL+G
Sbjct: 52 KLEADAKLNAEARACTGSLASHPRSRDIKIDNLSISFHGCELLQDTMLELNCGRRYGLIG 111
Query: 121 LNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
LNGSGKSTLL+VLGNREVP+P+ IDIFHLTREMPAS+KSAL CVMEVD+ER+RLEKL ++
Sbjct: 112 LNGSGKSTLLSVLGNREVPIPEQIDIFHLTREMPASEKSALKCVMEVDQERIRLEKLVDE 171
Query: 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
L+AC DDESQEQLMDIY+RLDDISADTAEARAANILHGLGFTK MQ +KTKDFSGGWRMR
Sbjct: 172 LIACPDDESQEQLMDIYERLDDISADTAEARAANILHGLGFTKAMQNQKTKDFSGGWRMR 231
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARALYV PHLLLLDEPTNHLDLDACVWLEEELK+YKRILVIISHSQDFLNG+CTN I
Sbjct: 232 IALARALYVTPHLLLLDEPTNHLDLDACVWLEEELKSYKRILVIISHSQDFLNGICTNTI 291
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
HLDK++LK YGGNY+AF +TR E LENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA
Sbjct: 292 HLDKKRLKSYGGNYDAFVRTREEQLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 351
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL 420
QSKEKTLAKMV QGLTDKVT+DK VTF FPSCG IPPPVIMVQNVSFRY+D+ P+IY+NL
Sbjct: 352 QSKEKTLAKMVAQGLTDKVTSDKLVTFHFPSCGTIPPPVIMVQNVSFRYNDNSPYIYKNL 411
Query: 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
EFGIDLDTRLALVGPNGAGKSTLL L+YG+L P+ GM+RKNSHLR ARYHQHLHELLDLD
Sbjct: 412 EFGIDLDTRLALVGPNGAGKSTLLKLLYGELFPTEGMIRKNSHLRIARYHQHLHELLDLD 471
Query: 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+SPL+YM+ SFPEVK+REEMRKIIGRYGLTGRQQVCPIRQLSDGQ+CRVVFAYLAWQ PH
Sbjct: 472 LSPLEYMMNSFPEVKEREEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVFAYLAWQTPH 531
Query: 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LLLLDEPTNHLDMETID+LADAIN F+GG+VLVSHDFRLI+QVAEEIWICENGK TKW+
Sbjct: 532 LLLLDEPTNHLDMETIDSLADAINHFDGGMVLVSHDFRLISQVAEEIWICENGKATKWQS 591
Query: 601 NILDYKETLRAKVLKEKNKSAA 622
ILDYKE L+ K+LK N SA+
Sbjct: 592 TILDYKEHLKKKILKNNNDSAS 613
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383851195|ref|XP_003701124.1| PREDICTED: ATP-binding cassette sub-family F member 2 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/604 (81%), Positives = 547/604 (90%), Gaps = 12/604 (1%)
Query: 26 KKPTTSA-----TNDVKPEQ-----ITNGVKQEPEEISPEEALCRKLEADAKLNAEARAC 75
KKP SA T D K I NG P IS EEALC KLEADA+LNAEAR+C
Sbjct: 24 KKPPQSAAQTKTTEDGKESSPGVGVIQNGTNGAP--ISAEEALCLKLEADARLNAEARSC 81
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
TGSLA HP+SRD+KI+NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN
Sbjct: 82 TGSLASHPRSRDIKISNFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 141
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD 195
REVP+P+ IDIFHLTREMPAS+K+AL CVMEVDEER+RLEKLAE+LV C+++++QEQLMD
Sbjct: 142 REVPIPEQIDIFHLTREMPASNKTALECVMEVDEERIRLEKLAEELVECDEEDAQEQLMD 201
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+Y+RL+D++ADTAEARAA+ILHGLGFT +MQ+ TKDFSGGWRMRIALARALYVKPHLLL
Sbjct: 202 VYERLEDMTADTAEARAAHILHGLGFTAKMQKTPTKDFSGGWRMRIALARALYVKPHLLL 261
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNG+CTNIIH++K++LKYY GNYE
Sbjct: 262 LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGICTNIIHVNKKQLKYYTGNYE 321
Query: 316 AFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGL 375
AF KTR+ELLENQ KQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMV QGL
Sbjct: 322 AFVKTRMELLENQAKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVAQGL 381
Query: 376 TDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGP 435
T+KV DK + F FPSCG IPPPVIMVQNVSFRY++D PWIY+NLEFGIDLDTR+ALVGP
Sbjct: 382 TEKVVNDKVLNFYFPSCGTIPPPVIMVQNVSFRYNEDSPWIYKNLEFGIDLDTRIALVGP 441
Query: 436 NGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
NGAGKSTLL L+YGDL P+ GM+RKNSHLR RYHQHLHELLDLD+SPLDYM+++FP+VK
Sbjct: 442 NGAGKSTLLKLLYGDLVPTSGMIRKNSHLRIGRYHQHLHELLDLDMSPLDYMMKAFPDVK 501
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
+REEMRKIIGRYGLTGRQQVCPIRQLSDGQ+CRVVFA+LAWQ PHLLLLDEPTNHLDMET
Sbjct: 502 EREEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMET 561
Query: 556 IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLK 615
IDALADAINDF+GG+VLVSHDFRLINQVAEEIW+CENG +TKW GNI+DYKE L+ KVL
Sbjct: 562 IDALADAINDFDGGMVLVSHDFRLINQVAEEIWVCENGTITKWSGNIIDYKEHLKNKVLN 621
Query: 616 EKNK 619
+ K
Sbjct: 622 DNQK 625
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357627330|gb|EHJ77066.1| ATP-binding cassette sub-family F member 2 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/627 (81%), Positives = 567/627 (90%), Gaps = 5/627 (0%)
Query: 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCR 60
MPSDAKK+ QQKKKEQA R + TT+ TN TNG +E E++ EEALC
Sbjct: 1 MPSDAKKRAQQKKKEQATNRNKKPVARVTTAETNGS-----TNGAVKEDRELTAEEALCL 55
Query: 61 KLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLG 120
KLE +AK+N+EAR+CTGSLAVH +SRD+KIANFSITF+G ELLQDT+LELNCGRRYGL+G
Sbjct: 56 KLEEEAKMNSEARSCTGSLAVHIRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVG 115
Query: 121 LNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
LNG GKS+LLAVLG REVP+PDHIDIFHLTREMPASDK+AL CVMEVDEER++LE+LAE+
Sbjct: 116 LNGCGKSSLLAVLGRREVPIPDHIDIFHLTREMPASDKTALQCVMEVDEERIKLERLAEE 175
Query: 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
L C+DDESQEQL+D+YDRLDD+SADTAEARAA+ILHGLGF+KEMQQK TKDFSGGWRMR
Sbjct: 176 LAQCDDDESQEQLLDVYDRLDDLSADTAEARAAHILHGLGFSKEMQQKATKDFSGGWRMR 235
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK YKRILV+ISHSQDFLNGVCTNII
Sbjct: 236 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKQYKRILVLISHSQDFLNGVCTNII 295
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
H+ KR+LKYY GNYEAF +TR+ELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA
Sbjct: 296 HMSKRRLKYYTGNYEAFVRTRMELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 355
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL 420
QSKEKTLAKMV QGLT+KVT DK + F FPSCGK+PPPVIMVQNVSFRY+D GPWIY+NL
Sbjct: 356 QSKEKTLAKMVAQGLTEKVTDDKILNFYFPSCGKVPPPVIMVQNVSFRYTDSGPWIYKNL 415
Query: 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
EFGIDLDTRLALVGPNGAGKSTLL L+YGDL PS GM+RKNSHLR RYHQHLHELLDLD
Sbjct: 416 EFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPSTGMIRKNSHLRIGRYHQHLHELLDLD 475
Query: 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+SPL+YM++ FPEV++REEMRKIIGRYGLTGRQQVCP+RQLSDGQ+CRVVFA+LAWQ PH
Sbjct: 476 LSPLEYMMKEFPEVREREEMRKIIGRYGLTGRQQVCPMRQLSDGQRCRVVFAWLAWQTPH 535
Query: 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LLL+DEPTNHLDMETIDALADAINDF+GG+VLVSHDFRLINQVAEEIWICENG VTKW+G
Sbjct: 536 LLLMDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQVAEEIWICENGTVTKWQG 595
Query: 601 NILDYKETLRAKVLKEKNKSAAVSNGK 627
IL YK+ L++K+LK+ +AA N K
Sbjct: 596 GILKYKDHLKSKILKDNADNAAKFNRK 622
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|114053001|ref|NP_001040334.1| ATP-binding cassette sub-family F member 2 [Bombyx mori] gi|95102546|gb|ABF51209.1| ATP-binding cassette sub-family F member 2 [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/622 (82%), Positives = 564/622 (90%), Gaps = 4/622 (0%)
Query: 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCR 60
MPSDAKK+ QQKKKEQA GR KKP TN+ + TNG+ +E E++ EEALC
Sbjct: 1 MPSDAKKRAQQKKKEQASGRN----KKPVVRVTNEDENGIGTNGISREDRELTAEEALCL 56
Query: 61 KLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLG 120
KLEA+AK+N+EAR+CTGSLAVHP+SRD+KIANFSITF+G ELLQDT+LELNCGRRYGL+G
Sbjct: 57 KLEAEAKMNSEARSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVG 116
Query: 121 LNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
LNG GKS+LLA LG REVP+P+HIDIFHLTREMPASDK+AL CVMEVDEERV+LEKLAE
Sbjct: 117 LNGCGKSSLLAALGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEM 176
Query: 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
L CEDDESQEQLMD+YDRLDD+SADTAEARAANILHGLGFTKEMQQK TKDFSGGWRMR
Sbjct: 177 LAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGFTKEMQQKATKDFSGGWRMR 236
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARALYVKPHLLLLDEPTNHLDLD CVWLEEELK YKRILV+ISHSQDFLNGVCTNI+
Sbjct: 237 IALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISHSQDFLNGVCTNIV 296
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
H+ KR+LKYY GNYEAF +TR+ELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA
Sbjct: 297 HMSKRRLKYYTGNYEAFVRTRMELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 356
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL 420
QSKEKTLAKMV QGLT+KV DK + F FPSCGK+PPPVIMVQNVSFRY+D GPWIY+NL
Sbjct: 357 QSKEKTLAKMVAQGLTEKVVDDKILNFYFPSCGKVPPPVIMVQNVSFRYTDSGPWIYKNL 416
Query: 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
EFGIDLDTRLALVGPNGAGKSTLL L+YGDL PS GM+RKNSHLR RYHQHLHELLDLD
Sbjct: 417 EFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPSTGMIRKNSHLRIGRYHQHLHELLDLD 476
Query: 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+SPLDYM++ FPEV++REEMRKIIGRYGLTGRQQVCP+RQLSDGQ+CRVVFA+LAWQ PH
Sbjct: 477 LSPLDYMMKEFPEVREREEMRKIIGRYGLTGRQQVCPMRQLSDGQRCRVVFAWLAWQTPH 536
Query: 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LLLLDEPTNHLDMETIDALADAINDF+GG+VLVSHDFRLINQVA EIWICENG TKWEG
Sbjct: 537 LLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQVANEIWICENGTTTKWEG 596
Query: 601 NILDYKETLRAKVLKEKNKSAA 622
IL YK+ L++K+LK+ SAA
Sbjct: 597 GILKYKDHLKSKILKDNADSAA 618
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340729637|ref|XP_003403104.1| PREDICTED: ATP-binding cassette sub-family F member 2-like [Bombus terrestris] gi|350411309|ref|XP_003489306.1| PREDICTED: ATP-binding cassette sub-family F member 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/579 (84%), Positives = 541/579 (93%), Gaps = 2/579 (0%)
Query: 41 ITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGC 100
I NG P +S EEALC KLEADA+LNAEAR+CTGSLA HP+SRD+KI+NFSITFHGC
Sbjct: 48 IQNGTNGLP--VSAEEALCMKLEADARLNAEARSCTGSLASHPRSRDIKISNFSITFHGC 105
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP+PD IDIFHLTREMPASDK+A
Sbjct: 106 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPIPDQIDIFHLTREMPASDKTA 165
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
L CVMEVDEER+RLEKLAE+LV CE++++QEQLMD+Y+RL+D+SADTAEARAA+ILHGLG
Sbjct: 166 LDCVMEVDEERIRLEKLAEELVECEEEDAQEQLMDVYERLEDMSADTAEARAAHILHGLG 225
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR 280
FT +MQ+ TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR
Sbjct: 226 FTAKMQKTPTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR 285
Query: 281 ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIA 340
ILVIISHSQDFLNG+CTNIIH++K++LKYYGGNYEAF KTR+ELLENQ+KQYNWEQDQIA
Sbjct: 286 ILVIISHSQDFLNGICTNIIHVNKKQLKYYGGNYEAFVKTRMELLENQVKQYNWEQDQIA 345
Query: 341 HMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVI 400
HMKNYIARFGHGSAKLARQAQSKEKTLAKMV QGLT+KV DK + F FPSCG IPPPVI
Sbjct: 346 HMKNYIARFGHGSAKLARQAQSKEKTLAKMVAQGLTEKVVNDKVLNFYFPSCGTIPPPVI 405
Query: 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
MVQNVSFRY++D PWIY+NLEFGIDLDTR+ALVGPNGAGKSTLL L+YGDL P+ GM+RK
Sbjct: 406 MVQNVSFRYNEDSPWIYKNLEFGIDLDTRIALVGPNGAGKSTLLKLLYGDLVPTSGMIRK 465
Query: 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ 520
NSHLR RYHQHLHELLDLD+SPLDYM+++FP+VK+REEMRKIIGRYGLTGRQQVCPIRQ
Sbjct: 466 NSHLRIGRYHQHLHELLDLDMSPLDYMMKAFPDVKEREEMRKIIGRYGLTGRQQVCPIRQ 525
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580
LSDGQ+CRVVFA+LAWQ PHLLLLDEPTNHLDMETIDALADAINDF+GG+VLVSHDFRLI
Sbjct: 526 LSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLI 585
Query: 581 NQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNK 619
NQVAEEIW+CENG VTKW GNILDYKE L+ KVL + K
Sbjct: 586 NQVAEEIWVCENGTVTKWSGNILDYKEHLKTKVLSDNQK 624
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380017217|ref|XP_003692556.1| PREDICTED: ATP-binding cassette sub-family F member 2 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/579 (84%), Positives = 540/579 (93%), Gaps = 2/579 (0%)
Query: 41 ITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGC 100
I NG P IS EEALC KLEADA+LNAEAR+CTGSLA HP+SRD+KI+NFSITFHGC
Sbjct: 46 IQNGTNGTP--ISAEEALCMKLEADARLNAEARSCTGSLASHPRSRDIKISNFSITFHGC 103
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP+P+ IDIFHLTREMPAS+K+A
Sbjct: 104 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPIPNQIDIFHLTREMPASNKTA 163
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
L CVMEVDEER+RLEKLAE+LV CE++++QEQLMD+Y+RL+D+SADTAEARAA+ILHGLG
Sbjct: 164 LECVMEVDEERIRLEKLAEELVECEEEDAQEQLMDVYERLEDMSADTAEARAAHILHGLG 223
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR 280
FT +MQ+ TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR
Sbjct: 224 FTAKMQKTPTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR 283
Query: 281 ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIA 340
ILVIISHSQDFLNG+CTNIIH++K++LKYY GNYEAF KTR+ELLENQ+KQYNWEQDQIA
Sbjct: 284 ILVIISHSQDFLNGICTNIIHVNKKQLKYYSGNYEAFVKTRMELLENQVKQYNWEQDQIA 343
Query: 341 HMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVI 400
HMKNYIARFGHGSAKLARQAQSKEKTLAKMV QGLT+KV DK + F FPSCG IPPPVI
Sbjct: 344 HMKNYIARFGHGSAKLARQAQSKEKTLAKMVAQGLTEKVVNDKVLNFYFPSCGTIPPPVI 403
Query: 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
MVQNVSFRY++D PWIY+NLEFGIDLDTR+ALVGPNGAGKSTLL L+YGDL P+ GM+RK
Sbjct: 404 MVQNVSFRYNEDSPWIYKNLEFGIDLDTRIALVGPNGAGKSTLLKLLYGDLVPTSGMIRK 463
Query: 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ 520
NSHLR RYHQHLHELLDLD+SPLDYM+++FP+VK+REEMRKIIGRYGLTGRQQVCPIRQ
Sbjct: 464 NSHLRIGRYHQHLHELLDLDMSPLDYMMKAFPDVKEREEMRKIIGRYGLTGRQQVCPIRQ 523
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580
LSDGQ+CRVVFA+LAWQ PHLLLLDEPTNHLDMETIDALADAINDF+GG+VLVSHDFRLI
Sbjct: 524 LSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLI 583
Query: 581 NQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNK 619
NQVAEEIW+CENG VTKW GNILDYKE L+ KVL + K
Sbjct: 584 NQVAEEIWVCENGTVTKWSGNILDYKEHLKTKVLSDNQK 622
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | ||||||
| FB|FBgn0030672 | 611 | CG9281 [Drosophila melanogaste | 0.917 | 0.944 | 0.801 | 4.4e-258 | |
| UNIPROTKB|Q75MJ1 | 634 | ABCF2 "ATP-binding cassette, s | 0.923 | 0.916 | 0.686 | 3.4e-219 | |
| UNIPROTKB|Q9UG63 | 623 | ABCF2 "ATP-binding cassette su | 0.923 | 0.932 | 0.686 | 3.4e-219 | |
| ZFIN|ZDB-GENE-030131-8714 | 613 | abcf2a "ATP-binding cassette, | 0.918 | 0.942 | 0.684 | 1.5e-218 | |
| RGD|1304942 | 627 | Abcf2 "ATP-binding cassette, s | 0.909 | 0.912 | 0.692 | 1.9e-218 | |
| UNIPROTKB|Q2KJA2 | 625 | ABCF2 "ATP-binding cassette su | 0.898 | 0.904 | 0.696 | 3.9e-218 | |
| MGI|MGI:1351657 | 628 | Abcf2 "ATP-binding cassette, s | 0.922 | 0.923 | 0.683 | 3.9e-218 | |
| UNIPROTKB|F1SSL4 | 572 | ABCF2 "Uncharacterized protein | 0.890 | 0.979 | 0.699 | 2.2e-217 | |
| UNIPROTKB|F1NIH9 | 623 | ABCF2 "Uncharacterized protein | 0.912 | 0.921 | 0.666 | 2.8e-208 | |
| UNIPROTKB|F1NII0 | 620 | ABCF2 "Uncharacterized protein | 0.907 | 0.920 | 0.664 | 1.2e-207 |
| FB|FBgn0030672 CG9281 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2484 (879.5 bits), Expect = 4.4e-258, P = 4.4e-258
Identities = 464/579 (80%), Positives = 518/579 (89%)
Query: 43 NGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCEL 102
NGV + E++ EE LC KLE +A+++AEAR+CTGSLAVHP+SRDVKIANFSITF G EL
Sbjct: 31 NGVPER--ELTEEEKLCAKLEEEARISAEARSCTGSLAVHPRSRDVKIANFSITFFGSEL 88
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
LQDTMLELNCGRRYGL+GLNG GKS+LLAVLG REVPVP HIDIFHLTRE+PAS KSAL
Sbjct: 89 LQDTMLELNCGRRYGLIGLNGCGKSSLLAVLGGREVPVPPHIDIFHLTREIPASSKSALQ 148
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
CVMEVDEER++LEKLAE+L E+D++QEQL+DIY+RLDD+SAD AE +AA ILHGLGF
Sbjct: 149 CVMEVDEERIKLEKLAEELAMSEEDDAQEQLIDIYERLDDMSADLAEVKAARILHGLGFD 208
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL 282
K MQQK+ KDFSGGWRMRIALARAL+VKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL
Sbjct: 209 KAMQQKQAKDFSGGWRMRIALARALFVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL 268
Query: 283 VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHM 342
V+ISHSQDFLNGVCTNIIHL ++LKYY GNYEAF +TR+ELLENQMKQYNWEQDQI+HM
Sbjct: 269 VLISHSQDFLNGVCTNIIHLTGKRLKYYTGNYEAFVRTRMELLENQMKQYNWEQDQISHM 328
Query: 343 KNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIMV 402
KNYIARFGHGSAKLARQAQSKEKTLAKMV QGL PSCGK+PPPVIMV
Sbjct: 329 KNYIARFGHGSAKLARQAQSKEKTLAKMVAQGLTEKVSDDKVLNFYFPSCGKVPPPVIMV 388
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
QNV+FRY+D+ PWIY+NLEFGIDLDTRLALVGPNGAGKSTLL L+YGDL P+ GM+RKNS
Sbjct: 389 QNVNFRYNDETPWIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNS 448
Query: 463 HLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLS 522
HLR ARYHQHLHELLDLD SPL+YM+++FP+VK++EEMRKIIGRYGLTGRQQVCPIRQLS
Sbjct: 449 HLRIARYHQHLHELLDLDASPLEYMMRAFPDVKEKEEMRKIIGRYGLTGRQQVCPIRQLS 508
Query: 523 DGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQ 582
DGQ+CRVVFA+LAWQ PHLLLLDEPTNHLDMETIDALADAINDF+GG+VLVSHDFRLINQ
Sbjct: 509 DGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQ 568
Query: 583 VAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNKSA 621
VAEEIW+CE VTKW+G ILDYK+ L+ K+ E K A
Sbjct: 569 VAEEIWVCEKETVTKWKGGILDYKDHLKNKITSENEKKA 607
|
|
| UNIPROTKB|Q75MJ1 ABCF2 "ATP-binding cassette, sub-family F (GCN20), member 2, isoform CRA_d" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2117 (750.3 bits), Expect = 3.4e-219, P = 3.4e-219
Identities = 401/584 (68%), Positives = 475/584 (81%)
Query: 35 DVKPE-QITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANF 93
DV E Q+ + E + + L ++LE A ARA TG LA HP S DV I N
Sbjct: 32 DVVTEPQVAEKNEANGRETTEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDVHIINL 91
Query: 94 SITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM 153
S+TFHG ELL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREM
Sbjct: 92 SLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREM 151
Query: 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
P SDK+ L CVMEVD ER LEK AE+L A ED E E+LM++Y+RL+++ AD AE RA+
Sbjct: 152 PPSDKTPLHCVMEVDTERAMLEKEAERL-AHEDAEC-EKLMELYERLEELDADKAEMRAS 209
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273
ILHGLGFT MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEE
Sbjct: 210 RILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE 269
Query: 274 ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYN 333
ELKT+KRILV++SHSQDFLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++
Sbjct: 270 ELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFH 329
Query: 334 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCG 393
WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KM+ GL P CG
Sbjct: 330 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCG 389
Query: 394 KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
KIPPPVIMVQNVSF+Y+ DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P
Sbjct: 390 KIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLP 449
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
+ GM+RK+SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+Q
Sbjct: 450 TDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQ 509
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLV 573
QV PIR LSDGQKCRV A+LAWQ PH+L LDEPTNHLD+ETIDALADAIN+FEGG++LV
Sbjct: 510 QVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLV 569
Query: 574 SHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEK 617
SHDFRLI QVA+EIW+CE +TKW G+IL YKE L++K++ E+
Sbjct: 570 SHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEE 613
|
|
| UNIPROTKB|Q9UG63 ABCF2 "ATP-binding cassette sub-family F member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2117 (750.3 bits), Expect = 3.4e-219, P = 3.4e-219
Identities = 401/584 (68%), Positives = 475/584 (81%)
Query: 35 DVKPE-QITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANF 93
DV E Q+ + E + + L ++LE A ARA TG LA HP S DV I N
Sbjct: 32 DVVTEPQVAEKNEANGRETTEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDVHIINL 91
Query: 94 SITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM 153
S+TFHG ELL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREM
Sbjct: 92 SLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREM 151
Query: 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
P SDK+ L CVMEVD ER LEK AE+L A ED E E+LM++Y+RL+++ AD AE RA+
Sbjct: 152 PPSDKTPLHCVMEVDTERAMLEKEAERL-AHEDAEC-EKLMELYERLEELDADKAEMRAS 209
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273
ILHGLGFT MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEE
Sbjct: 210 RILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE 269
Query: 274 ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYN 333
ELKT+KRILV++SHSQDFLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++
Sbjct: 270 ELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFH 329
Query: 334 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCG 393
WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KM+ GL P CG
Sbjct: 330 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCG 389
Query: 394 KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
KIPPPVIMVQNVSF+Y+ DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P
Sbjct: 390 KIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLP 449
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
+ GM+RK+SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+Q
Sbjct: 450 TDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQ 509
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLV 573
QV PIR LSDGQKCRV A+LAWQ PH+L LDEPTNHLD+ETIDALADAIN+FEGG++LV
Sbjct: 510 QVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLV 569
Query: 574 SHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEK 617
SHDFRLI QVA+EIW+CE +TKW G+IL YKE L++K++ E+
Sbjct: 570 SHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEE 613
|
|
| ZFIN|ZDB-GENE-030131-8714 abcf2a "ATP-binding cassette, sub-family F (GCN20), member 2a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
Identities = 402/587 (68%), Positives = 481/587 (81%)
Query: 37 KPEQITNGVKQEPE-------EISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVK 89
KPE NG ++PE E++ ++L ++L+ EARA TG LA HP S DV
Sbjct: 25 KPEDGVNGDAEKPEIQENGAAEVNGVDSLAKELDEFELKKTEARAVTGVLASHPNSTDVH 84
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
I++ S+TFHG ELL DT LELN GRRYGL+GLNG+GKS LL+ + +REVP+P+HIDI+HL
Sbjct: 85 ISSLSLTFHGQELLSDTSLELNSGRRYGLIGLNGTGKSMLLSAISHREVPIPEHIDIYHL 144
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE 209
TREM S+K+AL CVMEVDEER++LEK AE+L A ED E E+LM++Y+RL+++ AD A
Sbjct: 145 TREMAPSEKTALQCVMEVDEERIKLEKEAERL-AHEDSEC-EKLMELYERLEELDADKAS 202
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269
RA+ ILHGLGFT MQQKK KDFSGGWRMR+ALARAL++KP +LLLDEPTNHLDLDACV
Sbjct: 203 MRASRILHGLGFTTSMQQKKLKDFSGGWRMRVALARALFLKPFMLLLDEPTNHLDLDACV 262
Query: 270 WLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQM 329
WLEEEL +KRILV+ISHSQDFLNGVCTNIIHL +RKLKYY GNY+ + KTR EL ENQM
Sbjct: 263 WLEEELSQFKRILVLISHSQDFLNGVCTNIIHLHQRKLKYYTGNYDQYVKTREELEENQM 322
Query: 330 KQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXX 389
K++NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KMV GL
Sbjct: 323 KRFNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMVASGLTERVVNDKTLSFYF 382
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
P CGKIPPPVIMVQNVSFRYS++ P+IY+NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G
Sbjct: 383 PPCGKIPPPVIMVQNVSFRYSENTPYIYKNLEFGIDLDTRVALVGPNGAGKSTLLKLLTG 442
Query: 450 DLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
+L PS GM+RK+SH++ RYHQHL E L+LD+SPL+YM++ +PE+K++EEMRKIIGRYGL
Sbjct: 443 ELLPSDGMIRKHSHVKIGRYHQHLTEQLELDLSPLEYMMKCYPEIKEKEEMRKIIGRYGL 502
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
TG+QQV PIR LSDGQKCRV FA+LA Q PH+L LDEPTNHLD+ETIDALA+AINDFEGG
Sbjct: 503 TGKQQVSPIRNLSDGQKCRVCFAWLARQNPHMLFLDEPTNHLDIETIDALAEAINDFEGG 562
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616
++LVSHDFRL QVA+EIW+CE +TKW +IL YKE L++K+ K+
Sbjct: 563 MMLVSHDFRLTQQVAQEIWVCEKQTITKWSRDILAYKEHLKSKIDKQ 609
|
|
| RGD|1304942 Abcf2 "ATP-binding cassette, subfamily F (GCN20), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2110 (747.8 bits), Expect = 1.9e-218, P = 1.9e-218
Identities = 399/576 (69%), Positives = 472/576 (81%)
Query: 42 TNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCE 101
TNG +E + L ++LE A ARA TG LA HP S DV I N S+TFHG E
Sbjct: 46 TNG--RETTGDGEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQE 103
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
LL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREMP SDK+ L
Sbjct: 104 LLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDKTPL 163
Query: 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
CVMEVD ER LE+ AE+L A ED E E+LM++Y+RL+++ AD AE RA+ ILHGLGF
Sbjct: 164 QCVMEVDTERAMLEREAERL-AHEDAEC-EKLMELYERLEELDADKAEMRASRILHGLGF 221
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI 281
T MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEEELKT+KRI
Sbjct: 222 TPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRI 281
Query: 282 LVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAH 341
LV++SHSQDFLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++WEQDQIAH
Sbjct: 282 LVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAH 341
Query: 342 MKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIM 401
MKNYIARFGHGSAKLARQAQSKEKTL KM+ GL P CGKIPPPVIM
Sbjct: 342 MKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIM 401
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
VQNVSF+Y+ DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+
Sbjct: 402 VQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKH 461
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521
SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+QQV PIR L
Sbjct: 462 SHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNL 521
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLIN 581
SDGQKCRV A+LAWQ PH+L LDEPTNHLD+ETIDALADAIN+FEGG++LVSHDFRLI
Sbjct: 522 SDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQ 581
Query: 582 QVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEK 617
QVA+EIW+CE +TKW G+IL YKE L++K++ E+
Sbjct: 582 QVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEE 617
|
|
| UNIPROTKB|Q2KJA2 ABCF2 "ATP-binding cassette sub-family F member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2107 (746.8 bits), Expect = 3.9e-218, P = 3.9e-218
Identities = 395/567 (69%), Positives = 468/567 (82%)
Query: 51 EISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLEL 110
E + + L ++LE A ARA TG LA HP S D I N S+TFHG ELL DT LEL
Sbjct: 51 ETTEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLEL 110
Query: 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
N GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREMP SDK+ L CVMEVD E
Sbjct: 111 NSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTE 170
Query: 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
R LE+ AE+L A ED E E+L+++Y+RL+++ AD AE RA+ ILHGLGFT MQ+KK
Sbjct: 171 RAMLEREAERL-AHEDAEC-EKLLELYERLEELDADKAEMRASRILHGLGFTPAMQRKKL 228
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQD 290
KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEEELKT+KRILV++SHSQD
Sbjct: 229 KDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQD 288
Query: 291 FLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFG 350
FLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++WEQDQIAHMKNYIARFG
Sbjct: 289 FLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFG 348
Query: 351 HGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIMVQNVSFRYS 410
HGSAKLARQAQSKEKTL KM+ GL P CGKIPPPVIMVQNVSF+Y+
Sbjct: 349 HGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYT 408
Query: 411 DDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470
DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+SH++ RYH
Sbjct: 409 KDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYH 468
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
QHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+QQV PIR LSDGQKCRV
Sbjct: 469 QHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVC 528
Query: 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWIC 590
A+LAWQ PH+L LDEPTNHLD+ETIDALADAINDFEGG++LVSHDFRLI QVA+EIW+C
Sbjct: 529 LAWLAWQNPHMLFLDEPTNHLDIETIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVC 588
Query: 591 ENGKVTKWEGNILDYKETLRAKVLKEK 617
E +TKW G+IL YKE L++K++ E+
Sbjct: 589 EKQTITKWPGDILAYKEHLKSKLVGEE 615
|
|
| MGI|MGI:1351657 Abcf2 "ATP-binding cassette, sub-family F (GCN20), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2107 (746.8 bits), Expect = 3.9e-218, P = 3.9e-218
Identities = 398/582 (68%), Positives = 473/582 (81%)
Query: 36 VKPEQITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSI 95
V E+I +E + L ++LE A ARA TG LA HP S DV I N S+
Sbjct: 39 VAEEKIEEANGRETTGDGEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSL 98
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA 155
TFHG ELL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREMP
Sbjct: 99 TFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPP 158
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
S+K+ L CVMEVD ER LE+ AE+L A ED E E+LM++Y+RL+++ AD AE RA+ I
Sbjct: 159 SEKTPLQCVMEVDTERAMLEREAERL-AHEDAEC-EKLMELYERLEELDADKAEMRASRI 216
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
LHGLGFT MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEEEL
Sbjct: 217 LHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEEL 276
Query: 276 KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWE 335
KT+KRILV++SHSQDFLNGVCTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++WE
Sbjct: 277 KTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWE 336
Query: 336 QDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKI 395
QDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KM+ GL P CGKI
Sbjct: 337 QDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKI 396
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
PPPVIMVQNVSF+Y+ DGP IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+
Sbjct: 397 PPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTD 456
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
GM+RK+SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGLTG+QQV
Sbjct: 457 GMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQV 516
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575
PIR LSDGQKCRV A+LAWQ PH+L LDEPTNHLD+ETIDALADAIN+FEGG++LVSH
Sbjct: 517 SPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSH 576
Query: 576 DFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEK 617
DFRLI QVA+EIW+CE +TKW G+IL YKE L++K++ E+
Sbjct: 577 DFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEE 618
|
|
| UNIPROTKB|F1SSL4 ABCF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2100 (744.3 bits), Expect = 2.2e-217, P = 2.2e-217
Identities = 393/562 (69%), Positives = 466/562 (82%)
Query: 56 EALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRR 115
+ L ++LE A ARA TG LA HP S D I N S+TFHG ELL DT LELN GRR
Sbjct: 3 DLLTKELEDFEMKKAAARAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLELNSGRR 62
Query: 116 YGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175
YGL+GLNG GKS LL+ +G REVP+P+HIDI+HLTREMP SDK+ L CVMEVD ER LE
Sbjct: 63 YGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAMLE 122
Query: 176 KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235
+ AE+L A ED E E+L+++Y+RL+++ AD AE RA+ ILHGLGFT MQ+KK KDFSG
Sbjct: 123 REAERL-AHEDAEC-EKLLELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSG 180
Query: 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGV 295
GWRMR+ALARAL+++P +LLLDEPTNHLDLDACVWLEEELKT+KRILV++SHSQDFLNGV
Sbjct: 181 GWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGV 240
Query: 296 CTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAK 355
CTNIIH+ +KLKYY GNY+ + KTRLEL ENQMK+++WEQDQIAHMKNYIARFGHGSAK
Sbjct: 241 CTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAK 300
Query: 356 LARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIMVQNVSFRYSDDGPW 415
LARQAQSKEKTL KM+ GL P CGKIPPPVIMVQNVSF+Y+ DGP
Sbjct: 301 LARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPC 360
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
IY NLEFGIDLDTR+ALVGPNGAGKSTLL L+ G+L P+ GM+RK+SH++ RYHQHL E
Sbjct: 361 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQE 420
Query: 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
LDLD+SPL+YM++ +PE+K++EEMRKIIGRYGL+G+QQV PIR LSDGQKCRV A+LA
Sbjct: 421 QLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLSGKQQVSPIRNLSDGQKCRVCLAWLA 480
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
WQ PH+L LDEPTNHLD+ETIDALADAIN+FEGG++LVSHDFRLI QVA+EIW+CE +
Sbjct: 481 WQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTI 540
Query: 596 TKWEGNILDYKETLRAKVLKEK 617
TKW G+IL YKE L++KV+ E+
Sbjct: 541 TKWPGDILAYKEHLKSKVVGEE 562
|
|
| UNIPROTKB|F1NIH9 ABCF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2014 (714.0 bits), Expect = 2.8e-208, P = 2.8e-208
Identities = 394/591 (66%), Positives = 471/591 (79%)
Query: 38 PEQITNG-VKQEPEEI-SPE---------EALCRKLEADAKLN-AEARACTGSLAVHPKS 85
PE+ NG EP+E+ +PE +AL ++LE D +L A ARA TG LA HP S
Sbjct: 27 PEE--NGDAGTEPQEVRAPEANGTPLPEVDALTKELE-DFELKKAAARAVTGVLASHPNS 83
Query: 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
DV I N S+TFHG ELL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HID
Sbjct: 84 TDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHID 143
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
I+HLTREMP SDK+ L CVMEVD ER LE+ AE+L A ED E E+LM++Y+RL+++ A
Sbjct: 144 IYHLTREMPPSDKTPLQCVMEVDTERSMLEREAERL-AHEDAEC-EKLMELYERLEELDA 201
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
D AEARA+ ILHGLGFT MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDL
Sbjct: 202 DKAEARASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL 261
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELL 325
DACVWLEEELKT+KRILV+ISHSQDFLNG+CTNIIH+ RKLKYY GNY+ + KTRLEL
Sbjct: 262 DACVWLEEELKTFKRILVLISHSQDFLNGICTNIIHMHNRKLKYYTGNYDQYVKTRLELE 321
Query: 326 ENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXX 385
ENQMK+++WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KM+ GL
Sbjct: 322 ENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVNDKRM 381
Query: 386 XXXXPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445
G V+++ V PWIY NL+FGIDLDTR+ALVGPNGAGKSTLL
Sbjct: 382 SLHELLQGSSKGCVLLLHIVYNDLCGLQPWIYNNLDFGIDLDTRVALVGPNGAGKSTLLK 441
Query: 446 LIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
L+ G+L P+ GM+RK+SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIG
Sbjct: 442 LLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIG 501
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
RYGLTG+QQV PIR LSDGQKCRV FA+LAWQ PH+L LDEPTNHLD+ETIDALADAIND
Sbjct: 502 RYGLTGKQQVSPIRNLSDGQKCRVCFAWLAWQNPHMLFLDEPTNHLDIETIDALADAIND 561
Query: 566 FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616
FEGG++LVSHDFRLI QVA+EIW+CE +TKW+G+IL YKE L++K++ E
Sbjct: 562 FEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWQGDILAYKEHLKSKLVDE 612
|
|
| UNIPROTKB|F1NII0 ABCF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
Identities = 393/591 (66%), Positives = 471/591 (79%)
Query: 38 PEQITNG-VKQEPEEI-SPE---------EALCRKLEADAKLN-AEARACTGSLAVHPKS 85
PE+ NG EP+E+ +PE +AL ++LE D +L A ARA TG LA HP S
Sbjct: 27 PEE--NGDAGTEPQEVRAPEANGTPLPEVDALTKELE-DFELKKAAARAVTGVLASHPNS 83
Query: 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
DV I N S+TFHG ELL DT LELN GRRYGL+GLNG GKS LL+ +G REVP+P+HID
Sbjct: 84 TDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHID 143
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
I+HLTREMP SDK+ L CVMEVD ER LE+ AE+L A ED E E+LM++Y+RL+++ A
Sbjct: 144 IYHLTREMPPSDKTPLQCVMEVDTERSMLEREAERL-AHEDAEC-EKLMELYERLEELDA 201
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
D AEARA+ ILHGLGFT MQ+KK KDFSGGWRMR+ALARAL+++P +LLLDEPTNHLDL
Sbjct: 202 DKAEARASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDL 261
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELL 325
DACVWLEEELKT+KRILV+ISHSQDFLNG+CTNIIH+ RKLKYY GNY+ + KTRLEL
Sbjct: 262 DACVWLEEELKTFKRILVLISHSQDFLNGICTNIIHMHNRKLKYYTGNYDQYVKTRLELE 321
Query: 326 ENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXX 385
ENQMK+++WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTL KM+ GL
Sbjct: 322 ENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVNDKAF 381
Query: 386 XXXXPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445
+ + V Q + + PWIY NL+FGIDLDTR+ALVGPNGAGKSTLL
Sbjct: 382 GIDFLA---VSIRVRWEQRCAVTWRKRVPWIYNNLDFGIDLDTRVALVGPNGAGKSTLLK 438
Query: 446 LIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
L+ G+L P+ GM+RK+SH++ RYHQHL E LDLD+SPL+YM++ +PE+K++EEMRKIIG
Sbjct: 439 LLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIG 498
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
RYGLTG+QQV PIR LSDGQKCRV FA+LAWQ PH+L LDEPTNHLD+ETIDALADAIND
Sbjct: 499 RYGLTGKQQVSPIRNLSDGQKCRVCFAWLAWQNPHMLFLDEPTNHLDIETIDALADAIND 558
Query: 566 FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616
FEGG++LVSHDFRLI QVA+EIW+CE +TKW+G+IL YKE L++K++ E
Sbjct: 559 FEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWQGDILAYKEHLKSKLVDE 609
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9FJH6 | AB1F_ARATH | No assigned EC number | 0.6440 | 0.8616 | 0.9109 | yes | N/A |
| O05519 | YDIF_BACSU | No assigned EC number | 0.3052 | 0.8171 | 0.8006 | yes | N/A |
| Q9UG63 | ABCF2_HUMAN | No assigned EC number | 0.6823 | 0.9745 | 0.9839 | yes | N/A |
| P40024 | ARB1_YEAST | No assigned EC number | 0.5174 | 0.8585 | 0.8852 | yes | N/A |
| Q2KJA2 | ABCF2_BOVIN | No assigned EC number | 0.7019 | 0.8982 | 0.904 | yes | N/A |
| Q8T6B7 | ABCF2_DICDI | No assigned EC number | 0.5456 | 0.8823 | 0.9359 | yes | N/A |
| Q99LE6 | ABCF2_MOUSE | No assigned EC number | 0.6704 | 0.9523 | 0.9538 | yes | N/A |
| O42943 | YBP8_SCHPO | No assigned EC number | 0.4689 | 0.9570 | 0.9741 | yes | N/A |
| Q8SRV5 | ABCF3_ENCCU | No assigned EC number | 0.3737 | 0.7186 | 0.8158 | yes | N/A |
| P44808 | Y658_HAEIN | No assigned EC number | 0.3722 | 0.8330 | 0.8213 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 629 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-177 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-165 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-118 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-87 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-64 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-62 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-55 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-50 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-35 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-26 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-26 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-25 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-23 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-22 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 8e-21 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-18 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-18 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-17 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-17 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-16 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-16 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-16 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-16 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-16 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-16 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-16 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-15 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-15 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-15 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-15 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-15 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-15 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-14 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-14 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-14 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-14 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-14 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-13 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-11 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-11 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-11 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-11 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-11 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-11 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-10 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-10 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-10 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-10 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-10 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-09 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-09 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-09 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 8e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-08 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-08 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-08 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-08 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-07 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-07 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 8e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 9e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-06 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-06 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-06 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-05 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 5e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-05 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 8e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-04 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 1e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-04 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-04 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 4e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-04 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-04 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 0.001 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.001 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.002 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.002 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 0.002 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.003 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.003 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 0.003 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.003 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.004 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.004 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.004 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.004 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.004 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.004 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 512 bits (1321), Expect = e-177
Identities = 211/532 (39%), Positives = 312/532 (58%), Gaps = 16/532 (3%)
Query: 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
+ + N S+ + LL++ L LN G R GL+G NG+GKSTLL +L P +
Sbjct: 1 MSMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 145 D------IFHLTREMPA-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY 197
+ +L++E P +K+ L V+E E L E+ A D E L ++
Sbjct: 61 TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
L+++ T EARA L GLGF E + SGGWR R+ALARAL +P LLLLD
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 258 EPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
EPTNHLDL++ WLE+ LK Y ++++SH + FL+ V T+I+ LD+ KL Y GNY ++
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238
Query: 318 CKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTD 377
+ + E L + Y +Q ++A + +I R ++K A++A+S+ K L K+ + +
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEE 297
Query: 378 K-VTTDKTVTFTFPSCGKI-PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGP 435
+ V K + F FP GK V+ +NVS Y D G + ++L F ID R+A+VGP
Sbjct: 298 RPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGP 356
Query: 436 NGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
NGAGKSTLL L+ G+L P G V+ ++ + QH + LD D + L+ + + FP+
Sbjct: 357 NGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH-RDELDPDKTVLEELSEGFPD-G 414
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
D +E+R +GR+G TG Q P+ LS G+K R++ A L Q P+LLLLDEPTNHLD+E+
Sbjct: 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 556 IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
++AL +A+ DFEG ++LVSHD +++VA IW+ E KV ++EG DY E
Sbjct: 475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 490 bits (1263), Expect = e-165
Identities = 242/552 (43%), Positives = 350/552 (63%), Gaps = 29/552 (5%)
Query: 83 PKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VP 141
P +D+ + NFSI+ G +L+ D + L GR YGL+G NG+GK+T L + + +P
Sbjct: 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP 232
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA------------------ 183
+ I H+ +E+ D +AL CV+ D ER +L + QLVA
Sbjct: 233 KNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGAN 292
Query: 184 ---CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
+ D ++L +IY RL+ I A TAEARAA+IL GL FT EMQ K TK FSGGWRMR
Sbjct: 293 KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMR 352
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARAL+++P LLLLDEPTNHLDL A +WLE L + + +++SH+++FLN V T+I+
Sbjct: 353 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
HL +KL Y G+Y+ F +TR E L+NQ K + + +HM+ +I +F + +AK A
Sbjct: 413 HLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRY-NAKRASLV 471
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIP-PPVIMVQNVSFRYSDDGPWIYRN 419
QS+ K L ++ G D V D F FP+ P PP+I + SF Y GP +++N
Sbjct: 472 QSRIKALDRL---GHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYP-GGPLLFKN 527
Query: 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479
L FGIDLD+R+A+VGPNG GKST+L LI G+L PS G V +++ +R A + QH + LDL
Sbjct: 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDL 587
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539
+PL YM++ FP V + +++R +G +G+TG + P+ LS GQK RV FA + ++ P
Sbjct: 588 SSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 646
Query: 540 HLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
H+LLLDEP+NHLD++ ++AL + F+GG+++VSHD LI+ +E+W+ GKVT +
Sbjct: 647 HILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFH 706
Query: 600 GNILDYKETLRA 611
G DYK+TL++
Sbjct: 707 GTFHDYKKTLQS 718
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-118
Identities = 200/514 (38%), Positives = 307/514 (59%), Gaps = 16/514 (3%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVPDHIDIFHLTREMPA 155
LL + +N G++ GL+G NG GKSTLLA+L N P + + + +E PA
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
+ AL V++ D E +LE QL + + I+ +LD I A T +RAA++
Sbjct: 76 LPQPALEYVIDGDREYRQLEA---QLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
LHGLGF+ E ++ DFSGGWRMR+ LA+AL + LLLLDEPTNHLDLDA +WLE+ L
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 276 KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWE 335
K+Y+ L++ISH +DFL+ + IIH++++ L Y GNY +F R L Q Y +
Sbjct: 193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQ 252
Query: 336 QDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKI 395
Q+++AH+++YI RF + K A+QAQS+ K L +M L D F+F + +
Sbjct: 253 QERVAHLQSYIDRFRAKATK-AKQAQSRIKMLERM---ELIAPAHVDNPFHFSFRAPESL 308
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P P++ ++ VS Y D I +++ + +R+ L+G NGAGKSTL+ L+ G+L P
Sbjct: 309 PNPLLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS 366
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
G + ++ + QH E L D SPL ++ + P+ + +++R +G +G G +
Sbjct: 367 GEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE-QKLRDYLGGFGFQGDKVT 425
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575
R+ S G+K R+V A + WQ P+LLLLDEPTNHLD++ AL +A+ DFEG LV+VSH
Sbjct: 426 EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSH 485
Query: 576 DFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609
D L+ +++++ +GKV ++G++ DY++ L
Sbjct: 486 DRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWL 519
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 3e-87
Identities = 169/523 (32%), Positives = 280/523 (53%), Gaps = 45/523 (8%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR-------EMPASDKSALTCVM 165
G RYGL+G NG GKST + +LG P ++ + R + + + L V+
Sbjct: 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86
Query: 166 -------EVDEERVRLEKLAEQLVACEDD-------ESQEQLMDIYDRLDDISADTAEAR 211
EV +ER R+ L E E+D E + MD Y TAEAR
Sbjct: 87 MGHTELWEVKQERDRIYALPE---MSEEDGMKVADLEVKFAEMDGY---------TAEAR 134
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
A +L G+G +E + + GW++R+ LA+AL+ P +LLLDEPTN+LD++ WL
Sbjct: 135 AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL 194
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQ 331
E+ L ++IISH + FLN VCT++ LD +L+ Y GNY+ + + E +
Sbjct: 195 EDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD 254
Query: 332 YNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTD-KVTTDKTVTFTFP 390
++ QIA ++++++RF ++K A+QA S+ K + K+ L + K ++ + F
Sbjct: 255 NAKKKAQIAELQSFVSRFSANASK-AKQATSRAKQIDKIK---LEEVKPSSRQNPFIRFE 310
Query: 391 SCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
K+ + V+N++ + D+GP +++NL ++ RLA++G NG GK+TLL + G+
Sbjct: 311 QDKKLHRNALEVENLTKGF-DNGP-LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368
Query: 451 LTPSVGMVRKNSHLRFARYHQ-HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
L P G V+ + + Y Q H ++ + D++ D+M Q E D + +R +GR
Sbjct: 369 LEPDSGTVKWSENANIGYYAQDHAYD-FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF 427
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
+ ++ LS G+K R++F L Q P++L++DEPTNH+DME+I++L A+ +EG
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGT 487
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
L+ VSHD ++ +A I V + G Y+E LR++
Sbjct: 488 LIFVSHDREFVSSLATRIIEITPDGVVDFSGT---YEEYLRSQ 527
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 3e-64
Identities = 173/580 (29%), Positives = 290/580 (50%), Gaps = 60/580 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD----- 142
+ I ++F LL + L + R L+G NG+GKSTL+ +L N EV + D
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-NGEVLLDDGRIIY 62
Query: 143 --HIDIFHLTREMP-ASDKSALTCVME-VDEERVRLEKLAEQLVACEDDESQE---QLMD 195
+ + L ++ P + + V E ++E+ L++ + E D S++ +L
Sbjct: 63 EQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAK 122
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+ ++LD + E R +L LG + SGGW + AL RAL P +LL
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGLDPD---AALSSLSGGWLRKAALGRALVSNPDVLL 179
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LDEPTNHLD++ WLE LKT++ ++ ISH + F+ + T I+ LD+ KL Y GNY+
Sbjct: 180 LDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239
Query: 316 AFCKTRLELLENQMKQYNWEQDQ-IAHMKNYI-----ARF----GHGSA-KLARQAQSKE 364
+ + E L + Q N E D+ +A + +I AR G A K R+ +S+
Sbjct: 240 QYLLEKEEALRVEELQ-NAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSER 298
Query: 365 KTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGI 424
+ + G T K+ ++ GKI V ++NV+ Y DG + ++ +
Sbjct: 299 REV-----MG-TAKMQVEEAS-----RSGKI---VFEMENVN--YQIDGKQLVKDFSAQV 342
Query: 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPL 484
++AL+GPNG GK+TLL L+ G L G + + L A + QH LD + + +
Sbjct: 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQH-RAELDPEKTVM 401
Query: 485 DYMLQSFPEVKDREEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
D + + EV R ++G + ++ + P++ LS G++ R++ A L + +L
Sbjct: 402 DNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461
Query: 542 LLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEG 600
L+LDEPTN LD+ET++ L + ++ ++G ++LVSHD + ++ E WI E NGK+ ++ G
Sbjct: 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVG 521
Query: 601 NILDYKE------TLRAKVLKEKN-----KSAAVSNGKKK 629
D ++ L+ +K+K K+ V KK
Sbjct: 522 GYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKK 561
|
Length = 635 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 3e-62
Identities = 170/543 (31%), Positives = 264/543 (48%), Gaps = 66/543 (12%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTREMP 154
E+L+D L G + G+LGLNG+GKSTLL ++ N E I + +L +E P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQE-P 77
Query: 155 ASDKSALTCVMEVDEERV--------RLEKLAEQLVACEDD-----ESQEQLMDIYDRLD 201
D + T V E EE V R +++ + + D Q +L +I D D
Sbjct: 78 QLDPT-KT-VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAAD 135
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
D A + L TK SGG R R+AL R L KP +LLLDEPTN
Sbjct: 136 AWDLDRKLEIAMDALR----CPPWDADVTK-LSGGERRRVALCRLLLSKPDMLLLDEPTN 190
Query: 262 HLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321
HLD ++ WLE+ L+ Y +V ++H + FL+ V I+ LD+ + + GNY ++ + +
Sbjct: 191 HLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQK 250
Query: 322 LELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLA--KMVNQGLTDKV 379
+ LE + K+ + Q + ++ S K ARQA+SK + ++++Q +
Sbjct: 251 EKRLEQEEKEESARQKALKRELEWVRS----SPK-ARQAKSKARLARYEELLSQEFQKRN 305
Query: 380 TTDKTVTFTFPSCGKIPPP------VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALV 433
T + IPP VI +N+S + D + +L F + + ++
Sbjct: 306 ETAEIY---------IPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVI 354
Query: 434 GPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD------ISP-LDY 486
GPNGAGKSTL +I G P G ++ ++ A Q + LD + IS LD
Sbjct: 355 GPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKTVWEEISGGLDI 413
Query: 487 MLQSFPEVKDREEM-RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ ++ RE R +GR+ G Q + QLS G++ RV A ++LLLD
Sbjct: 414 I-----QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468
Query: 546 EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEGNILD 604
EPTN LD+ET+ AL +A+ +F G V++SHD ++++A I E + V +EGN +
Sbjct: 469 EPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSE 528
Query: 605 YKE 607
Y+E
Sbjct: 529 YEE 531
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-55
Identities = 168/534 (31%), Positives = 259/534 (48%), Gaps = 80/534 (14%)
Query: 117 GLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G+LGLNG+GKSTLL ++ E I + +L +E P D T V E EE
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQE-PQLDPE-KT-VRENVEE 93
Query: 171 RV--------RLEKLAEQLVACEDD-----ESQEQLMDIYDRLDDISADTAEARAANILH 217
V R ++ + D Q +L +I D D D+ A + L
Sbjct: 94 GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153
Query: 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
K TK SGG R R+AL R L KP +LLLDEPTNHLD ++ WLE+ L
Sbjct: 154 ----CPPWDAKVTK-LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQD 337
Y +V ++H + FL+ V I+ LD+ + + GNY ++ + + + L + KQ Q
Sbjct: 209 YPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQK 268
Query: 338 QIAHMKNYIARFGHGSAKLARQAQSKEKTLA---KMVNQGLTDKVTTDKTVTFTFPSCGK 394
+ ++ + S K ARQA+SK + LA +++++ + T++
Sbjct: 269 ALKRELEWVRQ----SPK-ARQAKSKAR-LARYEELLSEEYQKRNETNEIF--------- 313
Query: 395 IPPP------VIMVQNVSFRYSDDGPWIYRNLEF-----GIDLDTRLALVGPNGAGKSTL 443
IPP VI +N+S + D + +L F GI + ++GPNGAGKSTL
Sbjct: 314 IPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGI-----VGIIGPNGAGKSTL 366
Query: 444 LNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD------ISP-LDYMLQSFPEVKD 496
+I G P G ++ ++ A Q + LD + IS LD + +V +
Sbjct: 367 FKMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKTVWEEISGGLDII-----KVGN 420
Query: 497 REEM--RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R E+ R +GR+ G Q + LS G++ R+ A Q ++LLLDEPTN LD+E
Sbjct: 421 R-EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEGNILDYKE 607
T+ AL +A+ +F G V++SHD ++++A I E + +V +EGN +Y+E
Sbjct: 480 TLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-50
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 51/195 (26%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++N+S Y + +++ I+ R+ LVG NGAGKSTLL LI G+L P G+V
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
S ++ + Q
Sbjct: 59 WGSTVKIGYFEQ------------------------------------------------ 70
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRL 579
LS G+K R+ A L + P+LLLLDEPTNHLD+E+I+AL +A+ ++ G ++LVSHD
Sbjct: 71 -LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129
Query: 580 INQVAEEIWICENGK 594
++QVA +I E+GK
Sbjct: 130 LDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-35
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292
SGG +MR+ALA+ L P+LLLLDEPTNHLDL++ LEE LK Y ++++SH + FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 293 NGVCTNIIHLDKRK 306
+ V T II L+ K
Sbjct: 131 DQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-33
Identities = 84/321 (26%), Positives = 136/321 (42%), Gaps = 54/321 (16%)
Query: 3 SDAKKKQQQKKKEQAK-GRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRK 61
+ +K+Q++ KEQ RG AA K A + +K + E + + L +
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309
Query: 62 LEADAKLNAEARACTGSLAVHPKSRDV-KIANFSITFHG-CELLQDTMLELNCGRRYGLL 119
K + V + N S + G LL+D ++ G R ++
Sbjct: 310 FPPPGK---------------RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIV 354
Query: 120 GLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAE 179
G NG+GKSTLL L + V K+ E
Sbjct: 355 GPNGAGKSTLL----------------------------KLLAGELGPLSGTV---KVGE 383
Query: 180 QLVACEDDESQEQLMD---IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236
+ D+ +++L + + L + D E L GFT E Q+K SGG
Sbjct: 384 TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGG 443
Query: 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVC 296
+ R+ LA+ L P+LLLLDEPTNHLD+++ LEE L ++ ++++SH + FL+ V
Sbjct: 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA 503
Query: 297 TNIIHLDKRKLKYYGGNYEAF 317
T I ++ K++ + G YE +
Sbjct: 504 TRIWLVED-KVEEFEGGYEDY 523
|
Length = 530 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 32/223 (14%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
P+I V+N++ Y + ++ ++ AL+GPNGAGKSTLL I G L PS G
Sbjct: 2 MPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 457 MVR--------KNSHLRFARYHQHLHELLDLDISPLDYM---------LQSFPEVKDREE 499
++ + LR Q I+ D + KD+E+
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 500 MRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
+ + + R G+ RQ I +LS GQK RV+ A LA Q P LLLLDEP +D+
Sbjct: 120 VDEALERVGMEDLRDRQ----IGELSGGQKQRVLLARALA-QNPDLLLLDEPFTGVDVAG 174
Query: 556 IDALADAINDF--EGGLVL-VSHDFRLINQVAEEIWICENGKV 595
+ D + + EG VL V+HD L+ + + IC N +
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLNRHL 216
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-27
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++N+SF Y D ++ I + +VGPNG+GKSTLL L+ G L P+ G V +
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 462 ----SHLRFARYHQHL--------HELL------DLDISPLDYMLQSFPEVKDREEMRKI 503
+ L + + + ++ + L EE+ +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------PEEEIEER 114
Query: 504 IG----RYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDA 558
+ GL G + LS GQK RV A LA P +LLLDEPT LD
Sbjct: 115 VEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLA-MDPDILLLDEPTAGLDPAGRRE 172
Query: 559 LADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGK 594
L + + EG +++V+HD L+ ++A+ + + E+GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 2e-26
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 49/211 (23%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
V+N+S Y G + +L I+ + ++GPNGAGKSTLL + G L PS G +
Sbjct: 2 VENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 460 -----KNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
S AR ++ + L+ L ++ L DR
Sbjct: 60 GKDLASLSPKELARKIAYVPQALELLGLAHL----------ADR---------------- 93
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METIDALADAINDF 566
P +LS G++ RV+ A Q P +LLLDEPT+HLD +E + LA
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-- 148
Query: 567 EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
+V+V HD L + A+ + + ++G++
Sbjct: 149 -KTVVMVLHDLNLAARYADRVILLKDGRIVA 178
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 54/210 (25%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSF Y + +++ I ++A+VGP+G+GKSTLL L+ P+ G +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP-- 517
+ D+ L D E +RK I P
Sbjct: 61 IDGV----------------DLRDL-----------DLESLRKNIA---------YVPQD 84
Query: 518 -------IRQ--LSDGQKCRVVFA--YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
IR+ LS GQ+ R+ A L + P +L+LDE T+ LD ET + +A+
Sbjct: 85 PFLFSGTIRENILSGGQRQRIAIARALL--RDPPILILDEATSALDPETEALILEALRAL 142
Query: 567 EGG--LVLVSHDFRLINQVAEEIWICENGK 594
G +++++H I A+ I + ++G+
Sbjct: 143 AKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
V++++ Y G + ++ F + LA+VGPNGAGKSTLL I G L P+ G +R
Sbjct: 2 VEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 460 ----KNSHLRFARYHQHLHELLDLDISPLDYML---------QSFPEVKDREEMRKIIGR 506
+ R Q D IS D +L D+ ++ + + R
Sbjct: 60 GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER 119
Query: 507 YGLTG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
GL+ + I +LS GQ+ RV+ A Q P LLLLDEP +D +T + + + + +
Sbjct: 120 VGLSELADR--QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177
Query: 566 F--EG-GLVLVSHDFRLINQVAE 585
EG +++V+HD + V E
Sbjct: 178 LRREGMTILVVTHD---LGLVLE 197
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-26
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 34/226 (15%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
+I +N+SFRY +++ I+ R+ L+GPNG+GKSTLL L+ G L P+ G
Sbjct: 2 RMIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 457 ---------------MVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500
+R+ L F Q ++ ++ + L++ REE+
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEV---AFGLENLGL--PREEI 115
Query: 501 RKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMET 555
+ + GL P LS GQK RV A LA P +LLLDEPT LD +
Sbjct: 116 EERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMG-PEILLLDEPTAGLDPKG 173
Query: 556 IDALADAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
L + + EGG +++V+HD L+ + A+ + + ++GK+
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 2e-25
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 55/210 (26%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
V+N+S RY ++ ++ L+GPNGAGK+TL+ +I G L P G ++
Sbjct: 3 VRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK-- 58
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY---------GLTGR 512
+L DI K+ EE+++ IG Y LT R
Sbjct: 59 --------------VLGKDI------------KKEPEEVKRRIG-YLPEEPSLYENLTVR 91
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADAINDF-- 566
+ + +LS G K R+ A QA P LL+LDEPT+ LD E+ + + +
Sbjct: 92 ENL----KLSGGMKQRLALA----QALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 567 EGGLVLV-SHDFRLINQVAEEIWICENGKV 595
EG +L+ SH ++ + + I NG++
Sbjct: 144 EGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 45/197 (22%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++N+SFRY G N+ + +ALVGPNG+GKSTLL I G L P+ G +
Sbjct: 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-- 57
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521
+ DI+ L EE+R+ IG + QL
Sbjct: 58 --------------IDGKDIAKLP-----------LEELRRRIGY-----------VPQL 81
Query: 522 SDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGG--LVLVSHDF 577
S GQ+ RV A L P LLLLDEPT+ LD + + L + + + E G +++V+HD
Sbjct: 82 SGGQRQRVALARALL-LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 578 RLINQVAEEIWICENGK 594
L A+ + + ++GK
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-25
Identities = 122/563 (21%), Positives = 216/563 (38%), Gaps = 115/563 (20%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTL-LAVLG-NREVPVP 141
+++ N ++ F ++D E+ G G++G +GSGKSTL LA++G E
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE---------- 191
++ R++ L+ E + ++R +++A ++ Q+
Sbjct: 66 TSGEVILDGRDL-----LGLS---EREMRKLRGKRIA--MIF------QDPMTSLNPVMT 109
Query: 192 ---QLMDIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIALARAL 247
Q+ + S A RA +L +G E + + SGG R R+ +A AL
Sbjct: 110 IGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169
Query: 248 YVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
+KP LL+ DEPT LD LD L+ EL ++ I+H + + ++
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM---AVLFITHDLGVVAELADRVV 226
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
+ K ++ G E+L N Y + +A A G K+ R
Sbjct: 227 VMYKGEIVETG--------PTEEILSNPQHPY--TRGLLA------AVPRLGDEKIIRLP 270
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCG----KIPPPVIMVQNVSFRYSDDGPWI 416
+ ++ V + ++ + S + V V +VSF +
Sbjct: 271 RRGPLRAEPLL------SV---RNLSKRYGSRKGLFVRERGEVKAVDDVSFD-------L 314
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476
G L LVG +G+GKSTL ++ G L PS G + + +
Sbjct: 315 RE----G----ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 477 LDLDI------SPLDYMLQ---------SFPEVKDREEMRKIIGR-YGLTG-RQQVCP-- 517
+ + S L+ + E R + L G +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 518 IRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVL 572
+LS GQ+ RV A LA P LL+LDEP + LD + ++ L D + +
Sbjct: 427 PHELSGGQRQRVAIARALA-LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 573 VSHDFRLINQVAEEIWICENGKV 595
+SHD ++ +A+ + + +G++
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRI 508
|
Length = 539 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-25
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 39/204 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ V+NVSFRY P + RN+ F I+ LA++GP+G+GKSTL LI G L P+ G VR
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 460 KNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP- 517
LD DIS D E+ +G Y L ++
Sbjct: 61 -----------------LDGADISQW-----------DPNELGDHVG-Y-LPQDDELFSG 90
Query: 518 -IRQ--LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LV 571
I + LS GQ+ R+ A + P +L+LDEP +HLD+E AL AI + +
Sbjct: 91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+++H + A+ I + E+G+V
Sbjct: 151 VIAHRPETLAS-ADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 73/263 (27%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+N+SF Y G I +L F I ++GPNG+GKSTLL + G L P G
Sbjct: 1 MMLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLD---------YMLQSF----------------- 491
V L DI+ L Y+ QS
Sbjct: 59 VL----------------LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102
Query: 492 --------PEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
P +D E + + + GL R P+ +LS G++ RV+ A Q
Sbjct: 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADR----PVDELSGGERQRVLIARALAQETP 158
Query: 541 LLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
+LLLDEPT+HLD +E + L +V+V HD L + A+ + + ++G
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKG---LTVVMVLHDLNLAARYADHLILLKDG 215
Query: 594 KVTKWEGNILDYKETLRAKVLKE 616
K+ +G +E L + L+E
Sbjct: 216 KIVA-QGTP---EEVLTEENLRE 234
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 2e-23
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--M 457
+ ++N++ Y +L + L+G NGAGK+T L ++ G+L P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 458 VRKNSHLRFARY-HQHL-----HELLDLDISPLDYM-----LQSFPEVKDREEMRKIIGR 506
+ S + Q L + L +++ +++ L+ P+ + +EE+ ++
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
GLT + R LS G K ++ A P +LLLDEPT+ LD + A+ D I +
Sbjct: 121 LGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 567 EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
G ++L +H + + I I +GK+
Sbjct: 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
VI V+N++ +Y D + + F ++ L+GPNGAGK+TLL ++ G L P+ G
Sbjct: 3 EVIEVRNLTKKYGGDKTAL-DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 458 VRKNSHLRFARYHQHLHEL--------LDLDISPLDYM-----LQSFPEVKDREEMRKII 504
+ + + + L +++ + + L + + E + +++
Sbjct: 62 ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALA 560
+GL + +R LS G K R+ A A P LL+LDEPT+ LD E+ +
Sbjct: 122 ELFGLEDKANK-KVRTLSGGMKQRLSIA----LALLHDPELLILDEPTSGLDPESRREIW 176
Query: 561 DAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
+ + + EGG ++L +H ++ + + I +GK+ EG + KE K
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEKFGGK 231
|
Length = 293 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 127/567 (22%), Positives = 224/567 (39%), Gaps = 116/567 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID-I 146
+++ N + F G E+L++ + G G+LG +G+GKS L+ VL + P I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 147 FHLTR-------EMPASD-KSALTCVMEVDEERVRLEKLAEQLVACEDD----------- 187
+H+ E P+ + C ++ E V L+++L
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 188 --ESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243
L ++ + L++I A RA +++ + + + +D SGG + R+ L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH-IARDLSGGEKQRVVL 179
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVW----LEEELKTYKRILVIISHSQDFLNGVCTNI 299
AR L +P L L DEPT LD LEE +K +V+ SH + + +
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 300 IHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQ-DQIAHMKNYIARFGHGSAKLAR 358
I L+ ++K G E +E + K+ E + I ++N +++
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF-MEGVSEVEKECEVEVGEPIIKVRN-----------VSK 287
Query: 359 QAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYR 418
+ S ++ + K V+ NVS +
Sbjct: 288 RYISVDRGVVKAVD-------------------------------NVSLE-------VKE 309
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG------------MVRKNSHL-- 464
FGI VG +GAGK+TL +I G L P+ G M +
Sbjct: 310 GEIFGI--------VGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 465 RFARYHQHLHELLDL--DISPLDYMLQSFP-EVKDREEMRKIIGRYGLTG-----RQQVC 516
R RY LH+ DL + LD + ++ E+ D K + + G +++
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 517 P--IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGL 570
+LS+G++ RV A + + P +++LDEPT +D T + +I + E
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 571 VLVSHDFRLINQVAEEIWICENGKVTK 597
++VSHD + V + + +GK+ K
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVK 508
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 88 VKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ N + + G L E+ G +GLLG NG+GK+TLL +L P I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 147 F-HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
+ + PA + + V + L +L + ++ + RL +S
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPS-------LYPELTV-------RENLEFFARLYGLSK 110
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ AE R +L G + KK + SGG + R+++A AL P LL+LDEPT+ LD
Sbjct: 111 EEAEERIEELLELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 266 DACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++ + E L+ + +++ +H + +C +I L+ K+ G
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219
|
Length = 293 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 8e-21
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 300 IHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQ 359
+ L+ KL Y GNY + + + E LE Q K Y +Q +I ++ +I RF ++K A+Q
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASK-AKQ 59
Query: 360 AQSKEKTLAKM 370
AQS+ K L KM
Sbjct: 60 AQSRIKALEKM 70
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-20
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 34/222 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSFRY D P + +L I ++A+VG +G+GKSTLL L+ G P G +
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 460 KNSH------LRFARYHQ---HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ L R Q L + S + + PE D E + L
Sbjct: 532 LDGVDLNDIDLASLR-RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQ----LA 586
Query: 511 GRQQVCPIRQ---------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G + I LS GQ+ R+ A P +LLLDE T+ LD ET
Sbjct: 587 GAHEF--IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644
Query: 556 IDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ + G +++++H I A+ I + + GK+
Sbjct: 645 EAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKI 685
|
Length = 709 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 26/224 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I +NVS Y G R++ F I + L GP+GAGKSTLL LIYG+ P+ G +
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 459 R---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDREE 499
K + F R Q L D + PL + P + R
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR--VIGKPPREIRRR 117
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---I 556
+ +++ GL + + P QLS G++ RV A P +LL DEPT +LD + I
Sbjct: 118 VSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176
Query: 557 DALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
L + IN +++ +HD L+N++ + E+G++ + E
Sbjct: 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 29/216 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P P + VS Y P + R + F + R+ALVGP+GAGKSTLLNL+ G + P+
Sbjct: 318 PAPSLEFSGVSVAYPGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 456 GMVRKNS-----------HLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
G + N + A QH + + + + P+ D E+R+ +
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG---TIAENIRLARPDASD-AEIREAL 432
Query: 505 GRYGLTGRQQVCPI----------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R GL P LS GQ R+ A + LLLLDEPT HLD E
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 555 TIDALADAINDFEGG--LVLVSHDFRLINQVAEEIW 588
T + +A+ G ++LV+H L +A+ I
Sbjct: 493 TEAEVLEALRALAQGRTVLLVTHRLALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS 454
+I ++NVS Y G ++L+ +A+VGP+G+GKSTLLNL+ G P+
Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 455 VGMVR--------KNSHLRFA--RYH-----QHLHELLDLDIS-----PLDYMLQSFPEV 494
G V + R Q+ + L DL + PL +S
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
K E ++ GL R +LS GQ+ RV A P ++L DEPT +LD +
Sbjct: 119 KRAAEE--LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 555 T----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
T ++ L + + +++V+HD L A+ + ++GK+ +
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPELAKY-ADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 40/234 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V+ +S R+ G ++ + + L+GPNGAGK+TL NLI G PS
Sbjct: 1 TTPLLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS 58
Query: 456 GMVR------------KNSHLRFARYHQHLHELLDLDISPLD-------------YMLQS 490
G V + + L AR Q L + L+ +L
Sbjct: 59 GTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL--TVLENVAVGAHARLGLSGLLGR 116
Query: 491 FPEVKDREEMRK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLD 545
K+ E R+ ++ GL P LS GQ+ R+ A LA Q P LLLLD
Sbjct: 117 PRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQ-PKLLLLD 174
Query: 546 EPT---NHLDMETIDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EP N + E + L + D G ++L+ HD +L+ +A+ I + G+V
Sbjct: 175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 6e-19
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
PP I ++N+SFRY D P + +L I ALVG +GAGKSTLLNL+ G L P+
Sbjct: 317 PPIEISLENLSFRYPDGKPAL-SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375
Query: 456 GMVRKN-------------SHLRFARYHQHLHE--------LLDLDISPLDYMLQSFPEV 494
G +R N + + + +L L D S + ++ + +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS-DEEIIAALDQA 434
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
E + K G + G LS GQ R+ A LLLLDEPT HLD E
Sbjct: 435 GLLEFVPKPDGLDTVIGEGG----AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 555 TIDALADAIND-FEGGLVL-VSHDFRLINQVAEEIWICENGKV 595
T + A+ + + VL ++H A+ I + +NG++
Sbjct: 491 TEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL 532
|
Length = 559 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 47/235 (20%)
Query: 92 NFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
N S ++ L D L + G ++G NGSGKSTLL +L P + +
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD-- 61
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAE-----------QLVAC--EDDE--SQEQLM 194
D ++ L++L Q E++ E L
Sbjct: 62 ----------------GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
+ + E R L +G + ++ + SGG + R+A+A L + P +L
Sbjct: 106 --------LPEEEIEERVEEALELVGL-EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRK 306
LLDEPT LD L E LK K ++I++H D L + +I L+ K
Sbjct: 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 400 IMVQNVSFRYSDDGP--WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++N+S Y G + + I+ +A+VGP+G+GKSTLLN++ G P+ G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 458 VRKN----SHL------RFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDR 497
VR + S L F R H Q + L DL PL +L P+ + R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL--LLAGVPKKERR 118
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET-- 555
E +++ R GL R P +LS GQ+ RV A P ++L DEPT +LD ET
Sbjct: 119 ERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 556 --IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
++ L + +N G +V+V+HD L I + +GK+
Sbjct: 178 EVMELLRE-LNKEAGTTIVVVTHDPELAEYADRIIEL-RDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 68/246 (27%), Positives = 96/246 (39%), Gaps = 45/246 (18%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTRE 152
L+D LE+ G R L+G NGSGKSTLL +L + EV V D +D
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV-DGLDTSSEKSL 74
Query: 153 MPASDKSALT--------CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
+ K L V++E V L
Sbjct: 75 LELRQKVGLVFQNPDDQLFGPTVEDE-VAFGLENLGL----------------------P 111
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ E R A L +G E+ + + SGG + R+A+A L + P +LLLDEPT LD
Sbjct: 112 REEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 265 LDACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320
L E LK K ++I++H + + ++ LD K+ G E F
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF--N 228
Query: 321 RLELLE 326
ELL
Sbjct: 229 DAELLL 234
|
Length = 235 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 17/227 (7%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
++D E G GLLG NG+GK+TLL ++ +P + I +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD------------ 65
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
V + R ++ L + + + + + RL+ +S +AR A + L
Sbjct: 66 TVRDPSFVRRKIGVLFGE-RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL- 123
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--- 279
E ++ +FS G + ++A+ARAL P +L+LDEPT+ LD+ + +K K
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 280 RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
R ++ SH + +C +I L K ++ G +T L LE
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-18
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 33/205 (16%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLR----F 466
+ R L+GPNGAGK+TL NLI G L P+ G V H
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 467 ARYHQHLHELLDLDI---------SPLDYMLQSFPEVKDREEMRK----IIGRYGLTGRQ 513
R Q +L + + L ++ E R+ ++ R GL
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT---NHLDMETIDALADAINDFEGGL 570
P +LS GQ+ R+ A P LLLLDEP N + E + L + + +
Sbjct: 138 DR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITV 196
Query: 571 VLVSHDFRLINQVAEEIWICENGKV 595
+LV HD ++ +A+ + + + G+V
Sbjct: 197 LLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR--YHQH 472
++ +L F ++ L + GPNGAGK+TLL ++ G L P G V + ++ R YHQ
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 473 LHEL-----LDLDISPLDYM--LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQ 525
L L + +++ L+ + Q F + + + + + GL G + + P+ QLS GQ
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQLSAGQ 135
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
+ RV A L L +LDEP LD E + L + +GG+VL++
Sbjct: 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 39/221 (17%)
Query: 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
I P+I ++NVS R +G I +L + ++ A+VGPNGAGK+TLL+L+ G+ PS
Sbjct: 27 INEPLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84
Query: 455 VGMVRKNSHLRFAR------YHQH-------LHELLDLDISPLDYMLQSF---------- 491
G V RF + + LHE + + D +L F
Sbjct: 85 SGDVTLLGR-RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQED 143
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
+D + ++ G P LS G++ RV+ A + P LL+LDEP L
Sbjct: 144 LTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 552 DMETIDALADAINDFEGG-----LVLVSHDFRLINQVAEEI 587
D+ + L + + + L+ V+H AEEI
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTH-------HAEEI 236
|
Length = 257 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-18
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+ + N SI + G L + LE+ G G++G +GSGKSTL +L E P
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD- 202
I + P A + Q+V + S + L +
Sbjct: 64 I-LLDGKPLAPKKRAKAFYRPV--------------QMVFQDPYSSLNPRRTVGRILSEP 108
Query: 203 ---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
++ R A +L +G ++ + SGG R RIA+ARAL +P LL+LDEP
Sbjct: 109 LRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 260 TNHLD--LDACVW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
T+ LD + A + L E K + ISH + +C I +D ++
Sbjct: 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-18
Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 401 MVQ--NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
M++ NVS Y G ++ I L L GP+GAGK+TLL L+YG LTPS G V
Sbjct: 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 459 RKNSHLRFARYHQHLHELLDLDISPL--DYMLQS---------FP-EV--KDREEMRKII 504
R R LL I + D+ L P EV K E+++ +
Sbjct: 60 RIAGED-VNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 505 GR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---ID 557
G GL + P QLS G++ RV A +P LLL DEPT +LD + I
Sbjct: 119 GAALRQVGLEHKADAFPE-QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
L +N +++ +HD L+++VA + I ++G+
Sbjct: 178 DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 5e-18
Identities = 61/241 (25%), Positives = 95/241 (39%), Gaps = 72/241 (29%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI------------ 447
+ +NV+FRY DGP + R++ I +ALVGP+G+GKSTL+NLI
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 448 ----------YGDLTPSVGMVRKNSHL---------------------RFARYHQHLHEL 476
L +G+V ++ L A + HE
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 477 LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536
+ PE D +IG G+ +LS GQ+ R+ A
Sbjct: 121 IM-----------ELPEGYD-----TVIGERGV----------KLSGGQRQRIAIARALL 154
Query: 537 QAPHLLLLDEPTNHLDMETIDALADAINDF-EGGLVLV-SHDFRLINQVAEEIWICENGK 594
+ P +L+LDE T+ LD E+ + A+ + V +H I A+ I + E+GK
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGK 213
Query: 595 V 595
+
Sbjct: 214 I 214
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 7e-18
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL-- 476
++ F I + +G NGAGKST L ++ G L P+ G VR N F R ++L +
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101
Query: 477 -------LDLDISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L D+ LD + + P+ + E + + L G + P+R+LS G
Sbjct: 102 VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLG 160
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLI 580
Q+ R A P +L LDEPT LD+ + + + ++ + ++L +H F I
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI 220
Query: 581 NQVAEEIWICENGK 594
+ + + + + G+
Sbjct: 221 ATLCDRVLLIDQGQ 234
|
Length = 325 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-17
Identities = 57/228 (25%), Positives = 87/228 (38%), Gaps = 65/228 (28%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+++ N S + +L D L + G LLG +GSGKSTLL + E P I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 145 --DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL---MDIYDR 199
D+ L E+P + + V + L + + +
Sbjct: 61 GEDLTDLEDELPPLRRR-IGMVFQ-----------------------DFALFPHLTVLE- 95
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
NI GL SGG + R+ALARAL + P +LLLDEP
Sbjct: 96 --------------NIALGL--------------SGGQQQRVALARALAMDPDVLLLDEP 127
Query: 260 TNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLD 303
T+ LD + LK+ + L V+++H D + ++ L
Sbjct: 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-17
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 398 PVIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+N+S Y N+ I+ L +VG +G+GKSTL L+ G PS
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 456 GMVR-----KNSHLRF-ARYH------QH----LHELLDLDISPLDYMLQSFPEVKDREE 499
G + R A Y Q L+ + L L+ K ++
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI-LSEPLRPHGLSKSQQR 120
Query: 500 MRKIIGRYGLTGRQQVCPIR--QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM---- 553
+ +++ + GL R +LS GQ+ R+ A P LL+LDEPT+ LD+
Sbjct: 121 IAELLDQVGL--PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 554 ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
+ ++ L + + + +SHD L+ + + I + +NG++
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221
|
Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-17
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 26/199 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ + NVSF Y + + +NL + ++AL+G +G+GKSTLL L+ GDL P G +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ + +L +S L +L P + D +R +G R
Sbjct: 61 LDGV--------PVSDLEKA-LSSLISVLNQRPYLFD-TTLRNNLG-------------R 97
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDF 577
+ S G++ R+ A + Q ++LLDEPT LD T L I + + L+ ++H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHL 157
Query: 578 RLINQVAEEIWICENGKVT 596
I + ++I ENGK+
Sbjct: 158 TGIEHM-DKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-17
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 30/220 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I NV+ Y + + + I + LVGP+GAGKSTLL LIY + P+ G +R
Sbjct: 1 IEFINVTKTYPNGTAALD-GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 460 KN----SHLR-----FARYH-----QHLHELLDLDISPLDYMLQSFP----EVKDREEMR 501
N S LR + R Q L D ++ Y +F V RE +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV----YENVAFALEVTGVPPREIRK 115
Query: 502 KI---IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
++ + GL+ + + P +LS G++ RV A +P +L+ DEPT +LD +T
Sbjct: 116 RVPAALELVGLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
Query: 559 LADAINDFE--GGLVLVS-HDFRLINQVAEEIWICENGKV 595
+ + + G V+V+ H L++ + E GK+
Sbjct: 175 IMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 73/243 (30%), Positives = 100/243 (41%), Gaps = 70/243 (28%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I +N+S YS G R L G+ LD R LA++GPNGAGKSTLL + G+L+P
Sbjct: 2 IRAENLS--YSLAG----RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS 55
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISP-------LDYMLQ----SFP----EV------ 494
G V N L+ P + Q +FP EV
Sbjct: 56 GEVTLNGV--------------PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101
Query: 495 -----KDREEMRKIIGRY-------GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ----- 537
++ EE +I + GL GR R LS G++ RV A + Q
Sbjct: 102 PHRSGREPEEDERIAAQALAATDLSGLAGRD----YRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 538 -APHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
+ L LDEPT+ LD+ LA + G ++ V HD L Q A+ I + G
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217
Query: 594 KVT 596
+V
Sbjct: 218 RVI 220
|
Length = 259 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 61/201 (30%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
++ ++ VS + LE I+L +A++GP+G GKSTLL LI G
Sbjct: 1 MALLEIEGVSKSFGG-----VEVLE-DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54
Query: 453 PSVGMVR------KNSHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRK 502
P+ G V Q LL LD L L+ + + RE ++
Sbjct: 55 PTSGEVLLDGRPVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKE 113
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----METID 557
++ GL G + P QLS G + RV A LA P LLLLDEP LD E D
Sbjct: 114 LLELVGLAGFEDKYP-HQLSGGMRQRVAIARALA-TRPKLLLLDEPFGALDALTREELQD 171
Query: 558 ALADAINDFEGGLVLVSHDFR 578
L + ++LV+HD
Sbjct: 172 ELLRLWEETRKTVLLVTHDVD 192
|
Length = 248 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 23/226 (10%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+ ++NVSF Y +N + ++A++G +G+GKSTLL L+ G P
Sbjct: 333 TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392
Query: 456 GMVRKN----SHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRKIIGRY 507
G + N + L + + L + D + + P+ D EE+ + +
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD-EELWAALQQV 451
Query: 508 GLTGRQQVCPI----------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
GL + P R+LS G++ R+ A L LLDEPT LD T
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 558 ALADAI-NDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
+ + EG L++V+H R + + + I + +NGK EG
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGK-IIEEGT 555
|
Length = 573 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-16
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
++N+SF Y G I +L + +AL G NGAGK+TL ++ G + S G +
Sbjct: 2 IENISFSYKK-GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 460 -KNSHLRFARYH------QHLHELLDLDISPLDYMLQSFPEV-KDREEMRKIIGRYGLTG 511
K + R Q + L D S + +L E+ E+ ++ L
Sbjct: 61 GKPIKAK-ERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG 569
++ P LS GQK R+ A LL+ DEPT+ LD + ++ + + I + +G
Sbjct: 119 LKERHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 570 LVLV-SHDFRLINQVAEEIWICENGKVT 596
V+V +HD+ + +V + + + NG +
Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
A+ARA L +G + ++ SGG + R+A+ARAL KP LLLLDEPT
Sbjct: 63 DKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS------- 454
++ +S Y +L ++ LAL+GP+G GK+TLL LI G P
Sbjct: 3 LKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 455 -------------VGMVRKNSHLRFARY-HQHLHELLDLDISPLDYMLQSFPEVKDR-EE 499
+GMV ++ +A + H + E + L E++ R E
Sbjct: 61 GRDVTGVPPERRNIGMVFQD----YALFPHLTVAENIAF---GLKLRGVPKAEIRARVRE 113
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----ME 554
+ +++G GL R +LS GQ+ RV A LA + P LLLLDEP + LD E
Sbjct: 114 LLELVGLEGLLNR----YPHELSGGQQQRVALARALARE-PSLLLLDEPLSALDAKLREE 168
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ L + + + V+HD +A+ I + G++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-16
Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTR----E 152
E+L+ L+ N G ++G +GSGKST L + E P I + +L R +
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+ +DK+ L + R RL + + E +M+ ++ +S A RA
Sbjct: 79 LKVADKNQLRLL------RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA 132
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------L 265
L +G + Q K SGG + R+++ARAL ++P +LL DEPT+ LD L
Sbjct: 133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L EE KT +V+++H F V +++I L + K++ G + F
Sbjct: 193 RIMQQLAEEGKT----MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDIS-PL--DY 486
L L+GPNGAGKSTL+ ++ G + P G++++N LR Q L+ LD + PL +
Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY----LDTTLPLTVNR 88
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVC-----PIRQLSDGQKCRVVFAYLAWQAPHL 541
L+ P K + + + R Q P+++LS G+ RV+ A P L
Sbjct: 89 FLRLRPGTKKEDILPAL-------KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL 141
Query: 542 LLLDEPTNHLDMETIDALADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
L+LDEPT +D+ AL D I+ + + +++VSHD L+ +E+ +C N +
Sbjct: 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV-LCLNHHI 198
|
Length = 251 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-16
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 441 STLLNLIYGDLTPSVG------------MVRKNSHLRFARYHQHLHELLDLDISPLDYML 488
STLL LI G L P+ G RK R Q +L + + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTV--RENLF 58
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+ + + + R GL P+ LS GQK RV A + P LLLLDEPT
Sbjct: 59 FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPT 118
Query: 549 N 549
Sbjct: 119 A 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 4e-16
Identities = 62/207 (29%), Positives = 86/207 (41%), Gaps = 46/207 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
+ V+NVS Y G LE I L +ALVGP+G GKSTLL +I G P+
Sbjct: 1 LEVRNVSKTYGGGGGA-VTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS---FP------------EVKD---- 496
G V + + Y+ Q P E++
Sbjct: 59 GEVL----VDGEPVTGPGPDRG--------YVFQQDALLPWLTVLDNVALGLELQGVPKA 106
Query: 497 --REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDM 553
RE +++ GL+G + P QLS G + RV A LA P +LLLDEP + LD
Sbjct: 107 EARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALA-VDPDVLLLDEPFSALDA 164
Query: 554 ET----IDALADAINDFEGGLVLVSHD 576
T + L D + ++LV+HD
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-16
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHD 576
+ +LS G++ RV L P +LLLDEPTNHLD E++ L + ++ G +V V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
Query: 577 FRLINQVAEEIWICE--NGKVTKWEGNILDYKETLRAKVLKEKNKSAA 622
++ VA WI E G+ WEGN + E ++ +E+ + +A
Sbjct: 218 RYFLDNVAG--WILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESA 263
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-16
Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+K + + T+ +L D L + G YG LG NG+GK+T + ++ P I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ + + ++E L A E+ + + RL I
Sbjct: 61 GKSYQKNIEALRRIGALIEAPG-------FYPNLTAREN-------LRLLARLLGIR--- 103
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ R +L +G K+ +KK K FS G + R+ +A AL P LL+LDEPTN LD D
Sbjct: 104 -KKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 268 CVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L E L+ ++I SH + V I ++K KL G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-16
Identities = 65/195 (33%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 412 DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV----------RKN 461
GP + + L F + LAL+G NGAGKSTLL + G L P G V RK
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 462 SHLRFARYH----------QHLHELLDLDIS--PLDYMLQSFPEVKDR-EEMRKIIGRYG 508
L R Q +D D++ PL+ L S EV+ R E +G G
Sbjct: 63 --LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL-SEAEVERRVREALTAVGASG 119
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAIND 565
L R P LS G+K RV A P +LLLDEPT LD E + A+ +
Sbjct: 120 LRER----PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 566 FEGGLVLVSHDFRLI 580
+V+ +HD L
Sbjct: 176 EGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 9e-16
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------R 465
I + +E + +A+VGP+G+GKSTLL ++ G PS G VR
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 466 FARYH-----QHLHELLDLD-----ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
H Q H + +L PL+ L+ R + ++ GL R
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLE--LRGESSADSRAGAKALLEAVGLGKRLTH 142
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD---AIN-DFEGGLV 571
P QLS G++ RV A P +L DEPT +LD T D +AD A+N + LV
Sbjct: 143 YP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 572 LVSHDFRL 579
LV+HD +L
Sbjct: 202 LVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 9e-16
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 409 YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS---HLR 465
S ++ L F ++ L + GPNG GK+TLL ++ G L P G VR N +
Sbjct: 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ 67
Query: 466 FARYHQHLHELLDLD-----ISPLDYMLQSFPEVKDREEMR--KIIGRYGLTGRQQVCPI 518
H+++ L L +S L+ L + + + + GLTG + + P
Sbjct: 68 RDEPHRNILYLGHLPGLKPELSALEN-LHFWAAIHGGAQRTIEDALAAVGLTGFEDL-PA 125
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL 572
QLS GQ+ R+ A L L +LDEPT LD + LA + GG+VL
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQ 289
SGG R R+ALARAL + P LLLLDEPT+ LD + L E L+ R ++I++H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 290 DFLNGVCTNIIHLDKRK 306
+ +I L K
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-15
Identities = 67/267 (25%), Positives = 101/267 (37%), Gaps = 50/267 (18%)
Query: 68 LNAEARACTGSLAVHPKSRDVKIA----NFSITFHGCELLQDTMLELNCGRRYGLLGLNG 123
L+ +H +I +F +L+D LE+ G + ++G +G
Sbjct: 450 LDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSG 509
Query: 124 SGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA 183
SGKSTLL +L P I + D VD + L L Q+
Sbjct: 510 SGKSTLLKLLLGLYKPQQGRILL----------D--------GVDLNDIDLASLRRQVGY 551
Query: 184 CEDDESQEQLM---DIYD--RLDDISADTAEA-RAANILHGLGFTKEMQQK-------KT 230
Q+ + I + L + A E AA + F + +
Sbjct: 552 V----LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY------KRILVI 284
+ SGG R R+ALARAL KP +LLLDE T+ LD + E + R ++I
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPET----EAIILQNLLQILQGRTVII 663
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYG 311
I+H + II LD+ K+ G
Sbjct: 664 IAH-RLSTIRSADRIIVLDQGKIVEQG 689
|
Length = 709 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL- 476
+ + F I+ + +GPNGAGK+T L ++ G L P+ G VR + + R + L +
Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG 97
Query: 477 --------LDLDISPLD--YMLQSFPEVKDRE---------EMRKIIGRYGLTGRQQVCP 517
L D+ +D Y+L + ++ E+ + P
Sbjct: 98 VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL-------EELLDTP 150
Query: 518 IRQLSDGQKCRV-VFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAIN-DFEGGLVL 572
+RQLS GQ+ R + A L + P +L LDEPT LD+ E I N + ++L
Sbjct: 151 VRQLSLGQRMRAEIAAALLHE-PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 573 VSHDFRLINQVAEEIWICENGKVT 596
SH + I +A + + + G++
Sbjct: 210 TSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-15
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 412 DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR-- 468
DG ++ L F + L + GPNG+GK+TLL ++ G P G V L F R
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 469 YHQHLHELLDLD-----ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
+ L L +S L+ L+ + E++ + + R GL G + P+ QLS
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLEN-LRFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSA 128
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS--HDFRL 579
GQ+ RV A L L +LDEPT LD + A+A+ GG+V+++ D L
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL 188
Query: 580 INQVAEEI 587
A E+
Sbjct: 189 SEAGAREL 196
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-15
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 38/218 (17%)
Query: 411 DDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLLNLIYGDLTPS------------ 454
D + Y DL A+VGP+G+GKSTLLNLI G TP
Sbjct: 4 DKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63
Query: 455 --------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506
V M+ + ++L FA H + + + L +SP L+ E DR+ + + R
Sbjct: 64 AAPPADRPVSMLFQENNL-FA--HLTVEQNVGLGLSP---GLKLTAE--DRQAIEVALAR 115
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADA 562
GL G ++ P +LS G++ RV A + + +LLLDEP LD E +D + D
Sbjct: 116 VGLAGLEKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
Query: 563 INDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ + +++V+H ++A+ + +NG++ +G
Sbjct: 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA-AQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 54/243 (22%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA--RYHQHLHELLDLDISPLDY 486
R L+G NG GKST + ++ GDL PS G V + + R R Q E + + LD
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE----EFTVLDT 84
Query: 487 MLQ----------------SFPEVKDREEMR--KIIGRYG--------------LTG--- 511
++ + PE+ + + M+ + ++ L G
Sbjct: 85 VIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144
Query: 512 --RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
Q + +++ G K RV+ A + P +LLLDEPTN+LD+ TI L D +N+
Sbjct: 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNST 204
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE--TL-RAKVLKEKNKSAAVSNG 626
++++SHD +N V + + G++ + GN +Y T R ++L + N
Sbjct: 205 MIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD--------NA 256
Query: 627 KKK 629
KKK
Sbjct: 257 KKK 259
|
Length = 530 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 2e-15
Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 55/229 (24%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIF 147
++ N S+ + G +L D L + G G+LG NG+GKSTLL + G + P I +
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLD 59
Query: 148 -HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
+ + + + E + L LA++ ++ L
Sbjct: 60 GKDLASLSPKELARKIAYVPQALELLGLAHLADR---------------PFNEL------ 98
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
SGG R R+ LARAL +P +LLLDEPT+HLD+
Sbjct: 99 ---------------------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 267 ACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
+ L E L+ R V++ H + +I L ++ G
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 50/239 (20%)
Query: 398 PVIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V+N++ ++ DG + R++ F ++ L +VG +G+GKSTL + G L P
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG-LLPEG 62
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLD--------YMLQ----SFPEV--------- 494
G + + R +LL L + + Q S V
Sbjct: 63 GRITSGEVILDGR------DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116
Query: 495 -----------KDREEMRKIIGRYGL--TGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPH 540
+ R+ +++ + GL R+ P QLS G + RV+ A LA + P
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALALK-PK 174
Query: 541 LLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD+ T +D L D + ++ ++HD ++ ++A+ + + G++
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
|
Length = 539 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 2e-15
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E L+D LE+ G ++G +GSGKSTLL +LG + P + I +++ +
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING--KDLTKLSEKE 76
Query: 161 LTCVMEVDEERVRLEKLA--EQ---LVACEDDES-QEQLMDIYDRLDDISADTAEARAAN 214
L ++R +K+ Q L+ D + E + + + SA + A
Sbjct: 77 LA--------KLRRKKIGFVFQNFNLL---PDLTVLENVE-LPLLIAGKSAGRRKRAAEE 124
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDA 267
+L LG + +KK + SGG + R+A+ARAL P ++L DEPT +LD L+
Sbjct: 125 LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184
Query: 268 CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
L E K + +++++H + L +I L K+
Sbjct: 185 ---LRELNKERGKTIIMVTHDPE-LAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-15
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 32/217 (14%)
Query: 409 YSDDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--S 462
D + Y +L DL+ +A++GP+GAGKSTLLNLI G + P+ G ++ N S
Sbjct: 2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS 61
Query: 463 HLRFARY---------------HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
H A Y H + + + L + P + + +E++ +
Sbjct: 62 HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL-----NAEQQEKVVDAAQQV 116
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAI 563
G+ P QLS GQ+ RV A + +LLLDEP + LD E + +
Sbjct: 117 GIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
++ + L++V+H +A +I + GK+ K
Sbjct: 176 SERQRTLLMVTHHLSDARAIASQIAVVSQGKI-KVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I +++ + YS N+ F ++R+A++GPNGAGKSTL G L P+ G V
Sbjct: 3 LIETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 459 ---------------RKNSHLRFARYH-QHLHELLDLDIS--PLDYMLQSFPEVKDR-EE 499
RK L F Q ++ DI+ P++ L V R
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE-ETVAHRVSS 120
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
++G L R P LS G+K RV A + P +L+LDEPT LD + + L
Sbjct: 121 ALHMLGLEELRDR---VP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 560 ADAINDF--EGGLVLV--SHDFRLINQVAEEIWICENGKVT 596
D +ND G+ ++ +H L+ ++A+ I++ + G++
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
Length = 277 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 26/230 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + F L ++ L L G R ++G NG GK+TLL L E+ PD +
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG-ELE-PDSGTV- 376
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
S+ + + D D E+ L D + D
Sbjct: 377 ------KWSENANIG-YYAQDHA--------------YDFENDLTLFDWMSQWRQEGDDE 415
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
R L L F+++ +K K SGG + R+ + + KP++L++DEPTNH+D+++
Sbjct: 416 QAVRG--TLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
Query: 268 CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L L+ Y+ L+ +SH ++F++ + T II + + + G YE +
Sbjct: 474 IESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
|
Length = 530 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-15
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ ++NVS RY + ++ I+ +AL+GP+G+GKSTLL I G P G +
Sbjct: 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI- 57
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG----RYGL----TG 511
+ D++ L+ + +R+ IG + L T
Sbjct: 58 ---------------LIDGEDLTDLE---------DELPPLRRRIGMVFQDFALFPHLTV 93
Query: 512 RQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET---IDALADAINDFE 567
+ + LS GQ+ RV A LA P +LLLDEPT+ LD T + AL ++
Sbjct: 94 LENI--ALGLSGGQQQRVALARALAMD-PDVLLLDEPTSALDPITRREVRALLKSLQAQL 150
Query: 568 G-GLVLVSHDFRLINQVAEEIWICENGK 594
G +VLV+HD ++A+ + + +GK
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 52/231 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSF Y + N+ I ++A++G G+GKSTLL L+ G P+ G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQ---------------SFPEVK 495
L DI LD Y+ Q P
Sbjct: 63 ----------------LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLAD 106
Query: 496 DREEMR--KIIGRYGLTGRQ------QVCPI-RQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
D +R ++ G + Q+ R LS GQ+ V A P +LLLDE
Sbjct: 107 DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166
Query: 547 PTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
PT+ +DM + + L + + G L++++H L+ + + I + ++G++
Sbjct: 167 PTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 56/229 (24%)
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
NVSF Y N+ I ++A++G G+GKSTLL L+ G P+ G V
Sbjct: 468 NVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV----- 522
Query: 464 LRFARYHQHLHELLD-LDISPLD---------YMLQS---F------------PEVKDRE 498
LLD +DI +D Y+ Q F P D E
Sbjct: 523 ------------LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD-E 569
Query: 499 EMRKIIGRYGLTG--RQQVC----PI----RQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
E+ + G+T R+ I R LS GQ+ V A + P +LLLDEPT
Sbjct: 570 EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT 629
Query: 549 NHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ +D + + D + + G LVLV+H L++ V + I + +NG++
Sbjct: 630 SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-15
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 56/247 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI------------ 447
I +NVSF Y P + +++ F I+ ++A+VGP+G+GKSTL+ L+
Sbjct: 329 IEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 448 ----------YGDLTPSVGMVRKNSHL---------RFARYHQHLHELLD-LDISPLDYM 487
L +G+V ++ L R E+ + L ++
Sbjct: 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEF 447
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
+ + P+ D I+G G+ LS GQ+ R+ A + P +L+LDE
Sbjct: 448 IANLPDGYDT-----IVGERGVN----------LSGGQRQRLAIARALLRNPPILILDEA 492
Query: 548 TNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605
T+ LD ET + DA+ G ++++H I A+ I + +NG++ + G
Sbjct: 493 TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGT---- 546
Query: 606 KETLRAK 612
E L AK
Sbjct: 547 HEELLAK 553
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 34/218 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L + L + G + ++G GSGKSTLL +L P D DI R++ +D
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI----RQLDPAD 75
Query: 158 -KSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYDR--LDDISADTAEARA 212
+ + V + V L L + + E+++ + + D
Sbjct: 76 LRRNIGYVPQ----DVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNK------ 125
Query: 213 ANILHGLGFTKEMQ-QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
H G ++Q ++ + SGG R +ALARAL P +LLLDEPT+ +D+++ L
Sbjct: 126 ----HPNGL--DLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 272 EEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKL 307
+E L+ + L+II+H L+ + II +D ++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-15
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 32/223 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I + NV R+ + L+ I LD + +AL+GP+GAGKSTLL +I G TP
Sbjct: 3 IRINNVKKRFGA-----FGALD-DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 456 GMVR---------KNSHLR-------FARYHQHLHELLDLDIS-PLDYMLQSFPEVKDRE 498
G +R N +R F Y H + +I+ L + E + R
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----E 554
+ +++ L G P QLS GQ+ RV A P +LLLDEP LD E
Sbjct: 117 RVEELLRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
L + V V+HD ++A+ + + G++ +
Sbjct: 176 LRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
|
Length = 345 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 59/238 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
++ +N+S R R L + L R +A++GPNGAGKSTLL + G+L+P
Sbjct: 1 AMLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP 54
Query: 454 SVGMVRKN-------SHLRFARY------HQHL------HELLDLDISPLDYMLQSFPEV 494
G VR N S AR H L E++ + +P
Sbjct: 55 DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-----GLSRA 109
Query: 495 KDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFA-YLA--WQA---PHLLLLD 545
+D + + + L GR QLS G++ RV A LA W+ P LLLD
Sbjct: 110 EDDALVAAALAQVDLAHLAGR----DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 546 EPTNHLD-------METIDALADAINDFEGGLVL-VSHDFRLINQVAEEIWICENGKV 595
EPT+ LD + LA G V+ V HD L + A+ I + G++
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHE----RGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
|
Length = 258 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-15
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I V+++ FRY D G + L I ++ AL+GPNGAGKSTLL + G P G V
Sbjct: 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 459 RKNSHLRFARYHQHLHELL------------------DLDISPLDYMLQSFPEVKDR-EE 499
+ A + + + D+ P++ L EV+ R EE
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-DEVERRVEE 121
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METI 556
K + + + P LS GQK RV A + P +++LDEP +LD ET+
Sbjct: 122 ALKAVRMWDFRDK----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 557 DALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ D +++ +++ +HD L + A+++ + + G+V
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 5e-15
Identities = 66/201 (32%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G GLLG NGSGKSTLL +L P +D + D L+ R
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD-------LAGVDLHGLS-----RRARA 74
Query: 173 RLEKLAEQLVACEDDESQEQLMDI--YDRLDDIS--ADTAEARAANILHGLGFTKEMQQK 228
R L EQ D + D+ R+ S A + AA + L T E+
Sbjct: 75 RRVALVEQDS---DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART-ELSHL 130
Query: 229 KTKDF---SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRIL 282
+D SGG R R+ +ARAL +P LLLLDEPTNHLD+ A + L EL +
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 283 VIISHSQDFLNGVCTNIIHLD 303
V H + C +++ LD
Sbjct: 191 VAALHDLNLAASYCDHVVVLD 211
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-15
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P + ++++S Y P + + + R+A++GP+G+GKSTLL + G L P G
Sbjct: 333 PTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 458 VRKNSHLRFARYHQHLHELLDL--------DISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
V + + + + + D + + + + P+ D EE+ + R GL
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATD-EELWAALERVGL 450
Query: 510 TGRQQVCPI----------RQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDA 558
+ P +LS G++ R+ A L AP +LLLDEPT HLD ET D
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAP-ILLLDEPTEHLDAETADE 509
Query: 559 LADAINDFEGGL--VLVSHD 576
L + + G VL++H
Sbjct: 510 LLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 59/185 (31%), Positives = 77/185 (41%), Gaps = 28/185 (15%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+A S + L D + GR LLG NG+GKSTL ++L
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLL---------------- 47
Query: 150 TR--EMPASDKSALTCVMEVDEERVRLEKLAE-----QLVACEDDESQEQLMDIYDRLDD 202
TR S V D R LA Q + D S Q + + L
Sbjct: 48 TRLYVAQEGQIS----VAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S A AR A +L LG E K ++ +GG R R+ +ARAL +P LLLLDEPT
Sbjct: 104 LSRAEARARIAELLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162
Query: 263 LDLDA 267
LD +
Sbjct: 163 LDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-14
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR---ILVIISHS 288
SGG + R+ALA+AL P LL+LDEPT+ LD ++ E L+ K+ +++ SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 289 QDFLNGVCTNIIHLDKRKL 307
+ +C + L+ ++
Sbjct: 155 LEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-14
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
PP++ ++F ++ P ++ L+F +D L + G NGAGK+TLL ++ G L G
Sbjct: 9 PPLLAAHALAFS-RNEEP-VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66
Query: 457 MVRKNSH-------LRFARYHQHLHELLDLDISPLD--YMLQSFPEVKDREEMRKIIGRY 507
++ + RF Y HL L D+S L+ + L + ++ +
Sbjct: 67 QIQIDGKTATRGDRSRFMAYLGHLPG-LKADLSTLENLHFLCGLHGRRAKQMPGSALAIV 125
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH-LLLLDEPTNHLDMETIDAL 559
GL G + +RQLS GQK R+ A L W +P L LLDEP +LD+E I +
Sbjct: 126 GLAGYEDTL-VRQLSAGQKKRLALARL-WLSPAPLWLLDEPYANLDLEGITLV 176
|
Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 411 DDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--SHL 464
DD + Y +L DL +A++GP+GAGKSTLLNLI G TP+ G + N H
Sbjct: 5 DDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64
Query: 465 RFARY---------------HQHLHELLDLDISP---LDYMLQSFPEVKDREEMRKIIGR 506
H + + + L +SP L+ + RE++ +
Sbjct: 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN--------AEQREKVEAAAAQ 116
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADA 562
GL G + P +LS GQ+ RV A + +LLLDEP + LD E + ++
Sbjct: 117 VGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL 175
Query: 563 INDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
++ + L++V+H ++A+ + +NG++ +G
Sbjct: 176 CDERKMTLLMVTHHPEDAARIADRVVFLDNGRI-AAQG 212
|
Length = 231 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 38/202 (18%)
Query: 424 IDLDT---RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
ID D + G +GAGKSTLL I G P G + N + F + ++
Sbjct: 17 IDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK-------IN 69
Query: 481 ISPLD----YMLQS---FPEV----------------KDREEMRKIIGRYGLTGRQQVCP 517
+ P + Q FP + +DR + +++ GL
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-Y 128
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN----DFEGGLVLV 573
QLS G+K RV A P LLLLDEP + LD L + + ++ V
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 574 SHDFRLINQVAEEIWICENGKV 595
+HD +A+ I + E+G++
Sbjct: 189 THDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 38/236 (16%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
P ++ + VS + G +L F +D L+GPNGAGK+TL+++I G P G
Sbjct: 3 PIILYLDGVSVSF--GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60
Query: 457 MV--------RKNSHLRFAR------------YHQH-LHELLDLDI-------SPLDYML 488
V K R AR + + E L+L + + L L
Sbjct: 61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
++ ++R + +++ GL + LS GQK + L Q P LLLLDEP
Sbjct: 121 RA----EERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175
Query: 549 NHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602
+ + A+ + G +++V HD + ++A+++ + G V EG++
Sbjct: 176 AGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGSL 230
|
Length = 249 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK---SALTCV 164
++ G +G LG NG+GK+T + +L L R P S + V
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTT-------------LLR--PTSGTARVAGYDVV 58
Query: 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
E + R + + Q + ++D + + +++ RL + D AE RA +L E
Sbjct: 59 REPRKVRRSI-GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-E 116
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD--ACVW-LEEELKTYKRI 281
+ +SGG R R+ +A +L +P +L LDEPT LD +W LK
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 282 LVIISHSQDFLNGVCTNIIHLDKRKL 307
+++ +H + + +C I +D ++
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRI 202
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 35/234 (14%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++NVS + D G + +++ + ++G +GAGKSTL+ I G P+ G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 457 MVR---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDR 497
V LR AR QH + L + PL+ E+++R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
E+ +++ GL + P QLS GQK RV A LA P +LL DE T+ LD ET
Sbjct: 121 VLELLELV---GLEDKADAYP-AQLSGGQKQRVGIARALANN-PKVLLCDEATSALDPET 175
Query: 556 ---IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
I AL IN E GL VL++H+ ++ ++ + + + E G+V + EG + +
Sbjct: 176 TQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 45/237 (18%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDL 451
P P+I V+ V+ + D R + G+DLD LA++G +G+GKSTLL LI G L
Sbjct: 5 PEPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDI-SPLDYMLQS--------------FPEVK- 495
P G + L E +I + + Q FP +
Sbjct: 59 RPDKGEILI-----DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH 113
Query: 496 ---DREEMRKI----IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+R++ + GL G +LS G + RV A P LL LDEPT
Sbjct: 114 TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173
Query: 549 NHLD---METIDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ LD ID L +ND GL ++V+HD + +A+ + + +GKV EG
Sbjct: 174 SGLDPISAGVIDELIRELND-ALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEG 228
|
Length = 263 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 41/243 (16%)
Query: 82 HPKSRDVKIANFSITFHGC-----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136
H KS +K + G L+D E+ G R G++G NG+GKSTLL ++
Sbjct: 17 HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76
Query: 137 EVP----VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
P V + L E+ A LT E + L L ++ E E
Sbjct: 77 YKPTSGKVKVTGKVAPLI-ELGAGFDPELT-----GRENIYLRGL---ILGLTRKEIDE- 126
Query: 193 LMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
++D+I + AE LG + + K +S G R+A + A +V+P
Sbjct: 127 ------KVDEI-IEFAE---------LG---DFIDQPVKTYSSGMYARLAFSVATHVEPD 167
Query: 253 LLLLDEPTNHLD---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
+LLLDE D + C+ EL + +V++SH + C I L+ +++
Sbjct: 168 ILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227
Query: 310 YGG 312
G
Sbjct: 228 EGS 230
|
Length = 249 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGM 457
V +SFRY G R L+ + R +AL+GPNGAGKSTL +L+ G
Sbjct: 4 VAGLSFRY---GA--RRALD-DVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 458 VRKNSH-LRFARYHQHLHEL--------LDLDIS---PLDYM--LQSFPEVKDREEMRKI 503
+ H LR A L L LDLD+S L Y L + R + ++
Sbjct: 58 ISVAGHDLRRAP-RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL 116
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
+ R GL R +R+L+ G + RV A P LLLLDEPT LD + A+ +
Sbjct: 117 LARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
Query: 564 ND 565
Sbjct: 176 RA 177
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 400 IMVQNVSFRYSDDGP-WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ ++ W +++ F I R+ ++G NGAGKSTLL LI G P+ G V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 459 RKNSHLRFARYHQHLHELLDLDISPLD---------YMLQSFPEVKDREEMRKI------ 503
+ + L++L D Y+ + R+E+ +
Sbjct: 85 KVTGKVAP---------LIELGAG-FDPELTGRENIYLRGLILGLT-RKEIDEKVDEIIE 133
Query: 504 ---IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+G + P++ S G R+ F+ P +LLLDE D +
Sbjct: 134 FAELGDFIDQ------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 561 DAINDF---EGGLVLVSHDFRLINQVAEE-IWICENGKVTKWEGNILD----YKETLRAK 612
+ +N+ +VLVSHD I Q + IW+ E+G++ EG+ + Y+E L +
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL-EHGQIRM-EGSPEEVIPAYEEDLADR 245
Query: 613 VLKE 616
+
Sbjct: 246 LSLN 249
|
Length = 249 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 113 GRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTREMPA-----SDKS 159
G GLLG NG+GK+T L +L G V D D+ E SD +
Sbjct: 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV---DGFDVVKEPAEARRRLGFVSDST 87
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
L + E ++ + L + D AR + L
Sbjct: 88 GLYDRLTARE-----------------------NLEYFAGLYGLKGDELTARLEELADRL 124
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK 279
G +E+ ++ FS G R ++A+ARAL P +LLLDEPT LD+ A L E ++ +
Sbjct: 125 GM-EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 280 RI---LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ ++ +H + +C ++ L + ++ Y G
Sbjct: 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 36/193 (18%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVG-----------MVRKNSHLRFARYHQHLHELLDL 479
L+GPNG+GKSTLL L+ G L P G + R+ R A Q +
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT--AV 88
Query: 480 DISPLD-YMLQSFP--------EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKC 527
++ D L P D + + + R L+ R + LS G++
Sbjct: 89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD----MSTLSGGERQ 144
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVS-HDFRLINQ 582
RV A Q P LLLLDEPTNHLD +ET+ + + G V+ + HD L
Sbjct: 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDLNLAAS 202
Query: 583 VAEEIWICENGKV 595
+ + + + G+V
Sbjct: 203 YCDHVVVLDGGRV 215
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-14
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 31/233 (13%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + + L L L G YGLLG NG+GK+TL+ +L P I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTI--- 56
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ D + + + R R+ L Q + + + +D L I +
Sbjct: 57 ----RIDGQD-----VLKQPQKLRRRIGYLP-QEFGVYPNFTVREFLDYIAWLKGIPSKE 106
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+AR +L + + +KK SGG R R+ +A+AL P +L++DEPT LD
Sbjct: 107 VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD--- 162
Query: 268 CVWLEEELKTYKRIL--------VIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
EE ++ +L VI+S H + + +C + L+K KL + G
Sbjct: 163 ----PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 54/254 (21%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N F L D L++ G LLG +G+GKSTLL ++ E P I
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RL 61
Query: 148 HLTREMPASDKS-------------ALTCVMEVDEE-----RVRLEKLAEQLVACEDDES 189
+ S+ + AL M V + +VR E+ +E E
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA----EIRAR 117
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
E+L+ + +L+ + + SGG R R+ALARAL V
Sbjct: 118 VEELLRLV-QLEG----------------------LADRYPAQLSGGQRQRVALARALAV 154
Query: 250 KPHLLLLDEPTNHLDLDACV------WLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+P +LLLDEP LDA V WL + V ++H Q+ + ++ L+
Sbjct: 155 EPKVLLLDEPFG--ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212
Query: 304 KRKLKYYGGNYEAF 317
+ +++ G E +
Sbjct: 213 QGRIEQVGPPDEVY 226
|
Length = 345 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 6e-14
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 26/232 (11%)
Query: 88 VKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
++I N + T+ + D L + G +GLLG NG+GK+T L +L P
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGT 58
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
+ + K+A + + ++L + + + Y RL +
Sbjct: 59 AYINGYSIRTDRKAARQSLGYCPQFDALFDEL-----------TVREHLRFYARLKGLPK 107
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ +L LG T + K+ + SGG + +++LA AL P +LLLDEPT L
Sbjct: 108 SEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT--SGL 164
Query: 266 DAC----VW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
D +W + E K R +++ +HS D +C I + KL+ G
Sbjct: 165 DPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 6e-14
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 41/205 (20%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS------------------------ 454
GIDL + + ++GP+G+GKSTLL I P
Sbjct: 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77
Query: 455 VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ 514
VGMV + +L F HL L ++ ++P+ ++ + + E +++ + GL +
Sbjct: 78 VGMVFQQFNL-FP----HLTVLENITLAPI--KVKGMSKAEAEERALELLEKVGLADKAD 130
Query: 515 VCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GL 570
P QLS GQ+ RV A LA P ++L DEPT+ LD E + + D + D EG +
Sbjct: 131 AYP-AQLSGGQQQRVAIARALAMN-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 188
Query: 571 VLVSHDFRLINQVAEEIWICENGKV 595
V+V+H+ +VA+ + ++G++
Sbjct: 189 VVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 58/235 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLL--------- 444
+I ++N+S + D L+ GI L + ++GP+G+GKSTLL
Sbjct: 1 MMIEIKNLSKSFGD-----KEVLK-GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP 54
Query: 445 ---NLIYGDLTPS-----------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
++ VGMV + +L F HL L ++ ++P+
Sbjct: 55 DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL-FP----HLTVLENVTLAPV------ 103
Query: 491 FPEVK--DREEMRKI----IGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLL 543
+VK + E R+ + + GL + P QLS GQ+ RV A LA P ++L
Sbjct: 104 --KVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMD-PKVML 159
Query: 544 LDEPTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
DEPT+ LD E + + D + D EG +++V+H+ +VA+ + + GK+
Sbjct: 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKI 214
|
Length = 240 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-14
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 27/217 (12%)
Query: 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA--- 160
QD E+ G G LG NG+GKST L +L +P + + P +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK---DPFRRREEYLR 97
Query: 161 -LTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
+ VM +++L L +S E L IY+ I D R +
Sbjct: 98 SIGLVMGQ---KLQLWWDLPAL-------DSLEVLKLIYE----IPDDEFAERLDFLTEI 143
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV----WLEEE 274
L ++ K S G RMR LA AL P +L LDEPT LD++A +L+E
Sbjct: 144 LDLEGFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 275 LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ + +++ +H D + +C ++ +D+ +L + G
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239
|
Length = 325 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 9e-14
Identities = 69/232 (29%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I ++ ++ + + + G+DLD R LA++GP+G+GKSTLL LI G L P
Sbjct: 1 IELRGLTKSFGGRT--VLK----GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54
Query: 456 GMVR---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKD 496
G V + L R Q L + PL E +
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL-REHTRLSEEEI 113
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLD 552
RE + + + GL G + + P +LS G K RV A +A P LLL DEPT LD
Sbjct: 114 REIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALA----RALALDPELLLYDEPTAGLD 168
Query: 553 METIDALADAINDF--EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ D I E GL ++V+HD +A+ I + +GK+ EG
Sbjct: 169 PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDY-MLQ 489
L+GPNGAGKSTLL +I G L P+ G + + H + R + LH++ L SP Y L
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-PWTR--KDLHKIGSLIESPPLYENLT 86
Query: 490 SFPEVKDR-----------EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538
+ +K +E+ I+ TG+++ +Q S G K R+ A
Sbjct: 87 ARENLKVHTTLLGLPDSRIDEVLNIVD-LTNTGKKKA---KQFSLGMKQRLGIAIALLNH 142
Query: 539 PHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEIWICENGKV 595
P LL+LDEPTN LD I L + I F ++L SH + Q+A+ I I G +
Sbjct: 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 596 TKWEGNI 602
++G I
Sbjct: 203 -GYQGKI 208
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-K 460
V+NV+ R+ ++ F ++ L+GPNGAGK+T + +I G + P G V
Sbjct: 3 VENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 461 NSHLRFARYHQ--HLHEL--LDLDISPLDYMLQSFPEVKD------REEMRKIIGRYGLT 510
L A ++ +L E L + +D L ++K R + + + R L+
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVID-QLVYLAQLKGLKKEEARRRIDEWLERLELS 119
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG- 569
+ +LS G + +V F P LL+LDEP + LD ++ L D I +
Sbjct: 120 EYANK-RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 570 --LVLVSHDFRLINQVAEEIWICENGKV 595
++L +H L+ ++ + + + G+
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 79/244 (32%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV+F Y P + +++ F I ++A+VGP+G+GKST+L L++ S G +
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSF--------------------------PE 493
+ DI + L S P+
Sbjct: 60 IDGQ----------------DIR--EVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101
Query: 494 VKDREEMRK--------------------IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533
D EE+ + I+G GL +LS G+K RV A
Sbjct: 102 ATD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGL----------KLSGGEKQRVAIAR 150
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICE 591
+ P +LLLDE T+ LD T + A+ D G ++++H I A++I + +
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLK 209
Query: 592 NGKV 595
+G++
Sbjct: 210 DGRI 213
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 41/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I V+N+S Y + +++ I+ +AL+GP+GAGKSTLL + G + P+ G V
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 459 --------RKNSHLRFARYH-----QH-------------LHELLDLDISPLDYMLQSFP 492
K LR R Q L L S + FP
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG-RRSTWRSLFGLFP 118
Query: 493 EVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
+ ++++ + R GL + Q+ QLS GQ+ RV A Q P L+L DEP
Sbjct: 119 K-EEKQRALAALERVGLLDKAYQRA---DQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 551 LDMET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKV 595
LD + +D L IN EG V+VS H L + A+ I ++G++
Sbjct: 175 LDPASSRQVMDLLKR-INREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-13
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYR--NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ ++N++ RY +L G + L+GPNGAGK+TL+ ++ PS G
Sbjct: 1 LQLENLTKRY--GKKRALDGVSLTLGPGM---YGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 458 VRKNSHLRFARYHQHLHELL-----DLDISP-------LDYM--LQSFPEVKDREEMRKI 503
+R + + Q L + + + P LDY+ L+ P + + + ++
Sbjct: 56 IRIDGQ-DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV 114
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDAL 559
+ L R + I LS G + RV A QA P +L++DEPT LD E
Sbjct: 115 LELVNLGDRAKK-KIGSLSGGMRRRVGIA----QALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 560 ADAINDF-EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEG 600
+ +++ E +V++S H + + ++ + GK+ +EG
Sbjct: 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL-VFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-13
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I + N+S R+ NLE + + +AL+GP+G+GKSTLL +I G P G +R
Sbjct: 1 IEIANISKRFGSFQALDDVNLE--VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 460 KNS------HLR-------FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506
N H R F Y H + +I+ ++ P+ K + + +++
Sbjct: 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIA-FGLEIRKHPKAKIKARVEELLEL 117
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
L G P QLS GQ+ RV A P +LLLDEP LD + L +
Sbjct: 118 VQLEGLGDRYP-NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 567 EGGL----VLVSHDFRLINQVAEEIWICENGKV 595
+ V V+HD +VA+ I + NGK+
Sbjct: 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 66/253 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG------------ 134
+++ N ++++ +L+D L + G L+G NG+GKSTLL A+LG
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 135 NREVP----------VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184
+ V VP + R P + V +V V L + +
Sbjct: 65 GKPVRKRRKRLRIGYVPQK---SSVDRSFPIT-------VKDV----VLLGRYGK----- 105
Query: 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF---SGGWRMRI 241
+ RL+ D + A L +G M+ + + SGG + R+
Sbjct: 106 ---------KGWFRRLN--KKDKEKVDEA--LERVG----MEDLRDRQIGELSGGQKQRV 148
Query: 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK---RILVIISHSQDFLNGVCTN 298
LARAL P LLLLDEP +D+ + + LK + + +++++H +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
Query: 299 IIHLDKRKLKYYG 311
+I L R L G
Sbjct: 209 VICL-NRHLIASG 220
|
Length = 254 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-13
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG R R+ LARALY P +L+LDEP +HLD++ L + LK ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 53/272 (19%)
Query: 68 LNAEARACTGSLAVHPKSR-DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGS 124
LN+ + LA P+ R + N + E+L + L++ G G++G +GS
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 125 GKSTLLAVLGNREVPVPDH----IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
GKSTL +L + + P H +D L PA + + V+
Sbjct: 495 GKSTLTKLL--QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL--------------- 537
Query: 181 LVACEDDESQEQLM---DIYD--RLDDISADTAEARAANILHG-LGFTKEMQQ------- 227
QE ++ I D L + A A L G F E+ Q
Sbjct: 538 ---------QENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVII 285
+K + SGG R RIA+ARAL P +L+ DE T+ LD ++ + ++ R ++II
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648
Query: 286 SHSQDFLNGV--CTNIIHLDKRKLKYYGGNYE 315
+H L+ V C II L+K ++ G + E
Sbjct: 649 AHR---LSTVRACDRIIVLEKGQIAESGRHEE 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 5e-13
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 39/221 (17%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV--- 140
+++ N S++F + L D + G GL+G +GSGKSTL + P
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 141 --PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES-------QE 191
D D+ L+R + ++R +++ Q+V + S E
Sbjct: 62 IIFDGKDLLKLSRRL----------------RKIRRKEI--QMVFQDPMSSLNPRMTIGE 103
Query: 192 QLMDIYDRLDDISADTAEARAA-NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
Q+ + +S A A +L G+G +E+ + + SGG R R+A+ARAL +
Sbjct: 104 QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN 163
Query: 251 PHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISH 287
P LL+ DEPT+ LD+ + + LK L+ I+H
Sbjct: 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-13
Identities = 74/271 (27%), Positives = 109/271 (40%), Gaps = 49/271 (18%)
Query: 83 PKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
+ +++ N S T+ G + L++ L L G + +LG +GSGKSTLL +L P
Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 141 PDHI-----DIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQL 193
I +I L V+ +RV L L + L D S E+L
Sbjct: 392 QGSITLNGVEIASL----DEQALRETISVLT---QRVHLFSGTLRDNLRLANPDASDEEL 444
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
++ E+ + LG E ++ SGG R R+ALARAL L
Sbjct: 445 WAALQQVG--LEKLLESAPDGLNTWLG---EGGRR----LSGGERRRLALARALLHDAPL 495
Query: 254 LLLDEPTNHLD----LDACVWLEEELKTYKRILVIISHSQDFLNGV--CTNIIHLDKRKL 307
LLDEPT LD L E + + L++++H L G+ II LD K+
Sbjct: 496 WLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHR---LRGLERMDRIIVLDNGKI 550
Query: 308 KYYGGNYEAFCKTRLELLENQ-----MKQYN 333
G + ELL N + Q +
Sbjct: 551 IEE-GTHA-------ELLANNGRYKRLYQLD 573
|
Length = 573 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 7e-13
Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+ +++ YSD G + + I A++G NGAGKSTL + G L PS
Sbjct: 2 EDYILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 456 GMV-RKNSHLRFAR-------------YHQHLHELL------DLDISPLDYMLQSFPEVK 495
G + + ++R + ++L D+ ++ L PE +
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL---PEDE 117
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD--- 552
R+ + + R G+ + P LS GQK RV A + P +L+LDEPT LD
Sbjct: 118 VRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 553 -METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY---KET 608
E + L + + +++ +HD ++ + +++ + G+V +GN + KE
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAEKEM 235
Query: 609 LRAKVLK 615
LR L+
Sbjct: 236 LRKVNLR 242
|
Length = 283 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 7e-13
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 46/207 (22%)
Query: 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV---------------- 458
W +++ F + R+ L+G NGAGKSTLL L+ G P G V
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF 95
Query: 459 ------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R+N +L LL L + + E+ + E +G +
Sbjct: 96 NPELTGRENIYLN--------GRLLGLSR---KEIDEKIDEIIEFSE----LGDFIDL-- 138
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGG 569
P++ S G K R+ FA P +LL+DE D + + +
Sbjct: 139 ----PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVT 596
++LVSHD I ++ + + E GK+
Sbjct: 195 VILVSHDPSSIKRLCDRALVLEKGKIR 221
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 7e-13
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHLRFARYHQ 471
++ L F ++ + + GPNGAGK++LL ++ G P G V R YHQ
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQ 74
Query: 472 HLHEL-----LDLDISPLD--YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L L + +++ L+ Q D E + + + + GL G + V P+RQLS G
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQLSAG 133
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SH 575
Q+ RV A L L +LDEP +D + + L + +GG+V++ +H
Sbjct: 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-13
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI- 146
+++ + + + L D L+ G LLG +G+GKS+LL VL E+P ++I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 147 ---FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
F ++ SDK+ + R + + +Q QE L++ R+ +
Sbjct: 63 GNHFDFSKTP--SDKAIR-------DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGL 113
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKD-----FSGGWRMRIALARALYVKPHLLLLDE 258
S D A ARA +L K ++ K D SGG + R+A+ARAL ++P +LL DE
Sbjct: 114 SKDQALARAEKLL------KRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 259 PTNHLDLD---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
PT LD + V + +EL VI++H + + +++++ +
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-13
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 87 DVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
++ + N S + G L D L + G+ L+G +G+GKSTLL +L P I
Sbjct: 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 146 IFHLTREMPASDKSALTCVMEVDE----------ERVRLEKLA---EQLVACEDDESQEQ 192
+ + S ++ + V + E + L + E+++A D +
Sbjct: 380 VNGIDLR-DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438
Query: 193 LMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+ D LD + + A + SGG R+ALARAL
Sbjct: 439 FVPKPDGLDTVIGE----GGAGL------------------SGGQAQRLALARALLSPAS 476
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTY------KRILVIISHSQDFLNGVCTNIIHLDKRK 306
LLLLDEPT HLD + E+ + ++ +++I+H + I+ LD +
Sbjct: 477 LLLLDEPTAHLDAET----EQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGR 531
Query: 307 L 307
L
Sbjct: 532 L 532
|
Length = 559 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-13
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 35/226 (15%)
Query: 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+I ++NVS + G ++ I ++G +GAGKSTLL LI P+
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 456 GMVR---------KNSHLRFARYH-----QHLHEL-----LDLDISPLDYMLQSFPEVKD 496
G V + LR R QH + L + PL+ L P+ +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE--LAGVPKAEI 118
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
++ + +++ GL+ + P QLS GQK RV A LA P +LL DE T+ LD ET
Sbjct: 119 KQRVAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANN-PKILLCDEATSALDPET 176
Query: 556 ----IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
++ L D IN E GL VL++H+ ++ ++ + + + + G++
Sbjct: 177 TQSILELLKD-INR-ELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 71/246 (28%), Positives = 106/246 (43%), Gaps = 31/246 (12%)
Query: 56 EALCRKLEA-DAKLNAEARACTGSLAVHPKSRDVKIANFSITFHG-CELLQDTMLELNCG 113
A R +E DA + + AV +++ + S + G +L L+L G
Sbjct: 302 AAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPG 361
Query: 114 RRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS-DKSALTCVMEVDEERV 172
R +LG +GSGKSTLLA L + P ++ L +S D+ + + V +
Sbjct: 362 ERVAILGPSGSGKSTLLATL-AGLLD-PLQGEVT-LDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 173 RL------EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL--GFTKE 224
L E L +A D + E+L +R A+ L L G
Sbjct: 419 HLFDTTVRENL---RLARPD-ATDEELWAALER----------VGLADWLRALPDGLDTV 464
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--KTYKRIL 282
+ + + SGG R R+ALARAL +LLLDEPT HLD + L E+L R +
Sbjct: 465 LGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTV 523
Query: 283 VIISHS 288
V+I+H
Sbjct: 524 VLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 63/202 (31%), Positives = 89/202 (44%), Gaps = 55/202 (27%)
Query: 411 DDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----- 461
D W+Y +L DL R+A++GP+GAGKSTLLNLI G LTP+ G + N
Sbjct: 5 TDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64
Query: 462 -------------------SHLRFARYHQH----LHELLDLDISPLDYMLQSFPEVKDRE 498
SHL A Q+ L+ L L+ RE
Sbjct: 65 TTPPSRRPVSMLFQENNLFSHLTVA---QNIGLGLNPGLKLN-------------AAQRE 108
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----M 553
++ I + G+ P QLS GQ+ RV A L + P +LLLDEP + LD
Sbjct: 109 KLHAIARQMGIEDLLARLP-GQLSGGQRQRVALARCLVREQP-ILLLDEPFSALDPALRQ 166
Query: 554 ETIDALADAINDFEGGLVLVSH 575
E + ++ + + L++VSH
Sbjct: 167 EMLTLVSQVCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-12
Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----LRFARYHQHLHELL-DLDISP 483
L L+GPNGAGK+TLL I G + P+ G V+ R Y HE D IS
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 484 LDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534
++ P V D +R + R GLT P+ +LS GQ+ RV+ A
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLVARA 127
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHD 576
P +LLLDEP LDM T + L + + G +++ +HD
Sbjct: 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 43/238 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N FHG +L LE+ G ++G +GSGK+TLL + E P I +
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 148 HLTREMPASDKSALTCVMEVDEE-------------RVRLEKLAEQLVACEDDESQEQLM 194
+T + S + ++ + R LE + E V + + +E
Sbjct: 64 DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE--- 120
Query: 195 DIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
A ARA +L +G KE + SGG + R+A+ARAL ++P +
Sbjct: 121 -------------ATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEV 165
Query: 254 LLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
+L DEPT+ LD L+ L +E KR +VI++H F V I +D+
Sbjct: 166 ILFDEPTSALDPELVGEVLNTIRQLAQE----KRTMVIVTHEMSFARDVADRAIFMDQ 219
|
Length = 250 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 33/229 (14%)
Query: 394 KIPPP--VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451
+P P + V+NV+ R + F + LA++GP+G+GKSTL LI G
Sbjct: 309 PLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFP--------EVKDREEMRKI 503
P+ G VR L A Q E I L ++ FP + + KI
Sbjct: 369 PPTSGSVR----LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424
Query: 504 IGRYGLTGRQQVCPIR--------------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
I L G ++ +R LS GQ+ R+ A + P L++LDEP +
Sbjct: 425 IEAAKLAGVHELI-LRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483
Query: 550 HLDMETIDALADAINDFE---GGLVLVSHDFRLINQVAEEIWICENGKV 595
+LD E ALA+AI + +V+++H L+ V ++I + ++G++
Sbjct: 484 NLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-DKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 50/226 (22%)
Query: 85 SRDVKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+ ++ + S+ + G L+ + G R L+G +G+GKSTLL
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLL------------- 365
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDE----SQEQLM--- 194
+ L ++ E + + LA+ D+ Q +
Sbjct: 366 ---------------NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG 410
Query: 195 DIYD--RLDDISADTAEARAANILHGL-GFTKEMQQ-------KKTKDFSGGWRMRIALA 244
I + RL A AE R A GL F + Q + SGG R+ALA
Sbjct: 411 TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALA 470
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHS 288
RA LLLLDEPT HLD + + E L+ R +++++H
Sbjct: 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 90 IANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
I N S ++ G E+L D L+L G L G NG+GK+TL +L I + +
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLN 60
Query: 149 LTREMPASDKSALTCVM-EVD----EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
+ ++ VM +VD + VR E + L ++
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREE--------------------LLLGLKEL 100
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
A +A +L L ++++ SGG + R+A+A AL LL+ DEPT+ L
Sbjct: 101 DAG--NEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
Query: 264 DLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
D + E EL + +++I+H +FL VC ++ L +
Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHLTREMPAS 156
+L + L + G GLLG +G GKSTL +L E P + D++ L R+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANIL 216
+ + V + V Q++ E L L + +AR A +L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIG-------EPL----RHLTSLDESEQKARIAELL 134
Query: 217 HGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+G E K + SGG RI +ARAL VKP L++LDE ++LD+
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-12
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR------KNSHLRFARY--- 469
G+ L R AL+G NGAGKSTL+ ++ G P G + S R A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85
Query: 470 ---HQHLHELLDLDISP---LDYMLQSFPEVKDREEMRK----IIGRYGLTGRQQVCPIR 519
HQ L + +L ++ L + DR+ MR+ ++ R GL +
Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT-LVG 144
Query: 520 QLSDGQK-----CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLV 571
LS Q+ R L++ A +L+LDEPT L ++ + L D I +G ++
Sbjct: 145 DLSIAQRQMVEIARA----LSFDAR-VLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+SH + ++A+ I + +G+V
Sbjct: 200 YISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 39/195 (20%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARYHQHLHELLDLDISPL 484
LVGPNGAGKSTLL + G L P G ++ S AR+ +L + +P
Sbjct: 27 LVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ----QQTPP 81
Query: 485 DYM-----LQ-----SFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDG--QKCRV 529
M L + ++ GL GR + QLS G Q+ R+
Sbjct: 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR----SVNQLSGGEWQRVRL 137
Query: 530 VFAYL-AWQA--PH--LLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS-HDFRLIN 581
L W P LLLLDEP N LD+ AL +++ +G V++S HD
Sbjct: 138 AAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL 197
Query: 582 QVAEEIWICENGKVT 596
+ A+ +W+ + GK+
Sbjct: 198 RHADRVWLLKQGKLL 212
|
Length = 248 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
+GPNGAGK+T + +I G + P G + + + +Q E L + ++
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-----KSYQKNIEALRRIGALIEA--PG 82
Query: 491 F-PEVKDREEMR--------------KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
F P + RE +R +++ GL + ++ S G K R+ A
Sbjct: 83 FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALAL 141
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLINQVAEEIWICEN 592
P LL+LDEPTN LD + I L + I +G VL+ SH I +VA+ I I
Sbjct: 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201
Query: 593 GKVTKWEG 600
GK+ EG
Sbjct: 202 GKLI-EEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-12
Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
+ N S F + + L + YGLLG NG+GKSTLL ++ P I IF
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFD 60
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
D + ++E L E L A E+ + ++ L +
Sbjct: 61 -GHPWTRKDLHKIGSLIES-------PPLYENLTAREN-------LKVHTTLLGLP---- 101
Query: 209 EARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
++R +L+ L T +KK K FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 102 DSRIDEVLNIVDLTNTG---KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
Query: 267 ACVWLEEELKTYKR--ILVIIS 286
L E ++++ I VI+S
Sbjct: 159 GIQELRELIRSFPEQGITVILS 180
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 49/243 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++IAN S F + L D LE+ G LLG +GSGKSTLL ++ E P I
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RL 59
Query: 148 H---LTREMPASDKS--------ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
+ TR + A D+ AL + V + +A L
Sbjct: 60 NGQDATR-VHARDRKIGFVFQHYALFKHLTV------RDNIAFGL--------------- 97
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
+ +AR +L + + + SGG R R+ALARAL V+P +LLL
Sbjct: 98 --EIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154
Query: 257 DEPTNHLDLDACVWLEEELKTYKRIL--------VIISHSQDFLNGVCTNIIHLDKRKLK 308
DEP LD + +EL+++ R L V ++H Q+ V I+ + K++
Sbjct: 155 DEPFGALDAK----VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210
Query: 309 YYG 311
G
Sbjct: 211 QIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 41/227 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------YGDL- 451
I ++NVS Y + ++ I +++GPNGAGKSTLL+++ G++
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 452 --------TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR--EEMR 501
TPS + +K S L+ Q H L + L FP + R +E R
Sbjct: 60 IDGLELTSTPSKELAKKLSILK-----QENHINSRLTVRDL-VGFGRFPYSQGRLTKEDR 113
Query: 502 KIIGRY-------GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM- 553
+II L+ R + +LS GQ+ R A + Q +LLDEP N+LDM
Sbjct: 114 RIINEAIEYLHLEDLSDRY----LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 554 ---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
+ + L ++ +V+V HD + ++ I +NGKV K
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 45/219 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
+++ N S + G L L++ G + LLG +G GK+TLL ++ E P + D
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 143 HIDIFHLTREMPASDKS--------ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM 194
DI +L P + AL + V E +A L
Sbjct: 61 GKDITNL----PPHKRPVNTVFQNYALFPHLTV------FENIAFGL------------- 97
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
RL + + R A L + + +K SGG + R+A+ARAL +P +L
Sbjct: 98 ----RLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
LLDEP LDL ++ ELK ++ L V ++H Q
Sbjct: 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 3e-12
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 46/182 (25%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-LRFARYHQHLHELL 477
G+ L R AL+G NGAGKSTL+ ++ G P G + + + FA
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA---------- 67
Query: 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
SP R+ R I + QLS G++ V A +
Sbjct: 68 ----SP-------------RDARRAGIAM-----------VYQLSVGERQMVEIARALAR 99
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGK 594
LL+LDEPT L ++ L I +G ++ +SH + ++A+ + + +G+
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
Query: 595 VT 596
V
Sbjct: 160 VV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 41/255 (16%)
Query: 368 AKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD 427
A+ +N+ +T++ VTF S + + NVSF Y D + + L I
Sbjct: 311 ARRINE-ITEQ---KPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAG 366
Query: 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFA------RYHQH 472
++AL+G G GKSTLL L+ P G + N LR A R H
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR-QQVCPI--------RQLSD 523
L D +L + P D E + +++ + GL + + RQLS
Sbjct: 427 SATL-------RDNLLLAAPNASD-EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG 478
Query: 524 GQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLI 580
G++ R+ A L AP LLLLDEPT LD ET + + + + +++++H +
Sbjct: 479 GEQRRLGIARALLHDAP-LLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL 537
Query: 581 NQVAEEIWICENGKV 595
Q + I + +NG++
Sbjct: 538 EQF-DRICVMDNGQI 551
|
Length = 574 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 5e-12
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 36/205 (17%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRF-----AR---- 468
+ L + AL+G NGAGKSTL+ +++G P G +R +R A
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 469 --YHQHLH--------ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP- 517
HQH E + L + P L + R ++++ RYGL V P
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA--RARIKELSERYGLP----VDPD 135
Query: 518 --IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVL 572
+ LS G++ RV ++ LL+LDEPT L + D L + + EG ++
Sbjct: 136 AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF 195
Query: 573 VSHDFRLINQVAEEIWICENGKVTK 597
++H + + +A+ + + GKV
Sbjct: 196 ITHKLKEVMAIADRVTVLRRGKVVG 220
|
Length = 501 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 5e-12
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------------YGDLTPSVGMVRKNS 462
I +L I+ A++G +G+GKSTLLN+I G TP + + +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 463 HLR------FARY----HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R F + ++ + E LDL L Y + + + RE+ ++ + + GL +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDL---GLKY--KKLSKKEKREKKKEALEKVGLNLK 127
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD---AINDFEGG 569
+ I +LS G++ RV A + P L+L DEPT LD + D + D +ND
Sbjct: 128 LKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186
Query: 570 LVLVSHDFRLINQVAEEIWI 589
+++V+HD + Q I +
Sbjct: 187 IIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V ++S Y ++ I + ++GP+G GK+TLLNLI G +TPS G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 458 VRKN-------SHLRFARYHQH-LHELLDLDISPLDYMLQ--SFPEVKDREEMRKIIGRY 507
++ N R + L L++ I + + LQ + + RE +++
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 508 GL--TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD------METIDAL 559
GL + I QLS G + RV A P LLLLDEP LD M+ + L
Sbjct: 121 GLEGAEHKY---IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL--L 175
Query: 560 ADAINDFEGGLVLVSHD 576
D + ++L++HD
Sbjct: 176 LDLWQETGKQVLLITHD 192
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ +++ + Y DG + + F + +AL+GPNGAGKSTL G L P+ G V
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 459 -----------------RKNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFPEVKDRE 498
RK + F L D+ PL+ L S EV+ R
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL-SKEEVEKR- 117
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---MET 555
+++ + G+ G + P LS GQK RV A + P +++LDEPT+ LD
Sbjct: 118 -VKEALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 556 IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEG---NILDYKETLRA 611
I L +N EG +++S HD L+ A+++++ +GK+ K EG + ET+R
Sbjct: 176 IMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVFSDIETIRK 233
Query: 612 KVLK 615
L+
Sbjct: 234 ANLR 237
|
Length = 275 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 18/229 (7%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF---H 148
N S+ +G ++L D ++N G + ++G NG+GK+TLL++L P + +
Sbjct: 36 NVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF 95
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
E + + V ER R+ + +V S + + L D A
Sbjct: 96 GKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFAS---IGIYQEDLTA--EDLA 150
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA- 267
A+ L G K + + S G + R+ +ARAL P LL+LDEP LDL A
Sbjct: 151 AAQWLLELLGA---KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 268 --CVWLEEEL---KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ EEL +L + H+++ T+ + L + ++ G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCF-THRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 8e-12
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 59/235 (25%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSV 455
I +NVSFRY S I + L I +ALVG +G GKST+++L+ Y P+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTS 57
Query: 456 GMVR-KNSHLRFARYHQHLHELLDL-----------DISPLDYMLQSFPEVKDREEMRKI 503
G + +R +L L D + + + P+ D E
Sbjct: 58 GEILLDGVDIRD----LNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAA 113
Query: 504 -------------------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
+G G QLS GQK R+ A + P +LLL
Sbjct: 114 KKANIHDFIMSLPDGYDTLVGERGS----------QLSGGQKQRIAIARALLRNPKILLL 163
Query: 545 DEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL--INQVAEEIWICENGKV 595
DE T+ LD E+ + +A++ G ++++H RL I + A+ I + +NG+V
Sbjct: 164 DEATSALDAESEKLVQEALDRAMKGRTTIVIAH--RLSTI-RNADLIAVLQNGQV 215
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASDKSALTCVME 166
L + G ++G +GSGKSTLL +LG + P + ++ +++++ L
Sbjct: 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL----- 80
Query: 167 VDEERVRLEKLA-----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
R +KL L+ D + E + + + S A+ RA +L +G
Sbjct: 81 ------RNKKLGFIYQFHHLLP--DFTALENVA-MPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKTY 278
+ + + SGG R R+A+ARAL +P L+L DEPT +LD L EL
Sbjct: 132 EHRIN-HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 279 KRI-LVIISH 287
++++H
Sbjct: 191 LNTSFLVVTH 200
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 417 YRNLEFGIDLDTRL------ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470
R F +D + L AL GP+G+GK++L+N+I G P G + N +
Sbjct: 8 QRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV------ 61
Query: 471 QHLHELLD----LDISP----LDYMLQS---FPEVK------------DREEMRKIIGRY 507
L+D + + P + Y+ Q FP R + +++
Sbjct: 62 -----LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL 116
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAI 563
G+ P LS G+K RV AP LLL+DEP LD+ E + L
Sbjct: 117 GIEHLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
++ ++ VSH + ++A+ + + ENGKV
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 60/233 (25%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N +F +L+ L + G ++G +GSGKSTLL + E P I I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 148 HLTREMPASDKSALTCVMEVD---------EERVRLEKLAEQLVACEDDESQEQLMDIYD 198
L ++ K+ +V LE + +
Sbjct: 61 GL--KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI---------------- 102
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
++ +S AE RA +L +G + SGG + R+A+ARAL + P ++L DE
Sbjct: 103 KVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 259 PTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
PT+ LD LD L EE T +V+++H F V +I +D
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEEGMT----MVVVTHEMGFAREVADRVIFMDD 210
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTL---LNLI----YGDL-----------TPS---VG 456
F I LD L L+GP+GAGKS+L LNL+ G L TPS +
Sbjct: 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78
Query: 457 MVRKNSHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ 514
+R+N + F +Y+ HL +L +P + + + K++ R L
Sbjct: 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCR--VLGLSKDQALARAEKLLKRLRLKPYAD 136
Query: 515 VCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG-GL--V 571
P+ LS GQ+ RV A P +LL DEPT LD E + I + G+ V
Sbjct: 137 RYPL-HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQV 195
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+V+H+ + + A + ENG +
Sbjct: 196 IVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 54/216 (25%)
Query: 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
+P P + ++NVS + ++ I + L+GP+G GK+TLL +I G PS
Sbjct: 1 MPKPALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 455 VGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQS---FP--------------- 492
G + + + + + P+ + QS FP
Sbjct: 59 SGEILLDGEDITDVPPEK-------------RPIGMVFQSYALFPHMTVEENVAFGLKVR 105
Query: 493 ------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLL 544
E+K R EE +++G G R+ QLS GQ+ RV A L P +LLL
Sbjct: 106 KKLKKAEIKARVEEALELVGLEGFADRK----PHQLSGGQQQRVALARALV-PEPKVLLL 160
Query: 545 DEPTNHLDM----ETIDALADAINDFEGGLVLVSHD 576
DEP + LD + L + + V V+HD
Sbjct: 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
++I N + +F G + D L + G + LLG +G GKSTLL +L E P + D
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD 202
+D+ H +P R + Q A + EQ + + D
Sbjct: 80 GVDLSH----VPPYQ---------------RPINMMFQSYALFPHMTVEQNIAFGLKQDK 120
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ +R +L GL +E ++K SGG R R+ALAR+L +P LLLLDEP
Sbjct: 121 LPKAEIASRVNEML-GLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179
Query: 263 LD 264
LD
Sbjct: 180 LD 181
|
Length = 377 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I V+N+S Y +++ I+ +A++GP+GAGKSTLL + G + P+ G
Sbjct: 2 MMIEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 458 V---------RKNSHLRFAR-----YHQHLHELLDLDI------SPLDYM--LQSFPEVK 495
+ K LR R Q + + L + L Y +S +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 496 DREEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+E+ + + R G+ + LS GQ+ RV A Q P ++L DEP LD
Sbjct: 121 SKEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 553 MET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKVT 596
E+ +D L D IN +G V+V+ H L + A+ I + G++
Sbjct: 180 PESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-11
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+++ N S T+ G LL+D L +N G R GL+G NG+GKSTLL ++ P
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 52/227 (22%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L + L + G + ++G GSGKSTLL +L P D +DI R++ +D
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI----RQIDPAD 536
Query: 158 -KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE-ARAANI 215
+ + V + + R+ L + + L AD E RAA +
Sbjct: 537 LRRNIGYVPQ--DPRLFYGTLRDNIA-----------------LGAPYADDEEILRAAEL 577
Query: 216 --------LHGLGFTKEMQ-QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
H G +MQ ++ + SGG R +ALARAL P +LLLDEPT+ +D
Sbjct: 578 AGVTEFVRRHPDGL--DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 267 ACVWLEEELKTY------KRILVIISHSQDFLNGVCTNIIHLDKRKL 307
+ EE K + LV+++H L+ + II +D ++
Sbjct: 636 S----EERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 27/218 (12%)
Query: 400 IMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++ R+ D + + F + L+GPNGAGK+T L ++ G L P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP 517
+ F + L L + + RE + G YGL G +
Sbjct: 62 ATVDG---FDVVKEPAEARRRLGFVSDSTGL--YDRLTARENLEYFAGLYGLKGDELTAR 116
Query: 518 IRQLSD-----------------GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+ +L+D G + +V A P +LLLDEPT LD+ AL
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 561 DAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKV 595
+ I G +L S H + + ++ + + + G+V
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 47/212 (22%)
Query: 421 EFGIDLDTRL------ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH 474
+F +D D L A+ G +G+GK+TL+ LI G P G + N F
Sbjct: 11 DFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKG--- 67
Query: 475 ELLDLDISP----LDYMLQS---FPEVKDREEMR----------------KIIGRYG--- 508
+ + P + Y+ Q FP + R +R ++I G
Sbjct: 68 ----IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH 123
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAIN 564
L GR +LS G+K RV +P LLL+DEP LD E + L
Sbjct: 124 LLGR----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
+F ++ VSH + + ++A+ + + E+G+V
Sbjct: 180 EFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASD 157
E+L+ L + G + ++G NGSGKSTL + G+ + V + +F D
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF---------D 66
Query: 158 KSALTCVMEVDEERVRLE--------------KLAEQLVACEDDESQEQ--LMDIYDRLD 201
+ + DE R R ++ L A + + L + L
Sbjct: 67 GEDIL-ELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELK 124
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMRIALARALYVKPHLLLLDEPT 260
+ + LG +E ++ + FSGG + R + + L ++P L +LDEP
Sbjct: 125 EKAEL------------LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 261 NHLDLDACVWLEEELKTYK---RILVIISHSQDFLNGVCTNIIHL 302
+ LD+DA + E + + R ++II+H Q L+ + + +H+
Sbjct: 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-11
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+ N S F +L D L + G+ Y ++G +GSGKSTLL ++G E + +
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADT 207
S K+ + R EKL Q A ++E+ E+ +D+ + +S
Sbjct: 61 ETPPLNSKKA----------SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKE 110
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL-- 265
+ L +G + ++K + SGG + R+ALARA+ P L+L DEPT LD
Sbjct: 111 KREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 266 -DACVWLEEELKTYKRILVIISHSQ 289
D + L EL + ++I++H
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-11
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 97 FHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156
+ E ++ + G +GLLG NG+GK+T + +L L + P S
Sbjct: 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-------------LLK--PTS 54
Query: 157 DK---SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ + V E E R R+ + Q ++ +D+ + + + I+ RL + R
Sbjct: 55 GRATVAGHDVVREPREVRRRI-GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID 113
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L +G E + K +SGG R R+ +AR+L +P +L LDEPT LD
Sbjct: 114 ELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKST----LLAVLGNREVPVPDHIDIFHLTREMPASDK 158
+++ L G GL+G +GSGKST LL ++ ++ D + +L R +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVR 361
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
+ V + + Q++ E L L SA E + ++
Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIE-------EGLRVHQPTL---SAAQREQQVIAVMEE 411
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+G E + + +FSGG R RIA+ARAL +KP L++LDEPT+ LD
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-11
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 46/184 (25%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SV 455
I ++N+S + DG + ++L F I RL + GP+G GKS+L + L P +
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWPWGSGRI 58
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQ 513
GM L ++ Q P T R+
Sbjct: 59 GMPEGEDLL---------------------FLPQRPYLPLG---------------TLRE 82
Query: 514 QVC-P-IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLV 571
Q+ P LS G++ R+ FA L P + LDE T+ LD E+ D L + + ++
Sbjct: 83 QLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVI 142
Query: 572 LVSH 575
V H
Sbjct: 143 SVGH 146
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 4e-11
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 17/83 (20%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVII 285
SGG R RIA+ARAL P +L+LDE T+ LD L+A L K + +++I
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA---LRALAK--GKTVIVI 151
Query: 286 SHSQDFLNGV--CTNIIHLDKRK 306
+H L+ + II LD +
Sbjct: 152 AHR---LSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 33/247 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I +NV + YS P + N+ F ++ + +ALVG G+GKSTL+ L PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 457 MV-------------------RKNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFPEV 494
+ RK L F L E L D++ P ++ F E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED 119
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
+ +E+ K + + GL+ +LS GQ RV A + P +L LDEP LD E
Sbjct: 120 EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 555 TIDALADAINDFEGG---LVLVSHDFRLINQVAEEIWICENGKVTKWEG--NILDYKETL 609
+ D++ ++LV+H+ + + A+++ + E+GK+ K I KE L
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
Query: 610 RAKVLKE 616
+ L E
Sbjct: 240 KKHYLDE 246
|
Length = 287 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
++L D LE+N G L G +GSGK+TLL ++G + + +E+ + +
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVL--GQELYGASE-- 74
Query: 161 LTCVMEVDEERVRLEKL------AEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
+E V+L + A L+ Q+ + ++S A RA
Sbjct: 75 --------KELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARA 124
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVW 270
+L +G + + SGG + R+A+ARAL +P L+L DEPT LD D
Sbjct: 125 MLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183
Query: 271 LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
+++ + ++I++H L+ V I+H++ KL
Sbjct: 184 MQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++V FRY DGP I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 460 KNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ H LR + L E + + S D + + P + M ++I L
Sbjct: 61 VDGHDLALADPAWLR-RQVGVVLQENVLFNRSIRDNIALADPGM----SMERVIEAAKLA 115
Query: 511 GRQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
G + + + LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 558 ALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A+ ++D G +++++H + + A+ I + E G++
Sbjct: 176 AIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRI 214
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 25/206 (12%)
Query: 398 PVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ N+ RY + + N+ F I +A+VG +G+GKSTLL+L+ G TP+
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 456 GMV-----------------RKNSHLRFA-RYHQHLHELLDLDISPLDYMLQSFPEVKDR 497
G V +N L F ++H L + L+ + ++ +
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
+++ GL R P +LS G++ RV A P L+L DEPT +LD D
Sbjct: 124 SRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 558 A---LADAINDFEG-GLVLVSHDFRL 579
+ L +N +G ++V+HD +L
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQL 208
|
Length = 233 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 26/176 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-LRFARYHQHLH 474
++ L F + L L GPNG+GK+TLL LI G L P+ G ++ + + + H
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 475 ELLDLDISPLDYM---------LQSFPEVKDREEMR-----KIIGRYGLTGRQQVCPIRQ 520
L + M L+ + EE+ + +G L P
Sbjct: 77 YL-----GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL----PFGY 127
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
LS GQK RV A L + +LDEPT LD + A+ I +GG+V+ +
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 62/212 (29%), Positives = 88/212 (41%), Gaps = 52/212 (24%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFA 467
G+DL R + LVGPNGAGK+TLL I G LTP+ G V + + R A
Sbjct: 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80
Query: 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV------------ 515
Q + D+ + M R R + T R V
Sbjct: 81 SVPQDTSLSFEFDVRQVVEM--------GRTPHRSRFDTWTETDRAAVERAMERTGVAQF 132
Query: 516 --CPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD-------METIDALADAIND 565
P+ LS G++ RV+ A LA P +LLLDEPT LD +E + L D
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATP-VLLLDEPTASLDINHQVRTLELVRRLVD---- 187
Query: 566 FEGGLVLVS-HDFRLINQVAEEIWICENGKVT 596
+G + + HD L + +E+ + +G+V
Sbjct: 188 -DGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
|
Length = 402 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 5e-11
Identities = 55/219 (25%), Positives = 83/219 (37%), Gaps = 61/219 (27%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSH------ 463
FG+ L +AL+G NGAGK+TLL I G L P G +R H
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76
Query: 464 -------------------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
L Y + + L+ + + FP +K+R
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA----RLERVYELFPRLKER------- 125
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALAD 561
R+Q LS G++ + A P LLLLDEP+ L +E I
Sbjct: 126 -------RKQ--LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ D ++LV + R ++A+ ++ E G+V EG
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLERGRV-VLEG 214
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 48/241 (19%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP--------- 139
++ S F G + D LE+ G GL+G NG+GK+TL ++ P
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 140 -----VPDH-------IDIFHLTREMPASDKSALTCVMEVDEERVRLEK-LAEQLVACED 186
+P H F +TR + L V R+ L L E+
Sbjct: 66 RDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE 123
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
E++E+ ++ + + + A+ A N+ S G + R+ +ARA
Sbjct: 124 REARERARELLEFVG--LGELADRPAGNL------------------SYGQQRRLEIARA 163
Query: 247 LYVKPHLLLLDEPT---NHLDLDACVWLEEEL-KTYKRILVIISHSQDFLNGVCTNIIHL 302
L +P LLLLDEP N + + L EL +++I H + G+ I+ L
Sbjct: 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223
Query: 303 D 303
+
Sbjct: 224 N 224
|
Length = 250 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 58/223 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-------------G 134
++I S +F G E+L+D L + G +LG +G GKSTLL ++
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 135 NREV--PVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
R V P PD +F +P + L V L +L E++E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPW--LTVLDNVA-----------LGLELRGKSKAEARE- 109
Query: 193 LMDIYDRLDDISADTAEARAANILH--GL-GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
RA +L GL GF K SGG R R+A+ARAL
Sbjct: 110 ------------------RAKELLELVGLAGFED----KYPHQLSGGMRQRVAIARALAT 147
Query: 250 KPHLLLLDEPTNHLD----LDACVWLEEELKTYKRILVIISHS 288
+P LLLLDEP LD + L + ++ +++++H
Sbjct: 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 35/228 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I +QNVS+ Y P+ R L F ++L A +G G+GKST++ L+ G P+
Sbjct: 3 INLQNVSYTYQAGTPFEGRAL-FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 456 GMVR----------KNSHLRFARYH----------QHLHE--LLDLDISPLDY-MLQSFP 492
G VR KN ++ R Q E L D+ P ++ + Q
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
E RE++ + L + P +LS GQ RV A + P +L+LDEPT LD
Sbjct: 122 EALAREKLALVGISESLFEKN---PF-ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 553 METIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKVTK 597
+ L + G+ VLV+H + A+ +++ E GK+
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225
|
Length = 280 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-11
Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 55/242 (22%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL--------------AVLG 134
++ + ++++ G +L+D E+ G ++G NG+GKSTLL V G
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 135 NREVPVPDHI----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQ 190
I + R+ P S +V
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPIS---------------------VRDVV-------- 91
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFT--KEMQQKKTKDFSGGWRMRIALARALY 248
LM +Y + +A + L E+ ++ + SGG + R+ LARAL
Sbjct: 92 --LMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148
Query: 249 VKPHLLLLDEPTNHLDLDAC---VWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKR 305
P LLLLDEP +D L EL+ +++++H + ++ L++
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
Query: 306 KL 307
+
Sbjct: 209 VV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 7e-11
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 85/253 (33%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ V+N+S + G + ++ F I L LVG +G+GKSTL I G L P+ G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 457 MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY--------- 507
+ D+ L +RKI +
Sbjct: 61 SI----------------IFDGKDLLKLS------------RRLRKIRRKEIQMVFQDPM 92
Query: 508 -----GLTGRQQVC-PIR----------------------------------QLSDGQKC 527
+T +Q+ P+R +LS GQ+
Sbjct: 93 SSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152
Query: 528 RVVFAY-LAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQ 582
RV A LA P LL+ DEPT+ LD+ + +D L + L+ ++HD ++ +
Sbjct: 153 RVAIARALALN-PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211
Query: 583 VAEEIWICENGKV 595
+A+ + + GK+
Sbjct: 212 IADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ +N+ RY + + + + I +A+VG +G+GKSTLL+L+ G P+ G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 457 MVR-----------------KNSHLRFARYHQHLHELLDLDI-----SPLDYMLQSFPEV 494
V +N L F Y H H L D PL +S E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFI-YQFH-HLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
K+R +++ + GL R P +LS G++ RV A P L+L DEPT +LD
Sbjct: 119 KERAY--EMLEKVGLEHRINHRP-SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 555 TIDALADAI----NDFEGGLVLVSHDFRLI 580
+ D + + ++V+HD L
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELA 205
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 7e-11
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDI 146
+ + S ++ ++ D + G +GLLG NG+GKST+ +LG
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG------------ 52
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD-----ESQEQLMDIYDRLD 201
M + D+ +T + E R RL ++A +V D+ +E L+ ++ R
Sbjct: 53 ------MISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL-VFGRYF 105
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK--DFSGGWRMRIALARALYVKPHLLLLDEP 259
+S EA ++L F + + + SGG + R+ LARAL P LL+LDEP
Sbjct: 106 GMSTREIEAVIPSLLE---FARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162
Query: 260 TNHLDLDACVWLEEELKT 277
T LD A + E L++
Sbjct: 163 TTGLDPHARHLIWERLRS 180
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 8e-11
Identities = 65/245 (26%), Positives = 97/245 (39%), Gaps = 64/245 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-------- 139
++I N S +F E+L+ L + G ++G +GSGKSTLL L E P
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 140 ---VPDHIDIFHLTREM----------PASDKSALTCVMEVDEERVRLEKLAEQLVACED 186
V D DI L R++ P + L V +V+ AE
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFP--HLTVLENVTLA-PVKVKKLSKAE------- 112
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
A +A +L +G + SGG + R+A+ARA
Sbjct: 113 ---------------------AREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARA 150
Query: 247 LYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNI 299
L + P ++L DEPT+ LD LD L EE T ++I++H F V +
Sbjct: 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT----MIIVTHEMGFAREVADRV 206
Query: 300 IHLDK 304
I +D+
Sbjct: 207 IFMDQ 211
|
Length = 240 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-11
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 25/198 (12%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
+N+ ++ ++GP G+GKS LL I G + P G + L E
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL----LNGKDITNLPPEKR 71
Query: 478 DLDISPLDYML----------------QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521
D+ P +Y L + + + ++ +I G+ P L
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-ETL 130
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDF 577
S G++ RV A P +LLLDEP + LD+ T + L +F ++ V+HDF
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 578 RLINQVAEEIWICENGKV 595
+A+++ I NGK+
Sbjct: 191 EEAWALADKVAIMLNGKL 208
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 9e-11
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 58/236 (24%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGM 457
I +++++ Y D +++ I AL+GP+G GKSTLL L+ DL P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-- 56
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDY-----ML-QS---FP--------------EV 494
+ ++ DLD+ L+ M+ Q FP +
Sbjct: 57 -PDEGEVLLD-----GKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI 110
Query: 495 KDREEMRKII----GRYGLTGRQQVC---PIRQLSDGQKCRVVFAY-LAWQAPHLLLLDE 546
K +EE+ + + + L V LS GQ+ R+ A LA + P +LLLDE
Sbjct: 111 KLKEELDERVEEALRKAALWDE--VKDRLHALGLSGGQQQRLCLARALANE-PEVLLLDE 167
Query: 547 PTNHLDM-------ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
PT+ LD E I L +V+V+H+ + +VA+ NG++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 51/233 (21%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I V+++SFRY D + +++ F + +A+VG NG+GKSTL L+ G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE-------VKD------------RE 498
+ L E D+ M+ P+ V+D RE
Sbjct: 64 ITVG--------GMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE 115
Query: 499 EM----RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-- 552
EM + + + G+ P R LS GQK RV A + P +++LDE T+ LD
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 553 -----METIDALADAINDFEGGLVLVS--HDFRLINQVAE--EIWICENGKVT 596
+ET+ L + + G+ ++S HD +++ A+ + + G++
Sbjct: 175 GRREVLETVRQLKE-----QKGITVLSITHD---LDEAAQADRVIVMNKGEIL 219
|
Length = 279 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 53/249 (21%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-- 456
++ V +++ Y + R++ F + L+G NGAGK+TLL +I L P G
Sbjct: 1 MLEVTDLTKSYGSKVQAV-RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 457 ------MVRKNSHLR------------FAR--------YHQHLHELLDLDISPLDYMLQS 490
VR S +R +AR Y L+ L +I
Sbjct: 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK------AR 113
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E+ R ++ + + R + + S G K +V A P +L+LDEPT+
Sbjct: 114 IAELSKRLQLLEYLDRR----------VGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163
Query: 551 LDMETIDALADAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
LD+ T D I EG V+ S H + + + + + + G+V EG+I E
Sbjct: 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSI----E 218
Query: 608 TLRAKVLKE 616
L A+ +
Sbjct: 219 ALDARTVLR 227
|
Length = 245 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 26/230 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDI 146
+++ N + F L D + G +GLLG NG+GK+T + +LG + +PD ++
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG---IILPDSGEV 57
Query: 147 FHLTREMPASDKSALTCVMEVDEER--VRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
+ + + ++ + + EER K+ +QLV +L +
Sbjct: 58 LFDGKPLDIAARNRIG---YLPEERGLYPKMKVIDQLV-------------YLAQLKGLK 101
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ A R L L + E K+ ++ S G + ++ A+ P LL+LDEP + LD
Sbjct: 102 KEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 265 LDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L++ ++ R +++ +H + + +C ++ L+K + YG
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 43/209 (20%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------------KNSHL 464
GIDL+ + +A++GP+G+GK+TLL I P G +R + +
Sbjct: 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80
Query: 465 RFARYHQHLHELL-DLDISPLDYMLQSFPE----VK--DREEM----RKIIGRYGLTGRQ 513
R R QH+ + + ++ P +L++ E VK +EE R+++ + GL G++
Sbjct: 81 RQLR--QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME-------TIDALADAINDF 566
P R+LS GQ+ RV A P ++L DEPT+ LD E TI LA
Sbjct: 139 TSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE---- 193
Query: 567 EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ +V+V+H+ VA+ + G++
Sbjct: 194 KRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 393 GKIPPPV----IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
K P I V V+FRY DGP I ++ I+ +A+VGP+G+GKSTLL L+
Sbjct: 441 AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL 500
Query: 449 GDLTPSVGMV 458
G TP G V
Sbjct: 501 GFETPESGSV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 69/234 (29%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I Q V RY P+ R L + +++ +A++G G+GKSTLL + G L P+
Sbjct: 3 ITFQKVEHRYQYKTPFERRAL-YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 456 GMVR----------KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPE 493
G V KN L+ R HQ E ++ DI P+++ E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSE 118
Query: 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
+++ R++I GL +LS GQ RV A LA + P +L+LDEPT LD
Sbjct: 119 EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME-PEVLVLDEPTAGLD 177
Query: 553 -------METIDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTK 597
ME L E GL VLV+H + A++I + G V
Sbjct: 178 PKGRKEMMEMFYKLHK-----EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226
|
Length = 290 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 42/176 (23%)
Query: 108 LELNCGRRYGLLGLNGSGKSTL-LAVL-----------GNREVPVPDHIDIFHLTREM-- 153
L L G+ GL+G +GSGKSTL LA+L +++ ++ L R M
Sbjct: 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQV 367
Query: 154 ----PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE 209
P S V ++ EE +R+ + +SA +
Sbjct: 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEP------------------------KLSAAERD 403
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
R L +G + + +FSGG R RIA+ARAL +KP L+LLDEPT+ LD
Sbjct: 404 QRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459
|
Length = 534 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 36/221 (16%)
Query: 56 EALCRKLEADAKLNAEARACTGSLAVHPKSRD-----VKIANFSITFHGCELLQDTMLEL 110
E R+LE E + S A + +A S ++ ++ +
Sbjct: 8 EEAPRRLE---LSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTV 64
Query: 111 NCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169
G +GLLG NG+GKST+ +LG M + D +T +
Sbjct: 65 ASGECFGLLGPNGAGKSTIARMILG------------------MTSPDAGKITVLGVPVP 106
Query: 170 ERVRLEKLAEQLVACEDDESQE----QLMDIYDRLDDISADTAEARAANILHGLGFTKEM 225
R RL + +V D+ E + + ++ R +S EA ++L F +
Sbjct: 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE---FARLE 163
Query: 226 QQKKTK--DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ + D SGG + R+ LARAL P LL+LDEPT LD
Sbjct: 164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 37/229 (16%)
Query: 402 VQNVS--FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNL------IYGDLTP 453
V N+S + Y +D I +++ I ++ ++GP+G+GKSTLL + IY
Sbjct: 10 VFNISRLYLYINDKA-ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK 68
Query: 454 SVGMV---------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498
G V RK + F + + H + +I+ Y L+S +K++
Sbjct: 69 VDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA---YPLKSH-GIKEKR 124
Query: 499 EMRKI-------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
E++KI +G + + P QLS GQ+ R+ A P +LL+DEPT+ +
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
Query: 552 DMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598
D+ A+ I + E +V+VSH+ + + +VA+ + NG++ +W
Sbjct: 185 DIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233
|
Length = 257 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 53/233 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTL---LNLI----Y 448
I + ++ Y ++ L F I LD L L+GP+GAGKS+L LNL+
Sbjct: 3 IQLNGINCFYG-----AHQAL-FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56
Query: 449 GDL-----------TPS----------VGMVRKNSHLRFARYH--QHLHELLDLDISPLD 485
G L TPS VGMV F +Y+ HL +L +P
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRELRRNVGMV-------FQQYNLWPHLTVQQNLIEAPCR 109
Query: 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ S + R E K++ R L P+ LS GQ+ RV A P +LL D
Sbjct: 110 VLGLSKDQALARAE--KLLERLRLKPYADRFPL-HLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 546 EPTNHLDMETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKV 595
EPT LD E + I + E G+ V+V+H+ + + A + ENG +
Sbjct: 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S F ++L + L ++ G ++G +GSGKSTLL + E I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSG 56
Query: 148 HLTRE-MPASDKSALTCVMEVDEERVRLE--------KLAEQLVACEDDESQEQLMDIYD 198
L + + +D VDE +R E L L A E+ +M
Sbjct: 57 DLIVDGLKVNDPK-------VDERLIRQEAGMVFQQFYLFPHLTALEN------VMFGPL 103
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
R+ S + AE +A +L +G + + + SGG + R+A+ARAL VKP L+L DE
Sbjct: 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 259 PTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
PT+ LD L L EE T +VI++H F V + +I +DK
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMT----MVIVTHEIGFAEKVASRLIFIDK 211
|
Length = 240 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 60/236 (25%), Positives = 90/236 (38%), Gaps = 40/236 (16%)
Query: 88 VKIANFSITF----HGCELLQ---DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
+++ + S TF G L + L +N G L G +G+GKSTLL L +P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 141 PDHIDIFHL----------TREMPASDKSALTCV---MEVDEERVRLEKLAEQLVACEDD 187
I + H RE+ + + V + V LE +AE L+
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE---- 117
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
+ + A ARA +L L + + FSGG + R+ +AR
Sbjct: 118 -------------RGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGF 164
Query: 248 YVKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
+LLLDEPT LD V L E K L+ I H ++ V ++
Sbjct: 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 43/221 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N S F L D L++ G LLG +GSGK+TLL ++ E P D I
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTIL 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--------- 198
+ A+D + R Q A + M ++D
Sbjct: 61 FGGED--ATDVPV----------QERNVGFVFQHYALF------RHMTVFDNVAFGLRVK 102
Query: 199 -RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
R + A+ +L + + + SGG R R+ALARAL V+P +LLLD
Sbjct: 103 PRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL--------VIISHSQD 290
EP LDA V +EL+ + R L V ++H Q+
Sbjct: 162 EPFGA--LDAKV--RKELRRWLRRLHDELHVTTVFVTHDQE 198
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N ++ + E L++ L++ + L+G +G GKSTLL L NR + D +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NR---MNDLVPGV 57
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLD 201
+ ++ + ++V E R R+ + ++ M IYD RL
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP--------NPFPMSIYDNIAYGPRLH 109
Query: 202 DI-SADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLLLLD 257
I + L E++ + SGG + R+ +ARAL V+P +LLLD
Sbjct: 110 GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 258 EPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
EPT+ LD A +EE ELK K +VI++H+
Sbjct: 170 EPTSALDPIATGKIEELIQELKK-KYTIVIVTHN 202
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 56/234 (23%), Positives = 86/234 (36%), Gaps = 52/234 (22%)
Query: 91 ANFSITFH--------GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL------GNR 136
A+ IT G LL + E+ G R + G +G+GK++LL L G+
Sbjct: 389 ADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 137 EVPVPDHIDIFHLTRE--MPA-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193
+ +P + L + +P + + AL +L L L
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPN--AAPDFSDAELVAVLHKV-------GL 499
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
D+ +RLD+ E R +L SGG + R+A AR L KP
Sbjct: 500 GDLAERLDE------EDRWDRVL-----------------SGGEQQRLAFARLLLHKPKW 536
Query: 254 LLLDEPTNHLDLDACVWLEEELKT-YKRILVI-ISHSQDFLNGVCTNIIHLDKR 305
+ LDE T+ LD + L + LK VI + H L + + L
Sbjct: 537 VFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT-LWNFHSRQLELLDD 589
|
Length = 604 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 69/259 (26%)
Query: 89 KIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S T+ +G + L+D L +N G L+G +G+GKSTLL L N V P +
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCL-NGLVE-PTSGSVL 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
++ AL + R ++ + +Q ++ +RL +
Sbjct: 60 IDGTDINKLKGKALRQL------RRQIGMIFQQF-------------NLIERLSVL---- 96
Query: 208 AEARAANILHG-LG-----------FTKEMQQ----------------KKTKDFSGGWRM 239
N+L G LG F KE +Q ++ SGG +
Sbjct: 97 -----ENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151
Query: 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI------LVIIS-HSQDFL 292
R+A+ARAL +P L+L DEP LD + + + KRI VI+S H D
Sbjct: 152 RVAIARALMQQPKLILADEPVASLDPASS---RQVMDLLKRINREEGITVIVSLHQVDLA 208
Query: 293 NGVCTNIIHLDKRKLKYYG 311
I+ L ++ + G
Sbjct: 209 REYADRIVGLKDGRIVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV--------RKNSHLRFARYHQH--------- 472
+AL+G +G+GKSTLL ++ G S G V + + R +H
Sbjct: 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM 98
Query: 473 -LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
+ L L+ L +L+ + R + ++ + GL R P QLS G++ RV
Sbjct: 99 LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-AQLSGGEQQRVAL 157
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHDFRL 579
A P +L DEPT +LD +T D +AD + + L+LV+HD +L
Sbjct: 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 55/242 (22%)
Query: 88 VKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+ N F+G + L D L+ G LLG +G+GKS+LL VL E+P ++I
Sbjct: 5 LNGINC---FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 147 ----FHLTREMPASDKSAL----------------TCVME-VDEERVRLEKLAEQLVACE 185
F ++ L V + + E R+ L++
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD----- 116
Query: 186 DDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245
++ + + +RL A+ LH SGG + R+A+AR
Sbjct: 117 --QALARAEKLLERLR--LKPYADRFP---LH---------------LSGGQQQRVAIAR 154
Query: 246 ALYVKPHLLLLDEPTNHLDLD---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
AL ++P +LL DEPT LD + V + EL VI++H + + ++++
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214
Query: 303 DK 304
+
Sbjct: 215 EN 216
|
Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ V+N+S + D + + F + L +VG +G+GKS L I G L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPN 59
Query: 457 MVRKNSHLRFARYHQHLHELLDL-----------DIS-----PLDYM------------- 487
+ F +LL L +I+ P+ +
Sbjct: 60 ARIVGGEILF-----DGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEV 114
Query: 488 ----LQSFPEVKDREEMRKIIGRYGLTGRQQVC---PIRQLSDGQKCRVVFAYLAWQAPH 540
+ + + +E +++ G+ ++ P +LS G + RV+ A P
Sbjct: 115 LRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-ELSGGMRQRVMIAMALALNPK 173
Query: 541 LLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD+ +D L + + L+L++HD ++ ++A+ + + G++
Sbjct: 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
|
Length = 316 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD---KS 159
L+ L+ G L+G +GSGKST+ A+L N P + L +P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV----LLDGVPLVQYDHHY 552
Query: 160 ALTCVMEVDEERVRL-----EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
V V +E V E +A L D+E I A A A +
Sbjct: 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEE--------------IMAAAKAANAHD 598
Query: 215 ILHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
+ G+ E+ +K ++ SGG + RIA+ARAL KP +L+LDE T+ LD + L+
Sbjct: 599 FIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 273 EELKTYKRILVIISH 287
E R +++I+H
Sbjct: 658 ESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 46/225 (20%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD---K 158
+LQD L+ G L+G +GSGKST++A+L N P + L P S K
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV----LLDGKPISQYEHK 84
Query: 159 SALTCVMEVDEERVRL-----EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ V V +E V + +A L +C + +E AA
Sbjct: 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE--------------------AA 124
Query: 214 NILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
H F E+ +K SGG + R+A+ARAL P +L+LDE T+ LD +
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 267 ACVWLEEELKTY--KRILVIISHSQDFLNGV--CTNIIHLDKRKL 307
+ +++ L + +R +++I+H L+ V I+ LD ++
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHR---LSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 37/234 (15%)
Query: 398 PVIMVQN--VSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ ++ VSF DG +L +D ++GPNGAGK+T++++I G P
Sbjct: 1 PILYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE 56
Query: 456 GMVRKNSH-------LRFAR------------YHQH-LHELLDL----DISPLDYMLQSF 491
G V + AR + + E L+L D S +
Sbjct: 57 GSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRL 116
Query: 492 -PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E KDR + +++ GL LS GQK + L Q P LLLLDEP
Sbjct: 117 SAEEKDR--IEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173
Query: 551 LDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602
+ E + A+ + G +V+V HD + +A+++ + G V EG++
Sbjct: 174 MTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA-EGSL 226
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 5e-10
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 42/225 (18%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+ L+ L + G ++G +GSGKSTLL +LG + P ++ ++ +
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKE 75
Query: 161 LTCVMEVDEERVRLEKL--------------AEQLVACEDDESQEQLMDIYDRLDDISAD 206
L R + A + V + L +
Sbjct: 76 LA--------AFRRRHIGFVFQSFNLLPDLTALENVE------------LPLLLAGVPKK 115
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
RA +L +G + + SGG + R+A+ARAL P ++L DEPT +LD +
Sbjct: 116 ERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 267 AC--VW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
V L E K +V+++H + L II L K+
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPE-LAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 48/234 (20%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L+D LE+N G ++G +G+GKSTLL L N V P +I K
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSL-NGLVD-PTSGEI-LFNGVQITKLKGK-- 74
Query: 163 CVMEVDEERVRLEKLAEQ--LVACEDDESQEQLMDIYD-----RLDDIS----------- 204
E+ + R + + +Q LV + + + RL S
Sbjct: 75 ---ELRKLRRDIGMIFQQFNLV---------PRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
D A+A A L +G + Q+ SGG + R+A+ARAL +P ++L DEP LD
Sbjct: 123 EDKAQALDA--LERVGILDKAYQR-ASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 265 LDACVWLEEELKTYKRI-------LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++ ++ + K I +++ H D II L ++ + G
Sbjct: 180 PESA---KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I+ +NVSF+Y D + +++ F I ++VG NG+GKST+ L+ G G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 458 VRKNSH------LRFARYH----------QHLHELLDLDISPLDYMLQSF--PEVKDREE 499
+ N+ R H Q + ++ D++ + L++ P +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA---FGLENHAVPYDEMHRR 122
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ + + + + R P LS GQK RV A + P +++LDE T+ LD + L
Sbjct: 123 VSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
Query: 560 ADAIN 564
D +
Sbjct: 182 LDLVR 186
|
Length = 269 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-10
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHLRFARYHQHLHELLDLDISPL- 484
L LVGPNGAGKSTLL + G +T G ++ +H L P
Sbjct: 28 LHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86
Query: 485 ----DYMLQSFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
Y+ P+ E + + G L GR QLS G+ RV A + Q
Sbjct: 87 MPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 142
Query: 538 -------APHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEI 587
A LLLLDEP N LD+ AL ++ +V+ SHD + A
Sbjct: 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA 202
Query: 588 WICENGKV 595
W+ + GK+
Sbjct: 203 WLLKRGKL 210
|
Length = 248 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 82 HPKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+ + N S T+ L+ L++ G + LLG G GKSTLL +L R
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL-TRAW- 390
Query: 140 VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIY 197
P +I + + ++AL + V +RV L L + L+ + S E L+++
Sbjct: 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEV- 449
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKD---------FSGGWRMRIALARALY 248
L +G K ++ K + SGG + R+ +ARAL
Sbjct: 450 ------------------LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 249 VKPHLLLLDEPTNHLD 264
LLLLDEPT LD
Sbjct: 492 HDAPLLLLDEPTEGLD 507
|
Length = 574 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 42/221 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+++ + ++ + L+D L++ G L+G +G GKSTLL +L NR P
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL-NRLNDLIPGAPDE 59
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK---LAEQLVACEDDESQEQLMDIYD 198
+ + D + ++D + + L + + Q IYD
Sbjct: 60 GEVLLD-------GKD------IYDLDVDVLELRRRVGMVFQKPNPFP-------GSIYD 99
Query: 199 ------RLDDI-SADTAEARAANILHGLGFTKEMQQK-KTKDFSGGWRMRIALARALYVK 250
RL I + + R L E++ + SGG + R+ LARAL +
Sbjct: 100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159
Query: 251 PHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
P +LLLDEPT+ LD + +EE ELK I VI++H+
Sbjct: 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTI-VIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 41/206 (19%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
+ D L++ G + ++GL+GSGKSTLL + NR + P + +++ A + L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCI-NRLIE-PTSGKVLIDGQDIAAMSRKELR 97
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDD---------ISADTAEAR 211
+R +K++ Q A L+ L++ + E R
Sbjct: 98 --------ELRRKKISMVFQSFA---------LLPHRTVLENVAFGLEVQGVPRAEREER 140
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD------- 264
AA L +G + + K + SGG + R+ LARAL V P +LL+DE + LD
Sbjct: 141 AAEALELVGL-EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 265 LDACVWLEEELKTYKRILVIISHSQD 290
D + L+ EL ++ +V I+H D
Sbjct: 200 QDELLRLQAEL---QKTIVFITHDLD 222
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 7e-10
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
+L + AR +L +G + + + SGG + R+ALARAL +P LLLLDE
Sbjct: 98 KLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDE 156
Query: 259 PTNHLDLDACVWLEEELKTYKR----ILVIISHSQD 290
P + LD L EELK +R + ++H Q+
Sbjct: 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 64/267 (23%), Positives = 107/267 (40%), Gaps = 51/267 (19%)
Query: 80 AVHPKSRDVKIANFSITFHGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138
+ ++ N S ++ G + L+D + G + ++G +GSGKSTL+ +L R
Sbjct: 321 PLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLL-LRLY 379
Query: 139 PVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL--VACEDDESQE-QLMD 195
P +I + +D + L+ L +++ V SQ+ L
Sbjct: 380 D-PTSGEIL----------------IDGIDIRDISLDSLRKRIGIV------SQDPLLFS 416
Query: 196 --IYD--RLDDISADTAEA-RAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIAL 243
I + L A E A + + F + + + SGG R R+A+
Sbjct: 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIH 301
ARAL P +L+LDE T+ LD + +++ LK R +II+H + II
Sbjct: 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIV 535
Query: 302 LDKRKLKYYGGNYEAFCKTRLELLENQ 328
LD ++ G T ELL
Sbjct: 536 LDNGRIVERG--------THEELLAKG 554
|
Length = 567 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 90 IANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ S+++ G L+D L + G +LG +G GK+TLL ++ P I +
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 148 HLTREMPASD------KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
E P ++ AL + V ++ +A L +L
Sbjct: 66 GRRIEGPGAERGVVFQNEALLPWLNV------IDNVAFGL-----------------QLR 102
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
I A +L +G + + K SGG R R+ +ARAL V+P LLLLDEP
Sbjct: 103 GIEKAQRREIAHQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161
Query: 262 HLD 264
LD
Sbjct: 162 ALD 164
|
Length = 259 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ +AR L +G + +K SGG + R+ALARAL +P +LLLDEP +
Sbjct: 108 LKKAEIKARVEEALELVGL-EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166
Query: 263 LDLDACVWLEEELKTYKRIL----VIISHSQD 290
LD + +ELK +R L V ++H Q+
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQE 198
|
Length = 352 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-10
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG R RIALARALY P L++LDEP ++LD + L K +V+I+H
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
|
Length = 580 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 63/241 (26%), Positives = 95/241 (39%), Gaps = 59/241 (24%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
K P++ ++N++ + DG ++ I AL+G +G GKSTLL ++ G
Sbjct: 10 AKTRKALTPLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67
Query: 450 DLTPSVGMVRKNSHLRFARYHQHLHELLD-LDIS-------PLDYMLQS---FP------ 492
P+ G + +LD +D+S P++ M QS FP
Sbjct: 68 FEQPTAGQI-----------------MLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110
Query: 493 --------------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
E+ R EM ++ R+ QLS GQ+ RV A +
Sbjct: 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP----HQLSGGQRQRVALARSLAK 166
Query: 538 APHLLLLDEPTNHLDMETIDAL----ADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
P LLLLDEP LD + D + D + V+V+HD +A I I G
Sbjct: 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
Query: 594 K 594
K
Sbjct: 227 K 227
|
Length = 377 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
E GR G LG NG+GKST + ++ T +P S C +V
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKII----------------TGYLPPDSGSVQVCGEDVL 67
Query: 169 EERVRLEK----LAEQLVACEDDESQEQLM---DIYDRLDDISADTAEARAANILHGLGF 221
+ +++ L E D +E L IY + + R ++ +G
Sbjct: 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG----MKGQLLKQRVEEMIELVGL 123
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI 281
E Q KK S G+R R+ LA+AL P +L+LDEPT LD + V + +K +
Sbjct: 124 RPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 282 LVII--SHSQDFLNGVCTNIIHLDKRKL 307
II +H + +C +I ++K K+
Sbjct: 183 KTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 33/225 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I ++N++ Y + P+ + N+ I+ + L+G G+GKSTL+ + G L P+ G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 457 MV--------RKNSHLRFAR--------Y--HQHLHELLDLDIS--PLDYMLQSFPEVKD 496
+ K L R Y +Q E ++ DI+ P++ L S E+++
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121
Query: 497 REEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R +++ + GL + P +LS GQK RV A + P +L+LDEPT LD +
Sbjct: 122 R--VKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 555 TIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKV 595
D + + I + + ++LVSH + ++A+ I + GK
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223
|
Length = 287 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF--HLTREMPASDK 158
++L + + G ++G +GSGKSTLL +LG + P + IF ++ ++ K
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSAAK 81
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS---------ADTAE 209
+ L R + Q L+ + L++++
Sbjct: 82 AEL---------RNQKLGFIYQF---------HHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+RA +L +G + + + SGG R R+A+ARAL P L+L DEPT +LD
Sbjct: 124 SRALEMLAAVGLEHRANHRPS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
Length = 233 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SV 455
I ++N+S R D + L F + RL + G +GAGK++LL + G L P +
Sbjct: 393 ITLENLSLRTPDGQTLL-SELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRI 450
Query: 456 GMVRKNSHLRFARYHQHLHE--LLDLDISPLDYMLQSFPEVKDREEMRKI-----IGRYG 508
M +S L F +L + L + P F + + + K+ R
Sbjct: 451 SM-PADSALLFLPQRPYLPQGTLREALCYPNA--APDFSDAELVAVLHKVGLGDLAERLD 507
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND--F 566
R R LS G++ R+ FA L P + LDE T+ LD ET D L + +
Sbjct: 508 EEDRWD----RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP 563
Query: 567 EGGLVLVSH 575
+ ++ V H
Sbjct: 564 DATVISVGH 572
|
Length = 604 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 423 GIDLDTRLA----LVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARY 469
G+ R L G +GAGKSTLL LI G PS G + KN + F R
Sbjct: 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
Query: 470 H-----QHLHELLDLDIS-----PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
Q H L+D + PL S +++ R + + + GL + + PI
Sbjct: 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKNFPI- 136
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAINDFEGGLVLVSHD 576
QLS G++ RV A P +LL DEPT +LD E I L + N +++ +HD
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196
Query: 577 FRLINQVAEEIWICENGKVT 596
LI++ + + +G +
Sbjct: 197 IGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 39/230 (16%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ V+N+S Y + G +N+ I+ +A++GP+GAGKSTLL I + PS G +
Sbjct: 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 459 RKN---------SHLRFARYH-----QHLHELLDLDI------------SPLDYMLQSFP 492
LR R QH + + L + +L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 493 EVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E +D+E + R GL + Q+ QLS GQ+ RV A Q P L+L DEP
Sbjct: 120 E-EDKERALSALERVGLADKAYQRA---DQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 551 LDMET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKV 595
LD +T +D L IN +G V+++ H L + A+ I + G++
Sbjct: 176 LDPKTSKQVMDYLKR-INKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 66/228 (28%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIF 147
+I + ++ G E+L+ L + G + L+G NGSGKSTL + G+ P +
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-----PKY---- 52
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
EV E + + +DI+
Sbjct: 53 ------------------EVTEGEILFKG------------------------EDITDLP 70
Query: 208 AEARAANILHGLGFTK--EMQQKKTKDF--------SGGWRMRIALARALYVKPHLLLLD 257
E RA + L F E+ K DF SGG + R + + L ++P L +LD
Sbjct: 71 PEERARLGI-FLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILD 129
Query: 258 EPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHL 302
EP + LD+DA + E + + ++II+H Q L+ + + +H+
Sbjct: 130 EPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
+ G +GLLG NG+GK+T L +L L P D +++ E
Sbjct: 28 FHVQRGECFGLLGPNGAGKTTTLRML---------------LGLTHP--DAGSISLCGEP 70
Query: 168 DEERVRLEKLAEQLVACED----DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
R R + +V D D + + + ++ R +SA A A +L F K
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE---FAK 127
Query: 224 EMQQK---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
++ K K + SGG + R+ LARAL P +L+LDEPT LD A + E L++
Sbjct: 128 -LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
|
Length = 306 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 50/177 (28%), Positives = 67/177 (37%), Gaps = 56/177 (31%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSV--GMVR---KNSHLRFARYH-----QHLHELLDL 479
A++GP+GAGKSTLLN + G T G V + R R Q L
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL 97
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQA 538
+ RE + +R LS G++ RV A L
Sbjct: 98 TV---------------RETLMFAAK------------LRGLSGGERKRVSIALELVSN- 129
Query: 539 PHLLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSHDFRLINQVAEEIW 588
P LL LDEPT+ LD M + LAD G ++ S I+Q + EI+
Sbjct: 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLAD-----TGRTIICS-----IHQPSSEIF 176
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 21/213 (9%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASD 157
G L D L + G L G +G+GK+TLL +L P + I +
Sbjct: 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73
Query: 158 KSALTCVMEV--DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
L + V + R+ ++ + VA + + + R
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVA------------LPLEVRGKKEREIQRRVGAA 121
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW----L 271
L +G + + SGG + R+A+ARA+ P LLL DEPT +LD L
Sbjct: 122 LRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLD-PDLSERILDL 179
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
+ L +++ +H ++ V +I LD
Sbjct: 180 LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 27/172 (15%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+ L + G ++G +GSGKSTLLAVL + P + + L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLL----------GQPL 74
Query: 162 TCVMEVDEERVRLEK---------LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+ E +R L L A E+ +L S+ + A A
Sbjct: 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL-------RGESSADSRAGA 127
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L +G K + SGG + R+ALARA +P +L DEPT +LD
Sbjct: 128 KALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL-- 174
G+ G +G+GKSTLL + E P I + S + + ++ L
Sbjct: 27 GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL-----FDSRKKINLPPQQRKIGLVF 81
Query: 175 ------------EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
E LA L + E + + ++ D L GL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-----------------GLD-- 122
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL 282
+ + SGG + R+ALARAL +P LLLLDEP + LD + L ELK K+ L
Sbjct: 123 -HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181
Query: 283 ----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ ++H + I+ ++ +L+Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 34/218 (15%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--LRFARYHQHLHEL 476
G++ R +GPNGAGK+T + ++ L P+ G R + +R R ++
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR------KV 64
Query: 477 ------------LDLDISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+D D++ + + L P+ + E +++ + L P+
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-PVG 123
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHD 576
S G + R+ A P +L LDEPT LD T A+ D I EG +L+ +H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 577 FRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVL 614
+++ + I I ++G++ EG + K L L
Sbjct: 184 MEEADKLCDRIAIIDHGRIIA-EGTPEELKRRLGKDTL 220
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 42/211 (19%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFA 467
G+ L ++++G +G+GKST L I PS G +R K+ L+ A
Sbjct: 24 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83
Query: 468 RYHQ-------------------HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508
Q H+ L ++ +P+ + S E +R E K + + G
Sbjct: 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE--KYLAKVG 141
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
+ + P LS GQ+ RV A LA + P ++L DEPT+ LD E + + + D
Sbjct: 142 IAEKADAYPA-HLSGGQQQRVAIARALAME-PEVMLFDEPTSALDPELVGEVLKVMQDLA 199
Query: 567 -EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EG +V+V+H+ V+ + GK+
Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230
|
Length = 256 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+K+ N S + ++L+ +E+ + ++G +G GKST L L NR EV V
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVE 66
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--- 198
++ F+ + E RV L +L Q V+ + M +YD
Sbjct: 67 GRVEFFN----------------QNIYERRVNLNRLRRQ-VSMVHPKPNLFPMSVYDNVA 109
Query: 199 ------------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
+DDI + + A++ + K K D SGG + R+ +ARA
Sbjct: 110 YGVKIVGWRPKLEIDDIVE--SALKDADLWDEI---KHKIHKSALDLSGGQQQRLCIARA 164
Query: 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIISHS 288
L VKP +LL+DEP LD A + +E +++ + +VI+SH+
Sbjct: 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
|
Length = 261 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 54/224 (24%)
Query: 383 KTVTFTFPSCGKIPPPVIM--VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGK 440
K + FP + V VSF I +T L LVG +G GK
Sbjct: 8 KNLKKYFPVGKGFGKKRYVKAVDGVSFS-------IKEG-------ET-LGLVGESGCGK 52
Query: 441 STLLNLIYGDLTPSVGMV----RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKD 496
STL LI G P+ G + + + L + + ELL+ + + L +P
Sbjct: 53 STLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-KVGLPEEFLYRYP---- 107
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
+LS GQ+ R+ A LA P L++ DEP + LD+
Sbjct: 108 ----------------------HELSGGQRQRIGIARALALN-PKLIVADEPVSALDVSV 144
Query: 556 ----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
++ L D + + +SHD ++ +++ I + GK+
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188
|
Length = 268 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +NV+FRY ++ I+ +ALVG +G+GKSTL+NLI P G +
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 460 KNSH------LRFARYH-----QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508
+ H L R Q + L + I+ + + E DR E+ + +
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVV-LFNDTIA--NNIAYGRTEQADRAEIERALAAAY 447
Query: 509 LT--------GRQQVCPIRQ----LSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
G PI + LS GQ+ R+ A L AP +L+LDE T+ LD E+
Sbjct: 448 AQDFVDKLPLGLDT--PIGENGVLLSGGQRQRLAIARALLKDAP-ILILDEATSALDNES 504
Query: 556 ---IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ A + + LV ++H I + A+ I + ++G++
Sbjct: 505 ERLVQAALERLMQGRTTLV-IAHRLSTI-EKADRIVVMDDGRI 545
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 41/230 (17%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS 454
+I + V++ Y + P+ R L F IDL+ + AL+G G+GKSTLL + G L P+
Sbjct: 1 MIKFEKVNYTYQPNSPFASRAL-FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 455 VGMVR-------------------KNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFP 492
G V K + F L E L D+ P ++ +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP--- 116
Query: 493 EVKDREEMRKIIGR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+E+ KI GL +LS GQ RV A + P +L+LDEPT
Sbjct: 117 ----KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 549 NHLDMET---IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LD + + L ++I+ +VLV+H + A+ +++ E G +
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222
|
Length = 288 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
+ ++ Y G ++ ++ L ++GP+G GK+TLLNLI G + G +
Sbjct: 4 ISHLYADY--GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 460 ----KNSHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ Q+ LL D L +++ E +++ + GL G
Sbjct: 62 GKPVEGPGAERGVVFQN-EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
++ I QLS GQ+ RV A P LLLLDEP LD T
Sbjct: 121 AEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
|
Length = 255 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 88 VKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP---- 139
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 140 -VPDHIDIFHLTREMPASDKSALTCVME---VDEERVRLEKLAEQLVACEDDESQEQLMD 195
+ D D+ L+ + + + + + R +A L
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-------------- 107
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
LD+ D + + +L +G + + SGG + R+A+ARAL P +LL
Sbjct: 108 ---ELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
DE T+ LD + E LK R L ++I+H D + +C + + +L G
Sbjct: 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
Query: 312 GNYEAFCKTRLEL 324
E F + L
Sbjct: 224 TVSEIFSHPKTPL 236
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 37/194 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S + G LL L+L G +LG NG+GKSTLL L P + +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 148 -HLTREMPASDKSALTCVMEVD---------EERVRLEKLAEQLVACEDDESQEQLMDIY 197
P + + V+ + +E V++ ++ + + E E++
Sbjct: 62 GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR--EPEEDERI---- 115
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL------YVKP 251
A+A AA L GL + + SGG + R+ LAR L
Sbjct: 116 ---------AAQALAATDLSGL------AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160
Query: 252 HLLLLDEPTNHLDL 265
L LDEPT+ LD+
Sbjct: 161 RWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-09
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 199 RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
L + A RA +L GL + SGG R R+ALARAL V P +LLL
Sbjct: 99 ELQGVPKAEARERAEELLELVGL---SGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155
Query: 257 DEPTNHLD 264
DEP + LD
Sbjct: 156 DEPFSALD 163
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 55/180 (30%), Positives = 74/180 (41%), Gaps = 38/180 (21%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I + VS Y D + +L F I L+GPNGAGKST+ ++ G ++P G
Sbjct: 2 NVAIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59
Query: 457 MV-----RKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRY-GL 509
+ S R AR + D LD PE RE + + GRY G+
Sbjct: 60 KITVLGEPVPSRARLARVAIGVVPQFDNLD-----------PEFTVRENLL-VFGRYFGM 107
Query: 510 TGR--QQVCP---------------IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ R + V P + LS G K R+ A P LL+LDEPT LD
Sbjct: 108 STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 39/224 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I V+NVS R+ D + L+ + LD +AL+GP+G+GK+TLL LI G P
Sbjct: 3 IEVRNVSKRFGD-----FVALD-DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56
Query: 456 GMV-------------RKNSHLRFARY--HQHLHELLD-----LDISPLDYMLQSFPEVK 495
G + +N F Y +H+ + D L + P + PE +
Sbjct: 57 GTILFGGEDATDVPVQERNVGFVFQHYALFRHM-TVFDNVAFGLRVKPRS---ERPPEAE 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R ++ +++ L P QLS GQ+ RV A P +LLLDEP LD +
Sbjct: 113 IRAKVHELLKLVQLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 556 IDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
L + L V V+HD +VA+ + + G++
Sbjct: 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE-- 273
L +G KE + K+ SGG R+++AR L P +LLLDEPT+ LD + +EE
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 274 -ELKTYKRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+LK + VI I+H+ + + L+K L Y Y+ F
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220
|
Length = 241 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 52/197 (26%), Positives = 77/197 (39%), Gaps = 26/197 (13%)
Query: 79 LAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138
L V S S +L + L L G LLG +G GKSTL +L E
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 139 PVPDHI-----DIFHLTREMPASDKSALTCVME-----VDEERVRLEKLAEQLVACEDDE 188
P ++ + L R + + + V + V+ + E + E L
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL------- 116
Query: 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248
L + ARA+ +L + + K+ SGG R+ LARAL
Sbjct: 117 ---------RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA 167
Query: 249 VKPHLLLLDEPTNHLDL 265
V+P LL+LDE ++LDL
Sbjct: 168 VEPKLLILDEAVSNLDL 184
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 33/215 (15%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
++L + L + G + G +G GKSTLL ++ + P L E D
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----TSGTLLFE--GEDV 67
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD---DISAD-TAEARAAN 214
S L + + R ++ A+ D + D L I A A +
Sbjct: 68 STL----KPEAYRQQVSYCAQTPALFGDT--------VEDNLIFPWQIRNRRPDRAAALD 115
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE 274
+L + K + SGG + RIAL R L P +LLLDE T+ LD +EE
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 275 LKTY----KRILVIISHSQDFLNGVCTNIIHLDKR 305
+ Y ++ I+H +D I H DK
Sbjct: 176 IHRYVREQNVAVLWITHDKD------QAIRHADKV 204
|
Length = 223 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 66/235 (28%), Positives = 94/235 (40%), Gaps = 42/235 (17%)
Query: 90 IANFSITF-----HGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142
++N S TF G L L++ L +N G L G +GSGKSTLL L +P
Sbjct: 7 VSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEG 66
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEE-------------RVR-LEKLAEQLVACEDDE 188
I + H + V+EV RV L+ +AE L+A
Sbjct: 67 QILVRHEGEWVDLVTAEPRE-VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA----- 120
Query: 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248
+ + A A+AA++L L + + FSGG + R+ +AR
Sbjct: 121 ------------RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI 168
Query: 249 VKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
V +LLLDEPT LD V L E K LV I H ++ V ++
Sbjct: 169 VDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I +NV+F Y D+ + +++ F I +A+VGP GAGK+TL+NL+ P G +
Sbjct: 3 IEFENVNFSY-DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 459 ---RKNSHLRFARYHQH----LHELLDLDISPLDYMLQSFPEVKDREEMR--KIIGRYGL 509
+ L + + ++ + P D E + K G +
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF 121
Query: 510 TGRQQVCPIRQ---------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
I + LS G++ + A + P +L+LDE T+++D E
Sbjct: 122 --------IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
Query: 555 TIDALADAINDFEGG--LVLVSHDFRL-INQVAEEIWICENGKVTKWEGN 601
T + +A+ G ++++H RL + A++I + ++GK+ + EG
Sbjct: 174 TEKLIQEALEKLMKGRTSIIIAH--RLSTIKNADKILVLDDGKIIE-EGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLR-----FARYHQHLHELLD 478
L+GP+G GK+TLL L+ G P G + + HLR F Y H ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 479 LDIS-PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+++ L ++ P + + + + + L P QLS GQ+ RV A
Sbjct: 61 ENVAFGLK--MRKVPRAEIKPRVLEALRLVQLEEFADRKPH-QLSGGQQQRVALARALVF 117
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENG 593
P +LLLDEP + LD + D + + + L V V+HD +++ I I G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 594 KV 595
K+
Sbjct: 178 KI 179
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 98 HGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156
G + + D L++ G + ++GL+GSGKSTL+ +L NR + P +I +++
Sbjct: 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLL-NRLIE-PTRGEILVDGKDIAKL 95
Query: 157 DKSALTCVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
+ L +R +K++ Q A + + + + + E RA
Sbjct: 96 SAAEL--------RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALE 147
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE 274
L +G + K + SGG + R+ LARAL P +LL+DE + LD +++E
Sbjct: 148 ALELVGL-EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206
Query: 275 L----KTYKRILVIISHSQD 290
L K+ +V I+H D
Sbjct: 207 LLELQAKLKKTIVFITHDLD 226
|
Length = 386 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 50/233 (21%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLI------- 447
VI ++N++ Y + + + F I+L+ + L GP+G+GK+TLL LI
Sbjct: 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58
Query: 448 YGDLT-----------PSVGMVRKN------SH--LRFARYHQHLHELLDL--DISPLDY 486
G L + +R+N +H L F Q++ L+L ++S +
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE- 117
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
RE R ++ GL P LS GQK RV A P L+L DE
Sbjct: 118 ---------ARERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 547 PTNHLDMETIDALADAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
PT LD ++ + + + E G +++V+HD R+++ VA+ I E+GK+
Sbjct: 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 41/223 (18%)
Query: 403 QNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
QNV+F Y D + +++ F + ALVGP+G+GKST++ L+ P G V
Sbjct: 15 QNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73
Query: 461 NSHLRFARYHQHLHELLDL--------------DISPLDYMLQSFPEVKDRE-------- 498
+ H++LH + L +I+ Y LQS +E
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA---YGLQSCSFECVKEAAQKAHAH 130
Query: 499 ----EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
E+ G G + QLS GQK RV A + P +L+LDE T+ LD E
Sbjct: 131 SFISELAS--GYDTEVGEKG----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 555 TIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + A+ D+ +++++H + + A++I + + G++
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQHL--HELLDLDI 481
+ +GPNGAGKST + +I G L P G V+ R +L H L LD+
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 482 SPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536
+Y+ + ++ + ++I GL Q I QLS G + RV A
Sbjct: 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALI 149
Query: 537 QAPHLLLLDEPTNHLD 552
P +L+LDEPT LD
Sbjct: 150 HDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 5e-09
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 408 RYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV--GMVR-KNSHL 464
S G I + + I AL+GPNG+GKSTL I G V G + K
Sbjct: 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG--- 63
Query: 465 RFARYHQHLHELLDLDISP-----LDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVC 516
++ DL + Q P VK+ + +R + G +G
Sbjct: 64 ---------EDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--NEGFSG----- 107
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLV 573
G+K R L P L +LDEP + LD++ + +A+ IN EG ++++
Sbjct: 108 -------GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 574 SHDFRLINQV-AEEIWICENGKVTK 597
+H RL++ + + + + +G++ K
Sbjct: 161 THYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 394 KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
K +I V+NVSF Y + +N+ F I+ +A++G NG+GKST+ ++ G L P
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 454 SVGMVR------KNSHLRFARYH----------QHLHELLDLDISPLDYMLQSFPEVK-- 495
G ++ +L+ R Q + ++ DI+ + L E K
Sbjct: 62 QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIA---FGL----ENKKV 114
Query: 496 DREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
++M+ II G+ P + LS GQK RV A + P +++ DE T+ L
Sbjct: 115 PPKKMKDIIDDLAKKVGMEDYLDKEP-QNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 552 D 552
D
Sbjct: 174 D 174
|
Length = 271 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 7e-09
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 40/193 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDI 146
+++ S +F G + L L + G + LLG NG+GKSTL+ +L G V PD +I
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSG---VYPPDSGEI 65
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL-VACEDDESQE----QLMDIYD--- 198
+ + S A +A QE + + +
Sbjct: 66 LIDGKPVAFSSPRD-----------------ALAAGIATV---HQELSLVPNLSVAENIF 105
Query: 199 -------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
R I RA +L LG + D S R + +ARAL
Sbjct: 106 LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-VGDLSIAQRQMVEIARALSFDA 164
Query: 252 HLLLLDEPTNHLD 264
+L+LDEPT L
Sbjct: 165 RVLILDEPTAALT 177
|
Length = 500 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+L+ L + G+ L+G +G GKST++++L P I
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI---------------- 60
Query: 161 LTCVMEVDEERVR---LEKLAEQ--LVACEDDESQE-QLMDI-------YDRLDDISADT 207
+D +R L L Q LV SQE L D Y + D +
Sbjct: 61 -----LLDGVDIRDLNLRWLRSQIGLV------SQEPVLFDGTIAENIRYGKPDATDEEV 109
Query: 208 AEA-RAANI---LHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
EA + ANI + L G+ + ++ ++ SGG + RIA+ARAL P +LLLDE T+
Sbjct: 110 EEAAKKANIHDFIMSLPDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 262 HLD 264
LD
Sbjct: 169 ALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 7e-09
Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 28/239 (11%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+D +++ +G++G +GSGKSTLL VL NR + + D ++ K
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYD--------SKIKVDGK--- 72
Query: 162 TCVMEVDEERVRLE--KLAEQLVACEDDESQEQLMDIYDRLDD--ISADTAEAR-----A 212
V+ ++ +++ KL +++ + + IYD + S E R
Sbjct: 73 --VLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIV 130
Query: 213 ANILHGLGFTKEMQQK---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269
L +G KE+ + SGG + R+ +ARAL +KP +LL+DEPT+ +D+
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 270 WLEEELKTYKR--ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+E+ + K +VI+SH+ + V + L +L +G + E F + EL E
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 54/184 (29%), Positives = 73/184 (39%), Gaps = 38/184 (20%)
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
G + I +NV RY D + L F + L+GPNGAGK+T L ++ G
Sbjct: 1 GPMSVAPIDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58
Query: 453 PSVGMVRK-----NSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGR 506
P G + S R AR + D LD P+ RE + + GR
Sbjct: 59 PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD-----------PDFTVRENLL-VFGR 106
Query: 507 Y-GLTG---RQQV--------------CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
Y GL+ R V + +LS G K R+ A P +L+LDEPT
Sbjct: 107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166
Query: 549 NHLD 552
LD
Sbjct: 167 TGLD 170
|
Length = 306 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 7e-09
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 38/185 (20%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIF 147
++ N S + + L+ LE+ G LLG NG+GK+TLL ++G V IF
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIF 62
Query: 148 H---LTREMPASD--KSALTCVMEVDEERVRL---EKLAEQLVACEDDESQEQLMD-IYD 198
+T +P + + + V E RL E L A D E+QE+ ++ +Y+
Sbjct: 63 DGEDITG-LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE 121
Query: 199 ---RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
RL KE + ++ SGG + +A+ARAL +P LLL
Sbjct: 122 LFPRL----------------------KERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159
Query: 256 LDEPT 260
LDEP+
Sbjct: 160 LDEPS 164
|
Length = 237 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 65/237 (27%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVS RY ++ I+ L L+GP+G+GK+T L +I + P+ G +
Sbjct: 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQS---FPEVK------------ 495
+ DIS LD Y++Q FP +
Sbjct: 60 ID----------------GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL 103
Query: 496 --DREEMRKII----GRYGLTGRQ--QVCPIRQLSDGQKCRV-VFAYLAWQAPHLLLLDE 546
D+E ++K GL + P +LS GQ+ RV V LA P +LL+DE
Sbjct: 104 GWDKERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAAD-PPILLMDE 161
Query: 547 PTNHLDMETIDALADAINDFEGGL----VLVSHD----FRLINQVAEEIWICENGKV 595
P LD T L + I + + L V V+HD +L A+ I + + G++
Sbjct: 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL----ADRIAVMDAGEI 214
|
Length = 309 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+++ + +F G +L+ L++ G ++G +GSGKSTLL ++ P +
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 145 --DIFHLTREMPASDKSALTCVMEVDEERVRLEK---LAEQLVACEDDESQEQLMDIYDR 199
DI L+ E RL + + Q A D + +++
Sbjct: 61 GEDISGLSEA-----------------ELYRLRRRMGMLFQSGALFDS------LTVFEN 97
Query: 200 L-------DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+ +S + L +G + + + SGG + R+ALARAL + P
Sbjct: 98 VAFPLREHTRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPE 156
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKL 307
LLL DEPT LD A +++ +++ K+ L ++++H D + I L K+
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 62/223 (27%), Positives = 93/223 (41%), Gaps = 52/223 (23%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+K+ N S + +L + LE+ G + +LG GSGKS LL + P I
Sbjct: 1 LKVENLSKDWKEFKLKNVS-LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 145 --DIFHLTREMPASDKS------ALTCVMEVDEE-----RVRLEKLAEQLVACEDDESQE 191
DI +L E D S AL M V + + R E
Sbjct: 60 GKDITNLPPEK--RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE------------ 105
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
I ++ +I+ I H L +K + SGG + R+A+ARAL V P
Sbjct: 106 ----IERKVLEIAEML------GIDHLL-------NRKPETLSGGEQQRVAIARALVVNP 148
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKR---ILVI-ISHSQD 290
+LLLDEP + LD+ L EELK ++ + V+ ++H +
Sbjct: 149 KILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 55/198 (27%)
Query: 424 IDLDTRLAL-VGPNGAGKSTLLNLI----YGDLTPS-------VGMVRKNS-----HLRF 466
I+ + L L VG NGAGK+T++ + G+L P+ ++R+ L F
Sbjct: 18 IEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAF 77
Query: 467 ARYHQHLHELL-DLDISPLDYML---QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLS 522
+ + + L I L+ ++ Q E + + S
Sbjct: 78 ENANGKKYTITRSLAI--LENVIFCHQ--------GESNWPLLD----------MRGRCS 117
Query: 523 DGQKCRVVFAY-LAW------QAPHLLLLDEPTNHLDMETID-ALADAINDFEGG----L 570
G+K LA +L LDEPT +LD E I+ +LA+ I + + L
Sbjct: 118 GGEKVLASLIIRLALAETFGSNCG-ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL 176
Query: 571 VLVSHDFRLINQVAEEIW 588
++++HD L+ A+ I+
Sbjct: 177 IVITHDEELV-DAADHIY 193
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GN 135
K R+V S+ + + + LE+ G +G++G +G+GK+TL ++ G
Sbjct: 281 KVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGE 340
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE------RVRLEKLAEQLVACEDDES 189
V V D + +T+ P A + + +E R L+ L E +
Sbjct: 341 VNVRVGD--EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG------- 391
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFT----KEMQQKKTKDFSGGWRMRIALAR 245
+++ D L A +A L +GF +E+ K + S G R R+ALA+
Sbjct: 392 ----LELPDEL-------ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQ 440
Query: 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEE-LKTYKRI---LVIISHSQDFLNGVC 296
L +P +++LDEPT +D V + LK + + +I+SH DF+ VC
Sbjct: 441 VLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC 495
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDH 143
++ + F G L D + G +GL+G NG+GK+TL ++ P + D
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 144 IDI----------------FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD 187
DI F + R P + L VM V + L E+
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPEL--TVLENVM-VAAQARTGSGLLLARARREER 118
Query: 188 ESQEQLMDIYDR--LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245
E++E+ ++ +R L D+ A+ A + +G QQ+ R+ +AR
Sbjct: 119 EARERAEELLERVGLADL----ADRPAGELSYG-------QQR-----------RLEIAR 156
Query: 246 ALYVKPHLLLLDEPT---NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
AL P LLLLDEP N + + L EL+ ++++ H D + + + L
Sbjct: 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216
Query: 303 D 303
D
Sbjct: 217 D 217
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQD 290
SGG R RIALARALY P L++LDEP ++LD + L LK +V+I+H
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 291 FLNGV 295
L V
Sbjct: 516 LLGCV 520
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 39/205 (19%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIY-------GDL--------TPSVG--MVRKN 461
IDL+ + ++GP+G+GKSTLL I GDL P V ++R+
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 462 SHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ + F +++ HL L ++ PL S E ++ R+++ + GL R P
Sbjct: 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEA--EKQARELLAKVGLAERAHHYP-S 135
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME-------TIDALADAINDFEG-GLV 571
+LS GQ+ RV A P L+L DEPT+ LD E + LA+ EG +V
Sbjct: 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-----EGMTMV 190
Query: 572 LVSHDFRLINQVAEEIWICENGKVT 596
+V+H+ +VA + + G++
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIA 215
|
Length = 240 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
I + + F + L ++GP+G+GKSTL L+ G P+ G VR L A Q E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----LDGADLRQWDRE 406
Query: 476 LLDLDISPLDYMLQSFP--------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG--- 524
L I L ++ F + + K+I L G ++ I +L G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHEL--ILRLPQGYDT 464
Query: 525 ------------QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG- 569
Q+ R+ A + P L++LDEP ++LD E ALA AI GG
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524
Query: 570 LVLVSHDFRLINQVAEEIWICENGKV 595
+V+++H + ++I + ++G++
Sbjct: 525 VVVIAHRPSAL-ASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 22/197 (11%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS--- 159
L D LE+ G L+G GSGKSTLL L P + + + + K
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 160 ---ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANIL 216
+ V + E ++ E + + + + I + AE AA L
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFG-------------IPKEKAEKIAAEKL 128
Query: 217 HGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW---LEE 273
+G E +K + SGG R+A+A L ++P +L+LDEPT LD A + L E
Sbjct: 129 EMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188
Query: 274 ELKTYKRILVIISHSQD 290
+ + +V+++H D
Sbjct: 189 SIHQSGQTVVLVTHLMD 205
|
Length = 288 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 45/189 (23%)
Query: 118 LLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKS--------ALTCV 164
LLG +G GK+TLL +L E P + D D+ ++ P + AL
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV----PPHLRHINMVFQSYALFPH 56
Query: 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
M V+E +A L ++ + + R L L +E
Sbjct: 57 MTVEE------NVAFGL-----------------KMRKVPRAEIKPRVLEAL-RLVQLEE 92
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL-- 282
+K SGG + R+ALARAL KP +LLLDEP + LD ++ ELKT + L
Sbjct: 93 FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152
Query: 283 --VIISHSQ 289
V ++H Q
Sbjct: 153 TFVFVTHDQ 161
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 35/217 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S + + + D L + G L+G +GSGK+T L ++ NR + P +I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-NRLIE-PTSGEIL 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAE---------QLVACEDDESQEQLMDIYD 198
+D E + E Q + + + +
Sbjct: 60 -------------------IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP 100
Query: 199 RLDDISADTAEARAANILHGLGF-TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+L + + RA +L +G E + + SGG + R+ +ARAL P +LL+D
Sbjct: 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
EP LD L+EE+K ++ L V ++H D
Sbjct: 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197
|
Length = 309 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 55/248 (22%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY---------- 448
+ NVSF Y P I + F I L +A+VG +GAGKST+L L++
Sbjct: 262 AVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320
Query: 449 ------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLD-LDISPLDY 486
L ++G+V +++ L ++ R E+ + + +
Sbjct: 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHD 380
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
+QS PE +G GL +LS G+K RV A + P +L+LDE
Sbjct: 381 FIQSLPEG-----YDTGVGERGL----------KLSGGEKQRVAIARTILKNPPILILDE 425
Query: 547 PTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
T+ LD T A+ A+ + G ++++H I A+EI + +NG++ + G
Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGT--- 480
Query: 605 YKETLRAK 612
++E L A
Sbjct: 481 HEELLAAG 488
|
Length = 497 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G E+L+ G LLG NG+GKSTLL L P + I E +
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI---DGEPLDYSR 60
Query: 159 SALTCVMEVDEERVR----LEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARA 212
L E R R + +QL A + D+ D+ ++ S E R
Sbjct: 61 KGLL------ERRQRVGLVFQDPDDQLFAADVDQ------DVAFGPLNLGLSEAEVERRV 108
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
L +G + ++++ T SGG + R+A+A A+ ++P +LLLDEPT LD E
Sbjct: 109 REALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG---RE 164
Query: 273 EELKTYKRI------LVIISHSQD 290
+ L +R+ +VI +H D
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
L + + R A +L +G + + + SGG + R+A+ARAL P +LL DE
Sbjct: 109 ELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167
Query: 259 PTNHLDLDACVWLEEELKTYKRIL--------------VIISHSQDFLNGVCTNIIHLDK 304
T+ LD +T + IL V+I+H + + +C + LD+
Sbjct: 168 ATSALD----------PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ 217
Query: 305 RKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLAR 358
+L G E F + + +++ E +I + + R G L R
Sbjct: 218 GRLVEEGTVSEVFANPKHAI----TQEFIGETLEIDLPEELLERLESGDGPLLR 267
|
Length = 339 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARYH-----QHLHELL 477
++G +GAGKSTL+ + P+ G V NS L AR QH + L
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95
Query: 478 DLDIS-----PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532
+ PL+ L + P+ + + ++ +++ GL + P LS GQK RV A
Sbjct: 96 SRTVFGNVALPLE--LDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIA 152
Query: 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIW 588
P +LL DE T+ LD T ++ + + + L +L++H+ ++ ++ + +
Sbjct: 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA 212
Query: 589 ICENGKV 595
+ NG++
Sbjct: 213 VISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRN-------LEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
++ V+N+S + R + F + LA++G NG+GKSTL ++ G
Sbjct: 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 451 LTPSVGMVRKNSH-LRFARYH---QHLHELLD---------LDISP-LDYMLQSFPEVKD 496
+ P+ G + N H L F Y + + + L I LD+ L+ +++
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122
Query: 497 REEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ ++I GL L+ GQK RV A P +++ DE LDM
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 554 ETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
L + + + + + V+ +I +++++ + G+V
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEV 228
|
Length = 267 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 407 FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV-------- 458
FRY D+ NL+F + T LVG NG GKSTL + G L P G V
Sbjct: 9 FRYQDEPVLKGLNLDFSLSPVT--GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66
Query: 459 ---------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
R+ F Q + D+D S + + L++ V + E R++ L
Sbjct: 67 YSKRGLLALRQQVATVFQDPEQQIF-YTDID-SDIAFSLRNL-GVPEAEITRRVDEALTL 123
Query: 510 TG----RQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD---METIDALAD 561
R Q PI+ LS GQK RV A L QA +LLL DEPT LD + A+
Sbjct: 124 VDAQHFRHQ--PIQCLSHGQKKRVAIAGALVLQARYLLL-DEPTAGLDPAGRTQMIAIIR 180
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
I +++ SHD LI ++++ +++ G++
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
|
Length = 271 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 113 GRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171
G +GLLG+NG+GK+T +L G+ V D + KS LT + +V +
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGD----------ATVAGKSILTNISDVHQNM 2014
Query: 172 VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTK 231
Q A +D + + + +Y RL + A+ E A + LG + +
Sbjct: 2015 ----GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAG 2069
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHS 288
+SGG + +++ A AL P L+LLDEPT +D A L + + R +V+ SHS
Sbjct: 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS 2129
Query: 289 QDFLNGVCTNI 299
+ +CT +
Sbjct: 2130 MEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 54/235 (22%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++N+S + G I+ N+ I ++G +GAGKSTL+ I P+ G
Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 457 MVR---------KNSHLRFARYH-----QHLHELLDLDISPLDYMLQS--------FP-E 493
V LR AR QH +L S P E
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHF------------NLLSSRTVFDNVALPLE 108
Query: 494 V--KDREEMRKIIG----RYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDE 546
+ + E++ + GL+ + P QLS GQK RV A LA P +LL DE
Sbjct: 109 LAGTPKAEIKARVTELLELVGLSDKADRYP-AQLSGGQKQRVAIARALA-SNPKVLLCDE 166
Query: 547 PTNHLDMETIDA----LADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
T+ LD T + L D IN E GL VL++H+ ++ ++ + + + + G++
Sbjct: 167 ATSALDPATTRSILELLKD-INR-ELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
Length = 343 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 62/236 (26%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV+ RY + NL I L L+GP+G+GK+T + +I + P+ G +
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQS---FP--------------- 492
+ DI D Y++Q FP
Sbjct: 60 ID----------------GEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103
Query: 493 ---EVKDREEMRKIIGRYGLTGRQ--QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
+ K RE +++ GL + P +LS GQ+ RV A P LLL+DEP
Sbjct: 104 KWPKEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEP 162
Query: 548 TNHLDMETIDALADAINDFEGGL----VLVSHD----FRLINQVAEEIWICENGKV 595
LD T D L + + L V V+HD FRL A+ I I +NG++
Sbjct: 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL----ADRIAIMKNGEI 214
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
D A L LG + + + + SGG R R+ +ARAL + +LLLDEPT+HL
Sbjct: 113 KEDEEIVEEA--LELLG-LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 264 D-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
D L+ L E +V++ H + ++I L K+ G
Sbjct: 170 DIAHQIEVLELLRDLNRE---KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 37/239 (15%)
Query: 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
K R+V E L+ + G G +G NG+GK+T L +L P
Sbjct: 27 FKRKYREV------------EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74
Query: 141 PDHIDIFHLTREMPASDKSAL----TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
+ + L +P + V + L L + S L I
Sbjct: 75 SGEVRVAGL---VPWKRRKKFLRRIGVVFGQKTQ------LWWDLPVID---SFYLLAAI 122
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
YD + + R + L + + + S G RMR +A AL +P +L L
Sbjct: 123 YD----LPPARFKKRLDELSELLDLEELLDTP-VRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 257 DEPTNHLDLDACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
DEPT LD+ A + LK Y R +++ SH + + ++ +DK +L Y G
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 48/239 (20%)
Query: 398 PVIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ ++N+S + +G + + F I+ LALVG +G+GKS I G L PS
Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG-LLPSP 63
Query: 456 GMVRKNSHLRFARYHQHLHELLDL-----------DIS-----------PLDYMLQSFPE 493
+ + F +LL I PL + + E
Sbjct: 64 AAAHPSGSILF-----DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118
Query: 494 V----------KDREEMRKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
V R +++ G+ R P +LS GQ+ RV+ A P
Sbjct: 119 VLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALANEPD 177
Query: 541 LLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD + +D L + + ++ ++HD ++ + A+ +++ ++G++
Sbjct: 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236
|
Length = 534 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWI-YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
P++ V +S Y GP R++ F + L +VG +G+GK+TLL I G LTP
Sbjct: 3 DKPLLSVSGLSKLY---GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD 59
Query: 455 VGMV----RKNSHL-----------RFAR-----YHQHLHELLDLDIS--------PLDY 486
G V R R R HQ+ + L + +S +
Sbjct: 60 AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAI 119
Query: 487 MLQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ + + R E + + + R P R S G + R+ A P L+ +D
Sbjct: 120 GARHYGNI--RAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVTRPRLVFMD 176
Query: 546 EPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
EPT LD+ +D L + + +V+V+HD + +A+ + + + G+V
Sbjct: 177 EPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230
|
Length = 258 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 31/174 (17%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH--LTREMPASDKS 159
+L D L + G+ +LG +GSGK+TLL + R V L P
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR---VEGGGTTSGQILFNGQPRKPDQ 78
Query: 160 ALTCVMEVDEERVRLEKL--AEQLVAC-------EDDESQEQLMDIYDRLDDISADTAEA 210
CV V ++ + L L E L + ++ + L D+ A
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL----ALT 134
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
R K SGG R R+++A L P +L+LDEPT+ LD
Sbjct: 135 RIGG-------------NLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 48/239 (20%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
KI + ++ E+L+ L + G + ++G NGSGKSTL + ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP-----SYEVTS 56
Query: 149 LTREMPASDKSALTCVMEVDEERVRL------------------EKLAEQLVACEDDESQ 190
T D +E DE R R E L L A +
Sbjct: 57 GTILFKGQDLLE----LEPDE-RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE 111
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMRIALARALYV 249
E L D+ D L + A A LG +E + + FSGG + R + + +
Sbjct: 112 EPL-DLLDFLKLLKAKLAL---------LGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161
Query: 250 KPHLLLLDEPTNHLDLDA------CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
+P L +LDE + LD+DA + L+ R +II+H Q LN + + +H+
Sbjct: 162 EPKLAILDEIDSGLDIDALKIVAEGI---NRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 35/216 (16%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
K N ++ + + L D +++ + L+G +G GKST L NR
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCF-NR------------ 50
Query: 149 LTREMPASDKSA-LTCVMEVDEERVRLEKLA--EQLVACEDDESQEQLMDIYDRLDDI-- 203
+DK A + ++E++ + V+ + + + V + + IY+ +
Sbjct: 51 ------MNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPK 104
Query: 204 ------SADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLL 254
+ D EA + L +G +E++ K ++ SGG + R+ +ARAL +KP LL
Sbjct: 105 LHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL 164
Query: 255 LLDEPTNHLDLDACVWLEEELK--TYKRILVIISHS 288
LLDEPT+ LD + +EE LK ++ +++++H+
Sbjct: 165 LLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G L+ + + G +LG NG+GKSTL L P I L P
Sbjct: 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI----LFDGKP---- 69
Query: 159 SALTCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDIS---------ADTA 208
+D R L KL E + + +D ++Q +Y D+S D
Sbjct: 70 --------IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQ---DVSFGAVNLKLPEDEV 118
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---- 264
R N L G ++ K T S G + R+A+A L ++P +L+LDEPT LD
Sbjct: 119 RKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
Query: 265 LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
+ L E K ++I +H D + C N+ + + ++ G E F +
Sbjct: 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 43/180 (23%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++NVS Y G + I L+GP+G GK+TLL LI G TP+ G +
Sbjct: 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 460 KNSHLRFARYHQHLHELLDLDIS--PLDYMLQS---FP--------------------EV 494
+ ++ +L P++ + Q+ FP E+
Sbjct: 59 LDGK-----------DITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI 107
Query: 495 KDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
K+R E ++ G R+ QLS GQ+ RV A P +LLLDEP LD+
Sbjct: 108 KERVAEALDLVQLEGYANRK----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 57/246 (23%)
Query: 389 FPSCGKIPPP----VIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKST 442
P G + P +I Q+VSF Y + D P + + L F + +ALVGP+G+GKST
Sbjct: 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKST 522
Query: 443 LLNLIYGDLTPSVGMVRKNSHLRFARY-HQHLHE--------------------LLDLDI 481
+ L+ P+ G V + + +Y H +LH L
Sbjct: 523 VAALLQNLYQPTGGQVLLDG-VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 482 SPLDYML------------QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
+P + ++ FP D E +G G QLS GQK R+
Sbjct: 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTE-----VGEKG----------SQLSGGQKQRI 626
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWI 589
A + P +L+LDE T+ LD E L ++ + ++L++H + + A++I +
Sbjct: 627 AIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILV 685
Query: 590 CENGKV 595
+ G V
Sbjct: 686 LKKGSV 691
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
+ +S + R +L +G +E + + SGG R RI +ARAL + P L++ DEP
Sbjct: 77 ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136
Query: 260 TNHLDL 265
+ LD+
Sbjct: 137 VSALDV 142
|
Length = 268 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 44/233 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I + VS YS G I +++ + +VGP+GAGKSTL+ LI + P+ G +
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 459 --------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
R+ + F + HL E D ML+ V D E I+
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQ--PHLFEGTVKDNIEYGPMLKGEKNV-DVEYYLSIV 118
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN 564
GL ++ LS G+ RV A P +LLLDEPT+ LD + + + + I
Sbjct: 119 ---GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKVTK---------WEGNILDYKET 608
+ + L IWI N + K +G +++Y +T
Sbjct: 176 KLKNKMNLTV------------IWITHNMEQAKRIGDYTAFLNKGILVEYAKT 216
|
Length = 241 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 29/214 (13%)
Query: 408 RYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA 467
Y I N+ + +A+ GP+G GKSTLL ++ ++P+ G +
Sbjct: 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL----LFEGE 65
Query: 468 RYHQHLHELLDLDISPLDYMLQS---FPEV---------------KDREEMRKIIGRYGL 509
E +S Y Q+ F + DR ++ R+ L
Sbjct: 66 DVSTLKPEAYRQQVS---YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL 122
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----ND 565
I +LS G+K R+ P +LLLDE T+ LD + + I +
Sbjct: 123 PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 566 FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
++ ++HD + A+++ + G + +
Sbjct: 183 QNVAVLWITHDKDQAIRHADKVITLQPGHAGEMQ 216
|
Length = 223 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 47/226 (20%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ ++NV + + +++ I+ + L+GP+G GKSTLL +I G
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 450 -------DLTPS---VGMVRKNSHLRFARY-HQHLHELLDLDISPLDYMLQSFPEVKDR- 497
DL P + MV +N +A Y H ++E + L E+ R
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQN----YALYPHMTVYENI---AFGLKLRGVPKAEIDKRV 114
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLD- 552
+E+ K++G L R+ QLS GQ+ RV A +A P + LLDEP ++LD
Sbjct: 115 KEVAKLLGLEHLLNRK----PLQLSGGQRQRVALA----RALVRKPKVFLLDEPLSNLDA 166
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + + V+HD +A+ I + +G++
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
|
Length = 338 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 51/222 (22%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
V++ S +F G E++ + L +N G LLG +G GK+T+L ++ E P I
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74
Query: 145 --DIFHLTREMPASDKS--------ALTCVMEVDEE---RVRLEKLAEQLVACEDDESQE 191
DI H+ PA ++ AL M V E +R++K
Sbjct: 75 GQDITHV----PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA----------- 119
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
+I+ EA L +E Q+K SGG + R+A+ARA+ KP
Sbjct: 120 ----------EITPRVMEALRMVQL------EEFAQRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
+LLLDE + LD ++ ELK +R L V ++H Q
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 53/197 (26%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SVGM 457
++NVS R G + N+ F I + L+GP+G GKSTLL+ + G L + +
Sbjct: 5 LKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYM-------LQSFPEVKDREEMRKI---IGRY 507
L Q +L D ++ +K + R
Sbjct: 63 WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS 122
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
GL G P LS GQ+ RV P LLLDEP + LD+ AL D +
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWV 177
Query: 567 -----EGGL--VLVSHD 576
G+ V V+HD
Sbjct: 178 FSEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA-------- 467
+ +N+ I+ LA+ G G+GK++LL LI G+L PS G ++ + + F+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 468 -----------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
Y ++ ++ + + L+ + FPE KD ++G G+T
Sbjct: 112 GTIKENIIFGVSYDEYRYKSV-VKACQLEEDITKFPE-KD----NTVLGEGGIT------ 159
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 55/187 (29%), Positives = 73/187 (39%), Gaps = 38/187 (20%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
G + I + VS Y D + L F + L+GPNGAGKST+ +I G
Sbjct: 32 SIPGSMSTVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
Query: 450 DLTPSVGM-----VRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKI 503
+P G V + R AR + D LD E RE + +
Sbjct: 90 MTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD-----------LEFTVRENLL-V 137
Query: 504 IGRY-GLTGRQ--QVCP---------------IRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
GRY G++ R+ V P + LS G K R+ A P LL+LD
Sbjct: 138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
Query: 546 EPTNHLD 552
EPT LD
Sbjct: 198 EPTTGLD 204
|
Length = 340 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 58/182 (31%), Positives = 75/182 (41%), Gaps = 25/182 (13%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
N S G LL L G+ GL+G NGSGKSTLL +LG + P I L
Sbjct: 16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI----LLD 71
Query: 152 EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI--------YDRLDDI 203
P S+ +V L +QL A E +E L+ I R
Sbjct: 72 AQPLESWSSKAFARKV-------AYLPQQLPAAEGMTVRE-LVAIGRYPWHGALGRFG-- 121
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+AD + A L GL K + + SGG R R +A + LLLDEPT+ L
Sbjct: 122 AADREKVEEAISLVGL---KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
Query: 264 DL 265
D+
Sbjct: 179 DI 180
|
Length = 265 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH-ELLDLDISPLDYML 488
+ LVG NG+GKSTL N+I G L+P+VG V +N + L +L ++ +
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLC 112
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
F + + KII + G P+++ S G + ++ F+ P +L++DE
Sbjct: 113 MGFKRKEIKAMTPKII-EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171
Query: 549 NHLDMETIDALADAINDFEGG---LVLVSHDFRLINQVAEEI-WICENGKVT-------- 596
+ D D I +F+ + VSH+ + Q +I WI E GK+
Sbjct: 172 SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI-EGGKLKDYGELDDV 230
Query: 597 --KWEGNILDYKETLRAKVLKEKNK 619
K+E + D+K+ +A+ + +NK
Sbjct: 231 LPKYEAFLNDFKKKSKAEQKEFRNK 255
|
Length = 264 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 36/223 (16%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---- 454
+I ++NVS+ Y D P + N+ I + ++G NG+GKSTL + G L P
Sbjct: 1 MIRLENVSYSYPDGTPAL-ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 455 -------------------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
VG+V +N +F + + E DL P + L P ++
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV--GRTVEE--DLAFGPENLCL---PPIE 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R+ + + + GL + P + LS GQ V A + P L+ DE T+ LD ++
Sbjct: 113 IRKRVDRALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 556 IDALADAINDF-EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A+ + I E G +V ++H+ + A+ I + + GK+
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKI 213
|
Length = 274 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
++D L + G + ++GL+GSGKST++ +L NR + TR D +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL-NR---------LIEPTRGQVLIDGVDIA 93
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
+ + + VR +K+A Q A + L I+A+ +A + L +G
Sbjct: 94 KISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG 153
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----K 276
+ + SGG R R+ LARAL + P +LL+DE + LD +++EL
Sbjct: 154 L-ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 277 TYKRILVIISHSQD 290
++R +V ISH D
Sbjct: 213 KHQRTIVFISHDLD 226
|
Length = 400 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 39/217 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V++ N + F L D L++ G LLG +G GK+T L ++ E P I+
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIY 58
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACE-DDESQEQLMDIYD------RL 200
+ V ++ +A + + M +YD +L
Sbjct: 59 -------------------IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99
Query: 201 DDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ D + R A +L + + +K K SGG R R+AL RA+ +P + L+D
Sbjct: 100 RKVPKDEIDERVREVAELLQ----IEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
EP ++LD V + ELK ++ L + ++H Q
Sbjct: 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 33/184 (17%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
N + + G +++D L +N G GLLG NG+GK+T F++
Sbjct: 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT-----------------TFYMVV 50
Query: 152 EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE----QLMDIYDRL------- 200
+ D + +D+E + L L + QE + + +YD L
Sbjct: 51 GIVPRDAGNII----IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DD+SA+ E RA ++ ++ + SGG R R+ +ARAL P +LLDEP
Sbjct: 107 DDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
Query: 261 NHLD 264
+D
Sbjct: 166 AGVD 169
|
Length = 241 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N+S RY+ D P + +N+ F + ++ +VG GAGKSTL+ ++ L G +
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 460 KN----SHLRFARYHQHLHELLD-LDISPLDYMLQS---------FPEVKDREEMRKI-I 504
+ S + L +L L I P D L S F E D E + +
Sbjct: 67 IDGIDISTIP-------LEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRV 119
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
GL LS GQ+ + A + P +L+LDE T +D T DAL
Sbjct: 120 SEGGL----------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DAL 163
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 62/241 (25%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L++ L +N G ++G +G+GKSTLL + NR V P I ++ L
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVE-PSSGSILLEGTDITKLRGKKLR 75
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG-LG- 220
+ R R+ + + ++ +RL + N+LHG LG
Sbjct: 76 KL------RRRIGMIFQHY-------------NLIERLTVL---------ENVLHGRLGY 107
Query: 221 ----------FTKEMQQ----------------KKTKDFSGGWRMRIALARALYVKPHLL 254
F++E ++ ++ SGG + R+A+ARAL +P L+
Sbjct: 108 KPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYY 310
L DEP LD + + LK + I VII+ H D I+ L ++ +
Sbjct: 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
Query: 311 G 311
G
Sbjct: 228 G 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-08
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR----------KNSHLRFAR 468
G++L + ++L+G +G GKSTLLNLI G P+ G V + + F
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 469 YH----QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
Y + E + L + D +L + + R + + I GLT QLS G
Sbjct: 63 YSLLPWLTVRENIALAV---DRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGG 118
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHD 576
K RV A P +LLLDEP LD T L + + + +++V+HD
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---- 454
++ ++VSF Y D ++ F I + AL+G NG+GKST+ LI G L P
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 455 ---------------------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE 493
VG+V +N +Q + + D++ + L++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPD------NQFVGATVGDDVA---FGLEN--R 113
Query: 494 VKDREEMRKIIGR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
R EM KI+ G+ P LS GQK RV A + P +++LDE T+
Sbjct: 114 AVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 550 HLDMETIDALADAINDF--EGGLVLVS--HDFRLINQVAEEIWICENGKV 595
LD + + I + L ++S HD N A+++ + ++GK+
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKL 221
|
Length = 282 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 34/237 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY+ D P + NL I + +VGP+G+GKSTL L+ TP G V
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 460 KNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ LR + L E + S D + P +I L
Sbjct: 516 VDGVDLAIADPAWLR-RQMGVVLQENVLFSRSIRDNIALCNPGA----PFEHVIHAAKLA 570
Query: 511 GRQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
G + + Q LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 558 ALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
+ + + G +++++H + + I + E G++ + G ++E L +
Sbjct: 631 LIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGR---HEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA 155
+ E+L+ L+ N G ++G +GSGKST L + E P I + E
Sbjct: 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV---NGEEIR 71
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-------ISADTA 208
+ + D+ ++ ++L +L + M + + + + +S A
Sbjct: 72 LKRDKDGQLKPADKRQL--QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA 129
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---- 264
RA L +G E SGG + R+A+ARAL ++P ++L DEPT+ LD
Sbjct: 130 IERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188
Query: 265 ---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L L EE +T +V+++H F V +++I L + K++ G + F
Sbjct: 189 GEVLKVMQDLAEEGRT----MVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
|
Length = 256 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 52/191 (27%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-------------AVLGNREV--PVPDHIDIF 147
L+ L + G L+G +G GKSTLL +L +++ P PD + +F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 148 H---LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
L + + AL VD L K + +++ + +
Sbjct: 61 QNYSLLPWLTVRENIALA----VDRVLPDLSK-----------SERRAIVE--EHIA--- 100
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
L GL E K+ SGG + R+A+ARAL ++P +LLLDEP LD
Sbjct: 101 -----------LVGLT---EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
Query: 265 LDACVWLEEEL 275
L+EEL
Sbjct: 147 ALTRGNLQEEL 157
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
+SA +A ++ +G E + FSGG R RIA+ARAL + P +++ DEP +
Sbjct: 124 SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183
Query: 262 HLD-------LDACVWLEEELKT-YKRILVIISH 287
LD L+ + L++EL Y V ISH
Sbjct: 184 ALDVSVQAQVLNLMMDLQQELGLSY----VFISH 213
|
Length = 327 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 35/183 (19%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
GC +D +L G G++G +GSGKSTLL L R P D T M + +
Sbjct: 18 GC---RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----DHGTATYIMRSGAE 69
Query: 159 SALTCVMEVDEERVR-----------LEKLAEQLVACEDDESQEQLMDIYDR-LDDISAD 206
L + E + R+ + L ++ A + E+LM I R +I A
Sbjct: 70 LELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN--IGERLMAIGARHYGNIRA- 126
Query: 207 TAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPTNH 262
TA+ + E+ + D FSGG + R+ +AR L +P L+ +DEPT
Sbjct: 127 TAQDWLEEV--------EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178
Query: 263 LDL 265
LD+
Sbjct: 179 LDV 181
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLRFAR- 468
G+ L+ +AL+G NGAGK+TLL I G + P G + + H R
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79
Query: 469 --Y-------------HQHLHELLDLDISP--------LDYMLQSFPEVKDREEMRKIIG 505
Y ++L LL L+ + + FP +K+R
Sbjct: 80 IAYVPEGRRIFPRLTVEENL--LLGAYARRDKEAQERDLEEVYELFPRLKER-------- 129
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METIDA 558
R G LS G++ + A P LLLLDEP+ L E I
Sbjct: 130 RNQRAG--------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 559 LADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNI--LDYKETLRAKVL 614
L EGG+ +LV + R ++A+ ++ ENG++ G L +R L
Sbjct: 182 LRK-----EGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 56/241 (23%)
Query: 394 KIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY- 448
+P P+ I + V+F Y + L + +ALVGP+GAGKSTL L+
Sbjct: 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
Query: 449 ---------------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLD 478
+L + +V ++ L R+ R E+
Sbjct: 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEA 448
Query: 479 -LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+ + + PE D +G G+T LS GQ+ R+ A +
Sbjct: 449 AARAAHAHEFISALPEGYDTY-----LGERGVT----------LSGGQRQRIAIARAILK 493
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLIN-QVAEEIWICENGK 594
+LLLDE T+ LD E+ + A+ G ++++H RL A+ I + + G+
Sbjct: 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH--RLATVLKADRIVVMDQGR 551
Query: 595 V 595
+
Sbjct: 552 I 552
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
L+G +G GKST L L NR + D I+ +T E+ ++ M++ E R +
Sbjct: 34 ALIGPSGCGKSTFLRCL-NR---MNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGM 89
Query: 177 LAEQ-----LVACEDDESQEQLMDIYDR-LDDISADTAEARAANILHGLGFTKEMQQKKT 230
+ +Q ++ ++ + D+ L D + + +AA TK+ +
Sbjct: 90 VFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE----TKDNLDRNA 145
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
+ FSGG + RI +ARAL V+P ++LLDEPT+ LD + +EE L K ++++H+
Sbjct: 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V+ ++ + F +L + G + L+G +GSGKST+L +L E I +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 148 -HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV---------ACEDDESQEQLMDIY 197
MP + ++ DE+ +R + +V D E +
Sbjct: 61 GEQLYHMPGRNGP----LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPV--- 113
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ ++ AE RA +L +G + + SGG + R+A+ARAL ++P ++L D
Sbjct: 114 -LVLGMARAEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFD 171
Query: 258 EPTNHLDLDACVWLEEELKTYKRI-------LVIISHSQDFLNGVCTNIIHLDKRKLKYY 310
E T+ LD + E L +R+ +++++H F + DK ++
Sbjct: 172 EVTSALDPELV---GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 311 GGNYEAF 317
G E F
Sbjct: 229 GKPDEIF 235
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +N++ Y I +L + AL+GPNG GKSTLL LTP G V
Sbjct: 3 LRTENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60
Query: 460 KN-------SHLRFARY-----HQHL-------HELLDLDISPLDYM-LQSFPEVKDREE 499
S + AR HL EL+ SP ++ L +D
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP--WLSLWGRLSAEDNAR 118
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ + + + + + LS GQ+ R A + Q ++LLDEPT +LD+
Sbjct: 119 VNQAMEQTRINHLADR-RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 31/183 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDL-TPSVGMVR------------KNSHLR-------FARY 469
+A+VG +G+GKSTL+N I G L P+ G R + LR F RY
Sbjct: 37 VAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRY 95
Query: 470 H--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
H HL ++++ P Y + ++++ R GL R + P QLS GQ+
Sbjct: 96 HLLSHLTAAQNVEV-PAVY--AGLERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQ 151
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVA 584
RV A ++L DEPT LD E + A+ + D +++V+HD ++ Q A
Sbjct: 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-A 210
Query: 585 EEI 587
E +
Sbjct: 211 ERV 213
|
Length = 648 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
SGG + R+ALARAL P LLLLDEP + LD L E++ +R L ++++H Q
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Query: 290 D 290
+
Sbjct: 196 E 196
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 41/188 (21%)
Query: 93 FSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHI 144
F G +L+D L++ G L+G +GSGKSTL+ ++ G + D
Sbjct: 8 FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI---DGH 64
Query: 145 DIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYDRLDD 202
D+ R+ + ++ D V L + +AE + ++E++ +
Sbjct: 65 DV----RDYTLASLRRQIGLVSQD---VFLFNDTVAENIAYGRPGATREEVEEA------ 111
Query: 203 ISADTAEARAANILHGL------GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
ARAAN H G+ + ++ K SGG R RIA+ARAL P +L+L
Sbjct: 112 -------ARAAN-AHEFIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILIL 162
Query: 257 DEPTNHLD 264
DE T+ LD
Sbjct: 163 DEATSALD 170
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 39/218 (17%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
L + G +LG +G+GKSTLL ++ E P I I + AS + M
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI--NGVDHTASPPAERPVSMLF 77
Query: 168 DEERVRLEKLAEQLVA------CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
E + Q + + + Q + ++ +G
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVE------------------AAAAQVGL 119
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--- 278
+++ + SGG R R+ALAR L + +LLLDEP + LD L E+
Sbjct: 120 AGFLKRLPGE-LSGGQRQRVALARCLVREQPILLLDEPFSALDPA----LRAEMLALVSQ 174
Query: 279 -----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
K L++++H + + ++ LD ++ G
Sbjct: 175 LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212
|
Length = 231 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 113 GRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171
G +LG +GSGKSTLL +LG PD +I ++P + L E R
Sbjct: 34 GEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEEEL------YEIR 84
Query: 172 VRLEKLAEQLVACEDDESQEQLMDIYD-------RLDDISADTAEARAANILHGLGFTKE 224
R+ L Q A + +++ + L +G
Sbjct: 85 KRMGVLF-QQGALFSS------LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL-- 282
+ SGG R R+ALARA+ + P LL LDEPT+ LD + ++E ++ L
Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197
Query: 283 --VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++++H D L + + L K+ G
Sbjct: 198 TVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 47/215 (21%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+LL++ + G ++G +G+GKSTLL L R + ++
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL------------- 69
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
++ + + + Y DDI T R L
Sbjct: 70 ------INGRPLDKRSFRKII--------------GYVPQDDILHPTLTVRET-----LM 104
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVWLEEELK 276
F +++ SGG R R+++A L P LL LDEPT+ LD L L
Sbjct: 105 FAAKLRG-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159
Query: 277 TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
T + I+ I + + ++ L + ++ Y+G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 40/233 (17%)
Query: 397 PPVIMVQNVSFRYSDDGPWI-YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V +S Y G R++ F + L +VG +G+GKSTLL + G L P
Sbjct: 1 KPLLQVSGLSKSY---GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH 57
Query: 456 GMVRKNS---------------HLRFAR-----YHQHLHELLDLDIS--------PLDYM 487
G R R HQ+ + L + +S +
Sbjct: 58 GTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG 117
Query: 488 LQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
+ + + R + + + R P R S G + R+ A P L+ +DE
Sbjct: 118 ARHYGNI--RATAQDWLEEVEIDPTRIDDLP-RAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 547 PTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
PT LD+ +D L + D +++V+HD + +A+ + + + G+V
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIY------------------------GDLTPS- 454
L F + ++AL+GP+G+GKST+L ++ G L P+
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 455 ---VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ +R + F ++ H+ + +++ ++ + + +++ GL
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----E 567
+ P QLS GQ+ RV A P ++L DE T+ LD E + + + I +
Sbjct: 139 KADHMPA-QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD 197
Query: 568 GGLVLVSHDFRLINQVAEEIW------ICENGK 594
++LV+H+ + A+ + I E GK
Sbjct: 198 LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+++ VS RY + + L+ I +A+VG +G GKSTLL L+ G TPS G +
Sbjct: 13 LLLNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70
Query: 460 KNSHLRFARYHQHLHELLDLDISPL--DYMLQSFPEVKD----------REEMRKIIGRY 507
+ L E + D + D L + +V D R+ + +
Sbjct: 71 AGTAP--------LAEARE-DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV 121
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
GL R P LS GQK RV A P LLLLDEP LD T + D I
Sbjct: 122 GLADRANEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 567 -EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ G ++LV+HD +A+ + + E GK+
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSV---------GMVRKNSHLR----FARYHQ----H 472
LA++G +GAGK+TL+N + V GM +R + +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL-----TGRQQVCPIRQLSDGQKC 527
L L M + + + RE + +++ GL T ++ LS G++
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLD 552
R+ FA P LL DEPT+ LD
Sbjct: 174 RLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 31/185 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARYHQHLHELLDLDIS 482
L LVGPNG GKST L ++ G L P++G R + + +LL+ D+
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVK 88
Query: 483 P------LDYMLQSFP--------EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQ 525
+D + ++ + +R ++ +++ + L R I QLS G+
Sbjct: 89 VIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN----IDQLSGGE 144
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLDME---TIDALADAINDFEGGLVLVSHDFRLINQ 582
RV A + DEP+++LD++ L + + + +++V HD +++
Sbjct: 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204
Query: 583 VAEEI 587
+++ I
Sbjct: 205 LSDYI 209
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDIS 482
+ ++GPNG GKST L ++ G+L P++G R + +L + ++
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELR 162
Query: 483 PL------DY-----------MLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ D +L+ F EV +R + ++ R +
Sbjct: 163 AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR----------DVS 212
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHD 576
+LS G+ RV A + + DEP+++LD+ A I + +G V+V HD
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 577 FRLINQVAEEIWI 589
+++ +++ + I
Sbjct: 273 LAVLDYLSDFVHI 285
|
Length = 591 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L++ LEL G + LLG +GSGKSTLL +L P +I L + + AL+
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLL--TGDLKPQQGEIT-LDGVPVSDLEKALS 74
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
++ V +R L + + LG
Sbjct: 75 SLISVLNQRPYL------------------------------------FDTTLRNNLG-- 96
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ FSGG R R+ALAR L ++LLDEPT LD
Sbjct: 97 --------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P I++ N Y +D P I NL + ++ +VGPNGAGKSTLL+LI GD
Sbjct: 259 PRIVLNNGVVSY-NDRP-ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYS- 315
Query: 458 VRKNSHLRFARYH----------QH-------LHELLDLDISPLDYMLQSF-------PE 493
N F R +H LH + S + +L F
Sbjct: 316 ---NDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA 372
Query: 494 VKDREEM--RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
V DR++ ++ + G+ R P LS GQ+ + + P LL+LDEP L
Sbjct: 373 VSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGL 432
Query: 552 D-------METIDALADAINDFEGGLVLVSH 575
D +D L I++ E L+ VSH
Sbjct: 433 DPLNRQLVRRFVDVL---ISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 47/150 (31%)
Query: 431 ALVGPNGAGKSTLLNL---------IYGDLTPSVGMVRKNSHLRFARY--HQHLHELLDL 479
AL+G +GAGK+TLL++ I G++ + G + R Y Q +H
Sbjct: 37 ALMGESGAGKTTLLDVLAGRKTAGVITGEILIN-GRPLDKNFQRSTGYVEQQDVHS---- 91
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539
P + RE +R +R LS Q+ R+ P
Sbjct: 92 ------------PNLTVREALR------------FSALLRGLSVEQRKRLTIGVELAAKP 127
Query: 540 HLLLLDEPTNHLD-------METIDALADA 562
+L LDEPT+ LD + + LAD+
Sbjct: 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADS 157
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 35/159 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA-------- 467
+ +N+ F ++ LA+ G G+GKS+LL +I G+L PS G ++ + + F+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP 500
Query: 468 -----------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
Y ++ + + + L+ + FPE KD + ++G G+T
Sbjct: 501 GTIKDNIIFGLSYDEYRYTSV-IKACQLEEDIALFPE-KD----KTVLGEGGIT------ 548
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P HLD+ T
Sbjct: 549 ----LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 34/213 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+K+ + S ++ + ++ +++ + ++G +G GKST + L NR V V
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGPVKVE 66
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
+D F + + R+ + +L Q + M IY+ +
Sbjct: 67 GVVDFFG----------------QNIYDPRININRLRRQ-IGMVFQRPNPFPMSIYENVA 109
Query: 202 ---DISADTAEARAANI----LHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKP 251
ISA +A I L G +E++ K K SGG + R+ +ARAL +KP
Sbjct: 110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP 169
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRILVI 284
+LL+DEP + LD A + +EE + + + L I
Sbjct: 170 KVLLMDEPCSALDPIATMKVEELIHSLRSELTI 202
|
Length = 259 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
KEM ++ D SGG + ++A+ARAL +P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI----DALADAINDFEGGLVLVS 574
R LS G+K RVV A + P L L DEPT LD +T +AL +A+ +VL S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 575 HDFRLINQVAEE-IWICENGKVTKWEGN 601
H +I ++++ IW+ ENG++ + EG
Sbjct: 227 HWPEVIEDLSDKAIWL-ENGEIKE-EGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L L + G L+G +G+GKSTL +L P I + D L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL----------DGVDL- 404
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI-YDRLDDISADTAEARAANIL-HGLG 220
++ E R R+ + + V + + +I Y R D A E AA H
Sbjct: 405 RQLDPAELRARMALVPQDPVLF----AASVMENIRYGRPD---ATDEEVEAAARAAHAHE 457
Query: 221 FTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
F + + ++ SGG R RIA+ARA+ +LLLDE T+ LD
Sbjct: 458 FISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV-------------------RKNSHLRFARYHQH 472
++G +G+GKST + ++ + P+ G + RK + F ++
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532
H + + S L L +PE + +E+ +++ GL + P +LS G + RV A
Sbjct: 84 PHMTILQNTS-LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSGGMQQRVGLA 141
Query: 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIW 588
P +LL+DE + LD D++ D + + L V ++HD ++ + I
Sbjct: 142 RALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV 201
Query: 589 ICENGKVTK 597
I + G++ +
Sbjct: 202 IMKAGEIVQ 210
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 54/226 (23%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV--------GMVRKNSH---- 463
I R+L I+ AL+G NGAGKSTLL + GDLT G V N
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 464 ---LRFARYH----QHLHELLDLDISPLDYMLQSFPEVK--------DREEMRKIIGRYG 508
R AR Q + +L +P + D E + + G
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREI-VLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 509 ---LTGRQQVCPIRQLSDGQKCRVVFAYL---------AWQAPHLLLLDEPTNHLD---- 552
L GR + LS G+ RV FA + A Q P LLLDEPT LD
Sbjct: 135 ATALVGRD----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
++T+ LA D+ G++ + HD L + A+ I + +G +
Sbjct: 191 HRLLDTVRRLA---RDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
|
Length = 272 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-07
Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 35/151 (23%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ +VGP G+GK+TL + +L P G V +D + + + Q
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGV----------------IYIDGEDILEEVLDQ 48
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+ ++ S + R+ A P +L+LDE T+
Sbjct: 49 LLLIIVGGKK-------------------ASGSGELRLRLALALARKLKPDVLILDEITS 89
Query: 550 HLDMETIDALADAINDFEGGLVLVSHDFRLI 580
LD E L L+ + +I
Sbjct: 90 LLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G ++G +GSGKSTLL ++ E P + I + ++ A+ + M E +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV--DVTAAPPADRPVSMLFQENNL 81
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
EQ V +L E A + GL ++++ +
Sbjct: 82 FAHLTVEQNVGLGLSPGL--------KLTAEDRQAIEVALARV--GLA---GLEKRLPGE 128
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVII 285
SGG R R+ALAR L +LLLDEP LD LD + L E K ++++
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM---TVLMV 185
Query: 286 SHSQDFLNGVCTNIIHLDKRKLKYYG 311
+H + + ++ LD ++ G
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR--------FARYHQHLHELLDLDI 481
+ ++GPNG GK+T + L+ G + P G L+ Y + +LL
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSEED---LKVSYKPQYISPDYDGTVEDLL-RSA 425
Query: 482 SPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+ F E+ + ++ R P+ +LS G+ RV A +
Sbjct: 426 IRSAFGSSYFKTEIVKPLNLEDLLER----------PVDELSGGELQRVAIAAALSREAD 475
Query: 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEI 587
L LLDEP+ +LD+E +A I F E ++V HD +I+ V++ +
Sbjct: 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRL 526
|
Length = 591 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
+ PP++ +++S +YS G + + ++F + AL+G NGAGKSTL+ +I G
Sbjct: 2 QTSDTTAPPLLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Query: 450 DLTPSVGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
+ P G + + L A+ HQ L + + P + +L FP + +E + +
Sbjct: 60 IVPPDSGTLEIGGNPCARLTPAKAHQ-----LGIYLVPQEPLL--FPNLSVKENILFGLP 112
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYL--AWQA-----------PHLLLLDEPTNHLD 552
+ + ++ + L L A + +L+LDEPT L
Sbjct: 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 553 METIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
+ L I + +G G+V +SH I Q+A+ I + +G +
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 53/228 (23%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ + ++ + L+D L++ + L+G +G GKSTLL L NR + D I
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NR---MNDLIPG 62
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ---LMDIYD----- 198
+ E+ K+ ++V E R R+ +V Q+ M IYD
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRV-----GMVF------QKPNPFPMSIYDNVAYG 111
Query: 199 ---------RLDDISADTAEARAA------NILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243
LD+I +++ +AA + LH SGG + R+ +
Sbjct: 112 LRLHGIKDKELDEI-VESSLKKAALWDEVKDRLHKSAL----------GLSGGQQQRLCI 160
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
ARAL VKP +LL+DEPT+ LD + + +EE ELK K +VI++H+
Sbjct: 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHN 207
|
Length = 253 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 35/199 (17%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVG----------MVR-KNSHLRFARYHQ------- 471
++++G +G+GKST L I PS G +VR K+ L+ A +Q
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 472 ------------HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
H+ L ++ +P+ + S E ++R K + + G+ R Q
Sbjct: 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAV--KYLAKVGIDERAQGKYPV 151
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG-LVLVSHD 576
LS GQ+ RV A P +LL DEPT+ LD E + + + EG +V+V+H+
Sbjct: 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Query: 577 FRLINQVAEEIWICENGKV 595
V+ + GK+
Sbjct: 212 MGFARHVSSHVIFLHQGKI 230
|
Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 6e-07
Identities = 48/206 (23%), Positives = 73/206 (35%), Gaps = 72/206 (34%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDI 146
+++ + F G + L L + G + LLG NG+GKSTL+ +L G + PD +I
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG---LYKPDSGEI 57
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
VD + V A
Sbjct: 58 L-------------------VDGKEVSF------------------------------AS 68
Query: 207 TAEARAANI--LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+AR A I ++ L +Q + +ARAL LL+LDEPT L
Sbjct: 69 PRDARRAGIAMVYQLSV--GERQ------------MVEIARALARNARLLILDEPTAALT 114
Query: 265 LDACVWLEEELKTYKR--ILVI-ISH 287
L + ++ + + VI ISH
Sbjct: 115 PAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH--IDIFHLTREMPAS 156
G +L + L + G G++G +GSGKSTL ++ VP +D L PA
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW 73
Query: 157 DKSALTCVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
+ + V++ E V + + + + + S E++++ +A A A
Sbjct: 74 LRRQVGVVLQ---ENVLFNRSIRDNIALADPGMSMERVIE--------AAKLAGAHDFIS 122
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
G+ + ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ + +
Sbjct: 123 ELPEGY-DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 276 KTY--KRILVIISH 287
R ++II+H
Sbjct: 182 HDICAGRTVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 194 MDIYD------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
M +Y+ +L + + R + LG + +K SGG R R+ALARAL
Sbjct: 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-RKPLQLSGGQRQRVALARAL 148
Query: 248 YVKPHLLLLDEPTNHLDLDACVW---LEEELKTYKRIL----VIISHSQ 289
KP + LLDEP ++LD + E+K L + ++H Q
Sbjct: 149 VRKPKVFLLDEPLSNLD---AKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
|
Length = 338 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 59/193 (30%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
I L + + L+GP+G GK+TLL +I G + G + +
Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR--------------- 66
Query: 479 LDISPL-----DY--MLQS---FP--------------------EVKDR-EEMRKIIGRY 507
DI+ L DY + QS FP EV +R E+ ++G
Sbjct: 67 -DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-- 123
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE 567
L G ++ P QLS GQ+ RV A +P LLLLDEP + LD + L I +
Sbjct: 124 -LPGSERKYP-GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 568 GGL----VLVSHD 576
L ++V+HD
Sbjct: 182 RRLGVTTIMVTHD 194
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 17/194 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
+ D L + G + ++GL+GSGKST + +L P I I D +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI----------DGENIM 58
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
V+ VR +K+ Q A + Q + L + +A +L +G
Sbjct: 59 KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG 118
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK---- 276
+E + + + SGG + R+ LARAL +P +LL+DE + LD +++ELK
Sbjct: 119 L-EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 277 TYKRILVIISHSQD 290
T ++ +V I+H D
Sbjct: 178 TLQKTIVFITHDLD 191
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQ--HLH 474
N+ F + L+GPNGAGK+T +I G L P+ G + N L ++ +L
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78
Query: 475 ELLDL--DISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
E L ++ D + L+ P+ + +++++ + R + G++ I++LS G +
Sbjct: 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQ 137
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
++ F P LL+LDEP + LD ++ L DAI + EG ++ S
Sbjct: 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
|
Length = 300 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 38/258 (14%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV---PVP--- 141
++I + ++F E+L LE+ L+G +GSGKSTLL V NR + P
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVS 62
Query: 142 -----DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
D DIF M+V E R R++ + Q+ + S + + +
Sbjct: 63 GEVYLDGQDIFK----------------MDVIELRRRVQ-MVFQIPNPIPNLSIFENVAL 105
Query: 197 YDRLDDISADTAE--ARAANILHGLGFTKEMQQK---KTKDFSGGWRMRIALARALYVKP 251
+L+ + E R L E++ + SGG + R+ +ARAL +P
Sbjct: 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165
Query: 252 HLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
+LL DEPT +LD + +E ELK I V+++H + + L K ++
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKDMTI-VLVTHFPQQAARISDYVAFLYKGQIV 224
Query: 309 YYGGNYEAFCKTRLELLE 326
+G E F R EL E
Sbjct: 225 EWGPTREVFTNPRHELTE 242
|
Length = 250 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 59/229 (25%)
Query: 400 IMVQNVSFRYSDD---GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I V++ SF + + +++ + +A+VGP G+GKS+LL+ + G+L G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 457 MVRKNSHLRFA------------------------RYHQHLHE-LLDLDISPLDYMLQSF 491
V + + RY + + L+ D L+
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD-------LEIL 113
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
P+ D E IG G+ LS GQK R+ A + + LLD+P + +
Sbjct: 114 PD-GDLTE----IGEKGIN----------LSGGQKQRISLARAVYSDADIYLLDDPLSAV 158
Query: 552 DMETIDALADAINDFEGGL------VLVSHDFRLINQVAEEIWICENGK 594
D + + N G L +LV+H +L+ A++I + +NG+
Sbjct: 159 DAHVGRHIFE--NCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 42/185 (22%), Positives = 63/185 (34%), Gaps = 45/185 (24%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L G NGSGK+TLL ++ P I ++D + +
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTI---------------------KLDGGDIDDPDV 71
Query: 178 AEQLV------ACEDDES-QEQLM---DIYDRLDDISADTAEARA-ANILHGLGFTKEMQ 226
AE A + + E L + A EA A + H
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH--------- 122
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR---ILV 283
S G + R+ALAR L + +LDEPT LD A E ++ + I++
Sbjct: 123 -LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181
Query: 284 IISHS 288
+H
Sbjct: 182 AATHI 186
|
Length = 207 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ ++NV+ R+ +L I + L+GP+G GK+T L +I G
Sbjct: 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 450 -------DLTPS---VGMVRKNSHLRFARY-HQHLHELLDLDIS-PLDYMLQSFPEVKDR 497
DL P + MV +N +A Y H +++ +I+ L E+ +R
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQN----YALYPHMTVYD----NIAFGLKLRKVPKDEIDER 110
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
E+ +++ L R+ +QLS GQ+ RV + P + L+DEP ++LD
Sbjct: 111 VREVAELLQIEHLLDRKP----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 407 FRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSH 463
F S DG + Y N+ F + + ++G NG+GKSTL NLI G P+ G V K S
Sbjct: 28 FFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87
Query: 464 LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
A +L ++ L ++ + K +E + +II + G+ P++ S
Sbjct: 88 ALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEII-EFADIGKFIYQPVKTYSS 146
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGG--LVLVSHDFRLI 580
G K R+ FA P +L++DE + D D +N+F E G + +SH +
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS---L 203
Query: 581 NQV----AEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNK 619
+QV + +W+ G+V ++ G+I + + LK+ N+
Sbjct: 204 SQVKSFCTKALWL-HYGQVKEY-GDIKEVVDHYDE-FLKKYNQ 243
|
Length = 549 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+ + D E G+ Y ++G GSGKSTL+ + P + + +T DK
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQL-------MDIYDRLDDISADTAEARAA 213
+ + + QL ED +E + M++ D + A
Sbjct: 81 RPVRKRIG---MVFQFPESQLF--EDTVEREIIFGPKNFKMNL---------DEVKNYAH 126
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L LGF++++ + SGG +IA+ L + P +++LDEPT LD
Sbjct: 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
|
Length = 286 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I + NVSF Y DD + +N+ + +ALVG G+GKSTL +L+ G + G +R
Sbjct: 341 IDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399
Query: 460 KNSHLRFARYHQHLHE--------------------LLDLDISPLDYMLQSFPEVKDREE 499
+ + H L + L DIS + + Q+ V+ E
Sbjct: 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE-EQVWQALETVQLAEL 458
Query: 500 MRKII-GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
R + G Y G Q LS GQK + A + Q P +L+LDE T ++D T A
Sbjct: 459 ARSLPDGLYTPLGEQG----NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 559 LADAINDF--EGGLVLVSHDFRLINQV-AEEIWICENGKV 595
+ A+ LV+++H RL V A+ I + G+
Sbjct: 515 IQQALAAVREHTTLVVIAH--RLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292
SGG + R+A AR L KP + LDE T+ LD ++ L + LK ++ + H L
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS-L 150
Query: 293 NGVCTNIIHLDK 304
++ LD
Sbjct: 151 WKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 39/185 (21%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
GC +D +L G G++G +GSGK+TLL + R PD + + R+ D
Sbjct: 21 GC---RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDL 75
Query: 159 SALTCVMEVDEERVRLEK-------------LAEQLVACEDDESQEQLMDIYDR-LDDIS 204
++ + ER RL + L Q+ A + E+LM I R +I
Sbjct: 76 YTMS-----EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGN--IGERLMAIGARHYGNIR 128
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPT 260
A+ A + L + E+ + D FSGG + R+ +AR L +P L+ +DEPT
Sbjct: 129 AE-----AQDWLEEV----EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179
Query: 261 NHLDL 265
LD+
Sbjct: 180 GGLDV 184
|
Length = 258 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
+ RNL I +A+VG +GAGK+TLL +I G + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIG----------RYGLTGR-QQVCPIRQLSDG 524
L+ + P F EV E +R G R GL+ +LS G
Sbjct: 458 LIPGEYEP------EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTG 511
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN----DFEGGLVLVSHDFRLI 580
QK R A L + P++LL+DE HLD T +A I+ + L++V+H +
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 581 NQVA 584
N +
Sbjct: 572 NALR 575
|
Length = 593 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 26/58 (44%), Positives = 42/58 (72%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARA+ ++P +LLLDEPT+ LD + + +EE ELK+ K +VI++H+
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN 226
|
Length = 272 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 36/204 (17%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
TG+ A+ DV+ N + + G L L + G L+G +GSGKSTL+ ++
Sbjct: 319 TGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL------VACEDD 187
R PD I + D L L Q+ V +D
Sbjct: 379 -PRFYE-PDSGQI----------------LLDGHDLADYTLASLRRQVALVSQDVVLFND 420
Query: 188 ESQEQLMDIYDRLDDISADTAE--ARAANILH-----GLGFTKEMQQKKTKDFSGGWRMR 240
+ Y R + E AA LG + + SGG R R
Sbjct: 421 TIANNIA--YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQR 477
Query: 241 IALARALYVKPHLLLLDEPTNHLD 264
+A+ARAL +L+LDE T+ LD
Sbjct: 478 LAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 9e-07
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ + SGG R R+ +ARAL +KP +LL+DEPT ++D +EE ELK
Sbjct: 140 KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY 199
Query: 280 RILVIISHS 288
I V+++HS
Sbjct: 200 TI-VLVTHS 207
|
Length = 253 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ A+ A L+ +G ++ SGG + R+A+A L ++P +L+ DEPT
Sbjct: 147 VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG 206
Query: 263 LDLDA---CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
LD + L + K + + +I+H+ + + V +I +DK K+ G YE F
Sbjct: 207 LDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
|
Length = 320 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI-------LVIIS 286
SGG + R+ +ARAL P +LL DE T+ LD + + L + I +V+I+
Sbjct: 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QSILALLRDINRELGLTIVLIT 198
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
H + + +C + ++K ++ G E F
Sbjct: 199 HEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 21/204 (10%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166
L + G GLLG NG+GK+TLL A+LG +P + P + V +
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILG----LIPPAKGTVKVAGASPGKGWRHIGYVPQ 56
Query: 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDR--LDDISADTAEARAANILHGLGFTKE 224
E V + + R + D +A R +
Sbjct: 57 RHEFAWDFPISVAHTVM----SGRTGHIGWLRRPCVADFAAVRDALRRVGLTE------- 105
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRI 281
+ + + SGG R R+ +ARAL +P +LLLDEP LD+ + L EL
Sbjct: 106 LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 282 LVIISHSQDFLNGVCTNIIHLDKR 305
+++ +H C ++ L+ R
Sbjct: 166 ILMTTHDLAQAMATCDRVVLLNGR 189
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 31/174 (17%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D L + G +G GSGKST++ +L VP + + + ++ K+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD--DTLITSTSKNK-- 78
Query: 163 CVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDR--LDD---------ISADTAEA 210
D +++R + L Q ESQ +++ L D +S + AEA
Sbjct: 79 -----DIKQIRKKVGLVFQF-----PESQ-----LFEETVLKDVAFGPQNFGVSQEEAEA 123
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A L +G ++ + +K + SGG R+A+A L ++P +L+LDEPT LD
Sbjct: 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 45/202 (22%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
+N+ ++ +AL GP+GAGKSTLL +Y + P G + +H +
Sbjct: 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI----------LVRHEGAWV 74
Query: 478 DL--------------DISPLDYMLQSFPEV------------------KDREEMRKIIG 505
DL I + L+ P V R R+++
Sbjct: 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLA 134
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
R + R P S G++ RV A +LLLDEPT LD + + I +
Sbjct: 135 RLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 566 FEG---GLVLVSHDFRLINQVA 584
+ L+ + HD + VA
Sbjct: 195 AKARGAALIGIFHDEEVRELVA 216
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 54/210 (25%)
Query: 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHL 149
+N + G +L++ L++ G + G GSGK++LL +LG E P I H
Sbjct: 43 SNLCL--VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHS 97
Query: 150 TRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
R MP + K + + DE R + + AC+ +E
Sbjct: 98 GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYK-----SVVKACQLEE------------ 140
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DI+ N + G G SGG R RI+LARA+Y L LLD P
Sbjct: 141 -DITK---FPEKDNTVLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPF 187
Query: 261 NHLDL-------DACVWLEEELKTYKRILV 283
+LD+ ++CV KT RILV
Sbjct: 188 GYLDVFTEKEIFESCVCKLMANKT--RILV 215
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 44/228 (19%)
Query: 399 VIMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS--- 454
+I V+N++F+Y D + ++ F + L+++G NG+GKST + LI G L
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 455 -------------------VGMVRKNSHLRFARYHQHLHELLDLDIS-PLDYMLQSFPEV 494
+GMV +N +Q + ++ D++ L+ E+
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPD------NQFVGATVEDDVAFGLENKGIPHEEM 117
Query: 495 KDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD- 552
K+R E +++G R+ P R LS GQK RV A P +++LDE T+ LD
Sbjct: 118 KERVNEALELVGMQDFKERE---PAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVA--EEIWICENGKV 595
+E I + +D++ ++ ++HD +++VA + + + +NG+V
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHD---LDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
AD AE R A+ L +G + SGG + RIA+ARA+ ++P +LLLDEP + L
Sbjct: 111 KADIAE-RVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 264 DLDACVWLEEELKTYKRIL-----VIISHSQD 290
D + + EE+ L + ++H QD
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQD 200
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S + A+ RAA + +G + Q+ + SGG + R+ALA L ++P L+ DEPT
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 263 LD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LD L+ L ++ KT +++++H D + I K+ G Y+
Sbjct: 196 LDPQGVKEILEIFDNLNKQGKT----IILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYD 251
Query: 316 AFCKTRLELLENQMK 330
+ L+EN M+
Sbjct: 252 ILSDNKF-LIENNME 265
|
Length = 305 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 14/66 (21%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV------W---LEEELKTYKRILVI 284
SGG + R+ALARAL V+P +LLLDEP LDA V W L EELK V
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGA--LDAQVRKELRRWLRQLHEELKFTS---VF 192
Query: 285 ISHSQD 290
++H Q+
Sbjct: 193 VTHDQE 198
|
Length = 353 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDHI 144
+++ + TF+ + L L ++ G LLG +GSGKSTLL L + HI
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 145 DIF--------HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMD 195
++ L R++ S ++ + + RL L L+ A
Sbjct: 65 ELLGRTVQREGRLARDIRKS-RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+ R + RA L +G Q+ SGG + R+A+ARAL + ++L
Sbjct: 124 WFTREQ-------KQRALQALTRVGMVHFAHQR-VSTLSGGQQQRVAIARALMQQAKVIL 175
Query: 256 LDEPTNHLDLDACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
DEP LD ++ + + L+ + I V+++ H D+ C I+ L + + +Y
Sbjct: 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV-FYD 234
Query: 312 GNYEAFCKTRLELLENQMKQ 331
G+ + F R + L + +
Sbjct: 235 GSSQQFDNERFDHLYRSINR 254
|
Length = 262 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 61/221 (27%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS---------------------VGM 457
++L+ R ++L+GPNGAGK+T+ N + G P+ +G+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 458 VRKNSHLRFAR-----------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI--- 503
VR H+R R HQ L + L L P + R E +
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLK-------TGLFSGLLKTPAFR-RAESEALDRA 134
Query: 504 ---IGRYGLTGRQQVCPIRQ---LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-METI 556
+ R GL RQ L+ GQ+ R+ A P +L+LDEP L+ ET
Sbjct: 135 ATWLERVGLLE----HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 557 D--ALADAI-NDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
+ L + N+ ++L+ HD +L+ +++ I++ G
Sbjct: 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
Length = 255 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 17/183 (9%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ +++ S+ F +L L + G GL+G NG+GK+TLL + P +
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV--- 60
Query: 148 HLTREMPASDKSALTCVMEV----DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
L SA V + + E Q+V + + D + D
Sbjct: 61 -LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF-DTWTETDRA 118
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ + A R + + SGG R R+ LARAL +LLLDEPT L
Sbjct: 119 AVERAMERTG--------VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 264 DLD 266
D++
Sbjct: 171 DIN 173
|
Length = 402 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 88 VKIANFSITFHGCE-LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
++ N + + G + + + LE+ G L+G +GSGK+T + ++ NR + P +I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-NRLIE-PTSGEI 58
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKL--AEQLVACEDDESQEQLMDIYDRLDDIS 204
F + + E D +R K+ Q + + E+ + + +L
Sbjct: 59 FIDGED-----------IREQDPVELR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106
Query: 205 ADTAEARAANILHGLGF-TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ RA +L +G E + + SGG + R+ +ARAL P LLL+DEP L
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 264 DLDACVWLEEELKTYKRIL----VIISHSQD 290
D L+EE K ++ L V ++H D
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 47/240 (19%)
Query: 83 PKSRDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
P+ ++++ N S+ + +L++ ++ G + G++G G+GKSTL+ L
Sbjct: 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 141 PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE-----SQEQLMD 195
I+I D +D + LE L L D + +D
Sbjct: 62 EGKIEI----------D--------GIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+D D E A + G + S G R + LARAL +P +L+
Sbjct: 104 PFDEYSD-----EEIYGALRVSEGG----------LNLSQGQRQLLCLARALLKRPRVLV 148
Query: 256 LDEPTNHLDLDACVWLEEELKT--YKRILVIISHSQDFLNGV--CTNIIHLDKRKLKYYG 311
LDE T +D +++ ++ ++ I+H L + I+ +D ++K Y
Sbjct: 149 LDEATASIDYATDALIQKTIREEFTNSTILTIAHR---LRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 36/217 (16%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV----MEVDEERVR 173
++G +G+GK+TL+ L R S + ++ E R
Sbjct: 56 VMGSSGAGKTTLMNALAFRS---------------PKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 174 LEKLAEQLVACEDDESQEQLMDIYDRL---DDISADTAEARAANILHGLGFTKEMQQK-- 228
+ + + +E LM L ++ R +L LG K +
Sbjct: 101 SAYVQQDDLFIPTLTVREHLM-FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 229 ---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC---VWLEEELKTYKRIL 282
+ K SGG R R+A A L P LL DEPT+ LD V + + L + +
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 283 VIISH---SQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316
+ H S+ F + II + + ++ Y G +A
Sbjct: 220 ICTIHQPSSELF--ELFDKIILMAEGRVAYLGSPDQA 254
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 54/185 (29%), Positives = 77/185 (41%), Gaps = 45/185 (24%)
Query: 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV-LGNREVPVPDHIDIFHL 149
+NFS+ + +L++ +L G+ + G GSGKS+LL + +G E P I H
Sbjct: 432 SNFSL--YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHS 486
Query: 150 TRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
R MP + K + + DE R + AC+ +E
Sbjct: 487 GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT-----SVIKACQLEE------------ 529
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DI+ E + G G T SGG R RI+LARA+Y L LLD P
Sbjct: 530 -DIAL-FPEKDKTVLGEG-GIT----------LSGGQRARISLARAVYKDADLYLLDSPF 576
Query: 261 NHLDL 265
HLD+
Sbjct: 577 THLDV 581
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +ARA+ VKP +LL+DEP + LD + + LEE + K+ ++I++H
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVS RY + P + +N+ F I ++ +VG G+GKS+LL ++ + S G +
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 460 KN----SHLRFARYHQHLHELLD-LDISPLD---------YMLQSFPEVKDREEMRKIIG 505
+ S + LH+L + I P D L F E D EE+ + +
Sbjct: 63 IDGVDISKI-------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD-EELWQALE 114
Query: 506 RYGLTGRQQVCPIR----------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R GL + P LS GQ+ + A + +L+LDE T +D ET
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 556 IDALADAI 563
+ I
Sbjct: 175 DALIQKTI 182
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I NFS + + +++ +++ + ++G +G GK+TLL + NR + DHI F
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI-NR---MNDHIPGF 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--------- 198
+ ++ + ++V E R ++ + ++ M IYD
Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP--------MSIYDNVAFGPRIH 111
Query: 199 ------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+LD I ++ + A K K SGG + R+ +ARAL V+P
Sbjct: 112 GVKSKHKLDRIVEESLKKAAL-----WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166
Query: 253 LLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISHS 288
++LLDEPT+ LD A +E+ L+ + +VI++H+
Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 47/221 (21%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L+ L++ + L+G +G GKST L L NR + D I + E+ +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTL-NR---MNDLIPSVKIEGEVLLDGQDIYK 74
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD---------------RLDDISADT 207
++V++ R R+ + +Q M IYD +LD+I +
Sbjct: 75 SDIDVNQLRKRVGMVFQQ--------PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKS 126
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ A + + K+ +K SGG + R+ +ARAL V+P +LL+DEPT+ LD +
Sbjct: 127 L--KGAALWDEV---KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIS 181
Query: 268 CVWLEE---ELKTYKRILVIISHSQD-----------FLNG 294
+ +EE ELK +VI++H+ FLNG
Sbjct: 182 TLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNG 221
|
Length = 250 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRFARYHQHLHELLDLDI 481
+ ++GPNG GK+T + ++ G L P G + K +++ A Y + +LL I
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK-ADYEGTVRDLL-SSI 85
Query: 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
+ Y F + E+ K + + R+ + +LS G+ RV A + +
Sbjct: 86 TKDFYTHPYF-----KTEIAKPLQIEQILDRE----VPELSGGELQRVAIAACLSKDADI 136
Query: 542 LLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAE 585
LLDEP+ +LD+E + I F E +V HD +I+ +A+
Sbjct: 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQ---QKKTKDFSGGWRMRIALARALYVKPHLLL 255
+LD+I + L +G +E+ + + SGG + R+ +ARA+ VKP +LL
Sbjct: 121 KLDEIVEKS--------LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172
Query: 256 LDEPTNHLDLDACVWLEEELKTYKR--ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
+DEP + LD A +E ++ K+ +++++HS V + ++ Y
Sbjct: 173 MDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232
Query: 314 YEAF 317
E F
Sbjct: 233 QEIF 236
|
Length = 251 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI--LVIISHS 288
SGG + R+ +ARAL V+P +LL+DEPT+ LD + +E+ + K++ ++I++H+
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR-----------YHQHLHELLD 478
AL+G NGAGKSTLL ++ G+ P G + +RFA +Q LH + +
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 479 LDISPLDYMLQSFPE---VKDREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVF 531
+ ++ + L P + +R + G+ P++ LS GQ+ V
Sbjct: 94 MTVAE-NLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEI 151
Query: 532 A-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL-VSHDFRLINQVAEEI 587
A LA A ++ DEPT+ L I+ L I + EG ++L VSH R+ EEI
Sbjct: 152 AKALARNA-RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH--RM-----EEI 203
|
Length = 501 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI--FHLTREMPASDKSA 160
L + EL G L+G GSGKSTL+ P I I +H+T E +K+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPE--TGNKN- 79
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI---------SADTAEAR 211
L+KL ++ V+ + QL + L D+ S D A+ +
Sbjct: 80 -------------LKKLRKK-VSLVFQFPEAQLFE-NTVLKDVEFGPKNFGFSEDEAKEK 124
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
A L +G ++++ K + SGG R+A+A + +P +L LDEP LD + +
Sbjct: 125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184
Query: 272 EEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKL 307
+ K Y++ +++++H+ D + +++ L+ KL
Sbjct: 185 MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 28/231 (12%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I + +F + + + E+ G +GLLG NG+GK+T ++ P I
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 148 --HLTREMPASDKSALTCVMEVDEER--VRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
L++E+ + + EER + +QL L +
Sbjct: 63 GGPLSQEIKN-------RIGYLPEERGLYPKMTVEDQLK-------------YLAELKGM 102
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ + L L + KK K+ S G + +I A+ +P LL+LDEP + L
Sbjct: 103 PKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161
Query: 264 DLDACVWLEEELKTYK-RILVII--SHSQDFLNGVCTNIIHLDKRKLKYYG 311
D L++ + K II SH + + +C ++ L K + YG
Sbjct: 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 46/260 (17%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L + E+ G G++GLNGSGKSTL ++ +P +DI +AL
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI---------KGSAALI 90
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY-DRLDDISADTAEARAANILHGLGF 221
+ L QL E+ E + +M + +++ +I + E A+I
Sbjct: 91 AISS---------GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF--ADI------ 133
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKTY 278
K + Q K +S G + R+ A ++++ P +L++DE + D C+ E K
Sbjct: 134 GKFIYQP-VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192
Query: 279 KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG------GNYEAFCKTRLELLENQMKQY 332
+ + ISHS + CT + L ++K YG +Y+ F K ++ + K +
Sbjct: 193 GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERKDF 252
Query: 333 NWEQDQIAHMKNYIARFGHG 352
EQ I++F HG
Sbjct: 253 REEQ---------ISQFQHG 263
|
Length = 549 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 38/204 (18%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
L+QD L L G L+G +GSGKS T LA+LG L + +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILG-------------LLPPGLTQTSGEI 47
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDES--------QEQLMDIYDRLDDISADTAEARA 212
L + +R +A + ++ + ++ L +S A A
Sbjct: 48 LLDGRPLLPLSIRGRHIATIM---QNPRTAFNPLFTMGNHAIETLRSLGKLSKQ-ARALI 103
Query: 213 ANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
L GL +E+ +K SGG R+ +A AL ++P L+ DEPT LD+
Sbjct: 104 LEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA- 162
Query: 271 LEEELKTYKRI-------LVIISH 287
LK + + +++I+H
Sbjct: 163 --RVLKLLRELRQLFGTGILLITH 184
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G + D++ N + T+ G E+ L++ ++ G+ L+G +GSGKST+ A L
Sbjct: 330 EGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI-ANL 388
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ--LV--------- 182
LTR + L + D L L Q LV
Sbjct: 389 ---------------LTRFYDIDEGEIL--LDGHDLRDYTLASLRNQVALVSQNVHLFND 431
Query: 183 --------ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ------- 227
A + S+EQ+ AA + + + F +M
Sbjct: 432 TIANNIAYARTEQYSREQI----------------EEAARMAYAMDFINKMDNGLDTVIG 475
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYKRILVI 284
+ SGG R RIA+ARAL +L+LDE T+ LD ++ ++ +EL+ + LVI
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
|
Length = 582 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 55/226 (24%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI---DIFHLTR---EMPAS---DK 158
L + G ++G +G+GKSTLL ++ P I D H + P S +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 159 SALTCVMEVDEE-----RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ L + V + L+ AEQ D Q + D DRL +
Sbjct: 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE----------- 127
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273
SGG R R+ALAR L +LLLDEP + LD L E
Sbjct: 128 ------------------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL----LRE 165
Query: 274 ELKTY--------KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
E+ +R L++++H + + I + + K+K
Sbjct: 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-KRI-------LV 283
SGG + R+A+ RAL P LLL+DEP LDL + E+ Y +R+ ++
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR----KREILPYLERLRDEINIPIL 183
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
+SHS D + + ++ L+ K+K G
Sbjct: 184 YVSHSLDEVLRLADRVVVLENGKVKASGP 212
|
Length = 352 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 89 KIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTL-LAVLGNREVPVP-- 141
++ N S++F + + EL G G++G +GSGKS L A++G +P P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG--LLPKPNA 60
Query: 142 ---------DHIDIFHLTRE------------MPASDKSALTCVMEVDEERVRLEKLAEQ 180
D D+ L+ + + ++L VM + ++ +AE
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQ------IAEV 114
Query: 181 LVACEDDESQEQLMD-IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239
L S+++ + + L+ + E R + H + SGG R
Sbjct: 115 LRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------------ELSGGMRQ 160
Query: 240 RIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFL 292
R+ +A AL + P LL+ DEPT LD LD L+E + L++I+H +
Sbjct: 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDL---LKELQREKGTALILITHDLGVV 217
Query: 293 NGVCTNII 300
+ +
Sbjct: 218 AEIADRVA 225
|
Length = 316 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 45/195 (23%)
Query: 118 LLGLNGSGKSTL------LAVLGNREVPVPD---HIDIFHLTREMPASDKSALTCVMEVD 168
L+GL+GSGKSTL L + V V D +D+ + D + L
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC-------DAATL------- 100
Query: 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-----ADTAEA----RAANILHGL 219
R+R +++ Q L+ ++++ +A R L +
Sbjct: 101 -RRLRTHRVSMVF-------QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELV 152
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL---- 275
G + +K + SGG + R+ LARA + +LL+DEP + LD L++EL
Sbjct: 153 GLA-QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211
Query: 276 KTYKRILVIISHSQD 290
K+ +V +SH D
Sbjct: 212 SKLKKTIVFVSHDLD 226
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L + +E+ G GL+G GSGKSTL I HL + + +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTL----------------IQHLNGLLKPTSGKIII 66
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYDRLDDI---------SADTAEAR 211
+++ +++V+L + ++ V + QL + I DI S + E R
Sbjct: 67 DGVDITDKKVKLSDIRKK-VGLVFQYPEYQLFEETIEK---DIAFGPINLGLSEEEIENR 122
Query: 212 AANILHGLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDA 267
++ +G E + K + SGG + R+A+A + ++P +L+LDEPT LD D
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 268 CVWLEEEL-KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+ +EL K Y ++++SHS + + + II ++K K + G E F
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
Length = 287 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
I++ + G L+D L L G +LG +G GK+TLL ++ VP H I L
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-VP-YQHGSI-TL 60
Query: 150 TREMPASDKSALTCVMEVDEE----RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
P A V+ +E R + +A L +L +
Sbjct: 61 D-GKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL-----------------QLAGVEK 102
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A +L +G + +++ SGG R R+ +ARAL P LLLLDEP LD
Sbjct: 103 MQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
|
Length = 255 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------RFARYHQHL---------- 473
L+G NG+GKSTLL ++ PS G + ++ FAR +L
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
Query: 474 --HELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
EL+ + P L F DRE++ + I GL + LS G++ R
Sbjct: 101 TVRELVAIGRYPWHGALGRF-GAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWI 158
Query: 532 AYLAWQAPHLLLLDEPTNHLDM-ETIDALA 560
A L Q LLLDEPT+ LD+ +D LA
Sbjct: 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188
|
Length = 265 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 22/225 (9%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR-EVPVPD------ 142
I + ++ +L+ LE+ G + ++G NGSGKSTL A L R + V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLD 201
D+ L+ E A + + V+ V + + + A QE L DR D
Sbjct: 64 GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPL----DRFD 119
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK-DFSGGWRMRIALARALYVKPHLLLLDEPT 260
D E + + L +++ + FSGG + R + + ++P L +LDE
Sbjct: 120 --FQDLMEEK----IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173
Query: 261 NHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHL 302
+ LD+DA + + L+ KR +I++H Q L+ + + +H+
Sbjct: 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 218
|
Length = 248 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-06
Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+KI + +H ++L++ ++ + ++G +G GKSTLL L NR + D +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL-NR---MNDIVSGA 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
L + +++ + ++V R R+ + +Q + + + D + T
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ-----PNPFPKSIFDNVAFGPRMLGTT 115
Query: 208 AEARAANI----LHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLLLLDEPT 260
A++R + L E++ K SGG + R+ +AR L ++P ++L+DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 261 NHLDLDACVWLEE---ELKTYKRILVIISHSQ 289
+ LD + + +EE ELK I ++ + Q
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 47/181 (25%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ +VGPNG GK+T L+ G L P G V +L IS Y Q
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV-----------------DPELKIS---YKPQ 407
Query: 490 SFPEVKDREEM------RKIIGRYG-------LTGRQQV-----CPIRQLSDGQKCRV-V 530
+K + R I G + Q+ ++ LS G+ RV +
Sbjct: 408 ---YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAI 464
Query: 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEE 586
A L+ A L LLDEP+ HLD+E A+A AI E ++V HD +I+ +++
Sbjct: 465 AACLSRDA-DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDR 523
Query: 587 I 587
+
Sbjct: 524 L 524
|
Length = 590 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 41/174 (23%), Positives = 53/174 (30%), Gaps = 46/174 (26%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASD------ 157
LN G + G NG GK+TLL +L P + R+ P +
Sbjct: 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80
Query: 158 ----KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
K L+ E L Q I D L + E A
Sbjct: 81 LPGLKPELS--------------ALENLHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPA 125
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
L S G + R+ALAR + L +LDEPT LD
Sbjct: 126 AQL-----------------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD- 264
+T R ++ LH LG +E++ + SGG + R+A+A + ++P +L+LDEPT LD
Sbjct: 112 ETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 265 ---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK-- 319
+ +L + +TY ++ +H D + + I +DK ++ YG E F +
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
Query: 320 ----TRLEL---------LENQ----MKQYNWEQDQIAHMKNY 345
L+L L+ Q Y +++ + A +K +
Sbjct: 231 LLARVHLDLPSLPKLIRSLQAQGIAIDMAYTYQEAEDAFLKAF 273
|
Length = 277 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 54/242 (22%)
Query: 398 PVIMVQNVS--FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKS-TLLNLIYGDLTPS 454
P++ ++N+S FR + ++ I+ LALVG +G+GKS T L+++ L PS
Sbjct: 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPS 61
Query: 455 VGMVRKNSHLRFARYHQHLHELLDLD----------------------ISPLDYMLQSFP 492
+V + +RF H LL ++PL + +
Sbjct: 62 PPVVYPSGDIRF-----HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY 116
Query: 493 EV----------KDREEMRKIIGRYGLTGRQQVCPIR----QLSDGQKCRVVFAYLAWQA 538
EV R E+ + R G+ RQ + QLS G++ RV+ A
Sbjct: 117 EVLSLHRGMRREAARGEILNCLDRVGI--RQAAKRLTDYPHQLSGGERQRVMIAMALLTR 174
Query: 539 PHLLLLDEPTNHLDMETIDA-----LADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
P LL+ DEPT LD+ ++ A L + + GL+ ++H+ ++ ++A+ + + +NG
Sbjct: 175 PELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
Query: 594 KV 595
+
Sbjct: 234 RC 235
|
Length = 529 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 46/212 (21%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV----------GMVRKNSHLR--- 465
+L + LALVG +G+GKS I G L P + G +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 466 --------------FARYHQHLHE----LLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
H E L L +L++ V + +++ +Y
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV-GLPDPEEVLKKY 122
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAI 563
QLS G RV+ A P L+ DEPT LD+ + L +
Sbjct: 123 PF----------QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
F G++L++HD ++ ++A+E+ + ++G++
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD----ISP--- 483
A+ G +GAGK++L+N I G P G + N + L D + + P
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV-----------LFDAEKGICLPPEKR 76
Query: 484 -LDYMLQS---FPE--VK----------DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
+ Y+ Q FP V+ + KI+ G+ P LS G+K
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSGGEKQ 135
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQV 583
RV AP LLL+DEP LD+ E + L + ++ VSH I ++
Sbjct: 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRL 195
Query: 584 AEEIWICENGKVT 596
A+ + + E GKV
Sbjct: 196 ADRVVVLEQGKVK 208
|
Length = 352 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 89 KIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDH 143
I N S+ FH E ++ ++ G L+G +GSGKS T L++LG P H
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 144 ---------IDIFHLT-REMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193
D+ + R++ + + M E L L +QL
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIG--MIFQEPMTSLNPLHT---------IGKQL 116
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF----SGGWRMRIALARALYV 249
++ +S A ARA +L +G + +K+ + SGG R R+ +A AL
Sbjct: 117 AEVLRLHRGLSRAAARARALELLELVGIPE--PEKRLDAYPHELSGGQRQRVMIAMALAN 174
Query: 250 KPHLLLLDEPTNHLD 264
+P LL+ DEPT LD
Sbjct: 175 EPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 51/241 (21%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEF-----GIDLDTR----LALVGPNGAGKSTLLNLI 447
P ++ V+++ + G ++ R ++ GI L R L LVG +G+GKSTL +
Sbjct: 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLAL 333
Query: 448 YGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRK 502
L PS G +R + Q + L ++ PL +Q + + R + +
Sbjct: 334 LR-LIPSQGEIRFDG--------QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384
Query: 503 IIG------RYGLTG---RQQVC----------PIR-----QLSDGQKCRVVFAYLAWQA 538
II L+ Q+V R + S GQ+ R+ A
Sbjct: 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILK 444
Query: 539 PHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
P L+LLDEPT+ LD + +D L D + +SHD ++ + + + +GK
Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Query: 595 V 595
+
Sbjct: 505 I 505
|
Length = 534 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
++ N ++ + +L D L L G+ L+G NG GKSTLL P + +
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL-------MDIYDR 199
+ P S S+ + RL L + + E +E + + ++ R
Sbjct: 62 ----GDKPISMLSS-------RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR 110
Query: 200 LDDISADTAE-ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
L D A +A + ++ D SGG R R LA L ++LLDE
Sbjct: 111 LSA--EDNARVNQAMEQTR----INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
Query: 259 PTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHL 302
PT +LD++ V L EL T + +V + H LN HL
Sbjct: 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVLHD---LNQASRYCDHL 208
|
Length = 255 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
+ + DV I F+ L++ L G+ G+ G GSGKSTLL+++
Sbjct: 304 SEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI-Q 362
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL-----------EKLAEQLVAC 184
R V + FH ++P + +++D R RL + +A +
Sbjct: 363 RHFDVSEGDIRFH---DIPLTK-------LQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGL-----GFTKEMQQKKTKDFSGGWRM 239
D +Q+++ + AR A++ + G+ E+ ++ SGG +
Sbjct: 413 RPDATQQEIEHV-------------ARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQ 458
Query: 240 RIALARALYVKPHLLLLDEPTNHLD 264
RI++ARAL + +L+LD+ + +D
Sbjct: 459 RISIARALLLNAEILILDDALSAVD 483
|
Length = 569 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
+I +++D+I + +E LG + K +S G + R+A A A ++P +L
Sbjct: 118 EIDEKIDEI-IEFSE---------LG---DFIDLPVKTYSSGMKARLAFAIATALEPDIL 164
Query: 255 LLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L+DE D + C EL + ++++SH + +C + L+K K+++ G
Sbjct: 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 55/184 (29%), Positives = 74/184 (40%), Gaps = 46/184 (25%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHL-TRE 152
G + LQ + G L G +G+GKSTLL ++ E P I DI L RE
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYDR------LDDIS 204
+P L Q+ D LMD +YD + S
Sbjct: 74 VPF---------------------LRRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGAS 110
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPT 260
D R + L +G K K+F SGG + R+ +ARA+ KP +LL DEPT
Sbjct: 111 GDDIRRRVSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
Query: 261 NHLD 264
+LD
Sbjct: 166 GNLD 169
|
Length = 222 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+I N S + G L + L L G L+G NGSGKSTLL + P
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 28/192 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR----------KNSHLRFARYHQHLHELLDL 479
+ L+G +G GKSTL L+ G P+ G V + F R Q + +
Sbjct: 40 VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99
Query: 480 DISPLDYMLQSFPE-------VKDREEMRKIIGRYGLTGRQ----QVCPIRQLSDGQKCR 528
++P + Q E + + E+ +I + G + P RQLS GQ R
Sbjct: 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP-RQLSGGQLQR 158
Query: 529 VVFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGL--VLVSHDFRLINQV 583
+ A P L++LDE ++LDM I L + G + ++HD RL+
Sbjct: 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSF 217
Query: 584 AEEIWICENGKV 595
+ + + + G++
Sbjct: 218 CQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
KE +++ SGG + +A+ARAL +P LLLLDEP+
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 372 NQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLA 431
Q T V + +PS G++ VQ ++ +Y++ G + ++L F ++ R+
Sbjct: 1195 YQLSTVLVIENPHAQKCWPSGGQM-----DVQGLTAKYTEAGRAVLQDLSFSVEGGQRVG 1249
Query: 432 LVGPNGAGKSTLLN 445
L+G G+GKSTLL+
Sbjct: 1250 LLGRTGSGKSTLLS 1263
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 59/210 (28%), Positives = 82/210 (39%), Gaps = 89/210 (42%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLL---NLIYGD 450
P I V++++ Y D L I+LD AL+GP+G GKSTLL N + D
Sbjct: 6 PAIEVRDLNLYYGD-----KHAL-KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-D 58
Query: 451 LTPS---------------------------VGMVRKNSHLRFAR-------------YH 470
L P VGMV F + Y
Sbjct: 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMV-------FQKPNPFPMSIYDNVAYG 111
Query: 471 QHLHELLDLDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
LH + D + LD +++S + EVKDR + + L LS
Sbjct: 112 LRLHGIKDKE---LDEIVESSLKKAALWDEVKDR------LHKSALG----------LSG 152
Query: 524 GQKCRVVFAY-LAWQAPHLLLLDEPTNHLD 552
GQ+ R+ A LA + P +LL+DEPT+ LD
Sbjct: 153 GQQQRLCIARALAVK-PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 59/268 (22%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P+I ++N S Y + +N+ I + A++GP+G GK+TLL I
Sbjct: 2 PIIEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN--------- 50
Query: 458 VRKNSHLRFARYHQHLH--------ELLDLDI----------SPLDYMLQSFPEV----- 494
R N H+ R ++ LD+ P + + + V
Sbjct: 51 -RMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109
Query: 495 ----KDREEMRKIIGR-------YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543
K + ++ +I+ + + P +LS GQ+ R+ A P ++L
Sbjct: 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 544 LDEPTNHLD---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LDEPT+ LD + I+ L + +++ +V+V+H+ ++A+ I + G
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSENY-TIVIVTHNIGQAIRIADYI-------AFMYRG 221
Query: 601 NILDYKETLRAKVLKEKNK-SAAVSNGK 627
+++Y T R V + KNK + GK
Sbjct: 222 ELIEYGPT-REIVERPKNKLTEEYLTGK 248
|
Length = 250 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
TF G + L D + G+ + L+G NG+GKSTLL +L P I I
Sbjct: 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68
Query: 152 EMPASDKSALTC-VMEVDEERVRLEKLAEQLVACEDDESQEQLM--DIYDRLDDISADTA 208
AS +AL V + +E L + E VA E L + + ++
Sbjct: 69 RF-ASTTAALAAGVAIIYQE---LHLVPEMTVA-------ENLYLGQLPHKGGIVNRRLL 117
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL---DL 265
A L LG + K S G R + +A+AL ++ DEPT+ L ++
Sbjct: 118 NYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176
Query: 266 DACVWLEEELKTYKRILVIISHSQD 290
+ + EL+ R+++ +SH +
Sbjct: 177 EQLFRVIRELRAEGRVILYVSHRME 201
|
Length = 501 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL----DACVWLEEELKTYKRILVIISHSQ 289
SGG + R+A+ RAL P LLL+DEP LDL + +LE + ++ +SHS
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189
Query: 290 DFLNGVCTNIIHLDKRKLKYYG 311
D + + ++ L++ K+K +G
Sbjct: 190 DEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I++ NVS+ Y+ P+ ++ N + ++G G+GKST++ L G + G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 457 M--------------VRKNSHLR--------FARYHQHLHELLDLDIS--PLDYMLQSFP 492
+++ LR F Y Q E ++ DI+ P++
Sbjct: 67 QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY-QLFQETIEKDIAFGPVNLGENKQE 125
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
K E+ K++ ++ P +LS GQK RV A + + L+LDEPT LD
Sbjct: 126 AYKKVPELLKLVQLPEDYVKRS--PF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
Query: 553 METIDALADAINDFE-------GGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + D IN FE +++V+H+ + ++A+E+ + GKV
Sbjct: 183 PKGEE---DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
|
Length = 289 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY- 278
+ K + SGG + RI+L R L P +LLLDE T+ LD + E + Y
Sbjct: 125 ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184
Query: 279 --KRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
+ I V+ ++H +D +N +I L + YE
Sbjct: 185 REQNIAVLWVTHDKDEINH-ADKVITLQPHAGEMQEARYE 223
|
Length = 225 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
S G R+ALARAL LLLLDEPT LD
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARAL V+P +LL+DEP + LD A +EE ELK I +I++H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTI-IIVTHN 207
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA 155
TF G + L LE+ G GL G NG+GKSTL+ +L +I+ + A
Sbjct: 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM---DIYDRLDDISADTAEARA 212
S+ D ER + + ++L + E + +I ++ + RA
Sbjct: 70 SNIR--------DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA 121
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL---DLDACV 269
N+L L + + D+ GG + + +A+AL + LL+LDEP++ L + + +
Sbjct: 122 KNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181
Query: 270 WLEEELKTYKRILVIISHSQDFLNGVCTNI 299
+ +LK + V ISH + + VC I
Sbjct: 182 DIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 209 EARAANILHGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
E R N L E++ + + SGG + R+ +ARAL P +LL DEPT+ LD
Sbjct: 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP 194
Query: 266 DACVWLEE---ELKTYKRILVIISHSQ 289
A +EE +LK IL++ + Q
Sbjct: 195 IATASIEELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 47/209 (22%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I+V +V+ + + G R+ F + + ALVG NG+GKSTL + +G
Sbjct: 5 AGIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKAL-------MGF 56
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTG 511
VR + + + Q + L ++ + Y+ QS FP + + M +GRYG G
Sbjct: 57 VRL-ASGKISILGQPTRQALQKNL--VAYVPQSEEVDWSFPVLVEDVVM---MGRYGHMG 110
Query: 512 ---------RQQVCP--------------IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
RQ V I +LS GQK RV A Q ++LLDEP
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 549 NHLDMET---IDALADAINDFEGGLVLVS 574
+D++T I +L + D EG +LVS
Sbjct: 171 TGVDVKTEARIISLLRELRD-EGKTMLVS 198
|
Length = 272 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 57/230 (24%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V N +F ++ D P + F I +A+VG G GKS+LL+ + ++ G V
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696
Query: 460 --------------KNSHLR----FA------RYHQHLHE---LLDLDISPLDYMLQSFP 492
+N LR F Y Q L L DL+I P
Sbjct: 697 MKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILP--------- 747
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
DR E IG G+ LS GQK RV A + + L D+P + +D
Sbjct: 748 -SGDRTE----IGEKGV----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
Query: 553 METIDALADAINDFEGGL-----VLVSHDFRLINQVAEEIWICENGKVTK 597
+ + + EG L +LV+H + QV + I + GK+++
Sbjct: 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISE 841
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYKRILVIISHSQ 289
SGG + R+ +AR L V+P +LLLDEPT+ LD A +E +EL+ I+++ + Q
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
|
Length = 286 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+ALARAL +KP +LL DEP ++LD
Sbjct: 138 SGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL---- 282
+ SGG + R+A+ RAL P LLL+DEP LD + E+ Y L
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP----RKYEILPYLERLHAEF 181
Query: 283 ----VIISHSQD 290
+ +SHS
Sbjct: 182 GIPILYVSHSLQ 193
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 46/224 (20%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
+ V +VS + F I +G +G+GKSTLL I + P+ G
Sbjct: 36 QTVGVNDVSLD-------VREGEIFVI--------MGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 457 ------MVRKNSH--LRFARYH------QH---LHELLDLDISPLDYMLQSFPEVKDREE 499
+ S LR R Q L L+ +Q P + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREER 140
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----MET 555
+ + GL G + P +LS G + RV A P +LL+DE + LD E
Sbjct: 141 AAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 556 IDALADAINDFEGGLVLVSHD----FRLINQVAEEIWICENGKV 595
D L + + +V ++HD RL +++A I ++G++
Sbjct: 200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIA----IMKDGRL 239
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 47/208 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
+ RN+ ++ + L GP+G+GKSTLL +Y + P G + +H E
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV----------RHEGE 75
Query: 476 LLDL---------------------------DISPLDYMLQ-----SFPEVKDREEMRKI 503
+DL +S LD + + P R + +
Sbjct: 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADL 135
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH-LLLLDEPTNHLDMETIDALADA 562
+ R L R S G++ RV A + + +LLLDEPT LD + +
Sbjct: 136 LTRLNLPERLWSLAPATFSGGEQQRVNIAR-GFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 563 INDFEG---GLVLVSHDFRLINQVAEEI 587
I + + LV + HD + VA+ +
Sbjct: 195 IREAKARGAALVGIFHDEEVREAVADRL 222
|
Length = 235 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 25/181 (13%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+ N S+ G LL + + G L+G +G GKSTLL+ + L
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG------------AL 52
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC--EDDESQEQLMDIYDRLDDISADT 207
+ + + + ++E+R+ + A++ + +D L + L + A
Sbjct: 53 AGQFSCTGE------LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106
Query: 208 ---AEARAAN-ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
A AAN L G + SGG R R+AL RAL +P LLLDEP + L
Sbjct: 107 KGNARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRL 165
Query: 264 D 264
D
Sbjct: 166 D 166
|
Length = 213 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+ALARAL +P LLLLDEP LD
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALD 165
|
Length = 257 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 56/212 (26%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMV--------RKNSHLRFAR-- 468
G+ L+ ++G NG GK+TLL + G L G + + H R
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77
Query: 469 -Y---------HQHLHELLDLDISPL--------DYMLQSFPEVKDREEMRKIIGRYG-- 508
Y + E L ++ L D + + FP +K EM GR G
Sbjct: 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLK---EML---GRRGGD 131
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-- 566
L+G QQ +QL+ R L + P LLLLDEPT + I + I
Sbjct: 132 LSGGQQ----QQLAIA---RA----LVTR-PKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 567 EGGL--VLVSHDFRLINQVAEEIWICENGKVT 596
EGG+ +LV ++A+ ++ E G+V
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVV 211
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 400 IMVQNVSFRYSDDGPWIY---RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I NVS+ Y P+ + ++ + A+VG G+GKSTL+ I L P+ G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 457 MVR----------KNSHLRFARYH----------QHLHELLDLDI--SPLDYMLQSFPEV 494
V K+ ++R R Q + ++ +I P ++ + + EV
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKM-NLDEV 121
Query: 495 KDREEMRKIIGRYGLTGR-QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
K+ +++ G + P Q+S GQ ++ + P +++LDEPT LD
Sbjct: 122 KNYA--HRLLMDLGFSRDVMSQSPF-QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
Query: 554 ETIDALADAINDFE----GGLVLVSHDFRLINQVAEEIWICENGKV 595
++ + + + ++LVSHD + + A+E+ + + G +
Sbjct: 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 69/236 (29%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPS 454
++ Q+V+ Y D NL+ T AL+GP+G GK+T L I DLTP
Sbjct: 2 TLLLSAQDVNIYYGDKQAVKNVNLDVQ--RGTVNALIGPSGCGKTTFLRAINRMHDLTPG 59
Query: 455 ---------------------------VGMVRKN--------------SHLRFA--RYHQ 471
VGMV + + L+ A R
Sbjct: 60 ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRD 119
Query: 472 HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
HL E+ + + + EVKDR + P LS GQ+ R+
Sbjct: 120 HLMEVAERSLRGAAL----WDEVKDRLK----------------TPATGLSGGQQQRLCI 159
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDFRLINQVAE 585
A P +LL+DEPT+ LD + + D + D + +++V+H+ +V++
Sbjct: 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 46/194 (23%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDIS 482
++GPNG GK+T + ++ G+L P++G + R + +L + +I
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161
Query: 483 P------LDYMLQSF-----------------PEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+D + + F EV +R + I+ R I
Sbjct: 162 VVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDR----------DIS 211
Query: 520 QLSDGQKCRV-VFAYLAWQAPHLLLLDEPTNHLDM-ETIDALADAINDF-EGGLVL-VSH 575
+LS G+ RV + A L A DEPT++LD+ + ++ A I + EG VL V H
Sbjct: 212 ELSGGELQRVAIAAALLRDA-DFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVVEH 269
Query: 576 DFRLINQVAEEIWI 589
D +++ +A+ + I
Sbjct: 270 DLAVLDYLADNVHI 283
|
Length = 590 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 58/195 (29%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSV 455
P++ V ++S Y+ +L+F + T AL+GP+G+GKSTLL I DL P V
Sbjct: 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEIT--ALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 456 ---GMVRKNSH-----------LR--------------FARYHQHLHELL---DLDISPL 484
G + N H LR + Y ++ L D L
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVL 121
Query: 485 DYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
D ++ + EVKDR + GL+G GQ+ RV A +
Sbjct: 122 DEAVEKSLKGASIWDEVKDRLHDSAL----GLSG------------GQQQRVCIARVLAT 165
Query: 538 APHLLLLDEPTNHLD 552
+P ++LLDEPT+ LD
Sbjct: 166 SPKIILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
SGG + R+ +AR + ++P ++L+DEPT+ LD A +EE ++ K+ +VI++HS
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203
|
Length = 249 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 46/194 (23%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L+G +G GKST L L NR + D I + E+ K+ ++V E R R+ +
Sbjct: 35 LIGPSGCGKSTFLRCL-NR---MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMV 90
Query: 178 AEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ------KKT- 230
++ M IYD + A I HG+ KE+ + KK
Sbjct: 91 FQK--------PNPFPMSIYDNV---------AYGPRI-HGIKDKKELDKIVEWALKKAA 132
Query: 231 -----KD--------FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---E 274
KD SGG + R+ +AR + VKP ++L+DEPT+ LD + + +E+ E
Sbjct: 133 LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192
Query: 275 LKTYKRILVIISHS 288
LK I VI++H+
Sbjct: 193 LKKEYTI-VIVTHN 205
|
Length = 251 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME----VD 168
G +LG +GSGKSTLL L R I + T + A+++ +++ V
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGR-------IQGNNFTGTILANNRKPTKQILKRTGFVT 146
Query: 169 EERVRLEKLA--EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
++ + L E LV C S +L + + I A +++ LG TK
Sbjct: 147 QDDILYPHLTVRETLVFC----SLLRLPKSLTKQEKILV------AESVISELGLTKCEN 196
Query: 227 QKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
F SGG R R+++A + + P LL+LDEPT+ LD A L L +
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251
|
Length = 659 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ ++N++F YS P + N + R+ALVG +G+GKST+ L+ G P G +
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE-----LKTYKRILVIIS 286
+ SGG R RI +ARALY +++ LD+P + LD+ L +E L+ KR LV+++
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 287 HSQDFL 292
H +L
Sbjct: 200 HKLQYL 205
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+VSF Y + + ++ F +A+VGP GAGKSTL+NL+ P G +
Sbjct: 338 DDVSFSYDNSRQGVE-DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393
|
Length = 588 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 209 EARAANILHGLGFTKEMQQK-KTKDF--SGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
R L G E++ K K F SGG + R+ +ARA+ V P +LL+DEP + LD
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179
Query: 266 DACVWLEEELKTYKR--ILVIISHS 288
+ +EE + K+ +VI++H+
Sbjct: 180 ISTAKVEELIHELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-05
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
+++ N S + L D L + G YGLLG NG+GK+TL+ ++
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKII 46
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 51/236 (21%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI--FHLTREMPAS 156
G E L+D + G L G +G+GKSTLL ++ E P I + L+R +
Sbjct: 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR-LKGR 72
Query: 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYD------RLDDISADTA 208
+ L + V + RL L D +Y+ R+
Sbjct: 73 EIPFLRRQIGVVFQDFRL------------------LPDRTVYENVALPLRVIGKPPREI 114
Query: 209 EARAANILH--GLGFTKEMQQKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPTNH 262
R + +L GL K + SGG + R+A+ARA+ +P +LL DEPT +
Sbjct: 115 RRRVSEVLDLVGLK-------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 263 LDLDACVWLEEELKTYKRI------LVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
LD D E ++ ++ I +++ +H + +N + ++ L+ +L
Sbjct: 168 LDPDLS---WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/197 (28%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 90 IANFSITF-HGCELLQ---DTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDHI 144
I N S+ F + D L++ G L+G +GSGKS T L++L R +P P +
Sbjct: 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVV 65
Query: 145 ----DIFHLTREMPASDKSALTCV------MEVDEERVRL------EK-LAEQLVACEDD 187
DI + + + L V M E V L EK L E L
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
+ +I + LD + A R + H L SGG R R+ +A AL
Sbjct: 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQL--------------SGGERQRVMIAMAL 171
Query: 248 YVKPHLLLLDEPTNHLD 264
+P LL+ DEPT LD
Sbjct: 172 LTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S + A+ +A ++ +G +E+ + + SGG R+A+A L ++P +L+LDEPT
Sbjct: 116 VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 263 LD 264
LD
Sbjct: 176 LD 177
|
Length = 290 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 58/243 (23%), Positives = 93/243 (38%), Gaps = 59/243 (24%)
Query: 398 PVIMVQNVSFRYSDDG-----PW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
++ V +S Y+ G + N+ + +AL+G +G GKSTL L+ G
Sbjct: 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61
Query: 451 LTPSVGMVR----------KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500
+PS G V + F R Q + + S V R+ +
Sbjct: 62 ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQ-------------DSISAVNPRKTV 108
Query: 501 RKIIG---RYGLT----GRQ-----------------QVCPIRQLSDGQKCRVVFAYLAW 536
R+II R+ L+ R P QLS GQ RV A
Sbjct: 109 REIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALA 167
Query: 537 QAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICEN 592
P LL+LDE ++LD+ I L F + ++HD RL+ + + + + +N
Sbjct: 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227
Query: 593 GKV 595
G++
Sbjct: 228 GQI 230
|
Length = 268 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 61/191 (31%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
P++ ++ +S + DG + N +DL L L+GP+G GK+T+L LI G T
Sbjct: 12 SPLVELRGISKSF--DGKEVISN----LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDIS-------PLDYMLQS---FP---------- 492
P G + + DI+ ++ + QS FP
Sbjct: 66 PDSGRIMLDGQ----------------DITHVPAENRHVNTVFQSYALFPHMTVFENVAF 109
Query: 493 ----------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
E+ R E +++ R+ QLS GQ+ RV A P +
Sbjct: 110 GLRMQKTPAAEITPRVMEALRMVQLEEFAQRK----PHQLSGGQQQRVAIARAVVNKPKV 165
Query: 542 LLLDEPTNHLD 552
LLLDE + LD
Sbjct: 166 LLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E+L+ L++ G ++G +GSGKSTL+ +LG L + + + A
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILG-------------CLDKPTSGTYRVA 68
Query: 161 LTCVMEVDEE---RVRLE---------KLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
V +D + ++R E L L A Q +++ +
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTA-------AQNVEVPAVYAGLERKQR 121
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
RA +L LG ++ + ++ SGG + R+++ARAL ++L DEPT LD
Sbjct: 122 LLRAQELLQRLGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---Y------- 448
I +NV+F Y + P + RN+ F I +ALVG +G+GKST+ NL+ Y
Sbjct: 342 IEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 449 ------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYM 487
L V +V +N HL +AR Q+ E I M
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSRE----QIEEAARM 456
Query: 488 LQSFPEVKDREE-MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLD 545
+ + + + +IG G+ LS GQ+ R+ A L +P +L+LD
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVL----------LSGGQRQRIAIARALLRDSP-ILILD 505
Query: 546 EPTNHLDMETIDALADAINDFEGG-LVLV-SHDFRLINQVAEEIWICENGKV 595
E T+ LD E+ A+ A+++ + LV +H I + A+EI + E+G++
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEI 556
|
Length = 582 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 44/223 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-----NREVPVPD 142
+++++ S+ ++ + L L+ L+G +GSGKSTLL + N EV +
Sbjct: 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG 65
Query: 143 HI------------DIFHLTREMPASDKSALTCVMEVDEERV---RLEKLAEQLVACEDD 187
I D L +E+ + M + E V RL+ + ++ V E
Sbjct: 66 SIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
E + I+D + D D+A LG SGG + R+ +AR L
Sbjct: 126 EKSLKGASIWDEVKDRLHDSA----------LGL------------SGGQQQRVCIARVL 163
Query: 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
P ++LLDEPT+ LD + +EE L K +++++ S
Sbjct: 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +ARA+ V+P ++L+DEP + LD + + +EE + K ++I++H
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARAL P +LL+DEPT+ LD + +EE +LK K +VI++H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN 213
|
Length = 259 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR----ILVIISH 287
+FSGG R R+ +A AL +P LL+ DEPT LD+ + L KR +++I+H
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
Query: 288 SQDFLNGVCTNII 300
+ G+C ++
Sbjct: 221 DLGVVAGICDKVL 233
|
Length = 330 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG + R+ +AR + ++P +LLLDEP + LD + +EE ELK + VI++H
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTV-VIVTH 213
|
Length = 260 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 58/205 (28%), Positives = 77/205 (37%), Gaps = 38/205 (18%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--DIFHLTREMPASDKSALTCVMEVDEE 170
G ++G NG GKSTLL L P H+ D H+ AS + A
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY--ASKEVAR--------- 81
Query: 171 RVRLEKLAEQLVACEDDESQE---------QLMDIYDRLDDISADTAEARAANILHGLGF 221
R+ LA+ D QE Q + R +D A T +A I H
Sbjct: 82 --RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR- 280
+ + SGG R R +A L + ++LLDEPT LD+ + L E L R
Sbjct: 136 ---LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 281 ---ILVIISHSQDFLNGVCTNIIHL 302
L + H LN C HL
Sbjct: 193 KGYTLAAVLHD---LNQACRYASHL 214
|
Length = 265 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 4e-05
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
N S+ G LL D L L G +LG NG+GKSTLL L
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL 48
|
Length = 258 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPS--VGMVRKNSH------LR---FARYHQHLHELLD 478
LA++GP+G+GKSTLLN + G + + G + N+ L+ F L+ L
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156
Query: 479 LDISPLDYMLQSFPEVKDREE----MRKIIGRYGLTGRQQVCP----IRQLSDGQKCRVV 530
+ + + L P+ ++E +I GLT + IR +S G++ RV
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216
Query: 531 FAYLAWQAPHLLLLDEPTNHLD 552
A+ P LL+LDEPT+ LD
Sbjct: 217 IAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 55/186 (29%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKST---LLAVL-----GNREVPVPDHIDIFHLTREM 153
L+++ L L G+R L+G +GSGKST L+A L G E+ D I + RE+
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG--EILF-DGIPREEIPREV 550
Query: 154 PASDKSALTCVMEVDEE------RVRLEKLA--------EQLV-ACEDDESQEQLMDIYD 198
A+ V VD++ VR + L LV AC+D + +
Sbjct: 551 LAN------SVAMVDQDIFLFEGTVR-DNLTLWDPTIPDADLVRACKDAAIHDVITSRPG 603
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
D A+ AE AN SGG R R+ +ARAL P +L+LDE
Sbjct: 604 GYD---AELAEG-GAN------------------LSGGQRQRLEIARALVRNPSILILDE 641
Query: 259 PTNHLD 264
T+ LD
Sbjct: 642 ATSALD 647
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 49/177 (27%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVP------------VPDHIDIF 147
LL+D + + G+ +LG GSGKSTLL ++L E+ VP I
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWI- 732
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
M A+ + ++ DEE +LA+ + + + AD
Sbjct: 733 -----MNATVRGN---ILFFDEEDA--ARLADAVRVSQ-----------------LEADL 765
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A+ G G E+ +K + SGG + R++LARA+Y + LLD+P + LD
Sbjct: 766 AQL-------GGGLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 59/256 (23%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ F+ + L I + ++G NGAGKSTLLN I GDL P+ G
Sbjct: 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62
Query: 458 V--------RKNSH---LRFARYHQHLHELLDLDISPLDYMLQSFPEV---------KDR 497
+ +K+ AR Q D + + PE+ + R
Sbjct: 63 ILIDGVDVTKKSVAKRANLLARVFQ-------------DPLAGTAPELTIEENLALAESR 109
Query: 498 EEMRKIIGRYGLTGRQQV----------------CPIRQLSDGQKCRVVFAYLAWQAPHL 541
+ R + R I LS GQ+ + P +
Sbjct: 110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI 169
Query: 542 LLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
LLLDE T LD +T ++ A + + + ++V+H+ + + +GK+
Sbjct: 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI-- 227
Query: 598 WEGNILDYKETLRAKV 613
+LD +A +
Sbjct: 228 ----VLDVTGEEKASL 239
|
Length = 263 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ K SGG + R+ +ARA+ ++P +LL+DEPT+ LD A +EE ELK K
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-K 274
Query: 280 RILVIISHS 288
++I++HS
Sbjct: 275 YSIIIVTHS 283
|
Length = 329 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARA+ V P ++L+DEP + LD A +EE EL+ I VI++HS
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTI-VIVTHS 221
|
Length = 267 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 23/212 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+K+ N ++ + + L++ +++ L+G +G GKST + L NR + D I
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NR---MNDLIKNC 68
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLD 201
+ ++ + + E D + V L K + + M IYD R+
Sbjct: 69 RIEGKVSIEGED----IYEPDVDVVELRKNVGMVF----QKPNPFPMSIYDNVAYGPRIH 120
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDE 258
+ + N L E + SGG + R+ +AR L VKP ++L DE
Sbjct: 121 GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 259 PTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
PT+ LD + +E+ + K+ +VI++H+
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 51/192 (26%)
Query: 120 GLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178
G NG+GK+T++ A+ + LT E+P + K KL
Sbjct: 29 GQNGAGKTTIIEALK-------------YALTGELPPNSKG-----------GAHDPKLI 64
Query: 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEA-RAANILHGLGFTKEMQQKK----TKDF 233
E + ++ + R+ IL + F + + +
Sbjct: 65 R---------EGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGR 115
Query: 234 -SGGWRM------RIALARALYVKPHLLLLDEPTNHLDLDACVW-LEEELKTYKRI---- 281
SGG ++ R+ALA +L LDEPT +LD + L E ++ K
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 282 LVIISHSQDFLN 293
L++I+H ++ ++
Sbjct: 176 LIVITHDEELVD 187
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 396 PPPVIMVQNVSFRYSDDGP-WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
P++ V+ ++ Y GP R++ F + L +VG +G+GK+TLLN + L P
Sbjct: 3 DQPLLSVRGLTKLY---GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD 59
Query: 455 VGMVR 459
G V
Sbjct: 60 AGEVH 64
|
Length = 258 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV--- 458
V + F Y D + + + F + L L G NGAGK+TLL LI G L P G +
Sbjct: 4 VIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 459 RKNSHLRFARYHQHL----HEL-LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
R++ Y + L H ++ ++ + L + ++ + L
Sbjct: 62 RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-EHL 120
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE---GGL 570
P LS GQK +V L L LLDEP LD ++ + I + G +
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 571 VLVSH 575
+L SH
Sbjct: 181 LLTSH 185
|
Length = 200 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRIL 282
+K K SGG R R+A+ R L +P + LLDEP ++LD V + E+ K R +
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 283 VIISHSQ 289
+ ++H Q
Sbjct: 188 IYVTHDQ 194
|
Length = 369 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ ++ VSF + I+ N+ + A++GP+G GK+TLL LI G + P G +
Sbjct: 7 LVDMRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 459 RKNSHLRFARYHQHLHEL------------LDLDISPLD---YMLQ---SFPEVKDREEM 500
+ A L+ + L D++ D Y L+ P +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+ GL G ++ P +LS G R A P L++ DEP D T+ L
Sbjct: 125 MMKLEAVGLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183
Query: 561 DAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
I++ L V+VSHD + +A+ +I + K+
Sbjct: 184 KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222
|
Length = 269 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I++ +VS+ Y I ++ I ++++ +VG +G+GKSTL L+ G G +
Sbjct: 474 IVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
Query: 460 KNSHL--RFARY--HQHL----HELLDLDISPLD-YMLQSFPEVKDRE--------EMRK 502
N R+ Q + E S L+ +L + V E E++
Sbjct: 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592
Query: 503 IIGRYGLTGRQQVCPIR--QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----I 556
I L G Q +S GQK R+ A +L+LDE T++LD T +
Sbjct: 593 DIENMPL-GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651
Query: 557 DALADAINDFEGGLVLVSHDFRL-INQVAEEIWICENGKV 595
+ L +N + ++ V+H RL + + +++I + ++GK+
Sbjct: 652 NNL---LNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKI 686
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR-- 280
K+ + SGG + R+ +AR L VKP ++LLDEPT+ LD + +E L +
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 281 ILVIISHS 288
+++++HS
Sbjct: 199 TIILVTHS 206
|
Length = 252 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P++ +QNV + I N+ F + + GP+G GKSTLL ++ ++P+ G
Sbjct: 6 PLLQLQNVGYLA--GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT 63
Query: 458 V----RKNSHLRFARYHQHLHELLDLDISPLDYMLQS-------------FP-----EVK 495
+ S L+ Y Q + Y Q+ FP +
Sbjct: 64 LLFEGEDISTLKPEIYRQQ-----------VSYCAQTPTLFGDTVYDNLIFPWQIRNQQP 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
D + R+ L I +LS G+K R+ P +LLLDE T+ LD
Sbjct: 113 DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 25/173 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L LE+ G ++G NG+GKSTLL + P D +D+ +
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA----- 76
Query: 158 KSALTCVMEVDEERV---RLEKLAEQLVACED---DESQEQLMDIYDRLDDISADTAEAR 211
K A RV L A +L E+ ES+ + + L++ + R
Sbjct: 77 KRANLLA------RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A + GLG + + SGG R ++L A P +LLLDE T LD
Sbjct: 131 LARL--GLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 194 MDIYD------RLDDISADTAEARAANILHGLGFTKEMQQK---KTKDFSGGWRMRIALA 244
M I+D RL+ D + R + L G E++ K SGG + R+ +A
Sbjct: 103 MSIFDNVAFGLRLNRYKGDLGD-RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
RA+ +P +LLLDEP + LD A +EE + K+ + +++H+
Sbjct: 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN----LIYGDLTPSV 455
+ V++++ +Y++ G + N+ F I R+ L+G G+GKSTLL+ L+ + +
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQI 62
Query: 456 GMVRKNSHLRFARYHQH---LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
V NS + ++ + + + + + L + + D EE+ K+ GL
Sbjct: 63 DGVSWNS-VPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD-EEIWKVAEEVGLKSV 120
Query: 513 QQVCPIRQ----------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ P + LS G K + A +LLLDEP+ HLD T +
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ N S ++ G L++ L + G G++G NGSGKSTL L P +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-- 59
Query: 147 FHLTREMPASDKSALTCVMEV------DEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
L + D S L + ++ + E + + E+ +A + ++I R+
Sbjct: 60 --LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV 117
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
D A+ GL + + + K SGG +ALA L ++P L+ DE T
Sbjct: 118 DRALAEI----------GLE---KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164
Query: 261 NHLDLDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ LD D+ + + E +K +V I+H+ + L+ II +D+ K+ G
Sbjct: 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A AR A +L +G E + +FSGG R RI +ARAL + P +++ DE + LD+
Sbjct: 437 KAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496
|
Length = 623 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFE 567
R V P QLS G RV+ A P LL+ DEPT LD+ + I+ L +
Sbjct: 146 RLDVYP-HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
Query: 568 GGLVLVSHDFRLINQVAEEIWICENGKV 595
LVL++HD L+ + A +I + G+V
Sbjct: 205 MALVLITHDLALVAEAAHKIIVMYAGQV 232
|
Length = 326 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIIS 286
K SGG + RIA+ARAL +P +LLLDE T+ LD ++ +E+ + K + ++ I+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 287 H 287
H
Sbjct: 1417 H 1417
|
Length = 1466 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134
L+D E+ G R GL+G NG+GKSTLL +L
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 34/220 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N+ +Y R + F + L+GPNGAGK+T + ++ L P+ G
Sbjct: 1 IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 460 KNSH--LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR-YGLTGRQQVC 516
H +R R + ++ D+S +D E+ E + I R YG+ G ++
Sbjct: 59 VAGHDVVREPREVRRRIGIVFQDLS-VD------DELTGWENL-YIHARLYGVPGAERRE 110
Query: 517 PIRQL-----------------SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
I +L S G + R+ A P +L LDEPT LD +T +
Sbjct: 111 RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 560 ADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ I +F ++L +H Q+ + + I ++G++
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
S+ + A +L LG K + + SGG + R+ALARA +P +L DEPT +L
Sbjct: 119 SSRQSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNL 177
Query: 264 D 264
D
Sbjct: 178 D 178
|
Length = 228 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 39/247 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D L+ G GL+G+NGSGKSTL ++G P +D ++
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD------------RNGEV 87
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
V+ + L+ QL E+ E + M + +I A T + + F+
Sbjct: 88 SVIAISA------GLSGQLTGIENIEFKMLCMGFKRK--EIKAMTPKI--------IEFS 131
Query: 223 K--EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKT 277
+ E + K +S G R ++ + + V P +L++DE + D C+ E K
Sbjct: 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG------NYEAFCKTRLELLENQMKQ 331
+ + +SH+ + CT I ++ KLK YG YEAF + + + K+
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKE 251
Query: 332 YNWEQDQ 338
+ + D+
Sbjct: 252 FRNKLDE 258
|
Length = 264 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 25/191 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV-------------------RKNSHLRFARYH 470
++G +G+GKST++ L+ + P+ G V RK + F +
Sbjct: 57 FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
H + LD + L + RE+ + + GL P +LS G + RV
Sbjct: 117 LMPH-MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSGGMRQRVG 174
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LL+DE + LD E D L + +V +SHD ++ +
Sbjct: 175 LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234
Query: 587 IWICENGKVTK 597
I I +NG+V +
Sbjct: 235 IAIMQNGEVVQ 245
|
Length = 400 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--------KTYKRILVII 285
SGG + RI+LARA+Y + LLD+P + +D + E KT RILV
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT--RILV-- 184
Query: 286 SHSQDFL 292
+H L
Sbjct: 185 THQLQLL 191
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS--VGM 457
I + ++ Y + +L I+ LAL+G +G GK+TLL I G + + G
Sbjct: 6 IRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR 63
Query: 458 V-------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
+ ++ L F Y H L D Q P+ E + +
Sbjct: 64 IAIADRDLTHAPPHKRGLALLFQNYALFPH-LKVEDNVAFGLRAQKMPKADIAERVADAL 122
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METID 557
GL P QLS G + R+ A P +LLLDEP + LD E I
Sbjct: 123 KLVGLGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181
Query: 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
AL + + + ++ V+HD +A++ I ++G++
Sbjct: 182 ALHEELPELT--ILCVTHDQDDALTLADKAGIMKDGRL 217
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 27/189 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFARYHQHL--HEL 476
+AL+GP+G+GK+TLL +I G + G +R ++ + F H L H
Sbjct: 31 VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90
Query: 477 LDLDISPLDYMLQSFP--EVKDREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVV 530
+ +I+ + L P E + ++ + + L P QLS GQK RV
Sbjct: 91 VFDNIA---FGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-AQLSGGQKQRVA 146
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LLLDEP LD E L + + V V+HD +VA+
Sbjct: 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADR 206
Query: 587 IWICENGKV 595
+ + G +
Sbjct: 207 VVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 409 YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHL 464
S DG + L F + R+ALVGP+GAGK++LLN + G L P G ++ N L
Sbjct: 358 LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416
Query: 465 RFARYHQHL 473
+ +HL
Sbjct: 417 DPESWRKHL 425
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G +L D L + + ++G++GSGKSTL +L I + + D+
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG--FSLKDIDR 543
Query: 159 SAL-TCVMEVDEERVR-----LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
L + + +E LE L L+ +++ SQ+++ + + AE +
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENL---LLGAKENVSQDEI--------WAACEIAEIKD 592
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
LG+ E+ ++ + SGG + RIALARAL +L+LDE T++LD
Sbjct: 593 DIENMPLGYQTELSEEGS-SISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH-------IDIFHLTREMPASD 157
D E G+ ++G G+GK+TL+ +L + V P IDI +TRE S
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVTRE---SL 407
Query: 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN--I 215
+ ++ V + + + + E + + + E++ + A+A AA+ I
Sbjct: 408 RKSIATVFQ--DAGLFNRSIRENIRLGREGATDEEVYE-----------AAKAAAAHDFI 454
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
L + ++ SGG R R+A+ARA+ +L+LDE T+ LD++ ++ +
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
Query: 276 KTYK--RILVIISH 287
+ R II+H
Sbjct: 515 DALRKNRTTFIIAH 528
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG + R+ +ARA+ V+P +LL+DEP + LD + + +E+ ELK I VI++H
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTI-VIVTH 205
|
Length = 258 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQD 290
SGG + R+ +AR L ++P ++L+DEPT+ LD + + +EE ELK I +I++H+
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSI-IIVTHNMQ 227
Query: 291 -----------FLNG 294
FLNG
Sbjct: 228 QAARISDKTAFFLNG 242
|
Length = 271 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDH---- 143
N + ++ +++ D LE+N G GLLG NG+GK+T ++G + PD
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG---LVRPDSGKIL 62
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYD-RL 200
+D +T+ +P +R RL L ++ ++ +M + + R
Sbjct: 63 LDDEDITK-LPM-------------HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
D+ + +L T ++ K SGG R R+ +ARAL P +LLDEP
Sbjct: 109 KDLKKAERKEELDALLEEFHITH-LRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 44/159 (27%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ GPNG+GKST+L+ I + + S R + I
Sbjct: 24 TIITGPNGSGKSTILDAI------GLALGGAQSATRRRSGVKAGC------IVAAVSA-- 69
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV----VFAYLAWQAPHLLLLD 545
QLS G+K + A + + L +LD
Sbjct: 70 ---------------------ELIFTRL--QLSGGEKELSALALILALASLKPRPLYILD 106
Query: 546 EPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLIN 581
E LD ALA+AI + +G V+V +H L
Sbjct: 107 EIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE 145
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYK 279
K+ + + SGG + R+ +AR + VKP ++L+DEP + LD + + +E EELK K
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-K 197
Query: 280 RILVIISHS 288
++I++H+
Sbjct: 198 YTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 13/75 (17%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHSQD 290
SGG + R+ +AR L +KP +LLLDEP + LD + +EE + K ++I++H+
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 291 -----------FLNG 294
FLNG
Sbjct: 225 QALRVSDRTAFFLNG 239
|
Length = 268 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
SGG + R+A+ARA+ P +L+ DEPT +LD D
Sbjct: 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 58/186 (31%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHL-------- 149
L D L++ G ++G +GSGKSTLL +L E P D D+ L
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528
Query: 150 -------TREMPAS--DKSALTCVMEVDE--ERVRLEKLAEQLVACEDDESQEQLMDIYD 198
R M S + A + +DE E A ++ +D + M ++
Sbjct: 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE-------AARMAGLAED-IRAMPMGMHT 580
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
+ + + SGG R R+ +ARAL KP +LL DE
Sbjct: 581 VISEGGG--------TL------------------SGGQRQRLLIARALVRKPRILLFDE 614
Query: 259 PTNHLD 264
T+ LD
Sbjct: 615 ATSALD 620
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CV 269
++L +G + + + SGG + R+A+A L V+P +++LDE T+ LD +
Sbjct: 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 270 WLEEELKTYKRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322
L +LK + VI I+H D N ++ LD KL G E F K +
Sbjct: 184 KLIRKLKKKNNLTVISITHDIDEANMA-DQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
Length = 282 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 53/202 (26%)
Query: 430 LALVGPNGAGKSTLL----NLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDI---- 481
+AL+GP+G+GKSTLL LI GD + SH+ L DI
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAG-------SHIELLGRTVQREGRLARDIRKSR 85
Query: 482 SPLDYMLQSFPEVKDREEMRKI-IGRYGLTGRQQVC------------------------ 516
+ Y+ Q F V + + IG G T + C
Sbjct: 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF 145
Query: 517 ---PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----IDALADAINDFEGG 569
+ LS GQ+ RV A Q ++L DEP LD E+ +D L D IN +G
Sbjct: 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGI 204
Query: 570 LVLVSHDFRLINQVAEEIWICE 591
V+V+ ++QV + CE
Sbjct: 205 TVVVT-----LHQVDYALRYCE 221
|
Length = 262 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSVGM 457
I ++V+F Y D + + I+ + +A +GP+G GKST L L DL P+ +
Sbjct: 4 IDARDVNFWYGDFHA--LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 458 --------------------VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497
+RKN + F R + + + + Y L+ VKD
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFE----NVAYGLR-VNGVKDN 116
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQ--------LSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+R+ + L G ++ LS GQ+ R+ A +P +LL+DEP +
Sbjct: 117 AFIRQRVEE-TLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 550 HLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEE 586
LD + + + I++ + +V+V+H+ + +V+++
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDK 214
|
Length = 250 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMV-RKNSHL-RFARYH--QHLHELLDLDISPLDY 486
A++GPNG GKSTLL + +TP+ G V H+ +A + + L +P D
Sbjct: 37 AIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96
Query: 487 MLQS------FPEV--------KDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVV 530
+Q +P +D E + K + G+T Q V LS GQ+ R
Sbjct: 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---DTLSGGQRQRAW 153
Query: 531 FAYLAWQAPHLLLLDEPTNHLDM-ETID--ALADAINDFEG-GLVLVSHDFRLINQVAEE 586
A + Q ++LLDEPT LD+ ID L +N +G L V HD + A
Sbjct: 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASH 213
Query: 587 IWICENGKV 595
+ GK+
Sbjct: 214 LIALREGKI 222
|
Length = 265 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157
GC +D +L G G++G +GSGK+TLL L R PD ++ + R+ D
Sbjct: 20 KGC---RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRD 74
Query: 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQ-------------EQLMDI----YDRL 200
AL+ + ER RL + V E+LM + Y +
Sbjct: 75 LYALS-----EAERRRLLRTEWGFV--HQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI 127
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLL 256
+ D E E+ + D FSGG + R+ +AR L P L+ +
Sbjct: 128 RATAGDWLE------------RVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
Query: 257 DEPTNHLD 264
DEPT LD
Sbjct: 176 DEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 30/188 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-- 457
+ ++++F +++ + ++ F +A+VGP GAGK+TL+NL+ P+VG
Sbjct: 335 VEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 458 --------VRKNSHLR--FARYHQHLHELLDLDISP---LDYMLQSFPEVKDREE----- 499
V + S LR A Q L + I L + EV + +
Sbjct: 394 IDGIDINTVTRES-LRKSIATVFQDAG-LFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 500 ---MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556
+++ G L G + +LS G++ R+ A + +L+LDE T+ LD+ET
Sbjct: 452 DFILKRSNGYDTLVGERG----NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 557 DALADAIN 564
+ +AI+
Sbjct: 508 ARVKNAID 515
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ ++K SGG + R+ +ARA+ +KP +LL+DEP + LD + +EE ELK
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211
Query: 280 RILVIISHSQ 289
I+++ + Q
Sbjct: 212 TIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 55/170 (32%)
Query: 117 GLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175
LLG NG+GKSTL+ +L G + PD +I VD + VR++
Sbjct: 34 ALLGENGAGKSTLMKILFG---LYQPDSGEIR-------------------VDGKEVRIK 71
Query: 176 -----------------KLAEQLVACED-----DESQEQLMDIYDRLDDISADTAEARAA 213
L L E+ + S+ L+D A AR
Sbjct: 72 SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR---------RQARARIK 122
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ G + K D S G + R+ + +ALY LL+LDEPT L
Sbjct: 123 ELSERYGLPVDPD-AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G E L+ + G LLG NG+GKSTL L + P ++ + K
Sbjct: 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLF--LHFNGILKPTSGEVLIKGEPIKYDKK 71
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
S L V +V D D + A T E A
Sbjct: 72 SLLEVRKTVG------------IVFQNPD-------------DQLFAPTVEEDVAFGPLN 106
Query: 219 LGFTKEMQQKKTKD-----------------FSGGWRMRIALARALYVKPHLLLLDEPTN 261
LG +KE +K+ K+ SGG + R+A+A L +KP +++LDEPT+
Sbjct: 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 262 HLD 264
LD
Sbjct: 167 GLD 169
|
Length = 275 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-------VRKNS------HLR 465
NL I T + L+GP+G GK+T+L L+ G P+ G V S +
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 466 FARYHQHLHELLDLDISPLDYML-QSFPEVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSD 523
F Y H L ++ ML E K R +E +++ G R + Q+S
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY----VDQISG 139
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRL 579
GQ+ RV A P +LL DEP ++LD ++ + I + + + V+HD
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 580 INQVAEEIWICENGKV 595
V++ + + GK+
Sbjct: 200 AFAVSDTVIVMNKGKI 215
|
Length = 351 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
SGG R+ LARAL +P LL+LDEPT +D++ V L
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 70/189 (37%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G ++G GSGK+TL L RE+ + E E V
Sbjct: 2 GEVILIVGPPGSGKTTLARALA----------------RELGPPGGGVIYIDGEDILEEV 45
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
+ L + + S E
Sbjct: 46 LDQLLLIIVGGKKASGSGEL---------------------------------------- 65
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD---------LDACVWLEEELKTYKRILV 283
R+R+ALA A +KP +L+LDE T+ LD L+ L ++
Sbjct: 66 -----RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 284 IISHSQDFL 292
+ ++ + L
Sbjct: 121 LTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
E+ G G++G NG GK+T +L P D
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP----------------------------D 392
Query: 169 EERVRLE-KLA---EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
E V E K++ + + D ++ L I D L + I+ L +
Sbjct: 393 EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS------EIIKPLQLERL 446
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ K KD SGG R+A+A L L LLDEP+ HLD
Sbjct: 447 LD-KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 42/222 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + F +L++ L++ L+G +G GKST + L NR + D I F
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL-NR---MNDLIPGF 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRL---------------EKLAEQL-VACEDDESQE 191
+ ++V E R ++ + +A L + EDDE
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDE--- 116
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALY 248
D E R L E++ K K SGG + R+ +AR +
Sbjct: 117 --------------DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162
Query: 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
V P ++L+DEP + LD + +E+ + K +VI++H+
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEPTNHLDMETIDALADAINDFEGG---L 570
I+ +SDG K + A LLL+DEP N L + + L + + + L
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 571 VLVSHDFRLIN 581
+ +H L++
Sbjct: 246 IFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 43/171 (25%), Positives = 59/171 (34%), Gaps = 48/171 (28%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV---------PDHIDIFHLTREM----- 153
L G + G NGSGK+TLL +L P+ P + R +
Sbjct: 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80
Query: 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
K+ L+ + E L D S EQ + + L + + E R
Sbjct: 81 APGIKTTLSVL--------------ENLRFWHADHSDEQ---VEEALARVGLNGFEDRPV 123
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
L S G + R+ALAR L L +LDEPT LD
Sbjct: 124 AQL-----------------SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVG--------MVRKN-SHLRFARYHQ----------- 471
++G +G+GKSTL+ L+ + P+ G + + + + LR R +
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 472 -HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
H +L+ L+ +Q P+ + E + + GL G P +LS G + RV
Sbjct: 119 PHR-TVLENVAFGLE--VQGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVG 174
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LL+DE + LD E D L + + +V ++HD ++ +
Sbjct: 175 LARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234
Query: 587 IWICENGKV 595
I I ++G++
Sbjct: 235 IAIMKDGEI 243
|
Length = 386 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHS 288
SGG + + LAR L V P +LLLDEPT+ LD +EE +++ + ++I++H+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
|
Length = 276 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D +++ + ++G +G GKST L + NR + D ID + E+ K+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NR---MNDLIDAARVEGELTFRGKN--- 107
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLDDISADTAEARAANIL 216
V + D + V L + + + + IYD ++ D + R L
Sbjct: 108 -VYDADVDPVALRRRIGMVFQKPNPFPKS----IYDNVAYGLKIQGYDGDI-DERVEESL 161
Query: 217 HGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE- 272
E++ + D SGG + R+ +ARA+ P ++L+DEP + LD A +E
Sbjct: 162 RRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED 221
Query: 273 --EELKTYKRILVIISHS 288
EEL + +VI++H+
Sbjct: 222 LIEELAE-EYTVVIVTHN 238
|
Length = 285 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
SGG + R+ +AR L V P ++L+DEP + LD A +E+ ++ K+ ++I++H+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 36/186 (19%)
Query: 431 ALVGPNGAGKSTLLNLI--YGDLTPS---VGMVRKNSHLRFARYHQHLHELLDLDISPLD 485
A++GP+G GKST L I DL PS G + + + ++ + LL I +
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV--LLRKKIGMVF 126
Query: 486 YMLQSFPE--------------VKDREEMRKIIGRYGLTGRQ-----QVCPIRQ-----L 521
FP+ + D++++ +I+ + + R+ +V L
Sbjct: 127 QKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSDRLDKNALGL 183
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL 579
S GQ+ R+ A P +LLLDEPT+ LD + + D I + G +++V+H+ +
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243
Query: 580 INQVAE 585
++V++
Sbjct: 244 ASRVSD 249
|
Length = 286 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIISH 287
SGG + RI++ARA+ P +L+LDE T+ LD + +++ + K RI +II+H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
|
Length = 1466 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 51/243 (20%)
Query: 399 VIMVQNVSFRYSDDGP---WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+N+ + + N+ + + + ++G +G+GKSTL+ G +
Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80
Query: 456 GMVR--------KNSHLRFARYH-----QHLHELLDLDISPLDYMLQSFPEV-------- 494
G ++ K ++ ++ EL +S M+ FPE
Sbjct: 81 GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR-VS----MVFQFPEYQLFKDTIE 135
Query: 495 KD-----------REEMRKIIGRY----GL-TGRQQVCPIRQLSDGQKCRVVFA-YLAWQ 537
KD + E +K+ Y GL + P LS GQK RV A LA Q
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF-GLSGGQKRRVAIAGILAIQ 194
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLINQVAEEIWICENGK 594
P +L+ DEPT LD + + I D V V +H + +VA+E+ + + GK
Sbjct: 195 -PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 595 VTK 597
+ K
Sbjct: 254 ILK 256
|
Length = 320 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 53/163 (32%)
Query: 424 IDLDTR----LALVGPNGAGKSTLLNLIYG-----------------DLTPS---VGMVR 459
I+LD + VGP+G GKSTLL +I G D+ P+ VGMV
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV- 80
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDR-EEMRKIIGRYGL 509
F Y + H +S + M SF E+ R ++ +++ L
Sbjct: 81 ------FQSYALYPH------LSVAENM--SFGLKLAGAKKEEINQRVNQVAEVLQLAHL 126
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
R+ + LS GQ+ RV P + LLDEP ++LD
Sbjct: 127 LDRKP----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 72/279 (25%)
Query: 395 IPPP---VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YG 449
P ++ V+++S Y + ++ I+ AL+GP+G GKST L I
Sbjct: 14 FPEAKEHILEVKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71
Query: 450 DLTPS---------------------------VGMV-RKNSHLRFARYHQHLHELL---D 478
DL PS +GMV +K + + Y+ H L +
Sbjct: 72 DLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGE 131
Query: 479 LDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
S LD +++ + EVKDR + L+ LS GQ+ R+
Sbjct: 132 RRKSVLDEIVEESLTKAALWDEVKDR------LHSSALS----------LSGGQQQRLCI 175
Query: 532 AYLAWQAPHLLLLDEPTNHLD---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIW 588
A P +LLLDEP + LD I+ L + + E +++V+H+ + +V++
Sbjct: 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA 234
Query: 589 ICENGKVTKWEGNILDYKETLRAKVLKEKNKSAAVSNGK 627
NG + ++Y +T + ++ K+ NG+
Sbjct: 235 FFLNGDL-------VEYDQTEQIFTSPKQQKTEDYINGR 266
|
Length = 268 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR-- 280
K+ SGG + R+ +AR L ++P+++L+DEPT+ LD + +EE + K
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200
Query: 281 ILVIISHSQD-----------FLNG 294
++I++H+ FLNG
Sbjct: 201 TIIIVTHNMQQAGRISDRTAFFLNG 225
|
Length = 254 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 38/217 (17%)
Query: 87 DVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+++ N + ++ +L+D + G ++G G+GK+TL+ +L R P
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL-MRFYD-PQKGQ 59
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM---DIYDRL-- 200
I L + D + + +R + L Q+ + I + +
Sbjct: 60 I--LIDGIDIRD---------ISRKSLR-SMIGVVL--------QDTFLFSGTIMENIRL 99
Query: 201 -DDISADTAEARAANILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPH 252
+ D AA F ++ + + S G R +A+ARA+ P
Sbjct: 100 GRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISH 287
+L+LDE T+++D + ++E L+ R +II+H
Sbjct: 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHLTREMPASDKSALTCVMEVDEERV 172
++G G+GKSTL+ +L P I DI +TR AS + + V + + +
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR---ASLRRNIAVVFQ--DAGL 420
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN--ILHGLGFTKEMQQKKT 230
+ + + D + E++ AE A+ I + ++
Sbjct: 421 FNRSIEDNIRVGRPDATDEEMRA-----------AAERAQAHDFIERKPDGYDTVVGERG 469
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ SGG R R+A+ARAL P +L+LDE T+ LD
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
Length = 588 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+FSGG RI +ARAL ++P L++ DEP + LD
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
|
Length = 331 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 110/564 (19%), Positives = 201/564 (35%), Gaps = 134/564 (23%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ +A +F L+ L + G + LLG NG+GKSTL+ VL P I I
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI- 64
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQL--------VACEDDESQEQLMDIYDR 199
D KLA QL ++ D+ + + + I R
Sbjct: 65 -NNINYNKLD-----------------HKLAAQLGIGIIYQELSVIDELTVLENLYI-GR 105
Query: 200 L--------DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
+ I RAA +L +G ++ + K + S + + +A+ L +
Sbjct: 106 HLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSISHKQMLEIAKTLMLDA 164
Query: 252 HLLLLDEPTNHL---DLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
++++DEPT+ L ++D + +L+ +V ISH + +C
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC------------ 212
Query: 309 YYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQ--SKEKT 366
D+ MK+ GS+ + S +
Sbjct: 213 ----------------------------DRYTVMKD-------GSSVCSGMVSDVSNDDI 237
Query: 367 LAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDL 426
+ MV + L ++ K V V+NV+ R D R++ F +
Sbjct: 238 VRLMVGRELQNRFNAMKENVSNLAH-----ETVFEVRNVTSR--DRKK--VRDISFSVCR 288
Query: 427 DTRLALVGPNGAGKSTLLNLIYG--------------DLTPSV-------GMV------R 459
L G G+G++ L+N ++G D++P GM R
Sbjct: 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR---EEMRKIIGRYGLTGRQQVC 516
N Q++ L + F EV ++ E R+++ + Q
Sbjct: 349 DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-- 406
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFEGGLVLV 573
I +LS G + +V+ + P +++ DEPT +D+ I + + D +++V
Sbjct: 407 -ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV 465
Query: 574 SHDFRLINQVAEEIWICENGKVTK 597
S + I V + I + G++T+
Sbjct: 466 SSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ S T+ L D L + G LLG +G GK+TLL
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL 43
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 92/218 (42%)
Query: 118 LLGLNGSGKSTLLAVL-----GNREV--------------------------PVPDHIDI 146
L+G NG+GKSTLLA + G+ + P + +
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86
Query: 147 FH-LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
F LT P + L ++AE L L D +L
Sbjct: 87 FQYLTLHQPDK--------TRTEAVASALNEVAEAL----------GLDD---KL----- 120
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGG-W-RMRIALARALYVKPH------LLLLD 257
R+ N L SGG W R+R+A A L V P LLLLD
Sbjct: 121 ----GRSVNQL-----------------SGGEWQRVRLA-AVVLQVWPDINPAGQLLLLD 158
Query: 258 EPTNHLDLDACVWLEEELKTYKR--ILVIISHSQDFLN 293
EP N LD+ L+ L + I V++S S D LN
Sbjct: 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMS-SHD-LN 194
|
Length = 248 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 38/202 (18%)
Query: 402 VQNVSFRYSDDGPWIYRNL---EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+ +FR SD + L ++ A VG NG+GKS L + G+L G
Sbjct: 6 ISQGTFRLSDT-----KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE- 59
Query: 459 RKNSHLRFARYH----QHL---------HELLDLDISPLDY----MLQSFPEVKDR---E 498
R++ R Q L ++L ++Q EVKD E
Sbjct: 60 RQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCE 117
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
++ + G L R + LS G+ + + P LL+LDEP + LD+ +
Sbjct: 118 QLAQQFGITALLDR----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
Query: 559 LADAINDFEGG---LVLVSHDF 577
LA+ + LVLV + F
Sbjct: 174 LAELLASLHQSGITLVLVLNRF 195
|
Length = 490 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 53/186 (28%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+D L + GR LLG NG+GKSTLL L ++ +T ++ + L
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDV-TLNGEPL 73
Query: 162 TCVMEVDEERVR--LEKLAEQLVACEDDE----------SQEQLMDIYDRLDDISADTAE 209
+ R+R L + A+ A E + + D +I A A
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG--EI-AWQAL 130
Query: 210 ARA-ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL---------YVKPHLLLLDEP 259
A A A L G T SGG R+ AR L P LLLDEP
Sbjct: 131 ALAGATALVGRDVTT---------LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181
Query: 260 TNHLDL 265
T LDL
Sbjct: 182 TAALDL 187
|
Length = 272 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 202 DISADTAEA--RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
++ + EA + +L + ++ ++ + SGG + R+ALA + + + L+LDEP
Sbjct: 118 NLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 260 TNHLD----LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
T LD D E K YK+ +++++H+ D + + +I + + K+ G +E
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 316 AFCKTRLELL 325
F + ELL
Sbjct: 238 IF--SNQELL 245
|
Length = 289 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMP---ASDK 158
L+D + G L+G+NGSGKSTL A++G + I I P A K
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK-ISIL----GQPTRQALQK 77
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL---------DDISADTAE 209
+ + V + +E L E +V +M Y + D A
Sbjct: 78 NLVAYVPQSEEVDWSFPVLVEDVV----------MMGRYGHMGWLRRAKKRDRQIVTAAL 127
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-- 267
AR + E + ++ + SGG + R+ LARA+ + ++LLDEP +D+
Sbjct: 128 ARVDMV--------EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
Query: 268 -CVWLEEELKTYKRILVIISHS 288
+ L EL+ + +++ +H+
Sbjct: 180 RIISLLRELRDEGKTMLVSTHN 201
|
Length = 272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSVG 456
I + +V+FRY S IY++L F D A+VG G+GKST+++L+ + DL
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHH 1225
Query: 457 MVRKNSH 463
+V KN H
Sbjct: 1226 IVFKNEH 1232
|
Length = 1466 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 399 VIMVQNVSFRYSDDG----PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
+I +NVS++Y + ++ + L ++G NG+GKST+ + L PS
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 455 VGMV----------------RKNSHLRFARYHQHLHELL---DLDISPLDYMLQSFPEVK 495
G V R + + F + + D+ P + + E++
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP-EEIR 122
Query: 496 DR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-- 552
+R +E K +G Y + LS GQK RV A + P ++ DEPT LD
Sbjct: 123 ERVDESLKKVGMY----EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 553 --METIDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
E ++ + + +N G ++L++H + A+ I + ++GKV EG
Sbjct: 179 GRREVVNTIKE-LNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGT 227
|
Length = 280 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 402 VQNVS--FRYSDDGPWIYR-------NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
V+N+S FRY W R L F + LA++G NG+GKSTL ++ G +
Sbjct: 7 VRNLSKTFRYRTG--WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 453 PSVGMVRKNSH-LRFARYH--------------------QHLHELLDLDISPLDYMLQSF 491
P+ G + + H L F Y Q + ++LD PL L +
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDF---PL--RLNTD 119
Query: 492 PEVKDREE-MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E + RE+ + + + + GL L+ GQK R+ A P +++ DE
Sbjct: 120 LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALAS 179
Query: 551 LDM 553
LDM
Sbjct: 180 LDM 182
|
Length = 267 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+ S + + L + L +N G L+G NG+GK+TLL L I
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65
Query: 145 --DI--FHLTREMPASDKSALTCVMEVDEERVRL---EKLAEQLVACEDDESQEQLMDIY 197
DI + + M + A+ V E R+ E LA E D+ QE++ +Y
Sbjct: 66 GKDITDWQTAKIM----REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY 121
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ + + +Q+ T SGG + +A+ RAL +P LLLLD
Sbjct: 122 ELFPRL-----------------HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLD 162
Query: 258 EPT 260
EP+
Sbjct: 163 EPS 165
|
Length = 237 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 50/199 (25%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNSHLRFARYHQHLHELLDLDISPLDYML- 488
AL+G NGAGKSTLL ++G G ++ + + F + E L+ IS M+
Sbjct: 28 ALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDF----KSSKEALENGIS----MVH 79
Query: 489 QSFPEVKDREEMRKI-IGRYGLTG-------------------------RQQVCPIRQLS 522
Q V R M + +GRY G R +V LS
Sbjct: 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA---TLS 136
Query: 523 DGQKCRV----VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSH 575
Q + F+Y A ++++DEPT+ L + ++ L I + G+V +SH
Sbjct: 137 VSQMQMIEIAKAFSYNA----KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
Query: 576 DFRLINQVAEEIWICENGK 594
I Q+ +EI I +G+
Sbjct: 193 KMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 234 SGGWRMRIALARAL------YVKPHLLLLDEPTNHLDL 265
SGG + R+ LAR L P LLLDEPT+ LDL
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+A+ARA+ P +LLLDE T+ LD
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 48/192 (25%), Positives = 68/192 (35%), Gaps = 33/192 (17%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
E+ G L+G NG+GKSTLLA + S
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGM----------------TSGSGSIQFA---GQ 60
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN-ILHGLGFTKEMQ 226
E +LA ++ M ++ L D N + L ++
Sbjct: 61 PLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKL- 119
Query: 227 QKKTKDFSGG-W-RMRIALARALYVKP------HLLLLDEPTNHLDLDACVWLE---EEL 275
+ T SGG W R+R+A A L + P LLLLDEP N LD+ L+ L
Sbjct: 120 GRSTNQLSGGEWQRVRLA-AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 276 KTYKRILVIISH 287
+V+ SH
Sbjct: 179 CQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISH 287
SGG + R+A+AR + P +L+LDE T+ LD ++ L+ + R ++I+H
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
|
Length = 497 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
GL+G NG GKSTL +L+ + + L +D + L
Sbjct: 31 GLVGANGCGKSTLF----------------MNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 177 LAEQLVACEDDESQEQLM-----DIYDRLDDISADTAE-ARAANILHGLGFTKEMQQKKT 230
L +Q+ D Q+ DI L ++ AE R + L + + +
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI------LVI 284
+ S G + R+A+A AL ++ LLLDEPT LD + + +RI ++I
Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG---RTQMIAIIRRIVAQGNHVII 191
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322
SH D + + + L + ++ +G E F T
Sbjct: 192 SSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229
|
Length = 271 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 41/175 (23%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
G+LG NG GK+T + +L P E EE +++
Sbjct: 371 GILGPNGIGKTTFVKLLAGVIKPD-------------------------EGSEEDLKVS- 404
Query: 177 LAEQLVACEDDESQEQLMD--IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234
Q ++ + D + E L+ I T I+ L +++ + S
Sbjct: 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT------EIVKPLNLEDLLERP-VDELS 457
Query: 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQ 289
GG R+A+A AL + L LLDEP+ +LD +E+ + K I I +++
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD------VEQRIIVAKVIRRFIENNE 506
|
Length = 591 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 55/248 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I V+N+ ++ P + N+ I+ +A++G G+GK+T + + L P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 457 MVR---KNSHLR--------------------------------------FARYHQHLHE 475
+ K+ + FA Y Q +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY-QLFEQ 121
Query: 476 LLDLDI--SPLDYMLQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFA 532
++ DI P+ + S E K R K I GL Q P +LS GQK RV A
Sbjct: 122 TIEKDIIFGPVSMGV-SKEEAKKRA--AKYIELVGLDESYLQRSPF-ELSGGQKRRVALA 177
Query: 533 YLAWQAPHLLLLDEPTNHLDME-TIDALA--DAINDFEGGLVLVSHDFRLINQVAEEIWI 589
+ P L+ DEPT LD + + L D +N ++LV+HD + + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 590 CENGKVTK 597
++GK+ K
Sbjct: 238 FKDGKIIK 245
|
Length = 305 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
LS GQ R+ A Q LLLLDEPT LD + + A+N ++V+H
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 579 LINQVAEEIWICENGKV 595
+ Q ++IW+ ++G++
Sbjct: 546 DLAQW-DQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLI-----YGDLTPSV---GMVRKNSHLR----- 465
GIDL+ R + L G NGAGKSTL+ ++ +G + G K S++R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78
Query: 466 -FARYHQHLHELLDLDISPLDYM---------LQSFPEVKDREEMRKIIGRYGLTGRQQV 515
HQ L + +L ++ ++ ++ + R + ++ L
Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAK--NLLRELQLDADNVT 136
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVL 572
P+ GQ+ V A + LL+LDEP++ L + + L D I D + V
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 573 VSHDFRLINQVAEEIWICENGK 594
+SH + V + I + +G+
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +AR + ++P ++L+DEP + LD + + +EE + K+ +VI++H
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EEL-KTYKRILVIISHS 288
SGG + R+ +AR L V P ++L+DEP + LD A +E EEL + Y +V+++H+
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYT--VVVVTHN 258
|
Length = 305 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 423 GIDLDTR----LALVGPNGAGKS-TLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
G+ L + LALVG +G+GKS T + + P+ G+ + + L
Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAAL--GILPA-GVRQTAGRVLLDGKPVAPCALR 77
Query: 478 DLDIS-----------PLDYM-------LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
I+ PL M + + D + + GL +V +
Sbjct: 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLY 137
Query: 520 --QLSDG--QKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLV 571
++S G Q+ + A L +AP ++ DEPT LD +D L + G++
Sbjct: 138 PFEMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGML 195
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
LV+HD ++ ++A+++ + +G++
Sbjct: 196 LVTHDMGVVARLADDVAVMSHGRI 219
|
Length = 254 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 51/193 (26%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
PV+ V+ +S + + + + R + + G G G++ L ++G
Sbjct: 2 EPVLEVRGLSVKGAVRD----------VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51
Query: 453 PSVGMVRKNSH-LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
P+ G + + + + + I+ + PE DR R GL
Sbjct: 52 PASGEITLDGKPVTRRSPR----DAIRAGIAYV-------PE--DR-------KREGLVL 91
Query: 512 RQQVCPIR-------QLSDG--QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562
+ LS G QK VV A + P +L+LDEPT +D+ +
Sbjct: 92 DL---SVAENIALSSLLSGGNQQK--VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146
Query: 563 INDF--EGGLVLV 573
I + G VL+
Sbjct: 147 IRELADAGKAVLL 159
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 17/62 (27%)
Query: 215 ILHGLGFTKEMQQKKTKDF-----------------SGGWRMRIALARALYVKPHLLLLD 257
+L G +K+ +++K ++ SGG R R+ +ARAL P LLLD
Sbjct: 99 VLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
Query: 258 EP 259
EP
Sbjct: 159 EP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
L G +G GKSTLLN + +L G + +
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDLRTGEISEKLG 71
|
Length = 161 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A AA IL L + +K ++ SGG R R+A+ RA+ +P + L DEP ++LD
Sbjct: 116 AEAARIL-ELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
V + N S++F +L D LEL G+ LLG NG+GKSTL+ VLG
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52
|
Length = 251 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
S G + R+ALAR + L +LDEP +D LE L
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
|
Length = 204 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 430 LALVGPNGAGKSTLLNLI----------YGDLT-----PSVGMVRKN-SHLR-FARYHQH 472
+A++G +G+GK+TLL+ I G + +K +++R
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95
Query: 473 L--HELLDLDISPLDYMLQ-SFPEVKDREEMRKI--IGRYGLTGRQQVCP--IRQLSDGQ 525
L E L Y P +K ++ ++ +S G+
Sbjct: 96 LTVRET-------LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGE 148
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ RV A P +L+LDEPT+ LD
Sbjct: 149 RRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
DV+ T G +LQD + G+R GLLG GSGKSTLL+ L
Sbjct: 1219 DVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 42/195 (21%)
Query: 87 DVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-- 142
D++ N S+ + + +L++ + G + G++G GSGKS+LL L R V +
Sbjct: 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-FRLVELSSGS 60
Query: 143 -HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE-QLMD--IYD 198
ID VD ++ L L ++ Q+ L I
Sbjct: 61 ILID--------------------GVDISKIGLHDLRSRISII----PQDPVLFSGTIRS 96
Query: 199 RLD--DISADTAEARAANILHGLGFTKEMQQKKTKD-------FSGGWRMRIALARALYV 249
LD +D +A + F + + S G R + LARAL
Sbjct: 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156
Query: 250 KPHLLLLDEPTNHLD 264
K +L+LDE T +D
Sbjct: 157 KSKILVLDEATASVD 171
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 35/159 (22%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
++ G+LG NG GK+T + +L P +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKP--------------------------DEG 54
Query: 169 EERVRLEKLA---EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM 225
+ + L+ ++ + + A + ++ L I E I L + +
Sbjct: 55 DIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE-----IAKPLQIEQIL 109
Query: 226 QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
++ + SGG R+A+A L + LLDEP+ +LD
Sbjct: 110 DREVP-ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKR 280
+K + SGG + R++LARA+Y + L D+P + +D + + E LK R
Sbjct: 756 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815
Query: 281 ILVIISHSQDFL 292
ILV +H +L
Sbjct: 816 ILV--THGISYL 825
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVI 284
+ SGG + R+++ARA+Y + + D+P + LD D+C+ ++ELK R+LV
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM--KDELKGKTRVLV- 796
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL--ELLENQMK-----QYNWEQD 337
++ FL + II + + +K G E L +L+EN K + N +
Sbjct: 797 -TNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
Query: 338 QIAHM 342
I +
Sbjct: 855 NILKL 859
|
Length = 1495 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 396 PPP------VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
PPP I ++V RY + P + L F I ++ +VG GAGKS++LN ++
Sbjct: 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF 1286
|
Length = 1622 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 36/153 (23%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG + R+++ARA+Y + + D+P + LD D C +++EL+ R+LV
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC--IKDELRGKTRVLV--- 796
Query: 287 HSQDFLNGVCTNIIH----LDKRKLKYYG-----GNYEAFCKTRL---ELLEN--QMKQY 332
TN +H +D+ L + G G YE +L+EN +M++Y
Sbjct: 797 ----------TNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEY 846
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEK 365
E + + +G+A ++ S +K
Sbjct: 847 VEENGEEEDDQTSSKPVANGNANNLKKDSSSKK 879
|
Length = 1622 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+ALAR L + +LLLDEP + LD
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 70/224 (31%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLL---NLIYGDL 451
I ++N++ Y + + I+LD AL+GP+G GKSTLL N + DL
Sbjct: 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DL 53
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDY-----ML----QSFP---------- 492
P V R + F ++ D I ++ M+ FP
Sbjct: 54 VPGV---RIEGKVLF-----DGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105
Query: 493 ----EVKDREEMRKIIGRYGLTG---------RQQVCPIRQLSDGQKCRVVFAY-LAWQA 538
+KD++E+ +I+ L R + LS GQ+ R+ A LA +
Sbjct: 106 PRLHGIKDKKELDEIV-EESLKKAALWDEVKDRLHDSALG-LSGGQQQRLCIARALAVE- 162
Query: 539 PHLLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSH 575
P +LLLDEPT+ LD E I L +V+V+H
Sbjct: 163 PEVLLLDEPTSALDPIATGKIEELIQELKKKYT-----IVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 70/203 (34%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLL---NLIY 448
P I V+N++F Y + L+ I+LD A +GP+G GKSTLL N +Y
Sbjct: 10 APSKIQVRNLNFYYGK-----FHALK-NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63
Query: 449 GDLTPS---------------------------VGMV-RKNSHLRFARYHQ-----HLHE 475
+L P VGMV +K + + Y L E
Sbjct: 64 -ELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE 122
Query: 476 LL---DLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
L ++D +++ L + EVKD+ + + G + LS GQ+ R+
Sbjct: 123 KLSRAEMD-ERVEWALTKAALWNEVKDK------LHQSGYS----------LSGGQQQRL 165
Query: 530 VFAYLAWQAPHLLLLDEPTNHLD 552
A P +LLLDEP + LD
Sbjct: 166 CIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 49/265 (18%)
Query: 396 PP-----PVIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
PP P I ++N F + P + ++ I + + +A+VG G GK++L++ +
Sbjct: 606 PPLQPGAPAISIKNGYFSWDSKTSKPTL-SDINLEIPVGSLVAIVGGTGEGKTSLISAML 664
Query: 449 GDLTP----------SVGMVRK-----NSHLR----FARYHQHLHELLDLDISPLDYMLQ 489
G+L+ SV V + N+ +R F + +D++ L + L
Sbjct: 665 GELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
P +D E IG G+ +S GQK RV A + + + D+P +
Sbjct: 725 LLPG-RDLTE----IGERGV----------NISGGQKQRVSMARAVYSNSDIYIFDDPLS 769
Query: 550 HLDMETIDALADAI--NDFEGGL-VLVSHDFRLINQVAEEIWICENGKVTKWEGNI--LD 604
LD + D+ ++ +G VLV++ + + I + E + K EG L
Sbjct: 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEG--MIKEEGTFAELS 827
Query: 605 YKETLRAKVLKEKNKSAAVSNGKKK 629
+L K+++ K A
Sbjct: 828 KSGSLFKKLMENAGKMDATQEVNTN 852
|
Length = 1495 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.004
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
LVG +G GKSTLLN + +L + G + +
Sbjct: 89 VLVGQSGVGKSTLLNALLPELVLATGEISE 118
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISH 287
SGG + RIA+AR Y KP +LDE T+ + +D ++ + + L +SH
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 19/198 (9%)
Query: 399 VIMVQNVSFRYSDDGPWIYRN-LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+N+ F+Y + N + F I ++++G NG+GKST LI G G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKD-----------REEMRKIIGR 506
V+ + L A +L + + D D REEM K +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 507 YGLTGRQQVCPIRQ---LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDAL 559
L R+ LS GQK RV A + P +++LDE T+ LD E + +
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 560 ADAINDFEGGLVLVSHDF 577
+ ++ ++ ++HD
Sbjct: 184 HEIKEKYQLTVLSITHDL 201
|
Length = 277 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| KOG0927|consensus | 614 | 100.0 | ||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0062|consensus | 582 | 100.0 | ||
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0066|consensus | 807 | 100.0 | ||
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-112 Score=889.85 Aligned_cols=608 Identities=63% Similarity=1.010 Sum_probs=551.0
Q ss_pred CCChhHhHHHHHHHHHHhhcccCCCCCCCCCCCCCCCccccccCcCCCCCCCChhHHHHHHHHHHhhHHHHhhhccCccc
Q psy10512 1 MPSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLA 80 (629)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (629)
||+|++|++.++|+++++++.+.+. +.....+... ......+...+++..+++.... +.+|+++|.+.
T Consensus 1 ~~~~~~k~k~~~~~a~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~vd~~~~~l~~~~~~-~~~~~~tg~l~ 68 (614)
T KOG0927|consen 1 MPSDASKLKSAAKKAAAKARKGRKS-KPSRKPSTNV----------AAASEETEVDALADELESLELI-AKARSVTGNLF 68 (614)
T ss_pred CccchHHHHHHHhhhhhcccccccc-CcccccCccc----------cccccchhhHHHHhhhHHHHhH-Hhhhhcccccc
Confidence 7999999999999877777755441 1111111000 0011234455666666665555 78899999999
Q ss_pred cCCCceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcch
Q psy10512 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 81 ~~~~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
++|.++++.++|++++|.+..+++|++|++++|++|||||+|||||||+|++|+|.+.|.|.++.++.+.+++.++..++
T Consensus 69 s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 69 SHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hhhhh-hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 161 LTCVM-EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
+..+. ..+..+.++....+.+....+....+.+..+|.++..++.+..+.++..+|..+||..+++++.+.+||||||+
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 77776 66777888887777766543444556677788888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR-ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~-tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
|++|||+|+.+|++|||||||||||++++.||+++|.++.. ++|+++|+.+|++.+|++|++|+++++++|+|||+.|.
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCC
Q psy10512 319 KTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPP 398 (629)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (629)
..+.+..++|+++|+|+++++.+++.++++++++.++++++++++++.+++|...++.+++..++...|.||.++..++|
T Consensus 309 ~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~p 388 (614)
T KOG0927|consen 309 KTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPP 388 (614)
T ss_pred hHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|.+.|++|+|+++ ++++++++|.|+.++++++|||||||||||||+++|.+.|+.|.|..+.+.+++++.|+..+.++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ld 467 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLD 467 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcC
Confidence 99999999999754 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q psy10512 479 LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558 (629)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~ 558 (629)
++.++.+++...++.....+.++.+|++|||++.....|+++||+|||.||+||++++.+|+||||||||||||++++..
T Consensus 468 l~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~ 547 (614)
T KOG0927|consen 468 LDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDA 547 (614)
T ss_pred cchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHH
Confidence 99999999988887556778899999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHhhhh
Q psy10512 559 LADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNKSA 621 (629)
Q Consensus 559 l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 621 (629)
+.++|++|.++||+||||+.++.+++++||+|.+|.+..|+|++..|++++..+...+..+.+
T Consensus 548 laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~e~~~~~ 610 (614)
T KOG0927|consen 548 LAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKEDEREA 610 (614)
T ss_pred HHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhhhhHhhH
Confidence 999999999999999999999999999999999999999999999999999888777666544
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-100 Score=834.05 Aligned_cols=515 Identities=40% Similarity=0.660 Sum_probs=437.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceE------EEeecccCCCCCc-c
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID------IFHLTREMPASDK-S 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~------i~~~~~~~~~~~~-~ 159 (629)
+|.++|++++||++.+|+|+||+|.+|++|||||+||||||||||+|+|.+.|++|+|. +.++.|+....+. +
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCcc
Confidence 69999999999999999999999999999999999999999999999999999999875 4556666655433 4
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhc-cCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVA-CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
.+..+.........+......... ..+. ....+..+...+..++.+..+.++..+|..+||+.. ++++++||||||
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r 159 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADP-DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWR 159 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHHH
Confidence 444444333222222222122211 1111 111222222233445557788999999999999854 899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
+||+||+||+.+||||||||||||||.+++.||+++|+++.+|+|+||||++|++.+|++|+.++.|++..|.|||+.|.
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhc-CCCcccccCcceEEeccCCCC-CC
Q psy10512 319 KTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQ-GLTDKVTTDKTVTFTFPSCGK-IP 396 (629)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~ 396 (629)
+++.+....+.+.+..+++.++++++|+.++...+.+ +++++++.+.+++|... ....+........+.|+..+. .+
T Consensus 240 ~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~-~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g 318 (530)
T COG0488 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLG 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCC
Confidence 9999999999999999999999999999998776655 57899999999999853 112222223445567777663 67
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
+++++++|+++.|+++ ..+++++||.|.+|++||||||||+|||||||+|+|...|.+|.|.+.....++|+.|+....
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l 397 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL 397 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc
Confidence 8899999999999654 458999999999999999999999999999999999999999999999889999999998544
Q ss_pred cCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q psy10512 477 LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~ 556 (629)
. .+.++.+++....+. ..+..++.+|++|+|++....+++..||||||.||.||++++.+|+||||||||||||++++
T Consensus 398 ~-~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 398 D-PDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred C-ccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 4 667899998876654 23678999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 557 DALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 557 ~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
+.|.++|.+|.+|||+||||.+|+..+|+++|++.+ .+..+.|+|++|.+..
T Consensus 476 ~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 476 EALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 999999999999999999999999999999999999 8888899999998753
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-97 Score=774.05 Aligned_cols=501 Identities=45% Similarity=0.757 Sum_probs=448.7
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
.+.+|.+.+++..||++.+|.+.++++..|.+|||+|+||+|||||||+|+. |++.+++..+++...+......
T Consensus 77 ~~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 77 KSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred cccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 4678999999999999999999999999999999999999999999999986 7787777777776665555555
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
+...|..+..+......+. ..+ ..++...++|..+||+++++.+++.+||||||||++|
T Consensus 151 ~l~~D~~~~dfl~~e~~l~---------------~~~------~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELL---------------AGL------TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLAL 209 (582)
T ss_pred hhhccHHHHHHHHhhhhhh---------------ccc------hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHH
Confidence 5555544433321111110 000 2233344599999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~ 323 (629)
||||+.+||||||||||||||..++.||+++|..|+.|+|+||||..|++.+|+.||++++-++.+|.|||+.|.+++.+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC-CCCCCCCeEEE
Q psy10512 324 LLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPPPVIMV 402 (629)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 402 (629)
...+++++|+.++.++++++.++.+|++++++ +..++|+.+.+++++. ..++..+..+.|.||. +....+|+|++
T Consensus 290 ~~~n~qrefe~q~~~R~h~q~fid~FrYna~r-a~svqSRIk~L~kl~~---lk~~~~~~~~~~~fP~~~e~~~~p~l~i 365 (582)
T KOG0062|consen 290 AKKNQQREFEVQMKYRAHLQVFIDKFRYNAAR-ASSVQSRIKMLGKLPA---LKSTLIEVLIGFLFPTEGEVLSPPNLRI 365 (582)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhccCccc-chhHHHHHHHhccCCC---CCccceecccceecCCCCCcCCCCeeEE
Confidence 99999999999999999999999999999888 7789999999998876 5556666677889998 56678899999
Q ss_pred EEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCC
Q psy10512 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDIS 482 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~ 482 (629)
.+|+|.|+++..+++.++++++...++++++|+||+||||+++++.|.+.|..|.+.++++.+++|+.|+..+.++...+
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~ 445 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVN 445 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhH
Confidence 99999998766457999999999999999999999999999999999999999999999999999999998888887788
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10512 483 PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562 (629)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~ 562 (629)
..+++...+|+ ..+++++..|+.|||++....+++.+||||||-||+||.+.+.+|++|||||||||||.++..+|..+
T Consensus 446 ~vd~~~~~~pG-~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~A 524 (582)
T KOG0062|consen 446 AVDFMEKSFPG-KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKA 524 (582)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHH
Confidence 88888888887 47888999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHHHHHHHHH
Q psy10512 563 INDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616 (629)
Q Consensus 563 l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~ 616 (629)
|+.|+++||+||||.+|+..+|+++|++++|+|..++|+..+|++.+..++...
T Consensus 525 l~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e~~~~ 578 (582)
T KOG0062|consen 525 LKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRAK 578 (582)
T ss_pred HHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999998887666554
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-93 Score=807.39 Aligned_cols=512 Identities=38% Similarity=0.659 Sum_probs=407.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe------ecccCCCCCcch
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH------LTREMPASDKSA 160 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~------~~~~~~~~~~~~ 160 (629)
+|.++||+++|+++.+|+||||+|++|+++|||||||||||||||+|+|++.|++|+|.+.. +.+.......+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 38899999999999999999999999999999999999999999999999999999987643 222111111122
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
+..+..... .+......+...........+......+...+......++..+|+.+||..+..++++.+||||||||
T Consensus 81 ~~~v~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 81 LEYVIDGDR---EYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 222221111 01000000000000000001111111111222334567889999999996456789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
|+|||||+.+|+||||||||||||+.++.||+++|+++++|||+||||++|+..+||+|++|++|++..|.|+|+.|...
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 237 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQ 237 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeE
Q psy10512 321 RLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVI 400 (629)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (629)
+.+....+.+.|..+++.++++++|+.+++..+.+ +++++++.+.+++|.. ..+........+.|+.....+.++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~-~~~a~~r~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 313 (638)
T PRK10636 238 RATRLAQQQAMYESQQERVAHLQSYIDRFRAKATK-AKQAQSRIKMLERMEL---IAPAHVDNPFHFSFRAPESLPNPLL 313 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHhhc---ccccccCCceeEecCCCccCCCceE
Confidence 88888888889999999999999999886654433 5667788888887653 1121112355667766555567899
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCC
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 480 (629)
+++||++.|++ ..+|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.+++...++|++|+....+...
T Consensus 314 ~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 314 KMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCcc
Confidence 99999999953 3489999999999999999999999999999999999999999999976678999999743333444
Q ss_pred CCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy10512 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560 (629)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~ 560 (629)
.++.+++....+. .....++.+|+.|++......+++.+|||||||||+||++|+.+|+||||||||||||+.+++.|.
T Consensus 392 ~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~ 470 (638)
T PRK10636 392 ESPLQHLARLAPQ-ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470 (638)
T ss_pred chHHHHHHHhCch-hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 5666654322222 335678899999999754456788999999999999999999999999999999999999999999
Q ss_pred HHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 561 DAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 561 ~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
++|.++++|||+||||++++..+||+|++|++|+++.+.|++++|.+.
T Consensus 471 ~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 471 EALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred HHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence 999999889999999999999999999999999998889999999653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-90 Score=789.88 Aligned_cols=518 Identities=45% Similarity=0.784 Sum_probs=406.2
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCCceEEEeecccCCCCCcch
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE---VPVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~---~p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
.+.+|+++||+++|+++.+|+|+||+|++|+++||||||||||||||++|+|.. .|..| .+.++.|++...+.+.
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g--~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNC--QILHVEQEVVGDDTTA 251 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCC--EEEEEeccCCCCCCCH
Confidence 456799999999999889999999999999999999999999999999999964 34444 4555566544333333
Q ss_pred hhhhhhchHHHHH-----HHHHHHHHh--cc--------------CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC
Q psy10512 161 LTCVMEVDEERVR-----LEKLAEQLV--AC--------------EDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219 (629)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l 219 (629)
...+...+..+.. .....+... .. +.......+..++..+...+.+.+++++..+|..+
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 3332222111111 111111100 00 00111122333444455555667888999999999
Q ss_pred CCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhccee
Q psy10512 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 220 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~i 299 (629)
||.....++++.+|||||||||+|||||+.+|+||||||||||||+.++.||+++|++++.|||+||||++++..+||+|
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 99766778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10512 300 IHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKV 379 (629)
Q Consensus 300 i~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (629)
++|++|++..|+|+|+.|...+.+....+.++|+.+++++++++.++.++..++.+ +..++++.+.++++.. ..++
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~-~~~~~s~~k~l~~~~~---~~~~ 487 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKR-ASLVQSRIKALDRLGH---VDAV 487 (718)
T ss_pred EEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHhhcchHHHHHhh---hhcc
Confidence 99999999999999999999988888889999999999999999998887655443 3445555555555432 1111
Q ss_pred ccCcceEEeccCCC-CCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 380 TTDKTVTFTFPSCG-KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 380 ~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.......+.+|... ..+.++|+++||++.|+++. .+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I 566 (718)
T PLN03073 488 VNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566 (718)
T ss_pred ccCCCceeecCCCccCCCCceEEEEeeEEEeCCCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence 11223344555432 23357899999999995433 48999999999999999999999999999999999999999999
Q ss_pred EECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 459 RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 459 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
.+++...++|++|+....+....+....+...++. ...+.++.+|+.||+.+....+++.+|||||||||+|||+|+.+
T Consensus 567 ~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 567 FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred EECCceeEEEEeccccccCCcchhHHHHHHHhcCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 99887889999997532222222222222222222 23567889999999975444568899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
|++|||||||||||+.+++.+.+.|.++++|||+||||++++..+||++|+|++|+++.+.|++++|++.+
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHh
Confidence 99999999999999999999999999888899999999999999999999999999987899999987654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-89 Score=777.36 Aligned_cols=511 Identities=28% Similarity=0.485 Sum_probs=397.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEee------cccCCCCC-cc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL------TREMPASD-KS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~------~~~~~~~~-~~ 159 (629)
+|+++||+++|+++.+|+||||+|++|+++||+|||||||||||++|+|++.|++|+|.+... .+...... ..
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 599999999999999999999999999999999999999999999999999999999876431 11110100 11
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhc-cCChhHHHHH---HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVA-CEDDESQEQL---MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
....+................+.. ........++ ..+...+..........++.++|+.+||. .++++.+|||
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~LSg 159 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSSLSG 159 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhhcCH
Confidence 111110000000000000001100 0000000111 11111122222234567889999999996 3788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||||||+|||||+.+|+||||||||||||+.++.||+++|++++.|||+||||++++..+||+|++|++|+++.+.|+|+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCC
Q psy10512 316 AFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKI 395 (629)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (629)
.|..++.+..+.+..++..++++++++..|+.+ +..+.+ +++ +++.+.++++.... ..+........+.|+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~-~~~-~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 315 (635)
T PRK11147 240 QYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARR-TRN-EGRVRALKALRRER-SERREVMGTAKMQVEEASRS 315 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhh-hhH-HHHHHHHHHhhhhh-ccccccCCceeEEeCCCCCC
Confidence 999988888877788888888888888888876 332222 233 55666666654211 11111123456677765555
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhc
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~ 475 (629)
+.++|+++||++.|++ ..+|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.++....++|++|+. .
T Consensus 316 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~ 392 (635)
T PRK11147 316 GKIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-A 392 (635)
T ss_pred CCceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-c
Confidence 6779999999999963 348999999999999999999999999999999999999999999996566899999975 2
Q ss_pred ccCCCCCHHHHHhhcCCC---hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 476 LLDLDISPLDYMLQSFPE---VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD 552 (629)
.+....|+.+++...... ......+..+|+.|++......+++.+|||||||||+||++|+.+|+||||||||||||
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 355667888877543211 11245678899999997544567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEe-CCEEEEecCCHHHHHH
Q psy10512 553 METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEGNILDYKE 607 (629)
Q Consensus 553 ~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~ 607 (629)
+.+++.|.++|.++++|||+||||++++..+||+|++|+ +|+++.|.|+|++|.+
T Consensus 473 ~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 473 VETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999998899999999999999999999998 8999999999999965
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-88 Score=689.16 Aligned_cols=523 Identities=44% Similarity=0.771 Sum_probs=456.2
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
.+++|.|+|++++-.++.+|.|.||.|-.|.+||||||||-||||||+.|+..-..+|.+|.+.+..+++...+.+++..
T Consensus 261 na~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 261 NAMDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred hcccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 35689999999999999999999999999999999999999999999999988778889999999999998888888888
Q ss_pred hhhchHHHHHHHHHHHHHhc---cCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVA---CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
+...+..|..+......+.. ..+.+..+.+-.+++.+..++.+.++.+++.+|..+||+.++++++...+|||||+|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 88887777666544433322 234456677778888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
|+|||||+..|.+|.|||||||||..++.||-++|..|.+|++|||||..|++.+|+.||+|++.++.+|.|||..|.+.
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKm 500 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKM 500 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhc-----------C---CCcccccCcceE
Q psy10512 321 RLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQ-----------G---LTDKVTTDKTVT 386 (629)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~---~~~~~~~~~~~~ 386 (629)
..+......++|+.++++++.++.. | .+.+ ....+.++....+.... + +. ..+++..+.
T Consensus 501 Y~Qk~~e~~K~yekQeK~LkelKa~----G-kS~K-qAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL-~RpKEY~Vk 573 (807)
T KOG0066|consen 501 YAQKMQEHEKNYEKQEKQLKELKAE----G-KSAK-QAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELL-QRPKEYSVK 573 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----C-cchH-HHHHHHHHHHHHHHHhccccccCccccccCHHHH-hCchheEEE
Confidence 8888888889999998887776542 1 1111 11111111111111110 0 11 123456789
Q ss_pred EeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeE
Q psy10512 387 FTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRF 466 (629)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~ 466 (629)
|.||.+.++.+|+|-+.+|+|.|++..+ +|..++|.|.-.++||||||||.||||||++|.|-+.|+.|+.+.+.++++
T Consensus 574 F~FPep~~L~PPvLGlH~VtFgy~gqkp-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 574 FQFPEPTKLNPPVLGLHDVTFGYPGQKP-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI 652 (807)
T ss_pred EecCCCCCCCCCeeecccccccCCCCCc-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence 9999999999999999999999976554 899999999999999999999999999999999999999999999999999
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
|+|.|+..+.+....|+.+|+...|. ...+.++..|..|||......-.+..|||||+.||+||-..+..|+||||||
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FN--lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFN--LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcC--CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 99999999889999999999887764 3567889999999998777777788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHHHHHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~ 616 (629)
|||+||++++.+|.++|++|.++|||||||.+++....-.+||+++..|-.++|++++|++.+...+++-
T Consensus 731 PTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv 800 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEV 800 (807)
T ss_pred CCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888778999999999999999999998887776653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-85 Score=734.05 Aligned_cols=517 Identities=30% Similarity=0.541 Sum_probs=380.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe------ecccCCCC-Ccc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH------LTREMPAS-DKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~------~~~~~~~~-~~~ 159 (629)
+|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|+.|++.+.+ +.++.... ..+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 38899999999988999999999999999999999999999999999999999999987642 12221111 111
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCC--hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACED--DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
....+................+..... .............+..+.....+.++.++|+.+|+.....++++.+|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 111110000000000000000000000 000000011111111122223456788999999997434467899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
||||+|||||+.+|+|||||||||+||+.++.+|.+.|.+.+.|||+||||++++..+||+|++|++|+++.+.|+|+.|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999997778999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCC
Q psy10512 318 CKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPP 397 (629)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
...+......+.+++..++.+++++..++.+....+.+ +..+.++.+.++++.... ...... ....+.++.....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 317 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSANASK-AKQATSRAKQIDKIKLEE-VKPSSR-QNPFIRFEQDKKLHR 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-hHHHHHHHHHHhhccccc-cCCccc-cCceeeCCCCCCCCC
Confidence 87766555556666777777777776665543222111 222333333333321100 000000 011122332222345
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
++|+++||++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|.....+
T Consensus 318 ~~l~~~~l~~~~~~-~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 318 NALEVENLTKGFDN-G-PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred ceEEEEeeEEeeCC-c-eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 68999999999963 3 489999999999999999999999999999999999999999999998888999999764334
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
....++.+++..........+.+.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 44567777654211111234568899999999533446688999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
.+.+.|.++++|||+||||++++..+||++++|++|+++.+.|++.++.+.
T Consensus 476 ~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 476 SLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999889999999999999999999999999998788998877543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-84 Score=733.17 Aligned_cols=528 Identities=27% Similarity=0.407 Sum_probs=391.4
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE------eecccCCCCC-c
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF------HLTREMPASD-K 158 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~------~~~~~~~~~~-~ 158 (629)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ++.++....+ .
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 85 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEK 85 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 699999999998 7889999999999999999999999999999999999999999998653 2333221111 1
Q ss_pred chhhhhhhchHHHHHHHHHHHHHh--ccCChhHH----HHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLV--ACEDDESQ----EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
+....+.................. ........ .....+...+...+......++.++++.+|+. . .++++.+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~~~~~ 163 (556)
T PRK11819 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDAKVTK 163 (556)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccCchhh
Confidence 111111000000000000000000 00000000 00011111122222234456788999999995 3 6889999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||||||+|||||+.+|+|||||||||+||+.++.++.+.|++++.|||+||||++++..+||+|++|++|+++.+.|
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g 243 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEG 243 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999988899
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC
Q psy10512 313 NYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392 (629)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (629)
+|+.|...+......+...+.+.++.++++..++.+... .+ ....++..+.++++... .+........+.++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 317 (556)
T PRK11819 244 NYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPK--AR-QAKSKARLARYEELLSE---EYQKRNETNEIFIPPG 317 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHhhcc---cccccCCCceeecCCC
Confidence 999998877766666666777777777766666553210 01 11122333334443221 1111111223334443
Q ss_pred CCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccc
Q psy10512 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQH 472 (629)
Q Consensus 393 ~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~ 472 (629)
+....++|+++||++.|++ . .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|.
T Consensus 318 ~~~~~~~l~~~~l~~~~~~-~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~ 395 (556)
T PRK11819 318 PRLGDKVIEAENLSKSFGD-R-LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS 395 (556)
T ss_pred CCCCCeEEEEEeEEEEECC-e-eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCc
Confidence 3334578999999999963 3 4899999999999999999999999999999999999999999999766679999997
Q ss_pred hhcccCCCCCHHHHHhhcCC--C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 473 LHELLDLDISPLDYMLQSFP--E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
.. .+....|+.+++..... . ......++.+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 396 ~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 396 RD-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred hh-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 52 34556788887653211 1 01233456789999996544456789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeC-CEEEEecCCHHHHHHHHHHHHHHHHhhhhhhhh
Q psy10512 550 HLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICEN-GKVTKWEGNILDYKETLRAKVLKEKNKSAAVSN 625 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (629)
|||+.++..|.+.|.++.++||+||||++++..+||+|++|++ |++..+.|++++|.+...+........++++.-
T Consensus 475 ~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (556)
T PRK11819 475 DLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKRRLGADAARPHRIKY 551 (556)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 9999999999999999988999999999999999999999996 899888999999988765555555555555543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-84 Score=727.36 Aligned_cols=528 Identities=27% Similarity=0.417 Sum_probs=389.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE------eecccCCCC-Cc
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF------HLTREMPAS-DK 158 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~------~~~~~~~~~-~~ 158 (629)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+..|+.|+|.+. ++.++.... ..
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 599999999998 7789999999999999999999999999999999999999999988653 223322111 11
Q ss_pred chhhhhhhchHHHHHHHHHHHHHh--ccCChhHHH----HHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLV--ACEDDESQE----QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
+....+.................. ......... ....+...+...+......++.++++.+|+. . .++++.+
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~ 161 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDADVTK 161 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCchhh
Confidence 111111100000000000000000 000000000 0011111222233333456788899999995 3 5788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||||||+|||||+.+|+|||||||||+||+.++.+|.+.|++++.|||+||||++++..+||++++|++|+++.+.|
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g 241 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEG 241 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999988889
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC
Q psy10512 313 NYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392 (629)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (629)
+|+.|...+....+.+..++.+.++++.++..++.+.... .+ ...++..+.++++... .+........+.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 315 (552)
T TIGR03719 242 NYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQ--AKSKARLARYEELLSQ---EFQKRNETAEIYIPPG 315 (552)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HH--HHHHHHHHHHHhhhhh---cccccCCCceeecCCC
Confidence 9999988776666666666776667666666555431110 00 0111222223322211 0111111122334433
Q ss_pred CCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccc
Q psy10512 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQH 472 (629)
Q Consensus 393 ~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~ 472 (629)
.....++|+++|+++.|++ . .+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|.
T Consensus 316 ~~~~~~~l~~~~l~~~~~~-~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~ 393 (552)
T TIGR03719 316 PRLGDKVIEAENLSKGFGD-K-LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS 393 (552)
T ss_pred CCCCCeEEEEeeEEEEECC-e-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCC
Confidence 2234578999999999963 3 4899999999999999999999999999999999999999999999766679999997
Q ss_pred hhcccCCCCCHHHHHhhcCC--C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 473 LHELLDLDISPLDYMLQSFP--E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
.. .+....|+.+++..... . ......++.+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 394 ~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 394 RD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred cc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 42 24456788887654321 1 11133466899999996544456789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeC-CEEEEecCCHHHHHHHHHHHHHHHHhhhhhhhh
Q psy10512 550 HLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICEN-GKVTKWEGNILDYKETLRAKVLKEKNKSAAVSN 625 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (629)
|||+.+++.+.+.|.++.++||+||||++++..+||+|++|++ |++..+.|++++|.+.......+...+++++.-
T Consensus 473 ~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (552)
T TIGR03719 473 DLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGEDADQPHRIKY 549 (552)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHHHHhhhhhhHhHhh
Confidence 9999999999999999988999999999999999999999996 688889999999988776666666666666654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=675.42 Aligned_cols=466 Identities=23% Similarity=0.338 Sum_probs=348.8
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CCceEEEeecccCCCCCc
Q psy10512 87 DVKIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV----PDHIDIFHLTREMPASDK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~----~g~i~i~~~~~~~~~~~~ 158 (629)
.|+++||++.|... .+++||||+|.+||++||||.|||||||+.++|.|++++. .|+|.+.+ .++.....
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g--~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG--RDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC--cchhcCCH
Confidence 69999999999642 5999999999999999999999999999999999998765 46555433 22221111
Q ss_pred chhhhhhhchHHHHHHHHHHHH-HhccCC-hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhh-hcccCCCCh
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQ-LVACED-DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ-QKKTKDFSG 235 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~~~~~~LSG 235 (629)
.....+. ...+..++|. +..+.+ ......+...+..-.....+++.+++.++|+.+||++... ++++++|||
T Consensus 83 ~~~r~~r-----g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSG 157 (539)
T COG1123 83 REMRKLR-----GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSG 157 (539)
T ss_pred HHHHHhc-----cccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCc
Confidence 0000000 0000011111 111111 1122223332222222346778889999999999986544 469999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||.||+||+.+|++||+||||++||+..+..+.+.|+++ +.++|+||||+..+.++||||+||++|++++.|
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 9999999999999999999999999999999999999988654 789999999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC
Q psy10512 312 GNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS 391 (629)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (629)
...+.|.+. ++.|... .+...+. .............
T Consensus 238 ~~~~i~~~p--------~hpYT~~------------------------------Ll~a~p~------~~~~~~~~~~~~~ 273 (539)
T COG1123 238 PTEEILSNP--------QHPYTRG------------------------------LLAAVPR------LGDEKIIRLPRRG 273 (539)
T ss_pred CHHHHHhcc--------CCcccHH------------------------------HHhhCCC------ccccccccccccc
Confidence 765554322 1111100 0000000 0000000000000
Q ss_pred CCCCCCCeEEEEEEEEEEcCC---------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 392 CGKIPPPVIMVQNVSFRYSDD---------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 392 ~~~~~~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.....|+++++||+++|... ...+++||||+|.+||++||||+||||||||.|+|+|+++|++|.|.+++
T Consensus 274 -~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g 352 (539)
T COG1123 274 -PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352 (539)
T ss_pred -ccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeC
Confidence 01156899999999999631 13479999999999999999999999999999999999999999999876
Q ss_pred c-------------eeEEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCCcccccCcCcCCh
Q psy10512 463 H-------------LRFARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523 (629)
Q Consensus 463 ~-------------~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 523 (629)
. ..+.+++|++...+++..|+.+.+.... .....++++.++|+.+||+.....+++++|||
T Consensus 353 ~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG 432 (539)
T COG1123 353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG 432 (539)
T ss_pred cccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCc
Confidence 3 2566788888888888888877664321 11233456889999999987656677899999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEec
Q psy10512 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599 (629)
Q Consensus 524 Gqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 599 (629)
||||||+|||||+.+|++||+||||+.||+..+..+.++|.++ +.|+|+||||+.++..+||||++|++|+|++ .
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~ 511 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-E 511 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-e
Confidence 9999999999999999999999999999999999999998765 6799999999999999999999999999986 5
Q ss_pred CCHHHH
Q psy10512 600 GNILDY 605 (629)
Q Consensus 600 g~~~~~ 605 (629)
|+.+..
T Consensus 512 G~~~~v 517 (539)
T COG1123 512 GPTEKV 517 (539)
T ss_pred CCHHHH
Confidence 665443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=688.90 Aligned_cols=455 Identities=24% Similarity=0.375 Sum_probs=336.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCCceEEEe--------ecccCCCC-
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVPDHIDIFH--------LTREMPAS- 156 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~g~i~i~~--------~~~~~~~~- 156 (629)
|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|++ .|+.|+|.+.+ ..+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999889999999999999999999999999999999999996 68999988752 11100000
Q ss_pred C----cchh----hhhhhchH-----HHHHHHHHHHH-HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC
Q psy10512 157 D----KSAL----TCVMEVDE-----ERVRLEKLAEQ-LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222 (629)
Q Consensus 157 ~----~~~~----~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 222 (629)
+ ...+ ........ .+..+..+.+. ...++..+..+++...+ ........+...++.++++.+|+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL-EEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCh
Confidence 0 0000 00000000 00001111111 01111112223322111 111233344556789999999996
Q ss_pred chhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcce
Q psy10512 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 223 ~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ 298 (629)
+..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+
T Consensus 160 -~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 160 -HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred -hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 5678899999999999999999999999999999999999999999998877554 67999999999999999999
Q ss_pred eEEEcCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcc
Q psy10512 299 IIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDK 378 (629)
Q Consensus 299 ii~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (629)
|++|++|+++.. |+++.+... + .... .. + .+
T Consensus 239 i~~l~~G~i~~~-g~~~~~~~~-----------~-------------~~~~----~~--------------~------~~ 269 (520)
T TIGR03269 239 AIWLENGEIKEE-GTPDEVVAV-----------F-------------MEGV----SE--------------V------EK 269 (520)
T ss_pred EEEEeCCEEeee-cCHHHHHHH-----------H-------------Hhhc----hh--------------h------cc
Confidence 999999999864 566544210 0 0000 00 0 00
Q ss_pred cccCcceEEeccCCCCCCCCeEEEEEEEEEEcC---CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc
Q psy10512 379 VTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSD---DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455 (629)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~ 455 (629)
. .....+.++|+++||++.|+. +...+|+++||+|.+|++++|+||||||||||+++|+|+++|++
T Consensus 270 ~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~ 338 (520)
T TIGR03269 270 E-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338 (520)
T ss_pred c-----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 000113468999999999952 22348999999999999999999999999999999999999999
Q ss_pred cEEEEC-Cc-----------------eeEEeeccchhcccCCCCCHHHHHhhc----CCChhhHHHHHHHHHHcCCCCc-
Q psy10512 456 GMVRKN-SH-----------------LRFARYHQHLHELLDLDISPLDYMLQS----FPEVKDREEMRKIIGRYGLTGR- 512 (629)
Q Consensus 456 G~i~~~-~~-----------------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~- 512 (629)
|+|.++ +. ..++|++|+.. +....++.+++... .+.....+.+.++++.+||...
T Consensus 339 G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 416 (520)
T TIGR03269 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK 416 (520)
T ss_pred eEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc
Confidence 999984 31 23789998753 34557888776432 1111233567889999999742
Q ss_pred ---ccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcC
Q psy10512 513 ---QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 513 ---~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d 585 (629)
..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||
T Consensus 417 ~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 417 AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCC
Confidence 345688999999999999999999999999999999999999999999998653 5789999999999999999
Q ss_pred EEEEEeCCEEEEecCCHHHHHH
Q psy10512 586 EIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 586 ~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++++|++|+++ +.|+++++.+
T Consensus 497 ~i~~l~~G~i~-~~g~~~~~~~ 517 (520)
T TIGR03269 497 RAALMRDGKIV-KIGDPEEIVE 517 (520)
T ss_pred EEEEEECCEEE-EECCHHHHHh
Confidence 99999999997 4677766543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-80 Score=688.69 Aligned_cols=451 Identities=19% Similarity=0.246 Sum_probs=335.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p--~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+++| ++|+|.+.+.. +........
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~--~~~~~~~~~--- 79 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE--LQASNIRDT--- 79 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE--CCCCCHHHH---
Confidence 59999999999988999999999999999999999999999999999999986 78888775432 211100000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh---ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD---DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
.+..+..+.++...++ ..+..++..+..... .........++.++++.+|+. +..++++.+|||||||||
T Consensus 80 -----~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 80 -----ERAGIAIIHQELALVK-ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLV 152 (506)
T ss_pred -----HHCCeEEEEeccccCC-CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHH
Confidence 0000111111111111 112222222111111 112233456788999999996 567899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+...+ +.
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~-~~ 231 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG-MT 231 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc-CC
Confidence 9999999999999999999999999999999988665 6799999999999999999999999999987654322 11
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC-CCCCCC
Q psy10512 319 KTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPP 397 (629)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 397 (629)
... .+..+. +.. ... .+|. ......
T Consensus 232 ~~~-------------------~~~~~~---~~~----------------------~~~----------~~~~~~~~~~~ 257 (506)
T PRK13549 232 EDD-------------------IITMMV---GRE----------------------LTA----------LYPREPHTIGE 257 (506)
T ss_pred HHH-------------------HHHHhh---CcC----------------------ccc----------cccccccCCCC
Confidence 000 000000 000 000 0000 001134
Q ss_pred CeEEEEEEEEEEcC-CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-CCccEEEECCc------------
Q psy10512 398 PVIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-PSVGMVRKNSH------------ 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~------------ 463 (629)
++|+++||++.|+. +...+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 68999999999942 12248999999999999999999999999999999999999 59999998762
Q ss_pred eeEEeeccchh-cccCCCCCHHHHHhhc----C------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 464 LRFARYHQHLH-ELLDLDISPLDYMLQS----F------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 464 ~~~~~~~q~~~-~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
..++|++|... ..+....++.+++... + ......+.+.++++.+|+.....++++.+|||||||||+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 23788888753 1234456777765421 1 11112356788999999963334568899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999999999999988765 578999999999999999999999999996 46666655
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=697.88 Aligned_cols=489 Identities=17% Similarity=0.227 Sum_probs=340.8
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ .++|+||||+|++|+++|||||||||||||+++|+|++.|++|.+.+.+.. +...... +.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~--~~~~~~~-~~ 88 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKML--LRRRSRQ-VI 88 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEE--ecccccc-cc
Confidence 5999999999962 579999999999999999999999999999999999999999988765421 1000000 00
Q ss_pred hhhhchH-HHH-----HHHHHHHHH--hccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc--hhhhcccCC
Q psy10512 163 CVMEVDE-ERV-----RLEKLAEQL--VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK--EMQQKKTKD 232 (629)
Q Consensus 163 ~~~~~~~-~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~ 232 (629)
.+..... ... .+..+.++. ...+..+..+++.............+...++.++|+.+||.. ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0000000 000 011111111 011112222332221111012334455678899999999963 357889999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999999999999999999999999999999999888877643 689999999999999999999999999998
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEe
Q psy10512 309 YYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFT 388 (629)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (629)
.. |+++.+... ....|.. .+...+........ .......... . ......... ..
T Consensus 249 ~~-g~~~~~~~~-------~~~~~~~------~l~~~~~~~~~~~~------~~~~~~~~~~-~---~~~~~~~~~--~~ 302 (623)
T PRK10261 249 ET-GSVEQIFHA-------PQHPYTR------ALLAAVPQLGAMKG------LDYPRRFPLI-S---LEHPAKQEP--PI 302 (623)
T ss_pred cc-CCHHHhhcC-------CCChhhh------hhhhccCccccccc------ccCCcccccc-c---cccccccCc--cc
Confidence 65 454443211 0000100 00000000000000 0000000000 0 000000000 00
Q ss_pred ccCCCCCCCCeEEEEEEEEEEcCC---------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEE
Q psy10512 389 FPSCGKIPPPVIMVQNVSFRYSDD---------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459 (629)
Q Consensus 389 ~~~~~~~~~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 459 (629)
++.......++|+++||++.|+.. ...+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 303 ~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~ 382 (623)
T PRK10261 303 EQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382 (623)
T ss_pred ccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE
Confidence 111111234789999999999521 13489999999999999999999999999999999999999999999
Q ss_pred ECCc--------------eeEEeeccchhcccCCCCCHHHHHhhc-----C-CChhhHHHHHHHHHHcCCCCcccccCcC
Q psy10512 460 KNSH--------------LRFARYHQHLHELLDLDISPLDYMLQS-----F-PEVKDREEMRKIIGRYGLTGRQQVCPIR 519 (629)
Q Consensus 460 ~~~~--------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 519 (629)
+++. ..++|++|+....+....++.+++... . ......+++.++|+.+||.....++++.
T Consensus 383 ~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred ECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 8763 147899998643455567887765421 1 1112345678999999996333456789
Q ss_pred cCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 520 ~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+|||||||||+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++..+||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998654 57899999999999999999999999999
Q ss_pred EEecCCHHHH
Q psy10512 596 TKWEGNILDY 605 (629)
Q Consensus 596 ~~~~g~~~~~ 605 (629)
+ ..|+.+++
T Consensus 543 v-~~g~~~~i 551 (623)
T PRK10261 543 V-EIGPRRAV 551 (623)
T ss_pred E-EecCHHHH
Confidence 7 46776654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=686.57 Aligned_cols=445 Identities=20% Similarity=0.270 Sum_probs=331.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|++|+++||+|||||||||||++|+|++.|++|+|.+.+.. +........
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~--i~~~~~~~~----- 77 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN--YNKLDHKLA----- 77 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE--CCCCCHHHH-----
Confidence 5999999999998899999999999999999999999999999999999999999998875432 211100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhh----hhc---cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDR----LDD---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+..+..+.+....+.. .+..++...... ... ........++.++++.+|+. +..++++.+|||||||
T Consensus 78 ---~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~q 152 (510)
T PRK09700 78 ---AQLGIGIIYQELSVIDE-LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQ 152 (510)
T ss_pred ---HHCCeEEEeecccccCC-CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHH
Confidence 00001111111111111 122222211100 001 11223456788999999997 5678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||+|||||+.+|+||||||||++||+.++.++++.|+++ +.|||+||||++++..+||++++|++|++++. |+++.
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 231 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS-GMVSD 231 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee-cchhh
Confidence 999999999999999999999999999999999988664 68999999999999999999999999999865 44443
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC-CCCC
Q psy10512 317 FCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS-CGKI 395 (629)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 395 (629)
+.... . +... .+.... . ..... .+. ....
T Consensus 232 ~~~~~---~----------------~~~~---~~~~~~-----------------~-~~~~~----------~~~~~~~~ 261 (510)
T PRK09700 232 VSNDD---I----------------VRLM---VGRELQ-----------------N-RFNAM----------KENVSNLA 261 (510)
T ss_pred CCHHH---H----------------HHHh---cCCCcc-----------------c-ccccc----------ccccccCC
Confidence 32100 0 0000 000000 0 00000 000 0111
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
.+++|+++|+++.|. . +|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 262 ~~~~l~~~~l~~~~~---~-~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 262 HETVFEVRNVTSRDR---K-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred CCcEEEEeCccccCC---C-cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHH
Confidence 346899999998762 2 799999999999999999999999999999999999999999998762
Q ss_pred eeEEeeccchh-cccCCCCCHHHHHhhcC--------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 464 LRFARYHQHLH-ELLDLDISPLDYMLQSF--------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 464 ~~~~~~~q~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..++|++|... ..+....++.+++.... ........+.++++.+|+.....++++.+||||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 14789988742 23445678877754321 0111234577899999996333467889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEe
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 598 (629)
|+|||||+.+|+||||||||+|||+.+++.+.++|+++ +.|||+||||++++..+||++++|++|+++..
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999765 57899999999999999999999999999753
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-79 Score=683.42 Aligned_cols=458 Identities=20% Similarity=0.305 Sum_probs=336.5
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCC
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~ 157 (629)
+|+++|++++|++ +.+|+|+||+|.+||++||+||||||||||+++|+|+++| ++|++.+.+.. +....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGES--LLHAS 82 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEe--cccCC
Confidence 5999999999963 5799999999999999999999999999999999999986 57888775432 11100
Q ss_pred cchhhhhhhchHHH-HHHHHHHHHHh-ccCChhHHHHHHHHHhhh-hccChhhHHHHHHHHHHhCCCCc--hhhhcccCC
Q psy10512 158 KSALTCVMEVDEER-VRLEKLAEQLV-ACEDDESQEQLMDIYDRL-DDISADTAEARAANILHGLGFTK--EMQQKKTKD 232 (629)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~ 232 (629)
..... ..+ ..+..+.+... ...+..+..+........ ..........++.++++.+|+.. ...++++.+
T Consensus 83 ~~~~~------~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~ 156 (529)
T PRK15134 83 EQTLR------GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ 156 (529)
T ss_pred HHHHH------HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence 00000 000 00111111100 011111222221111111 12233445678899999999963 246889999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988763 689999999999999999999999999999
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEe
Q psy10512 309 YYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFT 388 (629)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (629)
+++++.+.+..... .+ ...+. ..... ..+
T Consensus 237 ~~g~~~~~~~~~~~--------~~---------~~~~~---------------------~~~~~---~~~---------- 265 (529)
T PRK15134 237 EQNRAATLFSAPTH--------PY---------TQKLL---------------------NSEPS---GDP---------- 265 (529)
T ss_pred EeCCHHHHhhCCCC--------HH---------HHHHH---------------------HhCcc---ccc----------
Confidence 87654332211000 00 00000 00000 000
Q ss_pred ccCCCCCCCCeEEEEEEEEEEcC---------CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEE
Q psy10512 389 FPSCGKIPPPVIMVQNVSFRYSD---------DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459 (629)
Q Consensus 389 ~~~~~~~~~~~l~~~~l~~~y~~---------~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 459 (629)
.+. ...+.++|+++|+++.|+. +...+|+++||+|++|+++||+||||||||||+++|+|++ |++|+|.
T Consensus 266 ~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~ 343 (529)
T PRK15134 266 VPL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIW 343 (529)
T ss_pred ccc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEE
Confidence 000 0113568999999999952 1234899999999999999999999999999999999998 4899999
Q ss_pred ECCc--------------eeEEeeccchhcccCCCCCHHHHHhhc-------CCChhhHHHHHHHHHHcCCCCcccccCc
Q psy10512 460 KNSH--------------LRFARYHQHLHELLDLDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPI 518 (629)
Q Consensus 460 ~~~~--------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 518 (629)
+++. ..++|++|.....+....++.+++... .+.....+.+.++|+.+|+.....++++
T Consensus 344 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 423 (529)
T PRK15134 344 FDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP 423 (529)
T ss_pred ECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence 8762 247899987532344557887776432 1111234567889999999633345688
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 519 ~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 999999999999999999999999999999999999999999999754 5689999999999999999999999999
Q ss_pred EEEecCCHHHHH
Q psy10512 595 VTKWEGNILDYK 606 (629)
Q Consensus 595 i~~~~g~~~~~~ 606 (629)
++ ..|+.+++.
T Consensus 504 i~-~~~~~~~~~ 514 (529)
T PRK15134 504 VV-EQGDCERVF 514 (529)
T ss_pred EE-EEcCHHHHh
Confidence 97 467776653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-79 Score=679.79 Aligned_cols=451 Identities=18% Similarity=0.258 Sum_probs=333.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+.+.. +........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~----- 83 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP--CARLTPAKA----- 83 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--CCCCCHHHH-----
Confidence 5999999999998889999999999999999999999999999999999999999998875422 111100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+..+.+....++. .+..++.... +. .......++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 84 ---~~~~i~~v~q~~~~~~~-~tv~e~l~~~--~~--~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 84 ---HQLGIYLVPQEPLLFPN-LSVKENILFG--LP--KRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred ---HhCCEEEEeccCccCCC-CcHHHHhhcc--cc--cchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHH
Confidence 00000011111111111 1222221111 11 1123456788999999997 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~ 323 (629)
|+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++. |+++.+.....
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~~~~~- 232 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS-GKTADLSTDDI- 232 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cChHHcCHHHH-
Confidence 99999999999999999999999999988765 68999999999999999999999999999864 56655432110
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC---CCCCCCCeE
Q psy10512 324 LLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS---CGKIPPPVI 400 (629)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 400 (629)
. ..+. +..... . +.. .. ...+.+|. .....+++|
T Consensus 233 -----~-------------~~~~---~~~~~~---~----------~~~---~~------~~~~~~~~~~~~~~~~~~~l 269 (510)
T PRK15439 233 -----I-------------QAIT---PAAREK---S----------LSA---SQ------KLWLELPGNRRQQAAGAPVL 269 (510)
T ss_pred -----H-------------HHHh---Cccccc---c----------ccc---cc------cccccccccccccCCCCceE
Confidence 0 0000 000000 0 000 00 00011111 011235689
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEEe
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFAR 468 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~~ 468 (629)
+++|+++ . +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 270 ~~~~l~~------~-~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 342 (510)
T PRK15439 270 TVEDLTG------E-GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY 342 (510)
T ss_pred EEeCCCC------C-CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence 9999983 1 599999999999999999999999999999999999999999998763 24788
Q ss_pred eccchh-cccCCCCCHHHHHhhc------C--CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 469 YHQHLH-ELLDLDISPLDYMLQS------F--PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 469 ~~q~~~-~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|... ..+....++.+++... . ......+.+.++|+.+|+.....++++.+|||||||||+|||||+.+|
T Consensus 343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence 988742 2234455666654211 1 111233457889999999633345688999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+||||||||+|||+.+++.+.+.|+++ +.+||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 423 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 491 (510)
T PRK15439 423 QLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTGAAIN 491 (510)
T ss_pred CEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEccccCC
Confidence 999999999999999999999998775 5789999999999999999999999999974 56555443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=677.30 Aligned_cols=450 Identities=21% Similarity=0.286 Sum_probs=329.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p--~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|+++|++++|+++++|+|+||+|++|+++||+|||||||||||++|+|+++| ++|++.+.+. .+.......
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~--~~~~~~~~~----- 74 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGS--PLKASNIRD----- 74 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCE--ECCCCCHHH-----
Confidence 7899999999988999999999999999999999999999999999999886 6788776432 221110000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh----ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD----DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+..+..+.+....++..+..++ ........ .........++.++++.+|+.....++++.+|||||||||
T Consensus 75 ---~~~~~i~~v~q~~~~~~~~tv~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 75 ---TERAGIVIIHQELTLVPELSVAEN-IFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred ---HHhCCEEEEeeccccCCCCcHHHH-HHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 000001111111111111122222 22111110 0122334567889999999964334677999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++.++.+.+ +.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~-~~ 229 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST-MS 229 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc-CC
Confidence 9999999999999999999999999999999987654 6799999999999999999999999999987654322 10
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC-CCCCCC
Q psy10512 319 KTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPP 397 (629)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 397 (629)
... .+. .+........ ++. ..+.+.
T Consensus 230 ~~~-----------------------~~~---------------------~~~~~~~~~~----------~~~~~~~~~~ 255 (500)
T TIGR02633 230 EDD-----------------------IIT---------------------MMVGREITSL----------YPHEPHEIGD 255 (500)
T ss_pred HHH-----------------------HHH---------------------HHhCcccccc----------ccccccCCCC
Confidence 000 000 0000000000 000 001234
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCc------------
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSH------------ 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~------------ 463 (629)
++|+++|+++.|+.+ ...+|+++||+|.+||+++|+|||||||||||++|+|+++| ++|+|.+++.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 589999999998421 22389999999999999999999999999999999999995 8999998762
Q ss_pred eeEEeeccchh-cccCCCCCHHHHHhhc----C------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 464 LRFARYHQHLH-ELLDLDISPLDYMLQS----F------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 464 ~~~~~~~q~~~-~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
..++|++|... ..+....++.+++... + ......+.+.++++.+++.....++++.+|||||||||+||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 24788888753 1234456776655321 1 11112356788999999964334568899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
|||+.+|+||||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++. ..+..+
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~ 489 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG-DFVNHA 489 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEcccc
Confidence 9999999999999999999999999999887665 5789999999999999999999999999974 344333
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=676.91 Aligned_cols=445 Identities=20% Similarity=0.283 Sum_probs=331.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.+.. +........
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~----- 76 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE--VTFNGPKSS----- 76 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCCCCHHHH-----
Confidence 5999999999998899999999999999999999999999999999999999999999875432 111100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh----hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL----DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.+..+..+.+....++..+..+++ ...... ..........++.++++.+|+. +..++++.+|||||||||+
T Consensus 77 ---~~~~i~~v~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 77 ---QEAGIGIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVE 151 (501)
T ss_pred ---HhCCEEEEEcchhccCCCcHHHHh-hhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHH
Confidence 000000111111111111222222 111111 1112233456788999999997 4678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|||||+.+|+||||||||++||+.++.++++.|+++ +.|||+||||++++..+||+|++|++|+++..+...+ +..
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~-~~~ 230 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD-LTE 230 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc-CCH
Confidence 999999999999999999999999999999887654 6799999999999999999999999999987654322 110
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCe
Q psy10512 320 TRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPV 399 (629)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (629)
. ...... .........+ . .+. ...+++
T Consensus 231 ~-----------------------~~~~~~---------------------~~~~~~~~~~-----~--~~~--~~~~~~ 257 (501)
T PRK10762 231 D-----------------------SLIEMM---------------------VGRKLEDQYP-----R--LDK--APGEVR 257 (501)
T ss_pred H-----------------------HHHHHh---------------------cCCCcccccc-----c--ccc--CCCCcE
Confidence 0 000000 0000000000 0 000 113468
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~ 467 (629)
|+++|+++ . +|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 258 l~~~~l~~------~-~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 258 LKVDNLSG------P-GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEeCccc------C-CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 99999984 2 699999999999999999999999999999999999999999998762 2478
Q ss_pred eeccchh-cccCCCCCHHHHHhhc----C-------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 468 RYHQHLH-ELLDLDISPLDYMLQS----F-------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 468 ~~~q~~~-~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
|++|... ..+....++.+++... . ......+.+.++++.+|+.....++++.+|||||||||+|||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 9998753 1234556777765421 0 01122456789999999953334668899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+.+|++|||||||+|||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+..++
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 482 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA 482 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999999999999876 458999999999999999999999999996 45655444
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=677.10 Aligned_cols=448 Identities=20% Similarity=0.249 Sum_probs=331.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~--i~~~~~~~------ 75 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE--MRFASTTA------ 75 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE--CCCCCHHH------
Confidence 5999999999998899999999999999999999999999999999999999999999875432 11100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh--hh-hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD--RL-DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
..+..+..+.+....++..+..+++ .... .. ..........++.++++.+|+. ...++++.+|||||||||+|
T Consensus 76 --~~~~~i~~v~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 76 --ALAAGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred --HHhCCEEEEEechhccCCCCHHHHH-HhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHH
Confidence 0000000011111111111222222 1111 00 1112334456788999999996 45688999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
||||+.+|+||||||||++||+.++.++++.|.++ +.|||+||||++++..+||+|++|++|+++..+..+......
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRD 231 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHH
Confidence 99999999999999999999999999999988754 689999999999999999999999999998644322111000
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeE
Q psy10512 321 RLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVI 400 (629)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (629)
. ... .+.... .... ...+ +....++++
T Consensus 232 ---~--------------------~~~---------------------~~~~~~-~~~~-------~~~~-~~~~~~~~l 258 (501)
T PRK11288 232 ---Q--------------------LVQ---------------------AMVGRE-IGDI-------YGYR-PRPLGEVRL 258 (501)
T ss_pred ---H--------------------HHH---------------------HhcCCC-cccc-------cccc-ccCCCCcEE
Confidence 0 000 000000 0000 0000 001134579
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEEe
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFAR 468 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~~ 468 (629)
+++|+++. . +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 259 ~~~~~~~~-----~-~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 259 RLDGLKGP-----G-LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEeccccC-----C-cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 99999842 2 799999999999999999999999999999999999999999998763 24678
Q ss_pred eccchh-cccCCCCCHHHHHhhcC-----------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 469 YHQHLH-ELLDLDISPLDYMLQSF-----------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 469 ~~q~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
++|... ..+....++.+++.... ......+.+.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 888753 22344567777654211 111223467889999999533446788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
.+|+||||||||+|||+.++..++++|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 999999999999999999999999998654 679999999999999999999999999997 467666554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-78 Score=671.44 Aligned_cols=450 Identities=22% Similarity=0.274 Sum_probs=326.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|++.+.+. .+......
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~--~~~~~~~~------- 73 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS--HITRLSFE------- 73 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCc--ccccCCHH-------
Confidence 599999999999888999999999999999999999999999999999999999999876431 11100000
Q ss_pred chHHHHHHHHHHHHHh--ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLV--ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
..+..+....+... ....... .....+.+.+. . .....+++.++++.+|+. +..++++.+|||||||||+||
T Consensus 74 --~~~~~i~~~~q~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 74 --QLQKLVSDEWQRNNTDMLSPGED-DTGRTTAEIIQ-D-EVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred --HHHHHhceeccCcchhhcccchh-hccccHHHhcc-c-chhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHH
Confidence 00011111111000 0000000 00011111111 0 112346788999999996 567999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~ 321 (629)
|||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+ +.+.+....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~-~~~~~~~~~ 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETG-EREEILQQA 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeC-CHHHHhcch
Confidence 9999999999999999999999999999998776 679999999999999999999999999998764 433321100
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEE
Q psy10512 322 LELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIM 401 (629)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 401 (629)
.. .+.... +.+.. . ..+..... . .+.......++|+
T Consensus 227 ----------------~~-------~~~~~~---------------~~~~~--~-~~~~~~~~-~--~~~~~~~~~~~l~ 262 (490)
T PRK10938 227 ----------------LV-------AQLAHS---------------EQLEG--V-QLPEPDEP-S--ARHALPANEPRIV 262 (490)
T ss_pred ----------------hh-------hhhhhh---------------hccCc--c-ccCccccc-c--cccccCCCCceEE
Confidence 00 000000 00000 0 00000000 0 0000112356899
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCc------------eeEEe
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSH------------LRFAR 468 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~------------~~~~~ 468 (629)
++|+++.|++ . .+|+++||+|.+||+++|+||||||||||+++|+|+.+| ++|+|.+++. ..++|
T Consensus 263 ~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 263 LNNGVVSYND-R-PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EeceEEEECC-e-eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 9999999963 3 489999999999999999999999999999999998876 6999998752 23788
Q ss_pred eccchhcccCCCCCHHHHHhhc------C-C--ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQS------F-P--EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|..........++.+++... . . .....+.+.++++.+|+.....++++.+|||||||||+|||||+.+|
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 420 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 8886532222233444443211 0 0 11224567899999999752345688999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---C-ceEEEEecCHHHHHh-hcCEEEEEeCCEEEEe
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---E-GGLVLVSHDFRLINQ-VAEEIWICENGKVTKW 598 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~-~~vi~vsHd~~~~~~-~~d~i~~l~~G~i~~~ 598 (629)
+||||||||+|||+.++..+.+.|.++ + .|||+||||++++.. +||++++|++|+|+.+
T Consensus 421 ~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 421 TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999876 2 369999999999987 6999999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=666.29 Aligned_cols=445 Identities=19% Similarity=0.231 Sum_probs=323.2
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +....... .
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~--------~ 70 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE--IDFKSSKE--------A 70 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEE--CCCCCHHH--------H
Confidence 3689999999899999999999999999999999999999999999999999998875432 11110000 0
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc--cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD--ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.+..+..+.++...+...+..+++......... .......+++.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al 149 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAF 149 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHH
Confidence 000000011111111111222222110000111 12223345788999999996 457889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLEL 324 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~~ 324 (629)
+.+|+||||||||++||+.++.++++.|+++ +.|||+||||++++..+||+|++|++|+++..+.+.+. ...
T Consensus 150 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~~---- 224 (491)
T PRK10982 150 SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL-TMD---- 224 (491)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC-CHH----
Confidence 9999999999999999999999999988664 68999999999999999999999999999876543221 000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC-CCCCCCCeEEEE
Q psy10512 325 LENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPPPVIMVQ 403 (629)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 403 (629)
... +.+....... .++. .....+++|+++
T Consensus 225 -------------------~~~---------------------~~~~~~~~~~----------~~~~~~~~~~~~~i~~~ 254 (491)
T PRK10982 225 -------------------KII---------------------AMMVGRSLTQ----------RFPDKENKPGEVILEVR 254 (491)
T ss_pred -------------------HHH---------------------HHHhCCCccc----------ccccccCCCCCcEEEEe
Confidence 000 0000000000 0000 001134689999
Q ss_pred EEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------eEEeecc
Q psy10512 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------RFARYHQ 471 (629)
Q Consensus 404 ~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------~~~~~~q 471 (629)
|+++.| .. +|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++.. .++|++|
T Consensus 255 ~l~~~~---~~-~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 255 NLTSLR---QP-SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred Cccccc---Cc-ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 999975 23 8999999999999999999999999999999999999999999997631 2678877
Q ss_pred chh-cccCCCCCHHHH-----Hhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 472 HLH-ELLDLDISPLDY-----MLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 472 ~~~-~~~~~~~~~~~~-----~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
... ..+....++.++ +... + ......+.+.++++.+++.....++++.+|||||||||+||||++.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 642 112223333222 2110 0 111234567889999999633346788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+||||||||+|||+.+++.+++.|.++ +.|||+||||++++..+||++++|++|+++.+ ++...|
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~-~~~~~~ 478 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI-VDTKTT 478 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE-EccccC
Confidence 999999999999999999999888554 67999999999999999999999999999743 333333
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-74 Score=580.94 Aligned_cols=460 Identities=21% Similarity=0.318 Sum_probs=347.8
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCCceEEEeecccCCCCCcc
Q psy10512 87 DVKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP---VPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~----~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p---~~g~i~i~~~~~~~~~~~~~ 159 (629)
.+.++||++.|+ ...++++|||+|++||.++|||+||||||-..+.|.++++. ..++..+.+.+.++......
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 599999999996 57799999999999999999999999999999999998743 11223333333333221111
Q ss_pred hhhhhhhchHHHHHHHHHHHHHh-ccCCh-hHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc--hhhhcccCCCCh
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLV-ACEDD-ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK--EMQQKKTKDFSG 235 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSG 235 (629)
.+..+.. ..+.+++++.. ...+. +...++.+....-..+....+++++.++|+.+|+.. ...+.++++|||
T Consensus 86 ~lr~iRG-----~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 86 QLRGVRG-----NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred HHhhhcc-----cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 1100000 00111111110 01111 112233333333345667788899999999999973 356789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||.||.||+.+|++||.||||++||..-+..+.++|+++ +..+++||||+..+..++|||++|.+|++++.+
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 9999999999999999999999999999999999999888654 789999999999999999999999999999876
Q ss_pred CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccC
Q psy10512 312 GNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPS 391 (629)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (629)
.....|.. .++.|.. ++.. .++ ...+ +.
T Consensus 241 ~t~~lF~~--------PqHpYTr----------------------------------~Ll~---aeP--~g~~-----~p 268 (534)
T COG4172 241 TTETLFAA--------PQHPYTR----------------------------------KLLA---AEP--SGDP-----PP 268 (534)
T ss_pred cHHHHhhC--------CCChHHH----------------------------------HHHh---cCC--CCCC-----CC
Confidence 54333321 1111110 0111 010 1100 11
Q ss_pred CCCCCCCeEEEEEEEEEEcCCC---------CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 392 CGKIPPPVIMVQNVSFRYSDDG---------PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 392 ~~~~~~~~l~~~~l~~~y~~~~---------~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.+...+++|+.++|.+.|+-.+ ..+++++||++.+|+.+||||.+|||||||-.+|.+++++. |.|++.|
T Consensus 269 ~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G 347 (534)
T COG4172 269 LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG 347 (534)
T ss_pred CCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC
Confidence 2233567899999999995321 23789999999999999999999999999999999999987 9999987
Q ss_pred c--------------eeEEeeccchhcccCCCCCHHHHHhhcC-------CChhhHHHHHHHHHHcCCCCcccccCcCcC
Q psy10512 463 H--------------LRFARYHQHLHELLDLDISPLDYMLQSF-------PEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521 (629)
Q Consensus 463 ~--------------~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 521 (629)
. .++..++|++...+++.+++.+.+..+. ......+++.++|..+||+.....++++++
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 3 2466788988877888888876654332 122345778899999999988777888999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 522 SgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||||||++||||++.+|++++||||||+||..-+.++.++|+++ +-+-++||||+..+..+||+|+||.+|+|++
T Consensus 428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee
Confidence 999999999999999999999999999999999999999998776 4589999999999999999999999999986
Q ss_pred ecCCHHHH
Q psy10512 598 WEGNILDY 605 (629)
Q Consensus 598 ~~g~~~~~ 605 (629)
.|+.++.
T Consensus 508 -~G~~~~i 514 (534)
T COG4172 508 -QGPTEAV 514 (534)
T ss_pred -eCCHHHH
Confidence 6765544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-73 Score=636.83 Aligned_cols=441 Identities=21% Similarity=0.260 Sum_probs=314.5
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
+++++||+. .+|++++ ++++|+++||+||||||||||||+|+|+++|+.|++.... .....+..+...+..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~-------~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEP-------SWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCC-------cHHHHHHHhCChHHH
Confidence 489999874 5999999 8999999999999999999999999999999999885210 000000000000000
Q ss_pred H--HHHHHHHHHHhccCChhHHH-H--HHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 171 R--VRLEKLAEQLVACEDDESQE-Q--LMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 171 ~--~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
. ..+......+.......... . ...+.+.+. ......++.++++.+||. ...++++.+|||||+|||+||+
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~---~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLK---KVDERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAA 225 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHH---hhhHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHH
Confidence 0 00000000000000000000 0 001111111 112345788999999996 5679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~ 323 (629)
||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|+++. |.|..+......
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~ 300 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGV 300 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc-----cccceecchhHH
Confidence 999999999999999999999999999998877 8899999999999999999999997641 112111111100
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCC--CCCCCeEE
Q psy10512 324 LLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCG--KIPPPVIM 401 (629)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 401 (629)
. ..+..+...+.. . +.+.. . .....+.++... ....++|+
T Consensus 301 ~---------------~~i~~~~~~~~~-------~--------e~~~~---~-----~~~~~~~~~~~~~~~~~~~~l~ 342 (590)
T PRK13409 301 R---------------VGINEYLKGYLP-------E--------ENMRI---R-----PEPIEFEERPPRDESERETLVE 342 (590)
T ss_pred H---------------HhHHHHHHhcch-------h--------hhhhc---c-----ccCcceecCCCccccCCceEEE
Confidence 0 001111111100 0 00000 0 000112221111 12457899
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCC
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDI 481 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 481 (629)
++|+++.|++ . .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ ..++|++|+.. .....
T Consensus 343 ~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~ 415 (590)
T PRK13409 343 YPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDG 415 (590)
T ss_pred EcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCC
Confidence 9999999953 3 5999999999999999999999999999999999999999999886 57899999864 34567
Q ss_pred CHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10512 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD 561 (629)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~ 561 (629)
|+.+++............+.++|+.+||.. ..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+
T Consensus 416 tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~ 494 (590)
T PRK13409 416 TVEDLLRSITDDLGSSYYKSEIIKPLQLER-LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK 494 (590)
T ss_pred cHHHHHHHHhhhcChHHHHHHHHHHCCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 888876532111112335678999999975 4567889999999999999999999999999999999999999999999
Q ss_pred HHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 562 AINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 562 ~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
.|+++ +.|||+||||++++..+|||+++|++ ++.
T Consensus 495 ~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 495 AIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 99876 57899999999999999999999965 664
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-70 Score=582.45 Aligned_cols=440 Identities=24% Similarity=0.326 Sum_probs=345.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.++++|++|+||+.++|+||||+|.+||++||+|.||||||||+|+|+|.++|++|+|.+.+..... .+..
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~--~sp~------- 78 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAF--SSPR------- 78 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccC--CCHH-------
Confidence 5899999999999999999999999999999999999999999999999999999999886443221 1110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh--h-hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD--R-LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
+.....+..+.|++..+++.+..+|+..... + +..++......++.++|..+|+..+ .+.++.+||+||||.|+|
T Consensus 79 -~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 -DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred -HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHH
Confidence 0111112223345555555555555432111 1 2335667788899999999999644 788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
||||..+++||||||||++|+......|++.++++ |.+||+|||.++++.++||||.+|++|+++.....-..+
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~--- 233 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET--- 233 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC---
Confidence 99999999999999999999999999999877654 789999999999999999999999999988643210111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEecc--CCCCCCCC
Q psy10512 321 RLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFP--SCGKIPPP 398 (629)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 398 (629)
+.......|....+... || ......++
T Consensus 234 -----------------------------------------~~~~lv~~MvGr~~~~~----------~~~~~~~~~~~~ 262 (500)
T COG1129 234 -----------------------------------------SEDELVRLMVGRELEDL----------FPEPPEEGIGEP 262 (500)
T ss_pred -----------------------------------------CHHHHHHHhhCcchhhh----------cccccccCCCCc
Confidence 01112223333211111 11 11123467
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~ 466 (629)
++++++++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..++.+|+|.++|. ..+
T Consensus 263 ~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 89999998531 489999999999999999999999999999999999999999999884 247
Q ss_pred Eeeccchh-cccCCCCCHHHHHhh----c------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLH-ELLDLDISPLDYMLQ----S------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~-~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
+|++.+.. ..+....++.+++.. . .......+.+.++...+++.......++.+||||+||||.|||+|
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL 416 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL 416 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH
Confidence 78776533 334455555554321 1 122234566788999999987777789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+.+|++|||||||.|.|..++.+++++|+++ +.+||+||.|+.++..+||||+||++|+++.
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999877 5689999999999999999999999999975
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=542.67 Aligned_cols=446 Identities=22% Similarity=0.294 Sum_probs=352.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.+++++++|.|++..+++||||+|.+||++||+|+||||||||+++|.|++.|++|+|.+.+....+...
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP---------- 73 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP---------- 73 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH----------
Confidence 4899999999999999999999999999999999999999999999999999999999987654443221
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh--hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD--RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+..+..+.++.|++...+..+..+|+..-.+ ....++.....+++.++.+.+||+-+ .++++.+||-|+||||.|-
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-ccceeecCCcchhHHHHHH
Confidence 11223334445555555555555555543322 12234566788899999999999754 6889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~ 321 (629)
+||+.+|++|||||||+.|-|...+.|++.|+++ |+|||+|||.++++.++|||+.+|+.|+++....+..+.
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~---- 228 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAET---- 228 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCC----
Confidence 9999999999999999999999999999988765 799999999999999999999999999987432210000
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEE
Q psy10512 322 LELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIM 401 (629)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 401 (629)
+.....+.|+...+..+.. .+ +...+.++|+
T Consensus 229 ----------------------------------------t~~ela~lMvG~~v~~~~~--------~~-~~~pg~~vL~ 259 (501)
T COG3845 229 ----------------------------------------TEEELAELMVGREVVLRVV--------KP-PSTPGEVVLE 259 (501)
T ss_pred ----------------------------------------CHHHHHHHhcCCccccccc--------cC-CCCCCCeEEE
Confidence 0111223344422211111 11 1223478999
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------eEEe
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------------RFAR 468 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------~~~~ 468 (629)
+++|+..-..+ ...++++||+|..|||+||.|-.|.|.+.|+.+|+|+.+|.+|+|.++|.. .++|
T Consensus 260 V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~ 338 (501)
T COG3845 260 VEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAY 338 (501)
T ss_pred EeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCcc
Confidence 99999875432 347999999999999999999999999999999999999999999998753 3567
Q ss_pred eccch-hcccCCCCCHHHHHhhcCC------------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 469 YHQHL-HELLDLDISPLDYMLQSFP------------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 469 ~~q~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
++.+. ...+.+++++.+++..... .......+.++++.|++.......|+.+||||++||+.+||-|
T Consensus 339 VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl 418 (501)
T COG3845 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAREL 418 (501)
T ss_pred CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhh
Confidence 76553 3345566777776532211 0123456788999999976666678999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
..+|++||+.+||.|||..+.+.+.+.|.+. +.+|++||-|++++..+||||+||.+|+++.
T Consensus 419 ~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999999999999999999999999988665 5689999999999999999999999999974
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-64 Score=572.87 Aligned_cols=203 Identities=27% Similarity=0.332 Sum_probs=169.5
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
-|+++||+|.||.. ..+||+|+||+|++|+.+|||||+||||||.+.+|-.++.|++|.|.+++. ..+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 38999999999742 124899999999999999999999999999999999999999999999873 357
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc-------cc---ccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR-------QQ---VCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~---~~~~~~LSgGqkqrv~lAral~ 536 (629)
+.+.|.+. -++.|..+++..+... ...+++.++++..+..+. .. -.+-.+||||||||+|||||++
T Consensus 1067 ~lVsQEP~---LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1067 GLVSQEPV---LFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred ceeccCch---hhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 78888764 3567899998877433 456666666665443211 11 1133589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++|+||||||.||+||.++...+.++|.+. +.|.|+|.|.+..+.+ ||.|+|+++|+|++ .|+.+++..
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 999999999999999999999999999886 5789999999999965 99999999999985 799888755
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=581.32 Aligned_cols=208 Identities=22% Similarity=0.261 Sum_probs=176.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFA 467 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~ 467 (629)
.+|+++||++.|++....+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 378999999999643245999999999999999999999999999999999999999999998873 2488
Q ss_pred eeccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|... +...+|+.+++.. +.+....++.+.++|+.+||... .++++++|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~~--L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFDA--IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-ADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEecccc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998743 4456788877532 12222234567789999999764 45678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
||||||+|||+.+++.+++.|.++ +.|||++||++++++.+||||++|++|+++ ..|++++++...
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999999998775 468999999999999999999999999997 578888776543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=577.72 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=170.8
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC------------------------
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP------------------------ 453 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p------------------------ 453 (629)
-|+++||+|+|+.. ..++|+|+||+|++|+++|||||||||||||+++|+|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 49999999999632 23489999999999999999999999999999999999999
Q ss_pred ------------------------------CccEEEECCc-----------eeEEeeccchhcccCCCCCHHHHHhhcCC
Q psy10512 454 ------------------------------SVGMVRKNSH-----------LRFARYHQHLHELLDLDISPLDYMLQSFP 492 (629)
Q Consensus 454 ------------------------------~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 492 (629)
++|+|.++|. ..++|++|++. -++.|+.+++..+.+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~---LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM---LFNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc---cccccHHHHHhcCCC
Confidence 6999999873 35899999863 356789999877654
Q ss_pred ChhhHHHHHHHHHHcCCCCccc------cc----CcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10512 493 EVKDREEMRKIIGRYGLTGRQQ------VC----PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562 (629)
Q Consensus 493 ~~~~~~~~~~~l~~~gl~~~~~------~~----~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~ 562 (629)
. ...+++.++++..++.+... +. ....||||||||++|||||+++|+||||||||++||.++.+.+.+.
T Consensus 1322 ~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1322 D-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred C-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 3 35567777877776643221 11 2347999999999999999999999999999999999999999999
Q ss_pred Hhhc----CceEEEEecCHHHHHhhcCEEEEEeC----CEEEEecCCHHHHHH
Q psy10512 563 INDF----EGGLVLVSHDFRLINQVAEEIWICEN----GKVTKWEGNILDYKE 607 (629)
Q Consensus 563 l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~ 607 (629)
|.+. +.|+|+|||++..+. .||+|++|++ |+++...|+++++.+
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9886 469999999999985 5999999999 897656799887753
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-59 Score=572.26 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=169.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
.|+++||+|+|+++.+++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.++|. .+++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999655445999999999999999999999999999999999999999999999873 3688
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~ 537 (629)
+++|++. -++-|+.+++.... ...++++.++++..++.+.... .....||||||||++|||||++
T Consensus 1317 iVpQdp~---LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1317 IIPQAPV---LFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred EECCCCc---cccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999864 23458888875332 2356678888887766432211 1234799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||.++...+.+.|++. +.|+|+|+|+++.+.. ||+|+||++|+|++ .|+++++.+
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999875 5799999999999976 89999999999986 577776643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-59 Score=570.13 Aligned_cols=202 Identities=18% Similarity=0.245 Sum_probs=169.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
.|+++||+|+|+++.+++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.++|. ..++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 59999999999655445999999999999999999999999999999999999999999999873 3588
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~ 537 (629)
+++|++. + ++-|+.+++... . ...++++.++++..++.+.... .....||||||||++|||||++
T Consensus 1314 iVpQdp~--L-F~gTIr~NL~~~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1314 IIPQSPV--L-FSGTVRFNIDPF-S-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred EECCCCe--e-eCccHHHHcCCC-C-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999864 2 345888887532 2 2355678888888776432211 1234799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||.++...+.+.|++. +.|+|+|+|+++.+.. ||+|++|++|+|++ .|+++++.+
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~ 1458 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLS 1458 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999876 5799999999999976 99999999999986 588877643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=564.97 Aligned_cols=202 Identities=20% Similarity=0.236 Sum_probs=169.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+|+|+++.+++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.++|. .+++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999754445999999999999999999999999999999999999999999999873 3688
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc------ccC----cCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ------VCP----IRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~----~~~LSgGqkqrv~lAral~~ 537 (629)
+++|++. -++-|+.+++.. +.. ..++++.++++..++.+... +.. ...||||||||++|||||++
T Consensus 1364 iVpQdp~---LF~gTIr~NLdp-~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1364 IIPQDPV---LFSGSLRMNLDP-FSQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred EECCCCc---ccCccHHHHcCc-ccC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999864 234588888742 222 35567788888877643211 112 24699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||.++...+.+.|++. +.|||+|+|+++.+.. ||+|+||++|+|++ .|++++..+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999875 5699999999999976 89999999999986 688877654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-57 Score=552.28 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+|+|+++.+++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|. ..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 49999999999765556999999999999999999999999999999999999999999999873 3588
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc------c----CcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV------C----PIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~----~~~~LSgGqkqrv~lAral~~ 537 (629)
+++|++. -++-|+.+++.. +. ....+++.++++..|+.+.... . ....||||||||++|||||++
T Consensus 1388 iVpQdp~---LF~gTIreNIdp-~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1388 MIPQDPV---LFDGTVRQNVDP-FL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred EECCCCc---cccccHHHHhCc-cc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 9999863 235588888743 22 2456778899998887543211 1 225799999999999999999
Q ss_pred C-CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 A-PHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~-p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+ |+||||||||++||.++...+.+.|.+. +.|||+|+|+++.+.. ||+|++|++|+|++ .|+++++.+
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 8999999999999999999999999875 5799999999999965 89999999999985 688877753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=537.81 Aligned_cols=200 Identities=23% Similarity=0.346 Sum_probs=168.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+++|+++.+++|+|+||+|++||++||||++|||||||+++|+|+++ ++|+|.++|. ..++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 599999999997654569999999999999999999999999999999999997 7999999873 3688
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc------Cc----CcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC------PI----RQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~----~~LSgGqkqrv~lAral~~ 537 (629)
+++|++. -+.-|+.+++.. +. ...++++.++|+.+++.+..... ++ ..||||||||++|||||++
T Consensus 1296 ~IpQdp~---LF~GTIR~NLdp-~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1296 VIPQKVF---IFSGTFRKNLDP-YE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred EEeCCCc---cCccCHHHHhCc-cc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 9999864 234588888742 21 23567888999988875332211 22 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|+||||||||++||.++...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+|++ .|++.++.
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE-~g~p~~Ll 1439 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQ-YDSIQKLL 1439 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999875 4799999999999975 99999999999986 57776664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=535.42 Aligned_cols=200 Identities=20% Similarity=0.251 Sum_probs=164.3
Q ss_pred eEEEEEEEEEEc--CCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC---CCccEEEECCce-------eE
Q psy10512 399 VIMVQNVSFRYS--DDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT---PSVGMVRKNSHL-------RF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~~-------~~ 466 (629)
+|+++||++.|+ ++...+|+|||++|++|++++|+|||||||||||++|+|+.+ |++|+|.++|.. .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 478999999995 223459999999999999999999999999999999999998 788999998742 47
Q ss_pred EeeccchhcccCCCCCHHHHHhhc----CCC----hhhHHHHHHHHHHcCCCCcccccCcC----cCChhHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS----FPE----VKDREEMRKIIGRYGLTGRQQVCPIR----QLSDGQKCRVVFAYL 534 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~----~LSgGqkqrv~lAra 534 (629)
+|++|+.. +....|+.+++... .+. ....+.+.++++.+|+.+.. +..++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~-d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYA-DAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhC-CCeeCCCCCCCCHHHhhHHHHHHH
Confidence 89988742 34567888876421 111 12235678999999997543 44555 799999999999999
Q ss_pred HccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHH-HHhhcCEEEEEeCC-EEEEecCCH
Q psy10512 535 AWQAPH-LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRL-INQVAEEIWICENG-KVTKWEGNI 602 (629)
Q Consensus 535 l~~~p~-lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~ 602 (629)
|+.+|+ ||||||||+|||..+...+.+.|+++ +.|||++|||++. +...||++++|++| +++ +.|+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 999997 99999999999999999999999876 4689999999986 45779999999987 986 45654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=515.20 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=162.7
Q ss_pred eEEEEEEEEEEcC-----------CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCc--
Q psy10512 399 VIMVQNVSFRYSD-----------DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSH-- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 463 (629)
.+.++||++..+. +...+|+|+|+.|++|++++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988731 123589999999999999999999999999999999999874 7899998873
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhc----CCC----hhhHHHHHHHHHHcCCCCcccccCc-----CcCChh
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQS----FPE----VKDREEMRKIIGRYGLTGRQQVCPI-----RQLSDG 524 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgG 524 (629)
..++|++|... +....|+.+++... .+. ....+.+.++++.+||.+.. +..+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-DAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-CCccCCCCCCCcCHH
Confidence 23789998742 44567888876421 121 11234578899999997543 3343 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHH-HHHhhcCEEEEEeC-CEEEEec
Q psy10512 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFR-LINQVAEEIWICEN-GKVTKWE 599 (629)
Q Consensus 525 qkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~ 599 (629)
|||||+||++|+.+|+||||||||+|||+.+...+++.|+++ +.|||++||+++ .+..+||++++|++ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999999876 569999999998 47789999999996 8986 56
Q ss_pred CCH
Q psy10512 600 GNI 602 (629)
Q Consensus 600 g~~ 602 (629)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=408.23 Aligned_cols=227 Identities=26% Similarity=0.346 Sum_probs=197.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+|+||+..+|+||||+|.+||+++||||||||||||||||++++.|++|+|.+.+....... +
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~----------~ 71 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK----------D 71 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh----------h
Confidence 599999999999999999999999999999999999999999999999999999999988653211100 2
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
....|..++.++|++..++..+..+++..........+.+++++++.++|+.+||. +..+.+|.+||||||||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHH
Confidence 34556677778888888888787887776666667788889999999999999997 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~ 323 (629)
|+++|+++|+|||||+|||+.+.++.+.++++ |.|+|+|||++.|+..+||||++|++|++++.+.+.+.|..++.+
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 99999999999999999999999988877654 789999999999999999999999999999998777776655433
Q ss_pred H
Q psy10512 324 L 324 (629)
Q Consensus 324 ~ 324 (629)
+
T Consensus 231 R 231 (240)
T COG1126 231 R 231 (240)
T ss_pred H
Confidence 3
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=428.38 Aligned_cols=435 Identities=20% Similarity=0.304 Sum_probs=287.6
Q ss_pred eEEEEeCCeeeeEeeeEE-EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGCELLQDTMLE-LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~-i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
++..+||.. -|+=..|- ..+|.++||+||||.||||-+++|+|.+.|.-|... -++.+...+..+..
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~-------~pp~wdeVi~~FrG---- 146 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE-------DPPSWDEVIKRFRG---- 146 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC-------CCCCHHHHHHHhhh----
Confidence 356677631 12222232 368999999999999999999999999998766431 11111111111110
Q ss_pred HHHHHHHHHHHhc-----cCChhHHHHHHHHHhh-hhcc-ChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 171 RVRLEKLAEQLVA-----CEDDESQEQLMDIYDR-LDDI-SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 171 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
..+...+..+.. ...+.-.+.+..+... ...+ ......-...++.+.++|. ...+|.+++|||||.||++|
T Consensus 147 -tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aI 224 (591)
T COG1245 147 -TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAI 224 (591)
T ss_pred -hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHH
Confidence 111122222211 0000001111111000 0000 0111123567889999996 67899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
|.+|+++++++++|||||.||...+...-..++++ +++||+|.||+..++-++|-|.++.. + .|.|..+...
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG-~----pg~YGvvs~p 299 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG-E----PGVYGVVSKP 299 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec-C----CccceEeccc
Confidence 99999999999999999999999987777766655 57999999999999999998877753 1 1222222221
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCC-CC-CC
Q psy10512 321 RLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGK-IP-PP 398 (629)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 398 (629)
+.- ...+..|+..+ -.. +.+ .....++.|....+.. .. ..
T Consensus 300 ~sv---------------r~gIN~yL~Gy--l~~-------------EN~--------R~R~~~I~F~~~~~~~~~~~~~ 341 (591)
T COG1245 300 KSV---------------RVGINEYLKGY--LPE-------------ENV--------RFRPEEIEFEEKPPRDDKARDT 341 (591)
T ss_pred hHH---------------HHHHHHHHhcc--Cch-------------hcc--------cccccceeeeccCcccccccce
Confidence 110 01112222111 000 000 0112233343332211 11 34
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+++..++++.|++ .-|+-=.=+|..||+++++||||-|||||.++|+|.++|++|. ....++.|-+|.... +
T Consensus 342 lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~--~ 413 (591)
T COG1245 342 LVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISP--D 413 (591)
T ss_pred eeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecC--C
Confidence 5566666666642 1233333456677899999999999999999999999999998 556778999998753 4
Q ss_pred CCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 479 LDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 479 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
.+.|+.+++....+. ......-.++++-|+|... ..+++..|||||.|||+||.+|.++++|+|||||+++||.+.+-
T Consensus 414 ~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHH-HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 667887776544332 1122234567888888754 45789999999999999999999999999999999999999998
Q ss_pred HHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC
Q psy10512 558 ALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN 592 (629)
Q Consensus 558 ~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~ 592 (629)
.+.+.|+++ +.|.++|.||+.++.-++||++|++.
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 888888775 56899999999999999999999863
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=473.68 Aligned_cols=202 Identities=20% Similarity=0.319 Sum_probs=165.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC-----------ceeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-----------HLRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~~~ 467 (629)
-|+++|++.+|.++.+.||+||||+|++||.|||||..|||||||+.+|..+..|.+|+|.++| +.+++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 5999999999988777899999999999999999999999999999999999999999999987 24677
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc----------CcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC----------PIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~ 537 (629)
.++|++.. +.-|+..++- .+.. ..++++.++|+..+|....... -..++|-||||.|||||||++
T Consensus 1218 IIPQdPvL---FsGTvR~NLD-Pf~e-~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1218 IIPQDPVL---FSGTVRFNLD-PFDE-YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred eeCCCCce---ecCccccccC-cccc-cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 88888642 2334433321 1111 3456677777777664322211 225799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+++||+|||+|+++|+++-..+.+.|++. +.|||.|.|.++.+.. ||||+||++|+|++| |+|.++.+
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef-dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF-DSPAELLS 1362 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec-CChHHHHh
Confidence 99999999999999999999999999874 5799999999999987 899999999999976 55555543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=380.72 Aligned_cols=204 Identities=25% Similarity=0.458 Sum_probs=179.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
++|+++||+++|+. ..+|++|||+|.+||+++|+||||||||||||||.|+..|++|+|.++|. .+
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 47999999999964 35899999999999999999999999999999999999999999999883 25
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
+|+++|++. +.+.+|+++++... .+....++.+.++|+++||.+... .++.+|||||||||+|||||+.+|
T Consensus 79 vGmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 79 VGMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-AYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred cCeeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-hCccccCcHHHHHHHHHHHHcCCC
Confidence 789999864 67788999987532 344456778899999999987655 466999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+++|+|||||+|||+...++++.+.++ +.|+|+|||++.|+..+||||++|++|+|++ +|+++++..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHHhc
Confidence 999999999999999999999988776 5699999999999999999999999999975 678777643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=374.15 Aligned_cols=228 Identities=24% Similarity=0.323 Sum_probs=197.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+||.|+++.+++|+||+|++||+++|||||||||||+||+|++++.|++|.|.+++... ... .
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i--~~~---------d 69 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI--SDL---------D 69 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec--ccC---------C
Confidence 48999999999999999999999999999999999999999999999999999999999865432 111 1
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc-hhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK-EMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqrqRv~LAr 245 (629)
....|..++++.+++..++..+..+++..+ ..+..++..+..+++.++|+.+||++ ++.+|+|++|||||||||.+||
T Consensus 70 ~~~LRr~IGYviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 70 PVELRRKIGYVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred HHHHHHhhhhhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHH
Confidence 224677888888988888777666665554 45666788888999999999999986 6899999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~ 321 (629)
||+.+|+|||||||+++|||-++..|.+.+. ++++|||+||||++++..++|||++|++|+++.|+.|.+.+.++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999998887664 458999999999999999999999999999999998877766655
Q ss_pred HHHHH
Q psy10512 322 LELLE 326 (629)
Q Consensus 322 ~~~~~ 326 (629)
.+..+
T Consensus 229 n~FV~ 233 (309)
T COG1125 229 NDFVE 233 (309)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=383.62 Aligned_cols=227 Identities=26% Similarity=0.403 Sum_probs=190.4
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|++++++|.|+. ..+|+||||+|++||++||||+||||||||+|||++++.|++|++.+.+. ++...+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~--di~~l~~~-- 76 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ--DLTALSEA-- 76 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCE--ecccCChH--
Confidence 4899999999986 46999999999999999999999999999999999999999999988653 22221111
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
.....|..++++++++..+...+.. .+..+...+...+..+.++++.++|+.+||+ +..++++.+|||||||||
T Consensus 77 ----~Lr~~R~~IGMIFQhFnLLssrTV~-~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 77 ----ELRQLRQKIGMIFQHFNLLSSRTVF-ENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRV 150 (339)
T ss_pred ----HHHHHHhhccEEeccccccccchHH-hhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHH
Confidence 1223455666666666655444433 3344455566677888999999999999997 788999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
+|||||+.+|+|||+|||||+|||++...+.+.|++ +|.||++|||.|+.+.++|||+.+|++|++++.|...+.|
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999998864 4789999999999999999999999999999999988888
Q ss_pred HHHHHH
Q psy10512 318 CKTRLE 323 (629)
Q Consensus 318 ~~~~~~ 323 (629)
..++..
T Consensus 231 ~~Pk~~ 236 (339)
T COG1135 231 ANPKHA 236 (339)
T ss_pred cCcchH
Confidence 766443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=374.67 Aligned_cols=206 Identities=30% Similarity=0.437 Sum_probs=179.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEEe
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFAR 468 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~~ 468 (629)
.++|+++|+++.|+.. + +|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. .++||
T Consensus 2 ~~~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 2 MPMIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CcEEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 3579999999999643 4 999999999999999999999999999999999999999999998764 47999
Q ss_pred eccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|.......+..|+.+++..+. +...+.+.+.++|+++|+.+. .++++++|||||+|||.|||||+++|
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-RDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-hCCcccccCcHHHHHHHHHHHhccCC
Confidence 99987656677889999876531 122456889999999999865 46789999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++|||||||+|+|+.+...++++|.++ +.|||+||||+..+..+||+|+.|+.. +. ..|+++++..
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~-~~G~~~~~~~ 227 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI-ASGPPEEVLT 227 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-eccChhhccC
Confidence 999999999999999999999999876 569999999999999999999999654 43 4688776643
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=378.40 Aligned_cols=216 Identities=27% Similarity=0.372 Sum_probs=171.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.++++||+++|+++++|+|+||+|++|++++||||||||||||||+|+|+++|.+|+|.+.+.... ...
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~--~~~--------- 70 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA--SLS--------- 70 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh--hcC---------
Confidence 589999999999999999999999999999999999999999999999999999999988643211 000
Q ss_pred chHHHHHHHHHHHHHhc------cCChhHHHHHHHH--Hhhhhcc--ChhhHHHHHHHHHHhCCCCchhhhcccCCCChH
Q psy10512 167 VDEERVRLEKLAEQLVA------CEDDESQEQLMDI--YDRLDDI--SADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 236 (629)
.....+.+.+ .+...++.++... +.....+ ...+.++.+.++|+.+|+. ++.+|++.+||||
T Consensus 71 -------~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGG 142 (258)
T COG1120 71 -------PKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGG 142 (258)
T ss_pred -------HHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChh
Confidence 0011111111 1111122222211 1111112 2344556799999999996 7899999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||.|||||+++|+|||||||||+||+..+..+++.++++ +.|||+|+||++++.++||++++|++|++++.|.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 999999999999999999999999999999999999988765 5899999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q psy10512 313 NYEAFCKTR 321 (629)
Q Consensus 313 ~~~~~~~~~ 321 (629)
+.+.+..+.
T Consensus 223 p~evlT~e~ 231 (258)
T COG1120 223 PEEVLTEEN 231 (258)
T ss_pred cchhcCHHH
Confidence 887776543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=370.44 Aligned_cols=201 Identities=30% Similarity=0.473 Sum_probs=174.7
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
+|+++||+++|++ ..+++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|. ..++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 6899999999963 45999999999999999999999999999999999999999999999884 3689
Q ss_pred eeccchhcccCCCCCHHHHHhhc-C--------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQS-F--------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
|++|... ....+++.+.+..+ + +...+.+.+.++|+.+|+.+.. .+++.+|||||||||.|||||+++
T Consensus 80 ~vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 80 YVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-DRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EeccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-cCcccccChhHHHHHHHHHHHhcC
Confidence 9999863 44566777765432 1 1224556788999999998755 568999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|++|||||||++||+..+.+++++++++ +.|||+|+||++++.++||++++|++|+++. .|++.+.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~ev 226 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPEEV 226 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcchh
Confidence 9999999999999999999999999876 3689999999999999999999999999985 6776543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=368.36 Aligned_cols=203 Identities=25% Similarity=0.402 Sum_probs=176.8
Q ss_pred eEEEEEEEEEEcCC---CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 399 VIMVQNVSFRYSDD---GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
||++++|++.|... ...+++||||+|++||++||||.||||||||+|+|.++.+|++|+|.++|.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 58999999999642 245899999999999999999999999999999999999999999999872
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
.++|+++|++. +....|+.++++. +.++....+++.++|+.+||++... .++.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHHHHHHHHh
Confidence 46899999975 4455788877643 3444456788999999999996654 566899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
.+|+|||+|||||+|||++.+.++++|++. +.||++|||.++.+.++||||.||++|+|++ .|+..+.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~v 229 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSEV 229 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHHh
Confidence 999999999999999999999999998765 5799999999999999999999999999985 6766554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=355.53 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=176.0
Q ss_pred CeEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 398 PVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
++|+++|+++.|+.+. .+++++|||+|.+||++||+|++|||||||.++|+|+.+|+.|+|.++|.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999997543 13899999999999999999999999999999999999999999999883
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhcCC---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQSFP---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
..+.+++|++...+++..++.+.+..... -...++++.++|+.+||.....++++.+|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 34678899988778888887766543321 113455689999999999887778889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEe
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 598 (629)
+||||||||+||+..+..++++|.+. +-|+|+||||+..+..+||||+||++|++++.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 99999999999999999999998765 56999999999999999999999999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=355.98 Aligned_cols=220 Identities=25% Similarity=0.287 Sum_probs=179.4
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|++++|+++||++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|.+++.+ +......
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~--i~~ls~~------ 78 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED--IPQLSEE------ 78 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcc--hhccCHH------
Confidence 36999999999999999999999999999999999999999999999999999999999987543 2111100
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.....+.+++.++|+-..+...+..+|+.........++....++.+..-|+.+||.....+++|++||||+++|++|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 01122333444444444444444445444333344456777788889999999999977689999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+.+|+||++||||+||||.+...+.+++++ ++.|+|+||||++.+..+|||++++.+|+|.++|.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999998887777654 478999999999999999999999999999987654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=355.95 Aligned_cols=204 Identities=24% Similarity=0.349 Sum_probs=177.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
||+++|||+.|++ ..+++|+||+|+.||+++++|||||||||+||+|.+++.|++|+|.+++. .++|
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 5899999999963 34899999999999999999999999999999999999999999999873 4689
Q ss_pred eeccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCC-cccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
|+-|... +.+.+|+.+++.. ++......+++.++|+.+||+. ....+++++|||||||||.+||||+.+|+|
T Consensus 79 YviQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 79 YVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 9998864 6678899888753 2333345678999999999975 345667899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||+|||+++|||-++..+.+.+.+ ++.|||+||||++++..++|||++|++|+|+.+ ++++++..
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHHHh
Confidence 999999999999999998887755 478999999999999999999999999999864 66666654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=351.48 Aligned_cols=206 Identities=28% Similarity=0.389 Sum_probs=178.8
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|++++|+++|++ ..|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|.
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 578999999999964 35999999999999999999999999999999999999999999999873
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
.++|.++|+- .+..++|+++++... +++...++.+..-|+.+||.+...+..+++|||||++||+||||++
T Consensus 84 r~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 84 RKRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred HhheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 3588999874 356678899887532 2332344556667899999987566677999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|+||++||||+||||.+...+-++|.++ +.|+|+||||++.+..+|||++++.+|+|. |.|++++..+
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 999999999999999999988888777654 679999999999999999999999999997 7999988765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=363.70 Aligned_cols=219 Identities=22% Similarity=0.357 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+.|+++|++++|++.++|+||||+|++|++++||||||||||||+|+|.|+++|..|+|.+++....-.. ....+.++.
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~-~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR-KRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-cCCeEEEcC
Confidence 3599999999999768999999999999999999999999999999999999999999998653211000 011122221
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHH--Hhhh--hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDI--YDRL--DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l--~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
+.. .+... .+.++.++... +... .........+.+.++|+.+|+. ++.++++.+|||||+|||
T Consensus 82 Q~~-----------~~d~~-fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 82 QKS-----------SVDRS-FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRV 148 (254)
T ss_pred ccc-----------ccCCC-CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHH
Confidence 110 01111 12233333322 1111 1112233468899999999997 789999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
.|||||+++|++|||||||+++|+.++..++++|+++ |+|||+||||++.+..+||+|++|+. ++.++|.+.+.+.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 9999999999999999999999999999999988655 78999999999999999999999965 6667777666554
Q ss_pred H
Q psy10512 319 K 319 (629)
Q Consensus 319 ~ 319 (629)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 3
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=350.49 Aligned_cols=213 Identities=25% Similarity=0.386 Sum_probs=184.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC--------------c
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS--------------H 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 463 (629)
.+|+++||++.|+++ ..+|++|||+|++||+++||||||||||||||+|.|+..|++|+|.+++ +
T Consensus 2 ~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 479999999999754 4599999999999999999999999999999999999999999999887 2
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-------------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHH
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-------------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 530 (629)
..+|+++|++. +....++++++..+ +....++..+-++|+++|+.+... ++..+|||||||||+
T Consensus 81 ~~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~LSGGQQQRVa 157 (258)
T COG3638 81 RDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTLSGGQQQRVA 157 (258)
T ss_pred HhceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccCCcchhHHHH
Confidence 46899999864 55667777765432 223356677889999999987654 578999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+++|+|||.|||+++|||.+.+.+++.|++. +.|||+..|+++++.++||||+-|.+|+|+ |+|+..+..
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhh
Confidence 999999999999999999999999999999999875 579999999999999999999999999997 899998877
Q ss_pred HHHHHHHHH
Q psy10512 607 ETLRAKVLK 615 (629)
Q Consensus 607 ~~~~~~~~~ 615 (629)
+....++..
T Consensus 237 ~~~~~~iYg 245 (258)
T COG3638 237 DEALDEIYG 245 (258)
T ss_pred HHHHHHHhc
Confidence 655555444
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=354.57 Aligned_cols=193 Identities=28% Similarity=0.403 Sum_probs=167.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------eeEEeecc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQ 471 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~~~~~~q 471 (629)
.++.++++++.|+. ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|. ..++|++|
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 46899999999964 45999999999999999999999999999999999999999999999874 37899999
Q ss_pred chhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 472 HLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+.. +.+-.|+.+++.... +.....+++.++|+.+||.+... +++++|||||||||+|||||+.+|+||||||
T Consensus 80 ~~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 80 EDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-KYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred cCc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-cCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 864 445568888765432 22234567999999999987654 5679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEE
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKV 595 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i 595 (629)
|+++||..++..+.+.|.++ +.|||+||||++++-.++|||++|.+ |+|
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999998888777553 68999999999999999999999998 445
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=351.67 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=166.4
Q ss_pred eeEEEEeEEEEeCCee----eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 86 RDVKIANFSITFHGCE----LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~----~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
++++++|+++.|++.. +|++|||+|.+||++||+|+||||||||.|+|+|+..|+.|+|.+.+.... ......
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~--~~~~~~- 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA--PKKRAK- 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC--ccccch-
Confidence 4699999999999877 999999999999999999999999999999999999999999988653211 110000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
.....+..++|... ...+..+..... .+.+......+.++++.++|+.+|+....+++++.+|||||+||
T Consensus 79 -------~~~~~VQmVFQDp~~SLnP~~tv~~~l--~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 79 -------AFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred -------hhccceeEEecCCccccCcchhHHHHH--hhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 00000111111110 011111122111 11122122334556699999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||||..+|++||||||||+||+..+..++++|.+ ++.|+|+||||+..+..+||||++|++|.+++....
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999998854 467999999999999999999999999999987544
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=347.57 Aligned_cols=219 Identities=25% Similarity=0.356 Sum_probs=177.0
Q ss_pred eeEEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
++|+++||++.| +++.+|+||||+|++||+++||||||||||||||+|+|+..|+.|++.+.+.. +......
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~--i~~~~~k----- 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ--ITKLKGK----- 74 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc--hhccchH-----
Confidence 469999999999 78899999999999999999999999999999999999999999988776432 2111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHH-------HhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDI-------YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
.....+..++++++++...+......+++.. +..+..+-..+.+.++.++|+.+|+. +...++.++|||||
T Consensus 75 -~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQ 152 (258)
T COG3638 75 -ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQ 152 (258)
T ss_pred -HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcch
Confidence 1122344455555655555444444444321 22233444556678899999999997 56778899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+|||+|||||+++|+|||.|||+++|||.+...+++.|++. |.|+|+..|+++.+.+|||||+-|++|+|+++|.+
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 99999999999999999999999999999999999998754 78999999999999999999999999999976544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=355.70 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=160.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.+.+++++++|++..+|+|+||+|.+||+++||||||||||||||+|+|++.|+.|+|.+.+....-+. ..+..+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~---~~~~~v-- 77 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG---PDIGYV-- 77 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC---CCEEEE--
Confidence 489999999999999999999999999999999999999999999999999999999988653321111 111111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+|+...++..+..+|+ .+...+......+.++++.++|+.+||. ...+++|++|||||||||+||||
T Consensus 78 -----------FQ~~~LlPW~Tv~~NV-~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARA 144 (248)
T COG1116 78 -----------FQEDALLPWLTVLDNV-ALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARA 144 (248)
T ss_pred -----------eccCcccchhhHHhhh-eehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHH
Confidence 1222222222222222 2222222345566677999999999997 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKR 305 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G 305 (629)
|+.+|+|||||||+++||.-++..+.+.| .+.+.|||+||||.+++-.++|||++|.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999988777655 445789999999999999999999999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=378.50 Aligned_cols=223 Identities=25% Similarity=0.352 Sum_probs=186.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++||+..+++|+||+|++||+++|+||||||||||||+|+|++.|++|.|.+.+.... .
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~-------------~ 71 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDIT-------------D 71 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC-------------C
Confidence 599999999999999999999999999999999999999999999999999999999988654321 1
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
++..+..+..++|....++..+..+|+.... .+.. ....+..+++.++|+.+++. ++.++++++|||||||||||||
T Consensus 72 lpp~kR~ig~VFQ~YALFPHltV~~NVafGL-k~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 72 VPPEKRPIGMVFQSYALFPHMTVEENVAFGL-KVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred CChhhcccceeecCcccCCCCcHHHHhhhhh-hhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHH
Confidence 2334455666677766666655555443222 2222 23345778999999999997 5899999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~ 321 (629)
||+.+|+|||||||.|+||..-+..+...|+ +.|.|.|+||||.+++..++|||++|++|+|...|.+.+.|..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9999999999999999999998887776554 558999999999999999999999999999999999988887765
Q ss_pred HHH
Q psy10512 322 LEL 324 (629)
Q Consensus 322 ~~~ 324 (629)
...
T Consensus 230 ~~f 232 (352)
T COG3842 230 TRF 232 (352)
T ss_pred hHH
Confidence 433
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=408.38 Aligned_cols=333 Identities=22% Similarity=0.264 Sum_probs=229.5
Q ss_pred HHHHHHHHhCCCCchh-hhcccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q psy10512 210 ARAANILHGLGFTKEM-QQKKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY---KRILV 283 (629)
Q Consensus 210 ~~~~~~L~~lgl~~~~-~~~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvI 283 (629)
.++. +|+.+||. ++ .++++.+|||||+|||+||+||+.+| +||||||||++||+..+.+|.+.|+++ |.|||
T Consensus 468 ~rl~-~L~~vGL~-~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVI 545 (943)
T PRK00349 468 ERLK-FLVDVGLD-YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLI 545 (943)
T ss_pred HHHH-HhhccccC-CCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4443 78889996 34 68999999999999999999999997 999999999999999999999987654 78999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLA 357 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (629)
+||||++++. .||+|++| ++|++++. |+++.+...... +. ..+.
T Consensus 546 vVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~-g~~~e~~~~~~~-l~----------------~~~l----------- 595 (943)
T PRK00349 546 VVEHDEDTIR-AADYIVDIGPGAGVHGGEVVAS-GTPEEIMKNPNS-LT----------------GQYL----------- 595 (943)
T ss_pred EEeCCHHHHH-hCCEEEEeccccCCCCCEEeec-cCHHHHhcChhh-ee----------------ehhh-----------
Confidence 9999999987 69999999 88999865 454443211000 00 0000
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCC
Q psy10512 358 RQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNG 437 (629)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NG 437 (629)
.... ....... + .....+.|++++++. . .|+++||+|+.|++++|+|+||
T Consensus 596 -------------~~~~-~~~~~~~-------~--~~~~~~~L~v~~l~~------~-~L~~isl~Ip~GeivgVtGvsG 645 (943)
T PRK00349 596 -------------SGKK-KIEVPKE-------R--RKGNGKFLKLKGARE------N-NLKNVDVEIPLGKFTCVTGVSG 645 (943)
T ss_pred -------------cccc-ccccccc-------c--cCCCcceEEecCCcc------C-CcCceEEEEeCCCEEEEEcCCC
Confidence 0000 0000000 0 011234789999862 1 4899999999999999999999
Q ss_pred CchHHHHHHHH---------cCCCCCccE------------EEECC-------c-----------------------eeE
Q psy10512 438 AGKSTLLNLIY---------GDLTPSVGM------------VRKNS-------H-----------------------LRF 466 (629)
Q Consensus 438 sGKSTLlk~l~---------G~~~p~~G~------------i~~~~-------~-----------------------~~~ 466 (629)
||||||++-+. +...+..+. |.++. + ...
T Consensus 646 SGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~ 725 (943)
T PRK00349 646 SGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKAR 725 (943)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCcccccc
Confidence 99999998763 111111100 11100 0 000
Q ss_pred Eeeccchhccc----------------------------------------------------CCCCCHHHHHhhcCCCh
Q psy10512 467 ARYHQHLHELL----------------------------------------------------DLDISPLDYMLQSFPEV 494 (629)
Q Consensus 467 ~~~~q~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~ 494 (629)
+|..+++..+. ...+++.+.+.. +...
T Consensus 726 g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~-f~~~ 804 (943)
T PRK00349 726 GYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEF-FEAI 804 (943)
T ss_pred CCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHH-HHhc
Confidence 11111110000 001122211110 0000
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---Cc
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---EG 568 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~ 568 (629)
.......+.|..+||......+++.+|||||+|||.||++|+.+| +++||||||+|||+..+..|++.|.++ +.
T Consensus 805 ~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~ 884 (943)
T PRK00349 805 PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGN 884 (943)
T ss_pred hhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 011234567888999754445678999999999999999999999 999999999999999999999998876 56
Q ss_pred eEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 569 GLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 569 ~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|||+||||++++. .||+|++| ++|+|+ +.|+++++.+
T Consensus 885 TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 885 TVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred EEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 9999999999995 79999999 689997 5788877653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=348.06 Aligned_cols=195 Identities=28% Similarity=0.424 Sum_probs=168.1
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+++++||++.|..+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.+++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 468999999996432 24899999999999999999999999999999999999999999998862
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc--CCCh---hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS--FPEV---KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..+||++|.+. +-.++|+.+++... +... ...+.+..+++.+||.+...++++.+|||||||||+|||||+
T Consensus 81 R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 35899999864 56778999886521 1111 235677889999999877665778999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
.+|++||.||||.+||.++.+.++++|.++ +.|||+||||...+. +|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999999776 459999999999885 79999999999954
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=420.72 Aligned_cols=329 Identities=21% Similarity=0.285 Sum_probs=227.5
Q ss_pred HHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH
Q psy10512 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQ 289 (629)
Q Consensus 215 ~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~ 289 (629)
.|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||++||+..+..|.+.|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4557788632258899999999999999999999999 899999999999999999999888754 68999999999
Q ss_pred HHHHhhcceeEEEc------CCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q psy10512 290 DFLNGVCTNIIHLD------KRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSK 363 (629)
Q Consensus 290 ~~l~~~~d~ii~l~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (629)
++ ..+||+|++|. +|++++. |+.+.+...... + ...+.
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv~~-G~~~eil~~~~~---------------l--~~~~l----------------- 582 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVLFN-GSPREFLAKSDS---------------L--TAKYL----------------- 582 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEEEe-cCHHHHhhChHH---------------H--HHHHh-----------------
Confidence 95 57999999996 6788764 454443211000 0 00000
Q ss_pred HHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHH
Q psy10512 364 EKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTL 443 (629)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTL 443 (629)
........ |.......+.|++++++. . .|+++||+|+.|++++|+|+||||||||
T Consensus 583 --------~~~~~~~~----------~~~~~~~~~~L~l~~~~~------~-~Lk~isl~Ip~Geiv~VtG~nGSGKSTL 637 (1809)
T PRK00635 583 --------RQELTIPI----------PEKRTNSLGTLTLSKATK------H-NLKDLTISLPLGRLTVVTGVSGSGKSSL 637 (1809)
T ss_pred --------cCcccccC----------cccccCCCCeEEEecccc------C-CccceEEEEcCCcEEEEEcCCCCCHHHH
Confidence 00000000 000001124688998862 1 5999999999999999999999999999
Q ss_pred HH---------HHHcCCCCCc------------------------cEEEECC-----c---------eeEE-----eecc
Q psy10512 444 LN---------LIYGDLTPSV------------------------GMVRKNS-----H---------LRFA-----RYHQ 471 (629)
Q Consensus 444 lk---------~l~G~~~p~~------------------------G~i~~~~-----~---------~~~~-----~~~q 471 (629)
++ .|.|...+.. +.+++-+ + ...+ +.++
T Consensus 638 l~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn 717 (1809)
T PRK00635 638 INDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFN 717 (1809)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeec
Confidence 99 6666543311 1122100 0 0000 0011
Q ss_pred c---------------h---hc------------------ccCCCCCHHHHHhhc-------CC-ChhhHHHHHHHHHHc
Q psy10512 472 H---------------L---HE------------------LLDLDISPLDYMLQS-------FP-EVKDREEMRKIIGRY 507 (629)
Q Consensus 472 ~---------------~---~~------------------~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~l~~~ 507 (629)
. . .. ......++.+.+... +. .....+.+ ++|+.+
T Consensus 718 ~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~v 796 (1809)
T PRK00635 718 TPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSL 796 (1809)
T ss_pred CCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHc
Confidence 0 0 00 000112222222110 10 11223344 578899
Q ss_pred CCCCcccccCcCcCChhHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHH
Q psy10512 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAW---QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLIN 581 (629)
Q Consensus 508 gl~~~~~~~~~~~LSgGqkqrv~lAral~---~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~ 581 (629)
||......+++.+|||||+|||+||++|+ .+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i- 875 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV- 875 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-
Confidence 99754345688999999999999999997 699999999999999999999999998765 56899999999999
Q ss_pred hhcCEEEEEe------CCEEEEecCCHHHHHH
Q psy10512 582 QVAEEIWICE------NGKVTKWEGNILDYKE 607 (629)
Q Consensus 582 ~~~d~i~~l~------~G~i~~~~g~~~~~~~ 607 (629)
.+||++++|. +|+++ ..|+++++..
T Consensus 876 ~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 876 KVADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 7999999996 78886 5788887754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=337.30 Aligned_cols=216 Identities=24% Similarity=0.375 Sum_probs=178.6
Q ss_pred eEEEEeEEEEeCCee-eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFHGCE-LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~~~~-~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|++.+++++|+... +++||||+++.|+++||+|||||||||+||+|++++.|++|.+.+.+.+..-.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p---------- 70 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP---------- 70 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh----------
Confidence 488999999999876 999999999999999999999999999999999999999999999765421111
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
...+..++-...+ ..++...+.+++...+.++..+...+.++++.++.+.|++. +..++.+.+||-|+||||+|||
T Consensus 71 --~~vrr~IGVl~~e-~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iAR 146 (245)
T COG4555 71 --SFVRRKIGVLFGE-RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIAR 146 (245)
T ss_pred --HHHhhhcceecCC-cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHH
Confidence 0111111111111 11223345566666677787888888899999999999996 7889999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||+++|++|+|||||||||..++..+.+.+++. +++||++||+++++..+||+|++|++|++++.+.....
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 999999999999999999999999999887655 68999999999999999999999999999976554443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=339.15 Aligned_cols=228 Identities=23% Similarity=0.318 Sum_probs=183.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-----CceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~-----g~i~i~~~~~~~~~~~~~~~ 161 (629)
.++++||++.||++.+|+|||+.|+++.+++||||||||||||||+|+.+....+ |.|.+ .++++....
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~--~g~ni~~~~---- 80 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL--DGKNIYDPK---- 80 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE--CCeeccCCC----
Confidence 5899999999999999999999999999999999999999999999999887776 44443 333332211
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch---hhhcccCCCChHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE---MQQKKTKDFSGGWR 238 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~---~~~~~~~~LSGGqr 238 (629)
.++...|.++++++++...++ .+..++ .....++..+.....++.++..|+...|+++ .+++.+..||||||
T Consensus 81 ---~d~~~lRr~vGMVFQkPnPFp-~SIydN-VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 81 ---VDVVELRRRVGMVFQKPNPFP-MSIYDN-VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred ---CCHHHHHHHheeeccCCCCCC-chHHHH-HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 122345667777766655543 233333 3333344444446677889999999988754 45677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||++|||||+.+|+|||||||||+|||.+...+++++.+++ -|||+|||+|..+.+++|++.++..|++++++.+...
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999988774 6999999999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q psy10512 317 FCKTRLELL 325 (629)
Q Consensus 317 ~~~~~~~~~ 325 (629)
|..++.++.
T Consensus 236 F~~P~~~~T 244 (253)
T COG1117 236 FTNPKHKRT 244 (253)
T ss_pred hcCccHHHH
Confidence 877665443
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=402.65 Aligned_cols=327 Identities=20% Similarity=0.266 Sum_probs=221.4
Q ss_pred HHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH
Q psy10512 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQ 289 (629)
Q Consensus 215 ~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~ 289 (629)
.|..+||.....++++.+|||||+|||+||++|+.+| .+|||||||++||+..+..|.+.|+++ |.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4777888532268999999999999999999999986 899999999999999999999988654 67999999999
Q ss_pred HHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q psy10512 290 DFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSK 363 (629)
Q Consensus 290 ~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (629)
+++. +||+|++| ++|+|++.+ +.+.+..... .+. ..+
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~~g-~~~el~~~~~------------------~lt---~~~-------------- 592 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVVASG-TPEEILANPD------------------SLT---GQY-------------- 592 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEeecc-CHHHHhcCch------------------hee---eec--------------
Confidence 9987 89999999 899998654 4333211000 000 000
Q ss_pred HHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHH
Q psy10512 364 EKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTL 443 (629)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTL 443 (629)
........... . ..+...+.|+++|++. . .|+++||+|+.|++++|+|+||||||||
T Consensus 593 -------l~~~~~~~~~~-~--------~~~~~~~~l~l~~~~~------~-~Lk~vsl~Ip~Geiv~VtGvsGSGKSTL 649 (924)
T TIGR00630 593 -------LSGKKKIEVPK-E--------RRPGNGKFLTLKGARE------N-NLKNITVSIPLGLFTCITGVSGSGKSTL 649 (924)
T ss_pred -------ccccccccccc-c--------ccCCCcceEEEEeCcc------C-CcCceEEEEeCCCEEEEECCCCCCHHHH
Confidence 00000000000 0 0011234789999873 1 4999999999999999999999999999
Q ss_pred HHHHH---------c-CCCCC-----cc------EEEECCc-------e-------------------------------
Q psy10512 444 LNLIY---------G-DLTPS-----VG------MVRKNSH-------L------------------------------- 464 (629)
Q Consensus 444 lk~l~---------G-~~~p~-----~G------~i~~~~~-------~------------------------------- 464 (629)
++-+. + ...|. .| .|.++.. .
T Consensus 650 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~ 729 (924)
T TIGR00630 650 INDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGR 729 (924)
T ss_pred HHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhh
Confidence 98322 1 11111 11 0111100 0
Q ss_pred --------------eEEeeccchhccc------------------------------CCCCCHHHHHhhcCCChhhHHHH
Q psy10512 465 --------------RFARYHQHLHELL------------------------------DLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 465 --------------~~~~~~q~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
..|++.-++.... .+++++.+.+.. +.........
T Consensus 730 FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f-~~~~~~i~~~ 808 (924)
T TIGR00630 730 FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEF-FEAVPSISRK 808 (924)
T ss_pred cCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHH-HHhccchhHH
Confidence 0000000000000 000011110000 0000011234
Q ss_pred HHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEe
Q psy10512 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ---APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVS 574 (629)
Q Consensus 501 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~---~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vs 574 (629)
.++|..+||......+++.+|||||+|||.||++|+. +|+++||||||+|||+.++..|.+.|.++ +.|||+||
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678889997544456889999999999999999997 59999999999999999999999999876 56899999
Q ss_pred cCHHHHHhhcCEEEEE------eCCEEEEecCCHHH
Q psy10512 575 HDFRLINQVAEEIWIC------ENGKVTKWEGNILD 604 (629)
Q Consensus 575 Hd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~ 604 (629)
||++++. .||+|++| ++|+|+ +.|++++
T Consensus 889 H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 889 HNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred CCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 9999995 69999999 699997 5787654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=328.68 Aligned_cols=239 Identities=23% Similarity=0.351 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh--hhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL--TCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~--~~~ 164 (629)
.|+++|+.++||...+|++|||+-++|+++.|||.||||||||||||+-++.|..|.|.+++............+ ..-
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 489999999999999999999999999999999999999999999999999999999988765433322211111 011
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.++...|.++.++++.+..+...+..++.++..-..-.....++.+++..+|..+|+. +..+.++..|||||+||++||
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHH
Confidence 1233445667777777776666666666666555555567788889999999999996 567899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKT---YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~ 321 (629)
|||+.+|+++|+|||||+|||+-.-+++..+++ .|+|+++|||.+.|+..+++++++|++|.|.+.|.|.+.|..+.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence 999999999999999999999998888777655 48999999999999999999999999999999998888887665
Q ss_pred HHHHH
Q psy10512 322 LELLE 326 (629)
Q Consensus 322 ~~~~~ 326 (629)
.+++.
T Consensus 245 S~Rlk 249 (256)
T COG4598 245 SPRLK 249 (256)
T ss_pred CHHHH
Confidence 55443
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=330.73 Aligned_cols=197 Identities=29% Similarity=0.437 Sum_probs=173.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
||+++||++.|+.+ +.+|+||||+|++||++-|+||||||||||||+|++..+|++|.|++++. .
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 58999999999876 55999999999999999999999999999999999999999999998763 4
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|.++|++. +-.+.|++++++.. .+....++++.++|+.+||.+.... .+.+|||||||||+||||++.+|
T Consensus 80 ~IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 80 QIGVVFQDFR--LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred eeeeEeeecc--ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCC
Confidence 6899999875 44667888887542 3344567789999999999877654 45899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEec
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 599 (629)
++||.||||.+|||+....+++++.++ +.|||+.|||.+++..+-.|++.+++|+++..+
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999888766 568999999999999999999999999998643
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=350.23 Aligned_cols=206 Identities=29% Similarity=0.430 Sum_probs=178.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
+++.+++++|.|+++ ..+++++||+|.+|++++|+|+||||||||+++|+|+++|++|.|.+++. ..
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 478999999999765 45999999999999999999999999999999999999999999988763 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|+++|++..++. ..|+.+.+..+ .+.....+++.++|+.+|+.+. .++++..|||||||||+||.+|+.+|+
T Consensus 81 vG~VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 81 VGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred eEEEEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHHHcCCC
Confidence 8999999876654 44666655432 2332356778899999999876 456789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||++||+.++..+++.+.++ +.|||++|||++++..+|||+|+|++|+++ ++|++.++.+
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~ 228 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFN 228 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhh
Confidence 99999999999999999999999887 358999999999999999999999999996 6888766543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=347.41 Aligned_cols=212 Identities=26% Similarity=0.410 Sum_probs=165.4
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|+|+..|++|.+.+.+.. +...+....
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d--~~~l~~~~~-- 77 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD--LTKLSEKEL-- 77 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE--cCcCCHHHH--
Confidence 679999999964 369999999999999999999999999999999999999999998886522 221111000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
....+..++.++|++...+..+..+++. +...+..........++..+++.+|+.+...+++|.+|||||||||||
T Consensus 78 ---~~~R~~~iGfvFQ~~nLl~~ltv~ENv~-lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 78 ---AKLRRKKIGFVFQNFNLLPDLTVLENVE-LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred ---HHHHHHhEEEECccCCCCCCCCHHHHHH-hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHH
Confidence 0011223344455555555555555443 333333333335567888999999998555558899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
||||+.+|+|||.||||.+||.++...+++.|.++ +.|||+||||...+. +|||++.|.+|++.
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 99999999999999999999999999999988655 679999999998877 89999999999854
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=366.14 Aligned_cols=219 Identities=25% Similarity=0.373 Sum_probs=183.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||++.||+..+|+|+||+|+.||+++|+||||||||||||+|+|++.|++|+|.|.+....-
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~------------- 69 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD------------- 69 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-------------
Confidence 4999999999998669999999999999999999999999999999999999999999987543221
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+.....+..++|+...++. .++.+++.+..++.....++.++++.++++.++++ +++++++.+||||||||||||||
T Consensus 70 l~P~~R~iamVFQ~yALyPh-mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRA 147 (338)
T COG3839 70 LPPEKRGIAMVFQNYALYPH-MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARA 147 (338)
T ss_pred CChhHCCEEEEeCCccccCC-CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHH
Confidence 11112222333444444444 44444555555555667788899999999999997 68899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
|+.+|+++|||||+|+||...+..+...|++ ++.|+|+||||..++..++|||++|++|+|...|.+.+.|.+.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999998887776654 5789999999999999999999999999999999998887654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=354.73 Aligned_cols=223 Identities=24% Similarity=0.336 Sum_probs=176.9
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecc-cCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR-EMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~-~~~~~~~~~~~~~ 164 (629)
|+|+++|+++.|+...+++||||+|+.||.++|+||||||||||||+|+|++.|+.|.|.+++..- +..
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~---------- 70 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS---------- 70 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh----------
Confidence 468999999999999999999999999999999999999999999999999999999998754200 000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhh-hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR-LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
........++.+++....++..+..+++...... ....+......++.++|..+.|+ .+.++++.+|||||||||||
T Consensus 71 -~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 71 -NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred -ccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHH
Confidence 0111222334444444444444433333221111 11233456778999999999997 68999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
||||+.+|++||||||+++||..-+..|..+|+ +++.|.|+||||++++..+||||++|++|+|...+.+.+.|..
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 999999999999999999999988776666554 5589999999999999999999999999999999888887754
Q ss_pred H
Q psy10512 320 T 320 (629)
Q Consensus 320 ~ 320 (629)
.
T Consensus 229 P 229 (345)
T COG1118 229 P 229 (345)
T ss_pred C
Confidence 3
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=351.74 Aligned_cols=222 Identities=27% Similarity=0.373 Sum_probs=171.1
Q ss_pred eeEEEEeEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
++++++|++++|++. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.+.+...... ..
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~-~~------- 73 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE-KS------- 73 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccch-hh-------
Confidence 368999999999775 899999999999999999999999999999999999999999997654321100 00
Q ss_pred hhchHHHHHHHHHHHHHhc-cCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVA-CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
....+...+.++|+... +...+..+++...... ..++.++++.++.++|+.+|+. +++++++.+|||||||||+|
T Consensus 74 --~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 74 --LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred --HHHhhcceEEEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHh
Confidence 00000111111111000 1112222222211111 2344556889999999999997 56899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|.+|+++|++|||||||++||+.++.++++.++++ +.|+|++|||++++..+||++++|++|+++..|.+++.+..
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999998776 47999999999999999999999999999988877666543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=382.62 Aligned_cols=208 Identities=36% Similarity=0.575 Sum_probs=182.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.+|+++|+++.|+. . .+|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+..+++|+.|+.. .
T Consensus 2 ~~i~~~~ls~~~g~-~-~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~ 77 (530)
T COG0488 2 SMITLENLSLAYGD-R-PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--L 77 (530)
T ss_pred ceEEEeeeEEeeCC-c-eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--c
Confidence 47999999999953 3 489999999999999999999999999999999999999999999998889999999864 3
Q ss_pred CCCCCHHHHHhhcCCC-----------------------------------hhhHHHHHHHHHHcCCCCcccccCcCcCC
Q psy10512 478 DLDISPLDYMLQSFPE-----------------------------------VKDREEMRKIIGRYGLTGRQQVCPIRQLS 522 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 522 (629)
+...|+.+++...+.. ...+.++..+|..+|++.. .+++++||
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LS 155 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLS 155 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcC
Confidence 4444666554332211 0123567788889999865 57999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 523 DGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 523 gGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
||||.||+||+||+.+|++|||||||||||.+++.+|.+.|.++.+|||+||||.+|+..+|++|+.++.|++..|.|+|
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy10512 603 LDYKETLRA 611 (629)
Q Consensus 603 ~~~~~~~~~ 611 (629)
+.|.+....
T Consensus 236 ~~~~~~r~~ 244 (530)
T COG0488 236 SSYLEQKAE 244 (530)
T ss_pred HHHHHHHHH
Confidence 999875433
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=357.49 Aligned_cols=206 Identities=25% Similarity=0.376 Sum_probs=176.5
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------ee
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LR 465 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ 465 (629)
..++|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 4 ~~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred CCceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 3468999999999963 35999999999999999999999999999999999999999999998763 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhh--cC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQ--SF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|... +...+|+.+++.. .. +......++.++++.+++... .++++..|||||||||+||+||+.+|+
T Consensus 82 ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 82 VGVVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-ADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred EEEEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-hcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 899998753 4456788877642 11 111234567789999999754 456789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||+|||+.++..+++.|.++ +.|||++||+++++..+||+|++|++|+++ +.|+++++.+
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 227 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIE 227 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999876 468999999999999999999999999997 5788887754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=360.59 Aligned_cols=205 Identities=24% Similarity=0.341 Sum_probs=177.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEE
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFA 467 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~ 467 (629)
.+.|+++||++.|+ ...+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.++|. ..++
T Consensus 3 ~~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 3 KPALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred CceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 45799999999997 345899999999999999999999999999999999999999999999874 4689
Q ss_pred eeccchhcccCCCCCHHHHHhhcCC-----C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFP-----E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+++|+.. +++.+|+.+++..+.. . ....+++.++|+.++|.+... +++.+|||||||||+|||||+.+|++
T Consensus 81 ~VFQ~YA--LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 81 MVFQSYA--LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred eeecCcc--cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHHHHHHHHHhhcCcch
Confidence 9999864 6788999999765543 1 124468999999999998665 46699999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||||.++||..-+..+...|++ .+.|.|+||||.+++..++|||++|++|+|. ..|+++++-.
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~ 226 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYE 226 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhh
Confidence 999999999999888777766654 4779999999999999999999999999997 4688777543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=360.75 Aligned_cols=204 Identities=21% Similarity=0.327 Sum_probs=173.5
Q ss_pred eEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
||+++||+++|+.+ ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999999532 235899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +....|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-DSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHh
Confidence 25889999863 34456888776432 12223345678999999998654 56779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||++||+.++..++++|+++ +.|||+||||++++..+||+|++|++|+++ ..|++.++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999998775 569999999999999999999999999997 468776653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=324.01 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=176.5
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++||++.|++ .++|+||||+|++||++.|+||||||||||||+|++.+.|+.|.+.+++.+. ..-.. .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl--~~l~~------~ 72 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL--SRLKG------R 72 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeec--ccccc------c
Confidence 4899999999964 5599999999999999999999999999999999999999999998865332 11111 1
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
+++..|..++.++|.+...++.++.+++. +..++......+.+.++.++|+.+||. +..+..|.+|||||||||+|||
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA-~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVA-LPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhh-hhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHH
Confidence 22344555555566555555555555443 333444566778889999999999997 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKT---YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|++.+|+|||.||||.+|||+....+++.+.+ .|.||||.|||.+.++.+--|++.+++|+++.+.
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999998888777654 5789999999999999999999999999998754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.34 Aligned_cols=221 Identities=24% Similarity=0.396 Sum_probs=168.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|++.+.+.. +.......+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~--i~~~~~~~l- 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD--LTTLSNSEL- 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--CCcCCHHHH-
Confidence 3899999999952 479999999999999999999999999999999999999999999876532 211100000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+..+.+++++...++..+..+++ ............+..+++.++|+.+|+. +..++++.+|||||||||+
T Consensus 78 -----~~~r~~Ig~v~Q~~~l~~~~tv~eni-~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 -----TKARRQIGMIFQHFNLLSSRTVFGNV-ALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred -----HHHhcCEEEEECCccccccCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHH
Confidence 00011111112221222222233333 2222222334445667889999999997 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++.+++++|+++ +.|||+||||++.+..+||+|++|++|++++.+...+.+
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999988764 689999999999999999999999999999876554443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=341.63 Aligned_cols=194 Identities=29% Similarity=0.399 Sum_probs=164.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
+|+++|+++.|+++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999643234899999999999999999999999999999999999999999998763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|+.. +....++.+++... .......+++.++++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-HALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4688888753 33456777765421 11112345688899999997654 4577999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999876 56899999999999999999999999974
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=353.40 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=177.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFA 467 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~ 467 (629)
.+++++||++.|+. ...+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.+.|. ..+|
T Consensus 3 ~~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 35789999999962 235899999999999999999999999999999999999999999999872 2589
Q ss_pred eeccchhcccCCCCCHHHHHhh---cCCC--hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQ---SFPE--VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|.+. +...+|+.+++.. .+.. ....+++.++++.|||.... ++++..||+||||||.||+||+.+|+||
T Consensus 82 y~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 82 YVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred EEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864 5677898887532 1221 23456899999999998743 5688999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---C-ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF---E-GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~---~-~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
||||||+|||+.++..+++.|+++ + .|||++||.++++..+||+|++|++|+++ +.|+.+++...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~ 227 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEK 227 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHh
Confidence 999999999999999999999876 3 48999999999999999999999999997 56787776544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=356.82 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=173.3
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.++++||++.|+ ++.+|+||||+|++|+++||+||||||||||||+|+|+..|++|++.+.+...... ..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~------- 74 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PA------- 74 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HH-------
Confidence 488999999999 69999999999999999999999999999999999999999999998875332110 00
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+.++.+... +.+..+..+++.++..+.........+++.++++.+||.. ..++++++||+||||||.||+
T Consensus 75 ---~~~~~igy~~~~~~-~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 75 ---KVRRRIGYVPQEPS-LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred ---HHHhheEEEccCCC-CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHH
Confidence 11111111212211 2334456666666666655443455678999999999985 458889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---K-RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~-~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+.+|+||||||||+||||.++..+++.|+++ + .|||++||.++++..+||+|++|++|++++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998765 4 6999999999999999999999999999988743
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=341.47 Aligned_cols=202 Identities=28% Similarity=0.364 Sum_probs=176.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~ 466 (629)
+|.++++++.|+.- .+++||||+|+.||.++|.||||||||||||+|+|+..|+.|.|.+++. .++
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 58899999999643 4799999999999999999999999999999999999999999999875 369
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCC-------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFP-------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
|+++|+.. +...+|+.+++..+.. ....+.++.++|..+.|++... +++.+|||||||||+|||||+.+|
T Consensus 80 GfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 80 GFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred eEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-cCchhcChHHHHHHHHHHHhhcCC
Confidence 99999975 5678899998876541 2245677889999999987655 466899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++||||||+++||..-+..|...|++ ++.|+|+||||.+++.++||||++|++|+|.. .|++++..
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~ev~ 226 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDEVY 226 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHHHh
Confidence 99999999999999988877777654 47899999999999999999999999999964 67776653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=353.54 Aligned_cols=204 Identities=24% Similarity=0.365 Sum_probs=177.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEe
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFAR 468 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~ 468 (629)
..|+++||++.|++. . +++++||+|..||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+++
T Consensus 2 ~~i~l~~v~K~yg~~-~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 2 AELELKNVRKSFGSF-E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred cEEEEeeeEEEcCCc-e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 368999999999642 2 799999999999999999999999999999999999999999999874 46999
Q ss_pred eccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|... +.+.+|+.+++.... +....+++++++++.++|++...+ .+.+|||||||||+|||||+++|+++|
T Consensus 80 VFQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 80 VFQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred EeCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 999864 677899999986543 233457789999999999987765 569999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||+|+||...+..+...|++ ++.|+|+||||..++..++|||.+|++|+|.. .|++.+..+
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely~ 223 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELYE 223 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHhh
Confidence 9999999999988887777665 46799999999999999999999999999975 576666543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=357.22 Aligned_cols=212 Identities=24% Similarity=0.362 Sum_probs=167.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+||||+|++|+++||+||||||||||+++|+|++.|++|++.+.+.. +.....
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~--~~~~~~-------- 76 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP--VPSRAR-------- 76 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe--cccchH--------
Confidence 5999999999999899999999999999999999999999999999999999999999886432 111000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+... +.+..+..+++..+..+......+...++.++++.+++. +..++++.+|||||||||+||||
T Consensus 77 --~~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 77 --HARQRVGVVPQFDN-LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred --HHHhcEEEEeccCc-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHH
Confidence 00111111111111 112223334433333333334444556788999999996 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|++|||||||+|||+.++.++++.|+++ +.|||++||+++++..+||+|++|++|++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999998775 6799999999999999999999999999997754
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.08 Aligned_cols=201 Identities=28% Similarity=0.370 Sum_probs=168.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------ee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------LR 465 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 465 (629)
|+++|+++.|+. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999953 34899999999999999999999999999999999999999999998762 23
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|++|... +....++.+++... . ......+.+.++++.+|+.... .+++.+|||||||||+|||||+.+|
T Consensus 79 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 79 MGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-DLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred eEEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 778888753 33456887776432 1 1112245678899999997654 5678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 999999999999999999999999874 568999999999999999999999999997 567776653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=344.65 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=162.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~------ 72 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGED--ISGLSEAEL------ 72 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--ccccChhhH------
Confidence 478999999998899999999999999999999999999999999999999999998775432 111000000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh-hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRL-DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..+.+....+ +..+..++....... ..........++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 73 YRLRRRMGMLFQSGALF-DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHHhcceEEEccCcccC-CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHH
Confidence 00000111111111111 111222222221111 1123334456788899999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|++++.+ +.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g-~~~ 222 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG-TPE 222 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec-CHH
Confidence 99999999999999999999999999988764 679999999999999999999999999998654 443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=335.71 Aligned_cols=222 Identities=23% Similarity=0.301 Sum_probs=176.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.+++++|+++||+-.+++||||++++||++|||||||||||||+++|+|.++|+.|.|.+.+. ++.......
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~--~it~l~p~~------ 75 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR--DITGLPPHR------ 75 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCc--ccCCCCHHH------
Confidence 588999999999999999999999999999999999999999999999999999999987543 222211100
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh------hhh---c--cChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLD---D--ISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~---~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
-.+..+...+|....++..+..++++.... ... . ....+..+++.++|+.+||. +..+++..+||+
T Consensus 76 --iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~Lsy 152 (250)
T COG0411 76 --IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSY 152 (250)
T ss_pred --HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCCh
Confidence 011122223344444445455554433211 000 1 12345678899999999997 678999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||+|+.|||||+.+|++||||||.+||.+.....+.+.|+++ +.||++|.||++++..+||||+||+.|++++.|
T Consensus 153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred hHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccC
Confidence 9999999999999999999999999999999999999888765 479999999999999999999999999999887
Q ss_pred CcHHHHHH
Q psy10512 312 GNYEAFCK 319 (629)
Q Consensus 312 g~~~~~~~ 319 (629)
.|.+....
T Consensus 233 ~P~eV~~d 240 (250)
T COG0411 233 TPEEVRNN 240 (250)
T ss_pred CHHHHhcC
Confidence 77665443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=322.70 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=173.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEe
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFAR 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~ 468 (629)
||++.+++++|++- ..+++||||++..|+++||.|||||||||+||+|++++.|++|.|.+++- ..+|.
T Consensus 1 Ml~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 58999999999763 23799999999999999999999999999999999999999999998762 23444
Q ss_pred eccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++-. ..+...+|+.+++.. .......+.++.++.++|++.... ++++..||-||||||+|||||+++|.+||
T Consensus 80 l~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 80 LFGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-DRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred ecCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-HHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 4422 234456677776532 223334567788999999998765 45789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
|||||||||+.+...+.+.+.+. +.+||++||++.+++.+||+|+++++|+++ +.|+++...+..
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~ 224 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDART 224 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHH
Confidence 99999999999999999998776 468999999999999999999999999997 689988776544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.07 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~~ 165 (629)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.... ...+.++.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD--VTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE--cCcCchhhccEEEEc
Confidence 468999999998899999999999999999999999999999999999999999998875432 11100 00011111
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
+....+...+..+++ ................++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 79 -------------q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~ 143 (213)
T cd03259 79 -------------QDYALFPHLTVAENI-AFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALAR 143 (213)
T ss_pred -------------CchhhccCCcHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHH
Confidence 111111111222222 1111111122233455788899999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||+.+|+||||||||++||+.++.++++.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 144 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999999999999999999988764 67999999999999999999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=334.08 Aligned_cols=205 Identities=31% Similarity=0.439 Sum_probs=178.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.+++++++|+++|+. ..+++||||+|.+||+++||||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 367899999999963 45899999999999999999999999999999999999999999999874 3
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcCC-----------------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSFP-----------------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 527 (629)
.+++-+|... +...+|+++++..... .....+++.++|+.+||.+.. +.+.++||+|||+
T Consensus 80 Gi~RTFQ~~r--lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-~~~A~~LsyG~qR 156 (250)
T COG0411 80 GIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-DRPAGNLSYGQQR 156 (250)
T ss_pred cceeeccccc--ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-cchhhcCChhHhH
Confidence 4667778763 5678899988754210 123456788999999998754 5689999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 603 (629)
|+.|||||+.+|++||||||.+||.+.....+.+.|.++ +.||++|.||++++..+||||+||+.|+++ .+|+++
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHH
Confidence 999999999999999999999999999999999998776 368999999999999999999999999997 589998
Q ss_pred HHHH
Q psy10512 604 DYKE 607 (629)
Q Consensus 604 ~~~~ 607 (629)
+..+
T Consensus 236 eV~~ 239 (250)
T COG0411 236 EVRN 239 (250)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=355.96 Aligned_cols=206 Identities=24% Similarity=0.359 Sum_probs=175.9
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------ee
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LR 465 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ 465 (629)
..++|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 38 ~~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 38 STVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred CceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 4568999999999963 34899999999999999999999999999999999999999999998863 25
Q ss_pred EEeeccchhcccCCCCCHHHHHhh--cCC---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQ--SFP---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|... +...+++.+++.. ... .....+.+.++++.+|+.... ++++.+|||||||||+||+||+.+|+
T Consensus 116 ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 116 IGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-DARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-CCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 889998753 4456788876642 111 112344567889999997644 56789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||+|||+.++..+++.|.++ +.|||++|||++++..+||+|++|++|+++ +.|+++++..
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999876 568999999999999999999999999997 5788888754
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=306.60 Aligned_cols=234 Identities=25% Similarity=0.366 Sum_probs=199.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++|+++.||...+|-||+|+.++||.+.|+||+|+|||||+|.|+-++.|.+|+..|.....+....... ..
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~-----k~ 76 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD-----KA 76 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccH-----HH
Confidence 4899999999999999999999999999999999999999999999999999999999886544333322111 11
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
....|...++++++....+..+..+++.+...+...+..+++..++.++|+.+.+. ++.|+.+-.|||||+|||+||||
T Consensus 77 i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 77 IRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHH
Confidence 22446667778888877777777888877776777788888899999999999996 68999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~~ 323 (629)
|+++|++||+||||++|||+-...+.++++++ |.|-++|||..+++..++++++.|++|+|++. |..+.|.....+
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~-g~a~~ft~p~te 234 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCFTEPQTE 234 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee-cchhhccCccHH
Confidence 99999999999999999999998888887766 67999999999999999999999999999976 566777666555
Q ss_pred HHHH
Q psy10512 324 LLEN 327 (629)
Q Consensus 324 ~~~~ 327 (629)
.+.+
T Consensus 235 ~f~~ 238 (242)
T COG4161 235 AFKN 238 (242)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=359.45 Aligned_cols=216 Identities=22% Similarity=0.322 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|++..+|+|+||+|++||+++|+|||||||||||++|+|++.|++|+|.+.+.. +....
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~--i~~~~--------- 74 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED--VTHRS--------- 74 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE--CCCCC---------
Confidence 5999999999999899999999999999999999999999999999999999999998876432 11100
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..++++...++..+..+++ .+..........+..+++.++++.+|+. .+.++++.+|||||||||+||||
T Consensus 75 --~~~r~ig~vfQ~~~lfp~~tv~eNi-~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 75 --IQQRDICMVFQSYALFPHMSLGENV-GYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred --HHHCCEEEEeCCcccCCCCCHHHHH-HHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHH
Confidence 1111111222222223333333333 2222222334455667899999999997 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999887643 789999999999999999999999999999887665544
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=360.33 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=169.4
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++|++++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+... ....
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i--~~~~-------- 72 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV--NELE-------- 72 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC--CCCC--------
Confidence 48999999999 778899999999999999999999999999999999999999999998765321 1100
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+.+++++...++..+..+++ ............+...++.++++.+|+. ++.++++.+|||||||||+|||
T Consensus 73 ---~~~r~ig~v~Q~~~lfp~~tv~eNi-~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 73 ---PADRDIAMVFQNYALYPHMSVRENM-AYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred ---HHHCCEEEEeCCccccCCCCHHHHH-HhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHH
Confidence 0001111122222222222333333 2222222234445567889999999996 6789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..|.+.+.|
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999998877643 789999999999999999999999999999887655444
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=357.30 Aligned_cols=213 Identities=24% Similarity=0.376 Sum_probs=166.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++.+|+|+||+|++|+++||+||||||||||+++|+|++.|++|++.+++... .....
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~--~~~~~-------- 110 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV--PARAR-------- 110 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEEC--CcchH--------
Confidence 59999999999999999999999999999999999999999999999999999999998865421 11000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+... +.+..+..++...+..+..........++.++++.+|+. +..++++.+|||||||||+||+|
T Consensus 111 --~~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 111 --LARARIGVVPQFDN-LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred --HHhccEEEEeCCcc-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHH
Confidence 00001111111111 111223333333332222233334456678899999997 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|+.+|++|||||||+|||+.++.++++.|+++ +.|||++||+++++..+||+|++|++|++++.+.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999998775 68999999999999999999999999999987543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=351.29 Aligned_cols=204 Identities=24% Similarity=0.354 Sum_probs=172.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFA 467 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~ 467 (629)
.+|+++||++.|++ ..+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 57999999999963 34899999999999999999999999999999999999999999998763 3588
Q ss_pred eeccchhcccCCCCCHHHHHhh--c---CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQ--S---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|... +....|+.+++.. . .......+.+.++++.+++.... ++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 81 VVPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-DVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-cCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998753 3445788777642 1 11112234567889999997544 4578999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||+|++|++|+++ +.|+++++..
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999876 568999999999999999999999999997 5788777643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=358.91 Aligned_cols=217 Identities=23% Similarity=0.299 Sum_probs=172.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+|+||+|++|++++|+|||||||||||++|+|++.|++|+|.+.+... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~--~~~---------- 71 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI--TRL---------- 71 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC--CCC----------
Confidence 59999999999998999999999999999999999999999999999999999999998864321 110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+.+++++...++..+..+++ .........+..+...++.++++.+||. ++.++++.+|||||||||+||||
T Consensus 72 -~~~~r~ig~v~Q~~~lfp~~tv~eNi-~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 72 -PPQKRDYGIVFQSYALFPNLTVADNI-AYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred -CHHHCCEEEEeCCcccCCCCcHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHH
Confidence 00111111222222223333333333 2222222234455667899999999997 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
|+.+|++|||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999887653 7899999999999999999999999999998877655543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=337.84 Aligned_cols=211 Identities=21% Similarity=0.305 Sum_probs=157.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~--- 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQD--LTRLRGREI--- 75 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe--hhhcChhHH---
Confidence 3789999999964 479999999999999999999999999999999999999999998875422 110000000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
...+..+..+.+....++..+..++ .................++.++++.+|+. +..++++.+|||||||||+||
T Consensus 76 ---~~~~~~i~~~~q~~~~~~~~tv~e~-l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 76 ---PFLRRHIGMVFQDHRLLSDRTVYDN-VAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ---HHHHHhceEEecCccccccccHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 0001111111111111111122222 22211111222333456788999999996 567889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
|||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988765 68999999999999999999999999874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=333.82 Aligned_cols=193 Identities=25% Similarity=0.409 Sum_probs=163.2
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce--------eEEeeccc
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL--------RFARYHQH 472 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--------~~~~~~q~ 472 (629)
+++|+++.|+++. .+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|+
T Consensus 1 ~~~~l~~~~~~~~-~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcC-ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 3689999996423 48999999999999999999999999999999999999999999988742 58899887
Q ss_pred hhcccCCCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy10512 473 LHELLDLDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~L 551 (629)
....+ ...++.+++...... .....++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 80 ~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 80 VDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK-ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred hhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc-CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 53222 245787776432211 12235688999999998654 5677999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 552 DMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 552 D~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
|+.+++.+.+.|.++ +.+||+||||++++..+||++++|++|+++
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999876 568999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=389.18 Aligned_cols=185 Identities=22% Similarity=0.295 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CC
Q psy10512 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY---VKPHLLLLDEPTNHLDLDACVWLEEELKTY---KR 280 (629)
Q Consensus 207 ~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~ 280 (629)
...+++ ++|+.+|+.....++++.+|||||+|||+||+||+ .+|++|||||||++||+.++..|++.|.++ +.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 344555 58899999632268899999999999999999997 699999999999999999999999988654 68
Q ss_pred EEEEEecCHHHHHhhcceeEEEc------CCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChh
Q psy10512 281 ILVIISHSQDFLNGVCTNIIHLD------KRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSA 354 (629)
Q Consensus 281 tvIivsHd~~~l~~~~d~ii~l~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (629)
|||+|||+++++ .+||++++|. +|+++..+.+ +++..... +.. ..+..+
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp-eel~~~~s---------~t~-----~~l~~~--------- 918 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSP-EELIHLHT---------PTA-----KALRPY--------- 918 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCH-HHHHhccC---------chH-----HHHHHH---------
Confidence 999999999999 7999999996 7888876544 33211000 000 000000
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEEC
Q psy10512 355 KLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVG 434 (629)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG 434 (629)
+... ... .. + .|. . ..+ +...++++.+.. .+ .|+|+||+|++|++++|+|
T Consensus 919 ------------l~~~-----~~~----~~--~-~~~--~-~~~-l~~~~i~i~~~~-~~-~lk~isl~i~~gei~~itG 968 (1809)
T PRK00635 919 ------------LSSP-----QEL----PY--L-PDP--S-PKP-PVPADITIKNAY-QH-NLKHIDLSLPRNALTAVTG 968 (1809)
T ss_pred ------------hhcc-----ccc----cc--c-ccc--c-ccc-cccceEEEeccc-cc-cccceeEEecCCcEEEEEC
Confidence 0000 000 00 0 000 0 011 445667766642 23 6999999999999999999
Q ss_pred CCCCchHHHHHHH
Q psy10512 435 PNGAGKSTLLNLI 447 (629)
Q Consensus 435 ~NGsGKSTLlk~l 447 (629)
+||||||||+..+
T Consensus 969 ~nGsGKStL~~~~ 981 (1809)
T PRK00635 969 PSASGKHSLVFDI 981 (1809)
T ss_pred CCCCChhHHHHHH
Confidence 9999999977655
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=347.32 Aligned_cols=206 Identities=24% Similarity=0.316 Sum_probs=171.6
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------- 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------- 464 (629)
||+++||++.|+.+. ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999996322 148999999999999999999999999999999999999999999987631
Q ss_pred ----eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 465 ----RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ----~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
.++|++|++...+. ..++.+++... .+......++.++++.+||.....++++.+|||||||||+|||+|
T Consensus 81 ~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 37888887532232 34777766422 111123456788999999964344567899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999999998765 569999999999999999999999999997 578887764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=359.63 Aligned_cols=218 Identities=24% Similarity=0.356 Sum_probs=169.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|.|+++|++++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+.+... ....
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i--~~~~-------- 70 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV--SRLH-------- 70 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC--CCCC--------
Confidence 358999999999998999999999999999999999999999999999999999999998764321 1100
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh----hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL----DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+..+.+++++...++..+..+++ ...... ......+..+++.++++.+|+. ++.++++.+|||||||||
T Consensus 71 ---~~~r~i~~v~Q~~~l~p~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 71 ---ARDRKVGFVFQHYALFRHMTVFDNI-AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRV 145 (353)
T ss_pred ---HHHCCEEEEecCcccCCCCcHHHHH-HhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHH
Confidence 0000111112222222222333332 221111 1123344567889999999996 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++.++.+.+.|
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998887654 689999999999999999999999999999887665554
Q ss_pred H
Q psy10512 318 C 318 (629)
Q Consensus 318 ~ 318 (629)
.
T Consensus 226 ~ 226 (353)
T PRK10851 226 R 226 (353)
T ss_pred h
Confidence 3
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=352.89 Aligned_cols=213 Identities=23% Similarity=0.339 Sum_probs=164.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
++|+++||+++|++..+|+|+||+|++|+++||+|||||||||||++|+|++.|++|++.+.+.. +.... .
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~-~------ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP--VPSRA-R------ 73 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--CcccH-H------
Confidence 36999999999999899999999999999999999999999999999999999999999875432 11000 0
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+..+.+....+ +..+..++...+.............++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 74 ---~~~~~i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 74 ---LARVAIGVVPQFDNLD-PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred ---HHhhcEEEEeccccCC-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHH
Confidence 0001111111111111 1122222222222222223333445678899999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|++|||||||++||+.++.++++.|+++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGR 218 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999998765 6899999999999999999999999999987653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=352.05 Aligned_cols=231 Identities=22% Similarity=0.329 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCc---
Q psy10512 87 DVKIANFSITFHGC-----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK--- 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~-----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~--- 158 (629)
.|+++|++++|++. .+|+|+||+|.+||+++|+||||||||||+++|+|+++|+.|++.+.+..........
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 5999999999999999999999999999999999999999999988643221000000
Q ss_pred -----chhhh-----hhhchHHHHHHHHHHHHH-hccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh
Q psy10512 159 -----SALTC-----VMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227 (629)
Q Consensus 159 -----~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 227 (629)
..+.. .......+..+..+.++. ..+...+..+++ .+.............+++.++++.+||..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDI-IFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHH-HhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 00000 000000011111111211 011111222222 211111123444556788999999999656789
Q ss_pred cccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999988654 68999999999999999999999999
Q ss_pred CeEEEEcCcHHHHH
Q psy10512 305 RKLKYYGGNYEAFC 318 (629)
Q Consensus 305 G~i~~~~g~~~~~~ 318 (629)
|++++.+.+++.+.
T Consensus 241 G~i~~~g~~~~~~~ 254 (305)
T PRK13651 241 GKIIKDGDTYDILS 254 (305)
T ss_pred CEEEEECCHHHHhc
Confidence 99998877665543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=352.17 Aligned_cols=209 Identities=16% Similarity=0.248 Sum_probs=175.2
Q ss_pred CCeEEEEEEEEEEcCC-----------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--
Q psy10512 397 PPVIMVQNVSFRYSDD-----------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~-----------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-- 463 (629)
+++|+++||++.|+.. ...+++|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 5789999999999531 235899999999999999999999999999999999999999999998763
Q ss_pred ------------eeEEeeccchhcccCCCCCHHHHHhhc-------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChh
Q psy10512 464 ------------LRFARYHQHLHELLDLDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524 (629)
Q Consensus 464 ------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 524 (629)
..++|++|+....++...++.+++... .......+.+.++++.+|+.....++++.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 248899998643455667887775321 1112234567889999999644445678999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecC
Q psy10512 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600 (629)
Q Consensus 525 qkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 600 (629)
|+|||+|||||+.+|+||||||||++||+.++..++++|+++ +.|+|+||||++++..+||+|++|++|+|++ .|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-LG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999999988765 5689999999999999999999999999985 57
Q ss_pred CHHHHH
Q psy10512 601 NILDYK 606 (629)
Q Consensus 601 ~~~~~~ 606 (629)
+.+++.
T Consensus 245 ~~~~i~ 250 (331)
T PRK15079 245 TYDEVY 250 (331)
T ss_pred CHHHHH
Confidence 765543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=334.10 Aligned_cols=209 Identities=24% Similarity=0.351 Sum_probs=160.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+............+.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~-- 78 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF-- 78 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe--
Confidence 478999999998899999999999999999999999999999999999999999998875432110000000111111
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
+....+...+..+++ ...........+....++.++++.+|+. +..++++.+||||||||++|||||
T Consensus 79 -----------q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 79 -----------QNYALYPHMTVYDNI-AFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred -----------cChhhccCCCHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHH
Confidence 111111111222222 2111111223344456788899999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999988754 689999999999999999999999999998753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=349.40 Aligned_cols=206 Identities=22% Similarity=0.300 Sum_probs=170.8
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
+|+++||++.|+... ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999996432 13899999999999999999999999999999999999999999988531
Q ss_pred -----------------------eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccc
Q psy10512 464 -----------------------LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQV 515 (629)
Q Consensus 464 -----------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~ 515 (629)
..++|++|.+...+. ..++.+++... .+.....+++.++++.+||.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 136899987532332 35777776422 1111234568899999999643445
Q ss_pred cCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeC
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICEN 592 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~ 592 (629)
+++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 678999999999999999999999999999999999999999999998765 56999999999999999999999999
Q ss_pred CEEEEecCCHHHHH
Q psy10512 593 GKVTKWEGNILDYK 606 (629)
Q Consensus 593 G~i~~~~g~~~~~~ 606 (629)
|+++ ..|+++++.
T Consensus 241 G~i~-~~g~~~~~~ 253 (305)
T PRK13651 241 GKII-KDGDTYDIL 253 (305)
T ss_pred CEEE-EECCHHHHh
Confidence 9997 467776653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=350.97 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=174.8
Q ss_pred CCeEEEEEEEEEEcCC--------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----
Q psy10512 397 PPVIMVQNVSFRYSDD--------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~--------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----- 463 (629)
+++|+++||++.|+.. ...+|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 4689999999999521 235899999999999999999999999999999999999999999998762
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..++|++|+....++..+++.+.+.. ........+++.++|+.+||.....++++.+|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 24889999875456666676655431 112222345788999999996434456789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
|+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||+.++..+||+|++|++|+|++ .|+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999999998764 5699999999999999999999999999985 576655
Q ss_pred HH
Q psy10512 605 YK 606 (629)
Q Consensus 605 ~~ 606 (629)
+.
T Consensus 242 ~~ 243 (327)
T PRK11308 242 IF 243 (327)
T ss_pred Hh
Confidence 43
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=334.77 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=167.4
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~~ 469 (629)
|+++|+++.|++ . .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-F-EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-E-EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 578999999963 3 4899999999999999999999999999999999999999999998763 247888
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|... +....++.+++... .......+.+.++++.+|+... .++++.+|||||||||+||+||+.+|++|||
T Consensus 79 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 79 FQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred cCCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88753 34456777765321 1111234567899999999754 4567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||||++||+.+++.+.+.|.++ +.+||+||||++++..+||++++|++|+++. .|+.++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 218 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPEE 218 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChHH
Confidence 9999999999999999998764 5689999999999999999999999999974 566543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=333.30 Aligned_cols=193 Identities=26% Similarity=0.395 Sum_probs=164.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++|+++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 478999999953 34899999999999999999999999999999999999999999998763 2478888
Q ss_pred cchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|... +....++.+++.... ......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 79 QDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-NRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred Cchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8754 334567777664211 1112345678899999997544 4577999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||+|||+.++..+.+.|.++ +.+||++|||++++..+||++++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999875 5689999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=354.33 Aligned_cols=204 Identities=24% Similarity=0.357 Sum_probs=172.0
Q ss_pred eEEEEEEEEEEcC--CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
||+++||+++|+. ....+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999962 1235899999999999999999999999999999999999999999998762
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +....++.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-DRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 24888888753 44456887776422 11112345678899999997644 46779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+.+++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999999875 468999999999999999999999999997 467766653
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=355.63 Aligned_cols=204 Identities=23% Similarity=0.287 Sum_probs=174.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++|+++.|+.+ ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 68999999999322 34899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++.... +.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 82 FQNYA--LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLL-DRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred eCCcc--ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 556788888875432 1112345688999999998654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||++||+.+++.+.+.|+++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~~ 224 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVYE 224 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHHh
Confidence 9999999999999999888754 568999999999999999999999999997 4688776543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=339.35 Aligned_cols=212 Identities=25% Similarity=0.331 Sum_probs=161.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+............+.++.
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 35899999999999899999999999999999999999999999999999999999998876432110000000011111
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc----ChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI----SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
+....++..+..+++ ......... ......+++.++++.+|+. +..++++.+|||||||||
T Consensus 81 -------------q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl 145 (239)
T cd03296 81 -------------QHYALFRHMTVFDNV-AFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRV 145 (239)
T ss_pred -------------cCCcccCCCCHHHHH-hhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHH
Confidence 110111111222222 111111111 2223345678899999996 567889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 9999999999999999999999999999999988764 6799999999999999999999999999987653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=353.64 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=176.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEE
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFA 467 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~ 467 (629)
.++|+++||++.|+. ..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 358999999999963 34899999999999999999999999999999999999999999999873 4689
Q ss_pred eeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|+.. +...+|+.+++.... +.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 82 MVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-DRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred EEeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863 456678888875432 1223356788999999998654 5577999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||+|++|++|+|+. .|+++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~ 225 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELY 225 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999888754 5799999999999999999999999999974 68877654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=335.60 Aligned_cols=210 Identities=23% Similarity=0.375 Sum_probs=160.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.. +.... ..
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~--~~~~~-~~------- 70 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD--VVREP-RE------- 70 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe--cCcCh-HH-------
Confidence 578999999999899999999999999999999999999999999999999999998875422 11100 00
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.+..+..+.+....+ +..+..+..................++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 71 --~~~~i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 71 --VRRRIGIVFQDLSVD-DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred --HhhcEEEecCCcccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHH
Confidence 000011111111111 1112222222211111222333456788999999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999988653 679999999999999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=343.24 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=171.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
++|+++|+++.|+.+. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCCC-eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4799999999995333 4899999999999999999999999999999999999999999998873 247
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|.+...+ ...++.+++... .......+++.++++.+|+.+. .++++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 82 GLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF-RDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred EEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-hcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 89998753222 345777776432 1111234567889999999754 4567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||+|++|++|+++ ..|+++.+
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 225 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL 225 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence 9999999999999999999999776 569999999999999999999999999997 46776554
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.90 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=174.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 47999999999963 34899999999999999999999999999999999999999999998863 247
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-------C--ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-------P--EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
+|++|... +.+.+++.+++.... . .....+.+.++++.+|+.+. .++++.+|||||||||+|||||++
T Consensus 80 g~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHHc
Confidence 88888753 445678887764321 1 12345678899999999754 456889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.++..++++|+++ +.|||++|||++++.++|||+++|++|+++ ..|+++++.
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999999999998876 468999999999999999999999999997 478887753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=356.87 Aligned_cols=218 Identities=25% Similarity=0.340 Sum_probs=171.4
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|+.|+|.+.+... ...
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i--~~~--------- 81 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI--THV--------- 81 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC--CCC---------
Confidence 359999999999998999999999999999999999999999999999999999999998765321 110
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
...+..+.++++....++..+..+++ .+..........+...++.++++.+||. ++.++++.+|||||||||+|||
T Consensus 82 --~~~~r~ig~vfQ~~~lfp~ltv~eNi-~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 82 --PAENRHVNTVFQSYALFPHMTVFENV-AFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred --CHHHCCEEEEecCcccCCCCCHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHH
Confidence 00111111222222223333333333 2221222233444566789999999997 6789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
||+.+|+||||||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999887653 7899999999999999999999999999998876655544
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.39 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=171.2
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
.|+++||++.|+... ..+|+||||+|.+||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996421 24899999999999999999999999999999999999999999988762
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCC-cccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|.+...+ +..++.+++... .......+.+.++++.+||.. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 24789998753222 345777776421 111123456788999999962 2345678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++ ..|+.+++.
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVF 233 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999999999765 468999999999999999999999999997 478777754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=357.72 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=167.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|++.|++|+|.+.+... .....
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i--~~~~~-------- 72 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM--NDVPP-------- 72 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC--CCCCH--------
Confidence 48999999999998999999999999999999999999999999999999999999988754321 11000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+.++.+....++..+..+++ .+..........+...++.++++.+||. +..++++.+|||||||||+||||
T Consensus 73 ---~~~~i~~v~Q~~~l~~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 73 ---AERGVGMVFQSYALYPHLSVAENM-SFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred ---hHCCEEEEeCCcccCCCCCHHHHH-HhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHH
Confidence 000011111111112222222332 2221222233344556889999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998887654 689999999999999999999999999999876554433
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=345.42 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=170.4
Q ss_pred EEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 400 IMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 400 l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
|+++||+++|+... ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 24899999999999999999999999999999999999999999998773
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|++...+. ..++.+++... .......+.+.++++.+||.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 147899987532232 35777766422 1111223567889999999744445678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++ +.|++.++
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~ 233 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREI 233 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999999998765 568999999999999999999999999997 57877665
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.32 Aligned_cols=202 Identities=28% Similarity=0.396 Sum_probs=169.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
+|+++||++.|+.+. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~-~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGK-QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCc-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 478999999996223 4899999999999999999999999999999999999999999998763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC-------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF-------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 531 (629)
.++|++|... +....++.+++.... ......+++.++++.+|+.... ++++.+|||||||||+|
T Consensus 80 ~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 80 RIGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-YQRADQLSGGQQQRVAI 156 (243)
T ss_pred heEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHH
Confidence 3788888753 334567777664211 0112345678899999997543 45779999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999999999999999999998775 468999999999999999999999999997 56777665
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=355.71 Aligned_cols=216 Identities=23% Similarity=0.346 Sum_probs=169.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--CceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP--DHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~--g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|+++||+++|++..+|+|+||+|++|++++|+|||||||||||++|+|++.|++ |++.+.+.. +....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~--~~~~~------- 75 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD--LTHAP------- 75 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEE--CCCCC-------
Confidence 4899999999999899999999999999999999999999999999999999999 998876432 11100
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
..+..+..++++...++..+ ..++..+..............++.++++.+||. ++.++++.+|||||||||+||
T Consensus 76 ----~~~r~ig~vfQ~~~l~p~~t-v~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 76 ----PHKRGLALLFQNYALFPHLK-VEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred ----HHHCCEEEEECCcccCCCCc-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHH
Confidence 00111111222222222223 333333222222334445567899999999997 578999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999877643 679999999999999999999999999999887665544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=341.31 Aligned_cols=205 Identities=25% Similarity=0.351 Sum_probs=171.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|+++||++.|+. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 468999999999953 34899999999999999999999999999999999999999999998762
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|... +....++.+++... . ........+.++++.+|+.... ++++.+|||||||||+|||||+
T Consensus 83 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 83 RKRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-KLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred hhcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 13778888753 33456777766421 1 1111234567889999997544 5578999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 233 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQA 233 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999999998875 468999999999999999999999999997 4687776643
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=344.40 Aligned_cols=206 Identities=26% Similarity=0.336 Sum_probs=170.7
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------- 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------- 464 (629)
+|+++||++.|++.. ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 588999999996321 248999999999999999999999999999999999999999999987731
Q ss_pred ----eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 465 ----RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ----~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
.++|++|.+...+. ..++.+++... .......+.+.++++.+|+......+++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 36888887532222 35777776421 111123456788999999963334568899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999999876 468999999999999999999999999997 467776654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=336.07 Aligned_cols=201 Identities=28% Similarity=0.342 Sum_probs=169.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 4899999999964 34899999999999999999999999999999999999999999998763 247888
Q ss_pred ccchhcccCCCCCHHHHHhhcC---C-----C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF---P-----E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~---~-----~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|.+. +....++.+++.... . . ....+.+.++++.+|+.... ++++.+|||||+|||+|||||+.+|+
T Consensus 80 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 80 FQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred ecCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88753 334567777664221 0 1 11234577899999997543 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHH
Confidence 99999999999999999999999875 468999999999999999999999999997 46776655
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=347.83 Aligned_cols=208 Identities=20% Similarity=0.284 Sum_probs=171.5
Q ss_pred CCCeEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------
Q psy10512 396 PPPVIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 463 (629)
..++|+++|++|.|+... ..+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 457899999999996421 24899999999999999999999999999999999999999999998751
Q ss_pred ------------------eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCc
Q psy10512 464 ------------------LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQ 520 (629)
Q Consensus 464 ------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 520 (629)
..++|++|.....+. ..++.+++... .......+++.++++.+||......+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 136788887532232 34777766422 111123356788999999963334557799
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 521 LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~- 255 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL- 255 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-
Confidence 9999999999999999999999999999999999999999998765 569999999999999999999999999997
Q ss_pred ecCCHHHH
Q psy10512 598 WEGNILDY 605 (629)
Q Consensus 598 ~~g~~~~~ 605 (629)
..|+.+++
T Consensus 256 ~~g~~~~~ 263 (320)
T PRK13631 256 KTGTPYEI 263 (320)
T ss_pred EeCCHHHH
Confidence 46887765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=338.09 Aligned_cols=195 Identities=30% Similarity=0.338 Sum_probs=167.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------eeEEeec
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYH 470 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~~~~~~ 470 (629)
.++|+++||++.|+. . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 10 ~~~l~i~~l~~~~~~-~-~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-R-TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECC-c-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 467999999999963 3 4899999999999999999999999999999999999999999998763 2578988
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
|... +....++.+++...... .....+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 88 q~~~--l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 88 QDAR--LLPWKKVIDNVGLGLKG-QWRDAALQALAAVGLADRA-NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred cCcc--CCCCCcHHHHHHhcccc-hHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 8753 33446888876543322 2345678899999997644 457799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 551 LDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 551 LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999998764 5689999999999999999999999999974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=335.91 Aligned_cols=202 Identities=27% Similarity=0.394 Sum_probs=168.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------ee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------LR 465 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 465 (629)
|+++||++.|+++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999632 34899999999999999999999999999999999999999999998762 13
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC-------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF-------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
++|++|... +....++.+++.... ......+.+.++++.+|+... ..+++.+|||||||||+||
T Consensus 80 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 80 IGMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-AYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred cEEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-hCCCcccCCHHHHHHHHHH
Confidence 678887653 334567777664211 111234567889999999754 3457799999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhh
Confidence 9999999999999999999999999999998775 468999999999999999999999999997 467776653
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=346.97 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||++.|++ +++|+||||+|.+||++||+||||||||||+++|+|+++|+.|+|.+.+... ........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~--~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI--TDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC--CCcCccHH
Confidence 4899999999974 4699999999999999999999999999999999999999999998765321 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc-hhhhcccCCCChHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK-EMQQKKTKDFSGGWRM 239 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqrq 239 (629)
..+..+..+.++.. .....+..+++ ........+...+...++.++++.+||.. +..++++.+|||||||
T Consensus 80 -------~~~~~ig~v~q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 80 -------DIRKKVGLVFQYPEYQLFEETIEKDI-AFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKR 151 (287)
T ss_pred -------HHhhceEEEecCchhccccccHHHHH-HhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHH
Confidence 00001111111100 01111222222 22111122344455667899999999962 4678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+.++.+|.+.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999988654 6799999999999999999999999999998765544
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 232 ~ 232 (287)
T PRK13637 232 V 232 (287)
T ss_pred H
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.00 Aligned_cols=205 Identities=26% Similarity=0.430 Sum_probs=173.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|.++||+++|+. ..+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++...++|++|....
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~--- 75 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA--- 75 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC---
Confidence 5889999999963 34899999999999999999999999999999999999999999999887778888875321
Q ss_pred CCCCHHHHHhh--------------------------------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHH
Q psy10512 479 LDISPLDYMLQ--------------------------------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQK 526 (629)
Q Consensus 479 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 526 (629)
...+...++.. .........++..+|..+||.....++++.+||||||
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 11222222110 0001112356788999999974344678899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+||++|+.+|+||||||||||||+.++.+|.+.|.++++|||+||||++++..+||+|++|++|++..|.|+|..|.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999987
Q ss_pred HH
Q psy10512 607 ET 608 (629)
Q Consensus 607 ~~ 608 (629)
+.
T Consensus 236 ~~ 237 (638)
T PRK10636 236 VQ 237 (638)
T ss_pred HH
Confidence 53
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=331.70 Aligned_cols=192 Identities=31% Similarity=0.445 Sum_probs=162.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
+|+++|+++.|+.+. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~-~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV-AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCc-eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 478999999995233 4899999999999999999999999999999999999999999988763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|... +....++.+++... .......+.+.++++.+|+.... ++++.+|||||+|||+|||||+.+|
T Consensus 80 ~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 80 RIGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-DAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred heEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhCCC
Confidence 4678888753 33456777765432 11112345678999999997543 4577999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999875 5689999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.88 Aligned_cols=207 Identities=22% Similarity=0.360 Sum_probs=171.9
Q ss_pred eEEEEEEEEEEcCC-------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------
Q psy10512 399 VIMVQNVSFRYSDD-------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------- 463 (629)
+|+++||++.|+.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999531 235899999999999999999999999999999999999999999998762
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|.....+....++.+++.. .+......+.+.++++.+|+.....++++.+|||||+|||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 14788888753234445677776531 111112345678899999996333456789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence 99999999999999999999999999999998765 568999999999999999999999999997 468776664
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=335.00 Aligned_cols=209 Identities=25% Similarity=0.405 Sum_probs=161.1
Q ss_pred EEEEeEEEEeCCe----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~~----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|++++|++. ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~-~~---- 74 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VVKE-PA---- 74 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEE--cccC-HH----
Confidence 7899999999876 79999999999999999999999999999999999999999999875432 1100 00
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
..+..+....+... ..+..+..++.................++.++++.+|+. +..++++.+|||||||||+|
T Consensus 75 -----~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 75 -----EARRRLGFVSDSTG-LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred -----HHHhhEEEecCCcc-cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHH
Confidence 00001111111111 111112222222222222223334556788999999996 56789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 99999999999999999999999999999988765 67999999999999999999999999999754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=332.66 Aligned_cols=197 Identities=27% Similarity=0.405 Sum_probs=165.4
Q ss_pred CCeEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------
Q psy10512 397 PPVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 463 (629)
+++|+++||++.|+.+. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 46899999999996422 34899999999999999999999999999999999999999999998762
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
..++|++|... +....++.+++... .......+++.++++.+|+.+.. .+++.+|||||||||+||||
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-NHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHH
Confidence 24788888753 34456787765421 11122345678999999997544 45679999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|+.+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+ |++++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99999999999999999999999999999765 46899999999999875 6999999999974
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=351.62 Aligned_cols=204 Identities=24% Similarity=0.358 Sum_probs=175.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEe
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFAR 468 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~ 468 (629)
++|+++||+++|+. ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 47999999999963 34899999999999999999999999999999999999999999999873 35889
Q ss_pred eccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|+.. +...+|+.+++.... +......++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++||
T Consensus 81 v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 81 VFQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-RKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EeCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999853 455678888875332 1123356788999999998654 45779999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||+|++|++|+++ ..|+++++.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999888764 579999999999999999999999999997 4677766543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=340.58 Aligned_cols=209 Identities=20% Similarity=0.303 Sum_probs=170.7
Q ss_pred CeEEEEEEEEEEcCC-------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------
Q psy10512 398 PVIMVQNVSFRYSDD-------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 463 (629)
++|+++||+++|+.. ...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 579999999999521 134899999999999999999999999999999999999999999998762
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|+....+....++.+++.. ........+.+.++++.+|+.......++.+|||||+|||+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 24788888753223344455554421 11111234567889999999533345577999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++..
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 999999999999999999999999999998875 568999999999999999999999999997 5787776643
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=345.00 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=175.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEe
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFAR 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~ 468 (629)
+++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 4899999999963 35899999999999999999999999999999999999999999998773 24889
Q ss_pred eccchhcccCCCCCHHHHHhh---c--CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQ---S--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|... +....++.+++.. . .+.....+++.++++.||+.... ++++..|||||||||+||+||+.+|++||
T Consensus 80 ~~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 80 LPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred ecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 988753 4556788887642 1 12222345688899999998654 56789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||+|||+.+++.+++.|+++ +.|||++||+++++..+||+|++|++|+++ +.|+.+++..
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 99999999999999999999887 468999999999999999999999999997 6799888754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=343.16 Aligned_cols=206 Identities=21% Similarity=0.302 Sum_probs=170.5
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
.|+++||++.|+.+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999996321 24899999999999999999999999999999999999999999998762
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
..++|++|.+...+. ..++.+++... .......+.+.++++.+||......+++.+|||||+|||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 147889987532222 24777766431 111123456788999999963334567899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++.++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999999999865 469999999999999999999999999997 468776643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=344.17 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=162.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+............
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~------ 74 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA------ 74 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH------
Confidence 38899999999988899999999999999999999999999999999999999999988754321100000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+..+.+.........+..++.................++.++++.+|+. +..++++.+||||||||++||||
T Consensus 75 ---~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 75 ---LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred ---HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHH
Confidence 00001111111000001111121111111111222333445678899999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++.+.+.+
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999988765 6799999999999999999999999999998765433
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=331.94 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------eeEEeeccchh
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQHLH 474 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~~~~~~q~~~ 474 (629)
+++||++.|+. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|+..
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 36899999963 34899999999999999999999999999999999999999999999873 35889998764
Q ss_pred cccCCCCCHHHHHhhcCC---------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 475 ELLDLDISPLDYMLQSFP---------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
.......|+.+++..... .....+.+.++++.+|+... .++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~llllD 157 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-ADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 222234678877643211 11234567889999999754 45678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 546 EPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
|||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|.+
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 999999999999999999876 36899999999999999999999998744
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=345.66 Aligned_cols=219 Identities=21% Similarity=0.269 Sum_probs=162.3
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+..|++|+|.+.+............
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~- 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL- 80 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH-
Confidence 4899999999974 4699999999999999999999999999999999999999999998765422100000000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+..+.++.. ...+.+..+++ .+..............++.++++.+||.....++++.+||||||||
T Consensus 81 ------~~~~~~ig~v~q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (290)
T PRK13634 81 ------KPLRKKVGIVFQFPEHQLFEETVEKDI-CFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR 153 (290)
T ss_pred ------HHHHhhEEEEeeCchhhhhhhhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHH
Confidence 000000111111100 00111122222 1111111223344556788999999996556789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||||++|++|++++.+.+
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999988654 68999999999999999999999999999976543
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.83 Aligned_cols=215 Identities=22% Similarity=0.371 Sum_probs=167.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.++++|++++|++..+|+|+||+|++|+++||+|||||||||||++|+|++.|++|+|.+.+.. +.... .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~--~~~~~-~------- 71 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNP-K------- 71 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--cccCh-H-------
Confidence 5899999999999999999999999999999999999999999999999999999999876432 11100 0
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+....+... +.+..+..++...+..+..........++.++++.||+. +..++++..|||||||||+||||
T Consensus 72 --~~~~~ig~~~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 72 --EVQRNIGYLPEHNP-LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred --HHHhceEEecCCCC-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHH
Confidence 00011111111111 112222333333333332333344456788999999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|+.+|++|||||||+|||+.++.++++.|+++ +.|||++||+++++..+||||++|++|++++. |+.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~-g~~~~ 218 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVAD-KKLDE 218 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999999877 57999999999999999999999999999965 45443
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=344.06 Aligned_cols=221 Identities=22% Similarity=0.339 Sum_probs=163.8
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||+++|++ +++|+||||+|++|+++||+||||||||||+++|+|++.|+.|+|.+.+............
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~- 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI- 80 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH-
Confidence 5899999999964 3699999999999999999999999999999999999999999988754321100000000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+..+.++.. ..... +..++..+..............++.++++.+|+..+..++++.+||||||||
T Consensus 81 ------~~~~~~ig~v~q~~~~~l~~~-tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (286)
T PRK13646 81 ------RPVRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRK 153 (286)
T ss_pred ------HHHHhheEEEecChHhccchh-hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 000111111111110 01111 2222222111111233445566788999999996456788999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999988754 6899999999999999999999999999997765433
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=331.00 Aligned_cols=201 Identities=25% Similarity=0.366 Sum_probs=167.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~~ 469 (629)
|+++||++.|+++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 57899999996421348999999999999999999999999999999999999999999987642 37888
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|... +....++.+++... .+.....+.+.++++.+|+.... ..++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88743 33456777765321 11112245678899999997543 457799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||||++||+.+++.+.+.|.++. .|||++|||++++..+||++++|++|+++ ..|+.++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~ 218 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQE 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHH
Confidence 99999999999999999998763 58999999999999999999999999997 4566554
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.00 Aligned_cols=195 Identities=27% Similarity=0.344 Sum_probs=164.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
+|+++|+++.|+.+. .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGR-QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCC-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 478999999994233 4899999999999999999999999999999999999999999998763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|+.. +....++.+++... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p 156 (222)
T PRK10908 80 QIGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-KNFPIQLSGGEQQRVGIARAVVNKP 156 (222)
T ss_pred heEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCCchhCCHHHHHHHHHHHHHHcCC
Confidence 4678888753 33456777766432 11112234577899999997643 4577999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
++|||||||++||+.+++.+.+.|.++ +.+||+||||++++..+||+|++|++|+++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999998876 4689999999999999999999999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=335.14 Aligned_cols=200 Identities=31% Similarity=0.456 Sum_probs=168.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~ 467 (629)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 34899999999999999999999999999999999999999999988763 2378
Q ss_pred eeccchhcccCCCCCHHHHHhhcC---C------------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF---P------------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
|++|... +....|+.+++.... . .....+.+.++++.+|+... .++++.+|||||||||+||
T Consensus 79 ~v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 79 RTFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-ADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-hhCChhhCCHHHHHHHHHH
Confidence 8888753 344567777654211 0 11224467889999999754 3567899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHh
Confidence 9999999999999999999999999999999775 468999999999999999999999999997 46776554
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=354.60 Aligned_cols=218 Identities=24% Similarity=0.371 Sum_probs=164.5
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~----~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~--i~~~~~~~~- 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD--LTALSEKEL- 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE--CCcCCHHHH-
Confidence 388999999997 4679999999999999999999999999999999999999999999875432 111000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+..+..+.++...++. .+..++.................++.++++.+|+. +..++++.+|||||||||+
T Consensus 78 -----~~~~~~ig~v~q~~~l~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 78 -----RKARRQIGMIFQHFNLLSS-RTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred -----HHHhcCEEEEeCCCccCCC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHH
Confidence 0000011111111111111 22222222222222233334556788999999996 5678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++++.+...
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999988765 679999999999999999999999999999776543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=329.97 Aligned_cols=195 Identities=30% Similarity=0.402 Sum_probs=164.2
Q ss_pred EEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------eeEEeecc
Q psy10512 400 IMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQ 471 (629)
Q Consensus 400 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~~~~~~q 471 (629)
|+++|+++.|+... ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 47899999996311 35899999999999999999999999999999999999999999998773 35788888
Q ss_pred chhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 472 HLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
... +....++.+++... .......+.+.++++.+|+.... .+++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-NAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 753 33446777765321 11112345678899999997543 45779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe--CCEEEE
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE--NGKVTK 597 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~--~G~i~~ 597 (629)
||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999999765 4689999999999999999999999 799974
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=331.02 Aligned_cols=192 Identities=31% Similarity=0.453 Sum_probs=160.7
Q ss_pred EEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------
Q psy10512 400 IMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------- 463 (629)
Q Consensus 400 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 463 (629)
|+++||++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 34899999999999999999999999999999999999999999998752
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc--CC---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS--FP---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|... +....++.+++... +. .....+.+.++++.+|+.... ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-hcChhhcCHHHHHHHHHHHHHcc
Confidence 24788888753 33456777765432 11 112345678899999997644 55779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999875 468999999999997 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=344.72 Aligned_cols=219 Identities=22% Similarity=0.300 Sum_probs=162.8
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.............
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 46999999999999999999999999999999999999999999988653211000000000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
..+..+..+.++.. ..... +..++.................++.++++.+|+..++.++++.+||||||||
T Consensus 82 -------~~~~~ig~v~q~~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (287)
T PRK13641 82 -------KLRKKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRR 153 (287)
T ss_pred -------HHHhceEEEEeChhhhhccc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHH
Confidence 00000000111100 01111 2222222111111233344556788999999996457789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999988765 57999999999999999999999999999876543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=328.29 Aligned_cols=193 Identities=23% Similarity=0.336 Sum_probs=163.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++|+++.|+. . .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~l~~~~~~-~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN-V-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC-e-eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 478999999964 3 4899999999999999999999999999999999999999999998763 2478888
Q ss_pred cchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|+.. +....++.+++... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 79 QNYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-DRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred cChh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 33456777765421 11112345677889999997543 5678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999765 5689999999999999999999999999974
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=357.75 Aligned_cols=214 Identities=23% Similarity=0.355 Sum_probs=164.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+.+.. +......
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~--i~~~~~~------- 73 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDD--VEALSAR------- 73 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE--cCcCCHH-------
Confidence 5999999999999999999999999999999999999999999999999999999999876532 1110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh--hhhccC--hhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD--RLDDIS--ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..+..+..+.+.....+.. +..++..+.. ....+. .....+++.++++.+|+. ++.++++.+|||||||||+
T Consensus 74 --~~~~~ig~v~q~~~l~~~~-tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 74 --AASRRVASVPQDTSLSFEF-DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVL 149 (402)
T ss_pred --HHhcceEEEccCCCCCCCC-CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHH
Confidence 0000111111111111122 2222222111 001111 223456789999999996 6789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+++|+||||||||++||+.++..++++|+++ +.|||++|||++++..+|||+++|++|+++..+.+
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999888765 67999999999999999999999999999977544
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=336.04 Aligned_cols=205 Identities=25% Similarity=0.373 Sum_probs=171.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
..+|+++||++.|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 346899999999963 34899999999999999999999999999999999999999999988763
Q ss_pred -----------eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHH
Q psy10512 464 -----------LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQK 526 (629)
Q Consensus 464 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 526 (629)
..++|++|+.. +....++.+++... .......+++.++++.+|+......+++.+||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~ 158 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158 (257)
T ss_pred cccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 13678887753 33446777776321 111123456788999999976543457899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 603 (629)
|||+|||||+.+|++|||||||++||+.+++.+.+.|.++ +.+||+||||++++..+||+|++|++|+++ +.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (257)
T PRK10619 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPE 237 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHH
Confidence 9999999999999999999999999999999999998775 568999999999999999999999999997 568876
Q ss_pred HHH
Q psy10512 604 DYK 606 (629)
Q Consensus 604 ~~~ 606 (629)
++.
T Consensus 238 ~~~ 240 (257)
T PRK10619 238 QLF 240 (257)
T ss_pred Hhh
Confidence 654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=337.02 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=169.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------ 464 (629)
.++|+++|+++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 4 ~~~l~~~~l~~~~~~-~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGP-R-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCC-c-eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 357999999999963 3 48999999999999999999999999999999999999999999887642
Q ss_pred --------eEEeeccchhcccCCCCCHHHHHhh---cCC--C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHH
Q psy10512 465 --------RFARYHQHLHELLDLDISPLDYMLQ---SFP--E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 465 --------~~~~~~q~~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 530 (629)
.++|++|+....+....++.+++.. .+. . ......+.++++.+++......+++.+|||||+|||+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 3778888764334444555444321 111 1 1224567789999999643345678999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999999998654 568999999999999999999999999997 467776653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=351.47 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=175.8
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeE
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRF 466 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~ 466 (629)
..++|+++|+++.|+. ..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 3568999999999963 34899999999999999999999999999999999999999999998874 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|+.. +...+++.+++.... +.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++
T Consensus 89 g~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 89 NTVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFA-QRKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred EEEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 89999863 556778888875432 1112245678899999998654 456799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||+|++|++|+|+. .|+++++.
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~ 233 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIY 233 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999988764 5789999999999999999999999999974 67776654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=330.01 Aligned_cols=196 Identities=21% Similarity=0.335 Sum_probs=165.7
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeE
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~ 466 (629)
+|+++|+++.|+... ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 478999999996421 14899999999999999999999999999999999999999999998763 247
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|... +....++.+++... .......+.+.++++.+|+.+.. .+++.+|||||||||+|||||+.+|++
T Consensus 81 ~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-DRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 88888752 34456777765321 11112345678899999997543 567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999876 4699999999999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=340.39 Aligned_cols=207 Identities=25% Similarity=0.389 Sum_probs=173.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+++|+++|+++.|+.+ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 3 DYILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred CceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 4589999999999533 34899999999999999999999999999999999999999999998763
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|.+...+ ...++.+++... .+.....+.+..+++.+||.+. .++++.+|||||+|||+|||||+.+
T Consensus 82 ~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 82 ESVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred hhEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-hhCCcccCCHHHHHHHHHHHHHHcC
Confidence 13788888753222 345777776421 1222234567889999999754 4567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999988765 569999999999999999999999999997 5788776543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=341.48 Aligned_cols=217 Identities=22% Similarity=0.262 Sum_probs=162.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.........
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--i~~~~~~~~~---- 80 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN--IPAMSRSRLY---- 80 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--ccccChhhHH----
Confidence 5999999999998899999999999999999999999999999999999999999998875432 1110000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.++...++..+..+++.................++.++|+.+|+. +..++++.+|||||||||+||||
T Consensus 81 --~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 81 --TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred --HHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHH
Confidence 000001111111111111122232221111111122233445678899999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999988764 5799999999999999999999999999987643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=372.57 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=178.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
+++|+++||++.|+++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.
T Consensus 4 ~~~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~-- 80 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ-- 80 (556)
T ss_pred cEEEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--
Confidence 5689999999999622 3489999999999999999999999999999999999999999999887778999999853
Q ss_pred cCCCCCHHHHHhhcC-----------------CCh------------------------hhHHHHHHHHHHcCCCCcccc
Q psy10512 477 LDLDISPLDYMLQSF-----------------PEV------------------------KDREEMRKIIGRYGLTGRQQV 515 (629)
Q Consensus 477 ~~~~~~~~~~~~~~~-----------------~~~------------------------~~~~~~~~~l~~~gl~~~~~~ 515 (629)
+....|+.+++.... ... ....++..+++.+|+.. .+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~ 158 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WD 158 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--cc
Confidence 334567776653211 000 01345678899999953 35
Q ss_pred cCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+++.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 68899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEecCCHHHHHHHH
Q psy10512 596 TKWEGNILDYKETL 609 (629)
Q Consensus 596 ~~~~g~~~~~~~~~ 609 (629)
+.+.|++++|.+..
T Consensus 239 ~~~~g~~~~~~~~~ 252 (556)
T PRK11819 239 IPWEGNYSSWLEQK 252 (556)
T ss_pred EEecCCHHHHHHHH
Confidence 87899999886543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=343.95 Aligned_cols=221 Identities=24% Similarity=0.310 Sum_probs=163.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|++++|+. ..+|+|+||+|.+|++++|+||||||||||+++|+|++.|++|++.+.+............
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~- 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI- 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH-
Confidence 3899999999973 2599999999999999999999999999999999999999999998764321100000000
Q ss_pred hhhhhchHHHHHHHHHHHHH-hccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+..++++. ......+..+++ .+..........+...++.++++.+|+..++.++++.+||||||||
T Consensus 80 ------~~~~~~ig~v~q~~~~~l~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 80 ------KPVRKKVGVVFQFPESQLFEETVLKDV-AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ------HHHHhhEEEEecCcchhcccchHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 00001111111110 001111222222 1111111233344566789999999996456789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+|||||+.+|+||||||||++||+.++.+|.+.|.++ +.|||+||||++++..+||+|++|++|++++.+.+.+
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999988654 6899999999999999999999999999997755433
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=331.13 Aligned_cols=199 Identities=26% Similarity=0.376 Sum_probs=162.9
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||++.|+... ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 478999999996421 14899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc---CC-Chh--hHHH-HHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS---FP-EVK--DREE-MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~-~~~--~~~~-~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
..++|++|.....+....++.+++... .. ... .... +.++++.+++.......++.+|||||+|||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 147788887532344456777765321 11 111 1122 247889999953334567899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999765 4689999999999999999999999999863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=330.66 Aligned_cols=205 Identities=26% Similarity=0.347 Sum_probs=154.3
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 89 KIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 89 ~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.|++.+.+.. +......
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~------- 71 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD--LTKLSLK------- 71 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE--cccCCHH-------
Confidence 36899999987 789999999999999999999999999999999999999999998875432 1110000
Q ss_pred chHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+..+.+... ..+..+..+++ ................++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 72 --~~~~~i~~~~q~~~~~~~~~t~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 72 --ELRRKVGLVFQNPDDQFFGPTVEEEV-AFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred --HHHhhceEEecChhhhcCCCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHH
Confidence 00111111111110 01111222222 2111111122233455788899999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999988765 5799999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=341.78 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=164.7
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++|+++.|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~----- 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE--VNAENEKW----- 76 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE--CCCCCHHH-----
Confidence 599999999996 5679999999999999999999999999999999999999999999876532 11110000
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+..+..+.+... .....+..+++ ........+.......++.++++.+|+. +..++++.+|||||+|||+||
T Consensus 77 ----~~~~i~~v~q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 77 ----VRSKVGLVFQDPDDQVFSSTVWDDV-AFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred ----HHhhEEEEecChhhhhccCcHHHHH-HhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 0000111111100 01111222222 2111111233334456788999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|++|||||||++||+.++.++++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+ +.+
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~-~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH-HHh
Confidence 9999999999999999999999999999988765 68999999999999999999999999999977654 444
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=345.69 Aligned_cols=207 Identities=22% Similarity=0.296 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC----CCccEEEECCce--------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT----PSVGMVRKNSHL-------- 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~-------- 464 (629)
+|+++||++.|+... ..+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999996422 248999999999999999999999999999999999998 489999988731
Q ss_pred -------eEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCC--cccccCcCcCChhHHHHH
Q psy10512 465 -------RFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTG--RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 465 -------~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~~LSgGqkqrv 529 (629)
.++|++|.....++..+++.+.+.. ........+.+.++|+.+||.. ...++++.+|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 4889999865445555666543321 1111233567889999999974 223457799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|+||||||||++||+.++..++++|.++ +.|+|+||||++++..+||+|++|++|+|++ .|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999998765 4689999999999999999999999999985 5766554
Q ss_pred H
Q psy10512 606 K 606 (629)
Q Consensus 606 ~ 606 (629)
.
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 3
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=329.29 Aligned_cols=205 Identities=27% Similarity=0.355 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|++.+.+.. +... ...+.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~-~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP--VTGP-GPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--Cccc-cCcEEE
Confidence 468999999987 789999999999999999999999999999999999999999998775432 1100 001111
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
+.+ ....+ +..+..++.................++.++++.+|+. +..++++.+||||||||++|
T Consensus 78 v~q-------------~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~l 142 (220)
T cd03293 78 VFQ-------------QDALL-PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVAL 142 (220)
T ss_pred Eec-------------ccccc-cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 110 00011 1112222222111111222233456788999999996 56788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEc--CCeEEEE
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLD--KRKLKYY 310 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~--~G~i~~~ 310 (629)
||||+.+|++|||||||++||+.++.++++.|+++ +.|||+||||++++..+||++++|+ +|+++..
T Consensus 143 a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 99999999999999999999999999999988654 6799999999999999999999999 7999764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=351.20 Aligned_cols=202 Identities=24% Similarity=0.299 Sum_probs=172.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
.|+++|+++.|++ ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 5899999999963 34899999999999999999999999999999999999999999998763 248899
Q ss_pred ccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|... +...+|+.+++.... ......+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 81 FQSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred eCCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98753 445678888765321 1112345688999999997644 457799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.+++.+.+.|+++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999888765 568999999999999999999999999997 467776654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=329.26 Aligned_cols=208 Identities=27% Similarity=0.453 Sum_probs=159.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|+++.|+++++|+|+||+|++| +++|+||||||||||+++|+|+++|++|++.+.+. ++.... .
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~--~~~~~~-~-------- 68 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ--DVLKQP-Q-------- 68 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC--ccccch-H--------
Confidence 57899999999889999999999999 99999999999999999999999999999877542 111100 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+..+..+.++...+ +..+..++......+......+....+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 69 -~~~~~i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 69 -KLRRRIGYLPQEFGVY-PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred -HHHhheEEecCCCccc-ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHH
Confidence 0011111111111111 1122222222222222222333456788999999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++++.
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999876 58999999999999999999999999999754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=329.27 Aligned_cols=206 Identities=21% Similarity=0.377 Sum_probs=159.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|+++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +...
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~----------- 67 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP--LDIA----------- 67 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCc--hhHH-----------
Confidence 478999999998899999999999999999999999999999999999999999998875321 1000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.+..+..+.+....+ +..+..++................+.+.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 68 --~~~~i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 68 --ARNRIGYLPEERGLY-PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred --HHccEEEeccCCcCC-cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHH
Confidence 000000111111111 1112222222222222222334456788999999996 567888999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++++
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999999999999999999999988765 57999999999999999999999999999754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=347.83 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=173.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++|+++.|+. ..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999964 34899999999999999999999999999999999999999999998763 358899
Q ss_pred ccchhcccCCCCCHHHHHhhcCC---------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP---------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|+.. +...+++.+++..... .....+++.++++.++|.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 80 ~Q~~~--l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 80 FQHYA--LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-DRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred ecCcc--cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99853 4556788887753321 112345788999999997654 46779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||++||+.+++.+.+.|.++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999888765 568999999999999999999999999997 468877654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=328.80 Aligned_cols=194 Identities=26% Similarity=0.408 Sum_probs=162.1
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 478999999996321 34899999999999999999999999999999999999999999998752
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|... +....++.+++... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+
T Consensus 81 ~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-NHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 24788888742 33456777765421 11112345678899999997544 5677999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999764 5689999999999965 7999999999974
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=331.37 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=168.9
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++|+++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 478999999996421 14899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|... +....|+.+++... .........+.++++.+|+.... ++++.+|||||+|||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-DAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-hcChhhCCHHHHHHHHHHHHHhc
Confidence 23678887753 33456777765421 11112345678899999997543 45779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999999999999765 468999999999999999999999999997 46766554
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=333.77 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~------- 72 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK--VNDPKVDE------- 72 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--CCcCChhH-------
Confidence 789999999998899999999999999999999999999999999999999999998876432 11100000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
...+..+....+....++..+..+++.................++.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHH
Confidence 0000011111111111111122222211111111223334456788999999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++. |+.+++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 223 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED-GDPQVL 223 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee-CCHHHH
Confidence 9999999999999999999999999988654 68999999999999999999999999999876 444433
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=334.78 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=164.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------eEEeeccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------RFARYHQH 472 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~~~~~~q~ 472 (629)
+|+++|+++.|++ . .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|.
T Consensus 1 ml~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGG-K-PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCC-e-eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 4789999999963 3 48999999999999999999999999999999999999999999987632 37888887
Q ss_pred hhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 473 LHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. +....++.+++... .......+++.++++.+|+.... .+++.+|||||||||+|||||+.+|++||||||
T Consensus 79 ~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 79 EG--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-KRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred Cc--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 53 33446777765421 11112345678999999997543 457799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe--CCEEEE
Q psy10512 548 TNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE--NGKVTK 597 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~--~G~i~~ 597 (629)
|+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 9999999999999999875 4689999999999999999999998 599865
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=328.33 Aligned_cols=192 Identities=30% Similarity=0.429 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEee
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFARY 469 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~~ 469 (629)
+++|+++.|+.....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642134899999999999999999999999999999999999999999998763 246788
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|.... .....++.+++... .......+.+.++++.+|+... ..+++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-RDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887421 12346777765421 1111234567889999999754 3467899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 545 DEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
||||+|||+.+++.+.+.|.++ +.+||+||||++++..+||+|++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999876 4589999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=335.81 Aligned_cols=212 Identities=21% Similarity=0.336 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~------ 72 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED--ITGLPPHEI------ 72 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE--CCCCCHHHH------
Confidence 468999999998889999999999999999999999999999999999999999998875432 111100000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-cc---------ChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-DI---------SADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---------~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
.+..+..+.+....+ +..+..++........ .. .......++.++++.+|+. ...++++.+|||||
T Consensus 73 --~~~~i~~v~q~~~l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~ 148 (236)
T cd03219 73 --ARLGIGRTFQIPRLF-PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQ 148 (236)
T ss_pred --HhcCEEEEecccccc-cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHH
Confidence 000000111111111 1112222222111110 00 1223455788999999996 56788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||+|||||+.+|++|||||||++||+.++.++++.|+++ +.|||+||||++++..+||++++|++|+++..+
T Consensus 149 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 149 QRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 99999999999999999999999999999999999988764 579999999999999999999999999998654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=351.79 Aligned_cols=217 Identities=25% Similarity=0.360 Sum_probs=170.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|++..+|+|+||+|++|++++|+|||||||||||++|+|++.|+.|+|.+.+.. +...
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~--i~~~---------- 86 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD--LSHV---------- 86 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE--CCCC----------
Confidence 5999999999998889999999999999999999999999999999999999999999876532 1110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+.+++++...++..+..+++ .+..........+..+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 87 -~~~~r~ig~vfQ~~~lfp~ltv~eNi-~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 87 -PPYQRPINMMFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred -CHHHCCEEEEeCCCccCCCCCHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHH
Confidence 01111111222222223332333333 3222222234445667889999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
|+.+|+||||||||++||+..+.++.+.|+ +.+.|+|+||||++++..+||+|++|++|+++..+.+.+.|.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999999999988876554 457899999999999999999999999999998877665543
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=325.81 Aligned_cols=193 Identities=24% Similarity=0.435 Sum_probs=164.5
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------eeEEeeccc
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------LRFARYHQH 472 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~~~~~~q~ 472 (629)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 478999999953 34899999999999999999999999999999999999999999999873 357888887
Q ss_pred hhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 473 LHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. +....++.+++... .+.....+.+.++++.+|+.... .+++.+|||||||||+||+||+.+|++||||||
T Consensus 79 ~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 79 RG--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-NKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred Cc--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 53 33456777765321 11122345678899999997543 457799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 548 TNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|+|||+.++..+.+.|+++ +.|||++|||.+++..+||++++|++|+++.
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999876 4689999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=333.00 Aligned_cols=212 Identities=22% Similarity=0.263 Sum_probs=159.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|+++.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|++.+.+... ........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~--~~~~~~~~------ 72 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI--TKLPMHKR------ 72 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec--ccCCHhHH------
Confidence 4789999999988999999999999999999999999999999999999999999988754321 11000000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.+..+....+....+ +..+..++.................++.++++.+|+. +..++.+.+|||||||||+|||||
T Consensus 73 --~~~~i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 73 --ARLGIGYLPQEASIF-RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred --HhccEEEecCCcccc-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHH
Confidence 000000011111111 1112222222111111122233445778899999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++..+
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 215 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEG 215 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEe
Confidence 9999999999999999999999999988654 679999999999999999999999999998654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=332.02 Aligned_cols=210 Identities=25% Similarity=0.405 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.|++.+.+.. +.........
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~--~~~~~~~~~~- 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD--ISKLSEKELA- 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe--hhhcchhHHH-
Confidence 468999999986 789999999999999999999999999999999999999999998875432 1100000000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
...+..+..+.+....+ +..+..++................+++.++++.+|+. ...++++.+|||||||||+|
T Consensus 78 ----~~~~~~i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 78 ----AFRRRHIGFVFQSFNLL-PDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred ----HHHhhcEEEEeeccccC-CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHH
Confidence 00000011111111111 1112222222211111222223456788999999996 45788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++. +||++++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999988764 579999999999997 9999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=333.59 Aligned_cols=202 Identities=24% Similarity=0.429 Sum_probs=169.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
+|+++||++.|++ . .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG-Q-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC-e-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 6899999999963 3 4899999999999999999999999999999999999999999987652
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|... +....++.+++... . ......+.+.++++.+|+.... ++++.+|||||+|||+|||
T Consensus 81 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 81 RQLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred HHhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-hCChhhCChHHHHHHHHHH
Confidence 14678887643 33446777765321 1 1112235678899999997543 4678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999988765 568999999999999999999999999997 467776654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=344.19 Aligned_cols=211 Identities=19% Similarity=0.318 Sum_probs=174.3
Q ss_pred CCCCeEEEEEEEEEEcC--CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCc------
Q psy10512 395 IPPPVIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSH------ 463 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------ 463 (629)
...++|+++||++.|+. +...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 34578999999999953 2235899999999999999999999999999999999999996 999998873
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhh---c---CCChhhHHHHHHHHHHcCCCCc--ccccCcCcCChhHH
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQ---S---FPEVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQK 526 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqk 526 (629)
..++|++|+....++..+++.+++.. . .......+++.++|+.+||... ...+++.+|||||+
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 15889999875456666776654421 1 1111234567889999999742 12356799999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
|||+|||||+.+|+|||+||||++||+.++..++++|.++ +.|+|+||||++++..+||+|++|++|+|++ .|+.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence 9999999999999999999999999999999999988765 5689999999999999999999999999985 6776
Q ss_pred HHHH
Q psy10512 603 LDYK 606 (629)
Q Consensus 603 ~~~~ 606 (629)
+++.
T Consensus 247 ~~i~ 250 (330)
T PRK09473 247 RDVF 250 (330)
T ss_pred HHHH
Confidence 6654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=331.96 Aligned_cols=203 Identities=28% Similarity=0.363 Sum_probs=169.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++||++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999642 34899999999999999999999999999999999999999999998763 24678
Q ss_pred eccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCC-cccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
++|... +....|+.+++... .......+.+.++++.+|+.. ....+++.+|||||+|||+|||||+.+|++|
T Consensus 80 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 80 VIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 888753 34456777775421 111123456788999999974 2345677999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||||++||+.++..+.+.|.++ +.+||+||||.+++..+||+|++|++|+++. .|+.+++.
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 224 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEIL 224 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999998875 4689999999999999999999999999974 57766553
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=330.26 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=160.5
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.... .
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~-~------ 71 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYS--IRTDR-K------ 71 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe--cccch-H------
Confidence 578999999987 789999999999999999999999999999999999999999999875432 11000 0
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+..+.++.. ..+..+..++.................++.++++.+|+. +..++++.+|||||+|||+|||
T Consensus 72 ---~~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 72 ---AARQSLGYCPQFDA-LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAI 146 (220)
T ss_pred ---HHhhhEEEecCcCC-ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHH
Confidence 00001111111111 111112222222222112222333456788999999996 5678889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+.+|++|||||||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999765 479999999999999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=337.52 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=171.1
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
++|+++||++.|+... .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4689999999995333 3899999999999999999999999999999999999999999998763 147
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|.....+ ...++.+++... .......+.+.++++.+|+.... .+++.+|||||||||+|||||+.+|++
T Consensus 81 ~~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 81 GLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-DRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred EEEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 88888753222 245777766421 11112234678899999997544 457799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ +.|+++++.
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 226 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF 226 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence 9999999999999999999998764 568999999999999999999999999997 568887764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=329.22 Aligned_cols=210 Identities=27% Similarity=0.396 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+++||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.......
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~------- 71 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLK--LTDDKKNI------- 71 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--CCccchhH-------
Confidence 468999999998899999999999999999999999999999999999999999998875432 11000000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
...+..+..+.+....++..+..+++.................++.++++.+|+. ...++++.+|||||+|||+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHH
Confidence 0000011111111111111122222211111111222334456788899999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
+.+|++|||||||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999998765 57999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=347.84 Aligned_cols=203 Identities=24% Similarity=0.311 Sum_probs=174.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc--cEEEECCc---------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV--GMVRKNSH---------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~--G~i~~~~~---------~~~~ 467 (629)
.|+++||++.|+. ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+++. ..++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 3789999999963 348999999999999999999999999999999999999999 99998763 3588
Q ss_pred eeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|+.. +...+|+.+++.... +.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 83 LLFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-AHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EEECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864 456778888775321 2122345688999999998654 5577999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc-----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF-----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~-----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999988654 468999999999999999999999999997 4688776644
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=346.04 Aligned_cols=208 Identities=19% Similarity=0.278 Sum_probs=171.3
Q ss_pred CeEEEEEEEEEEcC--CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC----CCccEEEECCc--------
Q psy10512 398 PVIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT----PSVGMVRKNSH-------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~-------- 463 (629)
++|+++||++.|+. +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999952 22358999999999999999999999999999999999997 58999998763
Q ss_pred -------eeEEeeccchhcccCCCCCHHHHHhhc-----CC-----C-hhhHHHHHHHHHHcCCCCc--ccccCcCcCCh
Q psy10512 464 -------LRFARYHQHLHELLDLDISPLDYMLQS-----FP-----E-VKDREEMRKIIGRYGLTGR--QQVCPIRQLSD 523 (629)
Q Consensus 464 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~-----~-~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSg 523 (629)
..++|++|+....++...++.+.+... .. . ....+.+.++|+.+||... ..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 148899998654455556665554321 10 1 1234568899999999742 23456799999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEec
Q psy10512 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599 (629)
Q Consensus 524 Gqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 599 (629)
||+|||+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++..+||+|++|++|+|++ .
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-T 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999999998764 5689999999999999999999999999974 6
Q ss_pred CCHHHHH
Q psy10512 600 GNILDYK 606 (629)
Q Consensus 600 g~~~~~~ 606 (629)
|+.+++.
T Consensus 241 g~~~~i~ 247 (330)
T PRK15093 241 APSKELV 247 (330)
T ss_pred CCHHHHH
Confidence 7766553
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=333.47 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=168.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------- 464 (629)
++|+++||++.|++ . .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~~l~~~~l~~~~~~-~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG-G-KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC-c-eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 57999999999963 3 48999999999999999999999999999999999999999999986521
Q ss_pred -------eEEeeccchhcccCCCCCHHHHHhh-----cCC-ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH
Q psy10512 465 -------RFARYHQHLHELLDLDISPLDYMLQ-----SFP-EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 465 -------~~~~~~q~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 531 (629)
.++|++|.....+....++.+++.. ... .....+.+.++++.+|+.....++++..|||||||||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 2677777653223334455444321 111 112345678899999996434456789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999999988764 568999999999999999999999999997 467766654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=329.62 Aligned_cols=200 Identities=25% Similarity=0.407 Sum_probs=152.8
Q ss_pred EEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 89 KIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 89 ~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
+++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +... .
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~---~------- 68 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP--IKAK---E------- 68 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--hhhH---H-------
Confidence 36899999987 789999999999999999999999999999999999999999998775432 1100 0
Q ss_pred hHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+..+.+... ..... +..++....... .. ....++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 69 --~~~~i~~~~q~~~~~~~~~-tv~e~l~~~~~~--~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lara 140 (205)
T cd03226 69 --RRKSIGYVMQDVDYQLFTD-SVREELLLGLKE--LD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAA 140 (205)
T ss_pred --hhcceEEEecChhhhhhhc-cHHHHHhhhhhh--cC--ccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHH
Confidence 0000000001000 00011 111111111110 11 1235688999999997 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999998765 689999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=332.24 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=162.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--i~~~~~~~------ 74 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVD--IKTIDVID------ 74 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--hhhcChHH------
Confidence 5899999999998899999999999999999999999999999999999999999999876432 11100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+....+....+ +. +..++........ .....++.++++.+|+..+..++++.+|||||||||+||||
T Consensus 75 ---~~~~i~~~~q~~~~~-~~-tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 75 ---LRRKIGMVFQQPHLF-EG-TVKDNIEYGPMLK----GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred ---hhhcEEEEecCchhc-hh-hHHHHHhcchhhc----CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 000000000110001 11 1111111111100 11235678899999996456788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++..+.+.+.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999988653 789999999999999999999999999999887665543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=330.57 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=169.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------------R 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------~ 465 (629)
+|+++|+++.|++ ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. .
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 4789999999963 348999999999999999999999999999999999999999999987621 3
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|++|... +....++.+++.... ......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 79 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 79 AGMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred eEEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-hcChhhcCHHHHHHHHHHHHHhcCC
Confidence 678888653 334567777654211 1112345678899999997544 5577999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|++.++.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 999999999999999999999999765 568999999999999999999999999997 568877664
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=330.42 Aligned_cols=203 Identities=24% Similarity=0.430 Sum_probs=171.3
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
++|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 36899999999963 34899999999999999999999999999999999999999999998763 13
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCC-------------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFP-------------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
++|++|... +....++.+++..... .......+.++++.+|+.... +.++.+|||||+|||+||
T Consensus 79 i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 79 IGRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-DRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred eeEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHH
Confidence 778887642 3445677776543210 012345678899999997544 567899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+.+++.
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 9999999999999999999999999999999876 368999999999999999999999999997 578877764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=334.30 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=172.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCce---------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSHL--------- 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~--------- 464 (629)
+++|+++||++.|+. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|..
T Consensus 2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 358999999999963 34899999999999999999999999999999999999986 4999887631
Q ss_pred -------eEEeeccchhcccCCCCCHHHHHhhcC-------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChh
Q psy10512 465 -------RFARYHQHLHELLDLDISPLDYMLQSF-------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524 (629)
Q Consensus 465 -------~~~~~~q~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 524 (629)
.++|++|... +....++.+++.... .......++.++++.+|+... .++++.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G 156 (262)
T PRK09984 80 DIRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-AHQRVSTLSGG 156 (262)
T ss_pred hHHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-HhCCccccCHH
Confidence 3678888753 334567777764221 011234567889999999753 45678999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecC
Q psy10512 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600 (629)
Q Consensus 525 qkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 600 (629)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeC
Confidence 999999999999999999999999999999999999999875 468999999999999999999999999996 578
Q ss_pred CHHHHHH
Q psy10512 601 NILDYKE 607 (629)
Q Consensus 601 ~~~~~~~ 607 (629)
+++++.+
T Consensus 236 ~~~~~~~ 242 (262)
T PRK09984 236 SSQQFDN 242 (262)
T ss_pred CHHHhcc
Confidence 8887743
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=335.51 Aligned_cols=225 Identities=25% Similarity=0.387 Sum_probs=163.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +......... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~~~-~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDIT--IDTARSLSQQ-KGL 79 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE--ccccccccch-hhH
Confidence 4899999999998899999999999999999999999999999999999999999998775432 1110000000 000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
....+..+..+.+....++..+..+++.................++.++++.+|+. ...++++.+|||||||||+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHH
Confidence 00000011111111111111222233221111111222333456788899999997 45788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++.+ +.++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 230 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG-PAKA 230 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC-CHHH
Confidence 99999999999999999999999999988654 679999999999999999999999999998764 4443
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=338.01 Aligned_cols=206 Identities=25% Similarity=0.314 Sum_probs=169.1
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
.|+++||++.|+... ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 488999999996421 24899999999999999999999999999999999999999999998763
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
..++|++|.....+. ..++.+++... .......+.+.++++.+|+.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 136888887521222 34777765421 111122345678899999974344567899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999998875 468999999999999999999999999997 467776653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=329.84 Aligned_cols=197 Identities=25% Similarity=0.321 Sum_probs=164.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC-----CCCccEEEECCce----------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL-----TPSVGMVRKNSHL---------- 464 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~~---------- 464 (629)
|+++||++.|+. . .+|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++..
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 478999999964 3 4899999999999999999999999999999999999 9999999987631
Q ss_pred ---eEEeeccchhcccCCCCCHHHHHhhcC-----CCh-hhHHHHHHHHHHcCCCCcccccC-cCcCChhHHHHHHHHHH
Q psy10512 465 ---RFARYHQHLHELLDLDISPLDYMLQSF-----PEV-KDREEMRKIIGRYGLTGRQQVCP-IRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 465 ---~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~-~~~LSgGqkqrv~lAra 534 (629)
.++|++|... +. ..|+.+++.... ... ...+++.++++.+|+.......+ +.+|||||||||+||||
T Consensus 79 ~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 79 LRRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 3678888753 22 568877764211 111 12456788999999976544433 58999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
|+.+|++|||||||++||+.++..+.+.|.++. .|||++|||++++..+||++++|++|+++. .|+.
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 224 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPT 224 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCc
Confidence 999999999999999999999999999998773 589999999999999999999999999974 4554
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=325.25 Aligned_cols=192 Identities=22% Similarity=0.363 Sum_probs=163.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~~ 469 (629)
|+++|+++.|+. . .+|+++||+|.+| +++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~-~-~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-K-RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-E-EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEe
Confidence 478999999953 3 4899999999999 99999999999999999999999999999998873 347888
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +....++.+++... .......+.+.++++.+|+.... +.++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 78 PQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred cCCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-hCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88753 33456777765321 11112345678899999997544 457799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 545 DEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999876 4789999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=327.60 Aligned_cols=197 Identities=26% Similarity=0.328 Sum_probs=164.3
Q ss_pred CCeEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------
Q psy10512 397 PPVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 463 (629)
+++|+++||++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 35799999999996422 24899999999999999999999999999999999999999999998762
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
..++|++|... +....++.+++... .......+++.++++.+|+.... .+++.+|||||+|||+||||
T Consensus 84 ~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRL-DHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHHHHHHH
Confidence 24788888753 33456777765321 11112345688999999997543 45779999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|+.+|++|||||||+|||+.+++.+.+.|.++ +.|||++|||.+++. .||++++|++|+++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999999999999999999999999999664 568999999999985 499999999999863
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=333.70 Aligned_cols=207 Identities=22% Similarity=0.265 Sum_probs=159.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.... ..+.++.+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~-~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP--VEGPG-AERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCCCC-CcEEEEeC
Confidence 3889999999998889999999999999999999999999999999999999999998875432 11100 00111110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
....++..+..+++ ................++.++++.+|+. ...++++.+|||||||||+||||
T Consensus 78 -------------~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 78 -------------NEGLLPWRNVQDNV-AFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred -------------CCccCCCCcHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHH
Confidence 00011111222222 1111111222333456788999999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEc--CCeEEEEc
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLD--KRKLKYYG 311 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~--~G~i~~~~ 311 (629)
|+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|+ +|+++...
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 99999999999999999999999999988764 6799999999999999999999998 59988653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=336.69 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=157.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.. +..
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~--~~~---------- 78 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP--LAE---------- 78 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE--HHH----------
Confidence 35999999999998899999999999999999999999999999999999999999998764321 100
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.+..+..+.+....+ +..+..++.... +. .....++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 79 ----~~~~i~~v~q~~~l~-~~~tv~enl~~~--~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~lar 146 (257)
T PRK11247 79 ----AREDTRLMFQDARLL-PWKKVIDNVGLG--LK----GQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALAR 146 (257)
T ss_pred ----hhCceEEEecCccCC-CCCcHHHHHHhc--cc----chHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHH
Confidence 000000001111111 111222221111 00 11245678899999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++..+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999888653 689999999999999999999999999998754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=367.24 Aligned_cols=205 Identities=27% Similarity=0.481 Sum_probs=175.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|+++|+++.|++ . .+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|... +.
T Consensus 1 ml~i~~ls~~~~~-~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~ 76 (530)
T PRK15064 1 MLSTANITMQFGA-K-PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AF 76 (530)
T ss_pred CEEEEEEEEEeCC-c-EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cC
Confidence 4889999999963 3 489999999999999999999999999999999999999999999987777899998753 33
Q ss_pred CCCCHHHHHhhcC----------------C---------------------ChhhHHHHHHHHHHcCCCCcccccCcCcC
Q psy10512 479 LDISPLDYMLQSF----------------P---------------------EVKDREEMRKIIGRYGLTGRQQVCPIRQL 521 (629)
Q Consensus 479 ~~~~~~~~~~~~~----------------~---------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 521 (629)
...++.+++.... + ......++.++|+.+|+......+++.+|
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 4456655543110 0 00123467789999999754444578999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCC
Q psy10512 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601 (629)
Q Consensus 522 SgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 601 (629)
||||||||+||++|+.+|+||||||||+|||+.++..|.+.|.+.+.|||+||||++++..+||+|++|++|+++.+.|+
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~ 236 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGN 236 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999768899
Q ss_pred HHHHHH
Q psy10512 602 ILDYKE 607 (629)
Q Consensus 602 ~~~~~~ 607 (629)
+++|.+
T Consensus 237 ~~~~~~ 242 (530)
T PRK15064 237 YDEYMT 242 (530)
T ss_pred HHHHHH
Confidence 998864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=328.88 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=167.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~ 467 (629)
|+++||++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999963 34899999999999999999999999999999999999999999998763 2377
Q ss_pred eeccchhcccCCCCCHHHHHhhcC--C---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF--P---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|... +....++.+++.... . .......+.++++.+|+.... .+++.+|||||||||+|||||+.+|++|
T Consensus 79 ~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 79 YLPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred EecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 8888753 334567777654211 1 112234677899999997544 4677999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||||+|||+.+++.+.+.|+++ +.|||++|||++++..+||++++|++|+++ +.|+.+++.
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 221 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA 221 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence 999999999999999999988765 468999999999999999999999999997 467766553
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=331.22 Aligned_cols=215 Identities=22% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCe----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~~----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|+.|++.+.+.. +........
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~~-- 77 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTD--LTLLSGKEL-- 77 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--cccCCHHHH--
Confidence 7899999999876 89999999999999999999999999999999999999999999875432 111100000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
...+..+..+.+....++..+..+++ .................+.++++.+|+. +..++++.+|||||+|||+|
T Consensus 78 ----~~~~~~i~~~~q~~~~~~~~t~~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 78 ----RKARRRIGMIFQHFNLLSSRTVFENV-ALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred ----HHHHhheEEEccCcccCCCCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHH
Confidence 00001111111111111111222222 2111111222233455788999999996 56788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++++.+.
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999988754 6799999999999999999999999999987643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=325.77 Aligned_cols=192 Identities=27% Similarity=0.406 Sum_probs=161.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------ee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------LR 465 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 465 (629)
|+++|+++.|+.+ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999533 34899999999999999999999999999999999999999999988763 13
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|... +....++.+++... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|+
T Consensus 80 i~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 80 IGVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-RALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred eEEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 678888753 33456777765421 11112345678899999997543 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+||++++|++|++
T Consensus 157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999876 46899999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=313.99 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=166.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc-----cEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV-----GMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~-----G~i~~~~~-------- 463 (629)
.+.++++||++.|+. ..+|++||+.|+++.++|||||+|||||||||++..+..... |+|.++|.
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 457899999999974 348999999999999999999999999999999999988765 89988763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
.++|.++|.+. .+.+++++++..+. ....-++.++..|....|=+ +..+++...||||||||+|
T Consensus 83 ~~~lRr~vGMVFQkPn---PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 83 VVELRRRVGMVFQKPN---PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHHHheeeccCCC---CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 35888999875 24478888876432 11223455666666665521 2233466789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
|||||+.+|+|||||||||+|||.+...+.++|.+++ -|||+|||++..+.+++|+++++..|++++| |+.+.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~ 234 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDK 234 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHh
Confidence 9999999999999999999999999999999998885 5999999999999999999999999999986 44433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=324.75 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=164.2
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 478999999953 35999999999999999999999999999999999999999999999874 2477888
Q ss_pred cchhcccCCCCCHHHHHhhc--CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 471 QHLHELLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
|... +....|+.+++... ... ...+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 q~~~--~~~~~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 79 EAPG--FYPNLTARENLRLLARLLG-IRKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred CCCc--cCccCcHHHHHHHHHHhcC-CcHHHHHHHHHHcCCHHHH-hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 8753 34456887775432 111 2345678899999997544 4577999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 549 NHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
++||+.+++.+.+.|.++ +.+||+||||++++..+||++++|++|+++.
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999998765 5689999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=332.18 Aligned_cols=219 Identities=25% Similarity=0.339 Sum_probs=161.3
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~----- 73 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD--INKLKGKAL----- 73 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe--ccccCHhHH-----
Confidence 468999999987 789999999999999999999999999999999999999999998875432 111000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh--------hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD--------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
...+..+..+.+....++..+..+++ .... .+.........+++.++++.+|+. ...++++.+||||||
T Consensus 74 -~~~~~~i~~~~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~ 150 (241)
T cd03256 74 -RQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQ 150 (241)
T ss_pred -HHHHhccEEEcccCcccccCcHHHHH-HhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHH
Confidence 00001111111111111111222222 1110 000111123345788899999996 567889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++..+ +.
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~-~~ 229 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG-PP 229 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec-CH
Confidence 9999999999999999999999999999999999988754 689999999999999999999999999998764 44
Q ss_pred HHH
Q psy10512 315 EAF 317 (629)
Q Consensus 315 ~~~ 317 (629)
+.+
T Consensus 230 ~~~ 232 (241)
T cd03256 230 AEL 232 (241)
T ss_pred HHh
Confidence 443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=327.51 Aligned_cols=209 Identities=24% Similarity=0.337 Sum_probs=155.7
Q ss_pred EEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~--~~~~~~~~~----- 74 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED--VNRLRGRQL----- 74 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--cccCCHHHH-----
Confidence 7899999999 46789999999999999999999999999999999999999999998775422 111000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..+.+....++.. +..++.................++.++++.+|+. +..++.+.+|||||+|||+||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~-tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 75 -PLLRRRIGVVFQDFRLLPDR-TVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred -HHHHhheEEEecChhhccCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHH
Confidence 00000011111111111111 2222222111111122333456788999999997 56788899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999988764 6899999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=335.18 Aligned_cols=229 Identities=25% Similarity=0.368 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+............+ ....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~ 83 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL-KVAD 83 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc-cccc
Confidence 499999999999999999999999999999999999999999999999999999999887543211000000000 0000
Q ss_pred c---hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 167 V---DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 167 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
. ...+..+..+.++...++..+..+++......+..........++.++++.+|+.....++++.+|||||||||+|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 0 0000011111111111111122233221111111223334556788999999997444478899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++. |+++.+
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 239 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE-GAPEQL 239 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHh
Confidence 99999999999999999999999999999987654 68999999999999999999999999999976 455443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.96 Aligned_cols=206 Identities=24% Similarity=0.311 Sum_probs=172.5
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------e
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------L 464 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 464 (629)
.+++|+++||++.|++ . .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 8 ~~~~l~i~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 8 SDTTFALRNVSFRVPG-R-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CCceEEEeeEEEEECC-E-EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 4568999999999963 3 4899999999999999999999999999999999999999999998873 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
.++|++|... +....++.+++.... ......+.+..+++.+++... .++++.+|||||+|||+|||||
T Consensus 86 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 86 KVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-AHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred heEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCCHHHHHHHHHHHHH
Confidence 4788888743 334567777764321 011234567889999999754 3457799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||+|||+.++..+.+.|.++ +.+||+||||++++..+||+|++|++|+++ ..|+.+++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELMR 237 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhcC
Confidence 9999999999999999999999999988765 568999999999999999999999999997 4677766643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.40 Aligned_cols=202 Identities=28% Similarity=0.427 Sum_probs=168.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEe
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFAR 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~ 468 (629)
+|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 4789999999963 34899999999999999999999999999999999999999999998763 24778
Q ss_pred eccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|... +....++.+++... .......+.+.++++.+|+.... .+++.+|||||+|||+|||||+.+|++||
T Consensus 79 ~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 79 VFQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERA-DDKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred eCCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888753 33456777765321 11112345678899999997544 45779999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||++||+.+++.+.+.|.++ +.|||+||||++++.. ||++++|++|+++ ..|+.+++..
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVL-ADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEE-EeCCHHHHHH
Confidence 99999999999999999998765 4689999999999975 9999999999997 4677766644
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.37 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=167.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
.|+++|+++.|++ . .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG-K-EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC-e-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 3 4899999999999999999999999999999999999999999998763 2478
Q ss_pred eeccchhcccCCCCCHHHHHhhcCC-ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFP-EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
|++|... .+ ..++.+++..... ......++.++++.+|+......+++.+|||||+|||+|||||+.+|++|||||
T Consensus 81 ~~~q~~~-~~--~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 81 MVFQQPH-LF--EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred EEecCch-hc--hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 8888753 22 2477776542211 112245678899999996333456789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+|||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+..++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE-eCCHHHH
Confidence 99999999999999988764 5799999999999999999999999999974 5666554
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=331.89 Aligned_cols=213 Identities=24% Similarity=0.346 Sum_probs=161.8
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.......
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~------ 72 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED--IREQDPVE------ 72 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE--cCcCChHH------
Confidence 468999999988 789999999999999999999999999999999999999999998775432 11100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc-hhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK-EMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.+..+..+.+....++..+..+++ .....+.........+++.++++.+|+.. ...++++.+|||||+|||+|||
T Consensus 73 ---~~~~i~~~~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 73 ---LRRKIGYVIQQIGLFPHMTVEENI-ALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred ---hhcceEEEccCccccCCCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 000111111111111112222222 22212222233344567889999999974 3678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 219 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999988764 6799999999999999999999999999987643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=330.44 Aligned_cols=213 Identities=25% Similarity=0.332 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCCceEEEeecccCCCCCcchhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE-----VPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~-----~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
|+++||+++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|.+|++.+.+.. +.......
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--~~~~~~~~-- 76 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD--IYDLDVDV-- 76 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE--hhhcchHH--
Confidence 57899999999889999999999999999999999999999999999999 8999998775432 11000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccCh-hhHHHHHHHHHHhCCCCchhhhcc--cCCCChHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA-DTAEARAANILHGLGFTKEMQQKK--TKDFSGGWRM 239 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~~~~--~~~LSGGqrq 239 (629)
...+..+..+.+....+ ..+..+++ ........... .....++.++++.+|+.. ..++. +.+|||||||
T Consensus 77 -----~~~~~~i~~~~q~~~~~-~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 77 -----LELRRRVGMVFQKPNPF-PGSIYDNV-AYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQ 148 (227)
T ss_pred -----HHHHhhEEEEecCchhc-cccHHHHH-HhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHH
Confidence 00000000011111111 11222222 11111111111 224567889999999974 44555 5999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+|||||+.+|++|||||||++||+.++.++.+.|+++. .|||+||||++++..+||++++|++|++++++.
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999997763 699999999999999999999999999987654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=344.67 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=165.0
Q ss_pred eeEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
..|+++|++++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|++.|++|+|.+.+....-.......
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 35999999999974 3599999999999999999999999999999999999999999998864321100000000
Q ss_pred hhhh-----hhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 161 LTCV-----MEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 161 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
.... ......+..+..+.++.. .....+..+++ .+..........+...++.++++.+|+.....++.+.+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI-MFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHH-HhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 0000 000000111111111110 01111222222 1111111223344556788999999996456789999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..|
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999988654 689999999999999999999999999999876
Q ss_pred CcHHH
Q psy10512 312 GNYEA 316 (629)
Q Consensus 312 g~~~~ 316 (629)
.+.+.
T Consensus 259 ~~~~~ 263 (320)
T PRK13631 259 TPYEI 263 (320)
T ss_pred CHHHH
Confidence 55443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=335.96 Aligned_cols=205 Identities=23% Similarity=0.362 Sum_probs=170.3
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
++|+++||++.|+.. ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 378999999999632 234899999999999999999999999999999999999999999998773 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.+.. .....++.+++... .......+.+.++++.+||.+.. ++++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDN-QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-EREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHH-hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7888887532 22345777776432 11112345678899999997544 56779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++ .+||+|++|++|+++ ..|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999999998765 56899999999999 479999999999997 467776653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=331.77 Aligned_cols=204 Identities=23% Similarity=0.408 Sum_probs=169.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------ 464 (629)
.++|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 357999999999953 348999999999999999999999999999999999999999999987631
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC------------------CC--hhhHHHHHHHHHHcCCCCcccccCcCcCChh
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF------------------PE--VKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~------------------~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 524 (629)
.++|++|... +....++.+++.... .. ......+.++++.+|+... .++++.+||||
T Consensus 81 ~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G 157 (255)
T PRK11300 81 GVVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-ANRQAGNLAYG 157 (255)
T ss_pred CeEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-hhCChhhCCHH
Confidence 3667777643 344567777654210 00 0122457788999999754 45678999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecC
Q psy10512 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600 (629)
Q Consensus 525 qkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 600 (629)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~ 236 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANG 236 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecC
Confidence 999999999999999999999999999999999999998764 568999999999999999999999999997 567
Q ss_pred CHHHHH
Q psy10512 601 NILDYK 606 (629)
Q Consensus 601 ~~~~~~ 606 (629)
+.+++.
T Consensus 237 ~~~~~~ 242 (255)
T PRK11300 237 TPEEIR 242 (255)
T ss_pred CHHHHh
Confidence 776654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=326.57 Aligned_cols=204 Identities=29% Similarity=0.363 Sum_probs=156.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|++.+.+.. +... .
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~--~-------- 68 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS--YQKN--I-------- 68 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc--ccch--H--------
Confidence 478999999998899999999999999999999999999999999999999999998875421 1100 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+..+..+.+... ..+..+..++...+...... ...++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 69 -~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 69 -EALRRIGALIEAPG-FYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred -HHHhhEEEecCCCc-cCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHH
Confidence 00000111111111 11112222222222111111 245678899999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|++|||||||++||+.++..+++.|.++ +.|+|+||||++++..+||++++|++|++++.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999988764 68999999999999999999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=333.90 Aligned_cols=219 Identities=24% Similarity=0.327 Sum_probs=160.7
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~----- 74 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD--ITKLRGKKL----- 74 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEE--hhhCCHHHH-----
Confidence 78999999998 7789999999999999999999999999999999999999999998875432 110000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh-------hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD-------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
...+..+..+.+....++..+..+++..... .+..........++.++++.+|+. ...++++.+|||||||
T Consensus 75 -~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 75 -RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQ 152 (243)
T ss_pred -HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHH
Confidence 0000111111111111111122222211000 000111123346788899999996 5678899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+ +.+
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~-~~~ 231 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG-APS 231 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC-CHH
Confidence 999999999999999999999999999999999988754 579999999999999999999999999998654 444
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 232 ~ 232 (243)
T TIGR02315 232 E 232 (243)
T ss_pred H
Confidence 3
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=335.83 Aligned_cols=203 Identities=26% Similarity=0.345 Sum_probs=166.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------------R 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------~ 465 (629)
||+++||++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .
T Consensus 1 ml~~~~l~~~~~~-~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQD-E-PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCC-c-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 5889999999963 3 48999999999999999999999999999999999999999999887631 3
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.....+ ...++.+++... .......+.+.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 79 i~~v~q~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 79 VATVFQDPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred eEEEeeChhhcc-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 678888753212 223454443221 11112234567899999997544 46789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999876 468999999999999999999999999997 467776653
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=330.94 Aligned_cols=202 Identities=27% Similarity=0.451 Sum_probs=168.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
++|+++||++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|+.....
T Consensus 3 ~~l~~~~l~~~~~~-~-~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 3 SLVSLENVSVSFGQ-R-RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred cEEEEeceEEEECC-c-eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 47999999999963 3 489999999999999999999999999999999999999999999988778999999853222
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
....++.+++.. .+. ...+++..+++.+|+.... ++++.+|||||+|||+|||||+.+|++|||||||+|||+.++.
T Consensus 81 ~l~~~~~~~~~~-~~~-~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 157 (251)
T PRK09544 81 TLPLTVNRFLRL-RPG-TKKEDILPALKRVQAGHLI-DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 (251)
T ss_pred ccChhHHHHHhc-ccc-ccHHHHHHHHHHcCChHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 222345554422 111 2345678899999997544 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 558 ALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 558 ~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
.+.+.|.++ +.|||+||||++++..+||+|++|++ +++ ..|+++++.
T Consensus 158 ~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 158 ALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 999998764 56899999999999999999999965 665 467776653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=330.96 Aligned_cols=224 Identities=25% Similarity=0.367 Sum_probs=164.7
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCC-CCcchhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA-SDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~-~~~~~~~~~ 164 (629)
|+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|++.+.+....... ......
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~--- 77 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI--- 77 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH---
Confidence 3589999999999889999999999999999999999999999999999999999999887543210000 000000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
...+..+..+.+....++..+..+++.................++.++++.+|+. ...++.+.+|||||||||+||
T Consensus 78 ---~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 78 ---RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred ---HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 0000011111111111111122222211111111122233456788999999996 567899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||++++|++|++++. ++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~-~~~~~~ 228 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCF 228 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHh
Confidence 9999999999999999999999999999988754 68999999999999999999999999999865 455543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=346.38 Aligned_cols=205 Identities=25% Similarity=0.315 Sum_probs=174.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEE
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFA 467 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~ 467 (629)
.++|+++|+++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+.+|++|+|.+++. ..++
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 468999999999953 34899999999999999999999999999999999999999999998874 2588
Q ss_pred eeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
|++|+.. +...+|+.+++.... +.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus 95 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 95 MMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-KRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864 556778888875332 1122345778999999998654 4577999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 543 LLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||||++||+.+++.+.+.|.+ .+.|+|+||||.+++..+||+|++|++|+++ ..|+++++..
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 99999999999999888766544 4679999999999999999999999999997 4688776543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=302.24 Aligned_cols=200 Identities=26% Similarity=0.373 Sum_probs=168.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce---------eEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL---------RFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------~~~~~ 469 (629)
+|.+++|.+.|+. .--.++++|..||+++|+||+||||||||++|+|+..|.+|+|++++.. .+..+
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 4678999999953 2246789999999999999999999999999999999999999998742 24455
Q ss_pred ccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|.. ++...+++.+++..+.. ....++.+..++.++||.+...+ .+.+|||||||||+|||+|+++-+||+|
T Consensus 77 FQEn--NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~R-LP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 77 FQEN--NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR-LPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred hhcc--ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhh-CccccCchHHHHHHHHHHHhccCCeEEe
Confidence 6653 34556777777755432 12467789999999999987765 4589999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+++|||.-+.++..++.++ +.|++||||..+.+.+++++++++++|+|. |.|+.+++.
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~ 218 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELL 218 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHh
Confidence 9999999999999999888765 569999999999999999999999999996 788876654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=345.69 Aligned_cols=220 Identities=18% Similarity=0.282 Sum_probs=164.9
Q ss_pred eeEEEEeEEEEeCC-------------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc
Q psy10512 86 RDVKIANFSITFHG-------------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152 (629)
Q Consensus 86 ~~i~i~nls~~y~~-------------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~ 152 (629)
.+|+++||+++|+. ..+|+||||+|++||++||+|+||||||||+++|+|++.|++|+|.+.+. +
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~--~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK--D 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCE--E
Confidence 36999999999962 46999999999999999999999999999999999999999999877543 2
Q ss_pred CCCCCcchhhhhhhchHHHHHHHHHHHHH--hccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCchhhhcc
Q psy10512 153 MPASDKSALTCVMEVDEERVRLEKLAEQL--VACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKK 229 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 229 (629)
+........ ...+..+.+++++. ...+..+..+++........ .+...+...++.++|+.+|+..+..+++
T Consensus 85 i~~~~~~~~------~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 85 LLGMKDDEW------RAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred CCcCCHHHH------HHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC
Confidence 211100000 00001111111211 11111222222222111111 2344455677889999999965678999
Q ss_pred cCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCC
Q psy10512 230 TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKR 305 (629)
Q Consensus 230 ~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G 305 (629)
+.+|||||+|||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|.+|
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G 238 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999887653 689999999999999999999999999
Q ss_pred eEEEEcCc
Q psy10512 306 KLKYYGGN 313 (629)
Q Consensus 306 ~i~~~~g~ 313 (629)
++++.+..
T Consensus 239 ~ive~g~~ 246 (331)
T PRK15079 239 HAVELGTY 246 (331)
T ss_pred EEEEEcCH
Confidence 99987644
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=326.49 Aligned_cols=200 Identities=25% Similarity=0.398 Sum_probs=165.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~ 467 (629)
|+++||++.|+. . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK-S-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC-e-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 478999999963 3 4899999999999999999999999999999999999999999998762 2378
Q ss_pred eeccchhcccCCCCCHHHHHhhcC--C-ChhhHHHHHHHHHHc-CCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF--P-EVKDREEMRKIIGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
|++|... +....++.+++.... . .......+..+++.+ ++... .++++.+|||||||||+|||||+.+|++||
T Consensus 79 ~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 155 (222)
T cd03224 79 YVPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKER-RKQLAGTLSGGEQQMLAIARALMSRPKLLL 155 (222)
T ss_pred Eeccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhh-hhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888753 344567777664321 1 112344566788888 46543 356789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 219 (222)
T cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAEL 219 (222)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHH
Confidence 99999999999999999999875 468999999999999999999999999997 46766554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=341.72 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=164.6
Q ss_pred EEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEeeccchhccc
Q psy10512 408 RYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFARYHQHLHELL 477 (629)
Q Consensus 408 ~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~~~q~~~~~~ 477 (629)
.|++ ..+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|++|... +
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~ 77 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--V 77 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--C
Confidence 5642 34899999999999999999999999999999999999999999998773 24788888753 4
Q ss_pred CCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 478 DLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552 (629)
Q Consensus 478 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD 552 (629)
...+|+.+++... .......+++.++++.+||... .++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 4567887765421 1111234567889999999754 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 553 METIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 553 ~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
+.++..+++.|.++ +.|||++|||++++..+||+|++|++|+++ +.|+++++.+.
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~ 214 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence 99999999999876 468999999999999999999999999997 47888776543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=338.62 Aligned_cols=217 Identities=24% Similarity=0.333 Sum_probs=161.3
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCc-ch
Q psy10512 87 DVKIANFSITFHG-----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK-SA 160 (629)
Q Consensus 87 ~i~i~nls~~y~~-----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~-~~ 160 (629)
.|+++||+++|++ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +..... ..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~--i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTL--ITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--ccccccccC
Confidence 4899999999975 369999999999999999999999999999999999999999999875432 111000 00
Q ss_pred hhhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
. ...+..+..+.+... ...+.+..+++ .+..............++.++++.+|+.....++++.+|||||||
T Consensus 80 ~------~~~~~~i~~~~q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 80 I------KQIRKKVGLVFQFPESQLFEETVLKDV-AFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred H------HHHHhheEEEeeChhhhhccccHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 0 000000111111100 01111222222 211111122233445567889999999645678899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++.++.
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999988765 6799999999999999999999999999987654
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=309.68 Aligned_cols=221 Identities=22% Similarity=0.281 Sum_probs=168.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++..++.+|+++||++.+||+.+||||||||||||||.|+|.+.|++|.+.+++..-.. ...
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~--~~~-------- 70 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS--WPP-------- 70 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh--CCH--------
Confidence 4889999999999999999999999999999999999999999999999999999999886533211 000
Q ss_pred chHHHHHHHHHHHH-HhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQ-LVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
........+..+ -...++.+. .++..+...-... ...+..+.+..+|...++. .+..+...+|||||||||.|
T Consensus 71 --~~lA~~raVlpQ~s~laFpFtv-~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 71 --EELARHRAVLPQNSSLAFPFTV-QEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred --HHHHHHhhhcccCcccccceEH-HHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHH
Confidence 010111111111 111122222 2222221111111 1224555688899999996 57889999999999999999
Q ss_pred HHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 244 ARALYV------KPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 244 AraL~~------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
||+|++ ++++|+||||||+||+..+..+++..+++ +..|+.|-||++.+..|||||++|++|++++.|.+.
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 999986 34599999999999999999988887766 678999999999999999999999999999999998
Q ss_pred HHHHHHH
Q psy10512 315 EAFCKTR 321 (629)
Q Consensus 315 ~~~~~~~ 321 (629)
+.+..+.
T Consensus 227 ~vlt~Et 233 (259)
T COG4559 227 DVLTDET 233 (259)
T ss_pred HhcCHHH
Confidence 8876644
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.54 Aligned_cols=203 Identities=19% Similarity=0.323 Sum_probs=170.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~ 466 (629)
+|+++|+++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 6899999999963 34899999999999999999999999999999999999999999998762 247
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|++|... +....++.+++.... ........+.++++.+|+.... +.++.+|||||+|||+|||||+.+|+
T Consensus 81 ~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 81 GYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR-DSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred EEeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHh-hcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 88888753 334467777654321 1112245678899999997543 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEILQ 226 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHhc
Confidence 99999999999999999998888654 568999999999999999999999999997 4788777643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=343.12 Aligned_cols=204 Identities=21% Similarity=0.367 Sum_probs=157.6
Q ss_pred EEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHH
Q psy10512 95 ITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL 174 (629)
Q Consensus 95 ~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (629)
++|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|++.+.+.. +... .. ..+..+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~-~~---------~~~~~i 68 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD--VVRE-PR---------KVRRSI 68 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--cccC-HH---------HHHhhc
Confidence 46888899999999999999999999999999999999999999999999875432 1110 00 001111
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEE
Q psy10512 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254 (629)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iL 254 (629)
..+.+... ..+..+..++...+..+..........++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|
T Consensus 69 ~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 69 GIVPQYAS-VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred EEecCCCC-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111111 112223333333322222333344556788999999996 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 255 LLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||||++||+.++.++++.|+++ +.|||++|||++++..+||+|++|++|+++..+.
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999988765 5899999999999999999999999999997643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=334.32 Aligned_cols=204 Identities=25% Similarity=0.395 Sum_probs=170.7
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------------R 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------~ 465 (629)
+|+++||++.|+... .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. .
T Consensus 1 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 478999999996333 48999999999999999999999999999999999999999999987631 3
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.....+ ...++.+++... .......+.+.++++.+|+.+.. ++++.+|||||+||++|||||+.+|+
T Consensus 80 i~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 80 VGIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred eEEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 688888753222 235777766421 11112235678899999997644 56789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999876 468999999999999999999999999997 468877764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=334.76 Aligned_cols=206 Identities=24% Similarity=0.354 Sum_probs=171.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.++|+++||++.|+.....+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 3579999999999643334899999999999999999999999999999999999999999998873 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.... .....++.+++... .......+.+.++++.+||.... .+++.+|||||||||+|||||+.+|+
T Consensus 83 i~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 83 VGMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-NREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred eEEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899987532 23345787776432 12222345678899999997654 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ +.|+.+++.
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999765 468999999999997 59999999999997 467766543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=331.85 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=163.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~------ 74 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED--ISLLPLHA------ 74 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCCCCHHH------
Confidence 5899999999998899999999999999999999999999999999999999999998875432 11100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+....+....+...+..+++ .....+. .........++.++++.+|+. +..++++.+|||||+|||+|||
T Consensus 75 --~~~~~i~~~~q~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 75 --RARRGIGYLPQEASIFRRLSVYDNL-MAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred --HHHhCeEEeccCCcccccCcHHHHH-hhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHH
Confidence 0000011111111111111222222 2211111 122233456788999999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKT---YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
||+.+|++|||||||++||+.++.++.+.|.+ .+.|||++|||++++..+||++++|++|+++.. ++.+.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 224 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH-GTPTEI 224 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee-CCHHHH
Confidence 99999999999999999999999988887754 468999999999999999999999999999875 444443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=338.56 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=163.7
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++|++++|+ ++.+|+|+||+|.+||++||+||||||||||+++|+|+.+|++|++.+.+............
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~----- 79 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK----- 79 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH-----
Confidence 599999999996 57899999999999999999999999999999999999999999998765332111000000
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+..+..+.+... ...+.+..+++ ................++..+++.+|+. ...++++.+||||||||++||
T Consensus 80 ----~~~~ig~v~q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 80 ----LRESVGMVFQDPDNQLFSASVYQDV-SFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred ----HHhhEEEEecCcchhhccccHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHH
Confidence 0000111111100 00111222222 1111111223344456788999999996 578999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|||+++|++|++++++ +.+.+
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g-~~~~~ 229 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG-NPKEV 229 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC-CHHHH
Confidence 9999999999999999999999999998888654 689999999999999999999999999998765 44443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=329.80 Aligned_cols=211 Identities=27% Similarity=0.378 Sum_probs=159.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--i~~~~~~~------ 72 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD--LRRAPRAA------ 72 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE--cccCChhh------
Confidence 3789999999998899999999999999999999999999999999999999999998875432 11100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+..+....+.....+. .+..++..................+.++++.+|+. ...++++.+|||||+||++||||
T Consensus 73 ----~~~i~~~~q~~~~~~~-~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 73 ----LARLGVVFQQPTLDLD-LSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred ----hhhEEEeCCCCCCccc-CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHH
Confidence 0000001111011111 12222222221111222233456788899999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++.. ||++++|++|+++..+.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~ 215 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGA 215 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999988754 5799999999999975 99999999999987643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=329.04 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=155.6
Q ss_pred EEEEeEEEEeCCe----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~~----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|++++|++. ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~~-- 77 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD--LLKLSRRLR-- 77 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--ccccchhhH--
Confidence 7899999999865 79999999999999999999999999999999999999999999875432 111000000
Q ss_pred hhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccCh-hhHHHH-HHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISA-DTAEAR-AANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+..+.++.. .+.+..+..++............ ...... +.++++.+++.....++++.+||||||||
T Consensus 78 ----~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 153 (228)
T cd03257 78 ----KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR 153 (228)
T ss_pred ----HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHH
Confidence 000000101111110 01111122222211111111111 111222 35789999995456788999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 99999999999999999999999999999999988754 67999999999999999999999999998753
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=344.03 Aligned_cols=221 Identities=20% Similarity=0.277 Sum_probs=163.9
Q ss_pred eEEEEeEEEEeCC----------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCC
Q psy10512 87 DVKIANFSITFHG----------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156 (629)
Q Consensus 87 ~i~i~nls~~y~~----------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~ 156 (629)
.|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|++.|++|++.+.+. ++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~--~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQ--DLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCE--EcCcC
Confidence 5999999999962 47999999999999999999999999999999999999999999887543 22111
Q ss_pred CcchhhhhhhchHHHHHHHHHHHHHh-ccCChhHH-HHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 157 DKSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQ-EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
....+. ..+..+..++++.. .+.+..+. +.+.............+...++.++|+.+||.....++++.+||
T Consensus 83 ~~~~~~------~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LS 156 (327)
T PRK11308 83 DPEAQK------LLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFS 156 (327)
T ss_pred CHHHHH------HHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCC
Confidence 000000 00000111111100 01111111 11111111101233344567889999999997556799999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||+|||+|||||+.+|+||||||||++||+.++.++++.|.++ +.|||+||||++++..+||+|++|++|+++++
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999988653 68999999999999999999999999999988
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
+...+
T Consensus 237 g~~~~ 241 (327)
T PRK11308 237 GTKEQ 241 (327)
T ss_pred CCHHH
Confidence 65443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=336.56 Aligned_cols=206 Identities=20% Similarity=0.276 Sum_probs=167.1
Q ss_pred CeEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------
Q psy10512 398 PVIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 463 (629)
..|+++|++++|+... ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996432 23899999999999999999999999999999999999999999988652
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|.....+ ...++.+++... .......+.+.++++.+++......+++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 13678888752112 224666655321 1111123456788999999533345678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999988765 4689999999999999999999999999974 6776665
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=327.49 Aligned_cols=202 Identities=23% Similarity=0.320 Sum_probs=170.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce--------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------------- 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------- 464 (629)
+|+++|+++.|+. . .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA-H-QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC-e-eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 5889999999963 3 48999999999999999999999999999999999999999999987631
Q ss_pred ---eEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 465 ---RFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ---~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
.++|++|... +....++.+++... .........+.++++.+|+.... ++++.+|||||||||+|||||
T Consensus 80 ~~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 80 LRRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHH
Confidence 3678888653 34456777776421 11112245678899999997543 557799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+||++++|++|+++ +.|+++++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 9999999999999999999999999999865 568999999999999999999999999997 578877653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.80 Aligned_cols=191 Identities=24% Similarity=0.427 Sum_probs=161.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------eeE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------LRF 466 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~~ 466 (629)
|+++||++.|+. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 34899999999999999999999999999999999999999999998763 136
Q ss_pred EeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|++|... +....++.+++... .......+.+.++++.+|+... .++++.+|||||+|||+|||||+.+|+
T Consensus 79 ~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 79 GMVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred eEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-hhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 78888753 33456777765321 1111234567889999999754 356789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+|||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|++
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999876 46899999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=330.65 Aligned_cols=218 Identities=18% Similarity=0.301 Sum_probs=163.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|+++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~----- 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD--LTGLPEHQI----- 74 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCee--cCCCCHHHH-----
Confidence 4899999999998889999999999999999999999999999999999999999999876432 111000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh--------ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD--------DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
.+..+....+....+ +..+..++........ .........++.++++.+|+. ...++++.+|||||+
T Consensus 75 ---~~~~i~~~~q~~~~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 75 ---ARAGIGRKFQKPTVF-ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQK 149 (242)
T ss_pred ---HhcCeeEeccccccC-CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHH
Confidence 000011111111111 1112222222211100 011123456788999999997 567889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++..+ +.++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~-~~~~ 228 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG-SLDQ 228 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC-CHHH
Confidence 9999999999999999999999999999999999999876 479999999999999999999999999998764 4444
Q ss_pred H
Q psy10512 317 F 317 (629)
Q Consensus 317 ~ 317 (629)
+
T Consensus 229 ~ 229 (242)
T TIGR03411 229 V 229 (242)
T ss_pred H
Confidence 3
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=326.26 Aligned_cols=212 Identities=21% Similarity=0.283 Sum_probs=158.2
Q ss_pred EEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--i~~~~~~~~----- 74 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHD--ITRLKNREV----- 74 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--cccCChhHH-----
Confidence 7899999999 67789999999999999999999999999999999999999999998875421 110000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+....+....++..+..++ .................++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 75 -PFLRRQIGMIFQDHHLLMDRTVYDN-VAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred -HHHHhheEEEecCccccccccHHHH-HHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHH
Confidence 0000011111111111111122222 22111111223333445678899999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
|+.+|++|||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||+|++|++|+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999888765 5799999999999999999999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=325.77 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=156.1
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--i~~~~~~~~----- 73 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD--VSDLRGRAI----- 73 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--cccCCHHHH-----
Confidence 468999999964 689999999999999999999999999999999999999999998775421 111000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..+.+....++..+..+++ ................++.++++.+|+. ...++++.+||||||||++||||
T Consensus 74 -~~~~~~i~~v~q~~~~~~~~t~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 74 -PYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred -HHHHHheEEEecCchhccCCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHH
Confidence 00001111111111111111222222 2221111222334456788999999996 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
|+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999988765 58999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=331.43 Aligned_cols=217 Identities=23% Similarity=0.315 Sum_probs=162.4
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|+|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +......
T Consensus 1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~------ 72 (255)
T PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP--ISMLSSR------ 72 (255)
T ss_pred CEEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEE--hHHCCHH------
Confidence 35899999999999899999999999999999999999999999999999999999998775421 1000000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHh----hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYD----RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+..+..+.++...+ +..+..++..... .+..........++.++++.+|+. ...++++.+|||||+|||
T Consensus 73 ---~~~~~i~~~~q~~~~~-~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 73 ---QLARRLALLPQHHLTP-EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRA 147 (255)
T ss_pred ---HHhhheEEecccCCCC-CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHH
Confidence 0000111111111111 1112222222110 000111123345678899999996 567899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++..+ +.+.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 224 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG-TPEE 224 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEc-CHHH
Confidence 9999999999999999999999999999999988754 679999999999999999999999999998654 4443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=330.53 Aligned_cols=203 Identities=27% Similarity=0.384 Sum_probs=170.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
+|+++|+++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 6899999999963 34899999999999999999999999999999999999999999998773 2367
Q ss_pred eeccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc------
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW------ 536 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~------ 536 (629)
|++|... +....++.+++..... .......+.++++.+|+.... ++.+.+|||||||||+|||||+
T Consensus 80 ~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 80 VLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-GRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred EEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 8888743 3345688877643211 112345678899999997543 4578999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 599999999999999999999999998765 468999999999999999999999999997 4688776643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=322.81 Aligned_cols=225 Identities=24% Similarity=0.325 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCe------------------------eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 87 DVKIANFSITFHGC------------------------ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 87 ~i~i~nls~~y~~~------------------------~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
.|+++|+++-||.+ .-++|+||+|+.||++.|+|-||||||||+|+|++++.|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999752 257999999999999999999999999999999999999999
Q ss_pred ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC
Q psy10512 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222 (629)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 222 (629)
++.+.+. ++...+...+. ...+..+.+++|++..++..+..++ ..+...+..++..+.++++.++|+.+||.
T Consensus 84 ~ilv~g~--di~~~~~~~Lr-----~~Rr~~~sMVFQ~FaLlPhrtVl~N-v~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 84 EILVDGK--DIAKLSAAELR-----ELRRKKISMVFQSFALLPHRTVLEN-VAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred eEEECCc--chhcCCHHHHH-----HHHhhhhhhhhhhhccccchhHhhh-hhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 9987543 33222222111 1233456677788777766554443 33334556778888899999999999997
Q ss_pred chhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcce
Q psy10512 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 223 ~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ 298 (629)
.+.++++.+||||+||||-|||||+.+|+|||||||+|+|||--+..+.+.| +++++||||||||++++.++.||
T Consensus 156 -~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 156 -GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred -hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 6789999999999999999999999999999999999999998877766655 45589999999999999999999
Q ss_pred eEEEcCCeEEEEcCcHHHHHHH
Q psy10512 299 IIHLDKRKLKYYGGNYEAFCKT 320 (629)
Q Consensus 299 ii~l~~G~i~~~~g~~~~~~~~ 320 (629)
|.+|++|+|+..|.|.+....+
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCc
Confidence 9999999999988887665443
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=328.57 Aligned_cols=203 Identities=21% Similarity=0.323 Sum_probs=165.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CCCccEEEECCc------------ee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TPSVGMVRKNSH------------LR 465 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~ 465 (629)
|+++||++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 34899999999999999999999999999999999995 799999998763 12
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc---C---------CChhhHHHHHHHHHHcCCCCcccccCcC-cCChhHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS---F---------PEVKDREEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRVVFA 532 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~lA 532 (629)
++|++|... +....++.+++... . ......+.+.++++.+|+......+++. +|||||||||+||
T Consensus 79 i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 79 LFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred eEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 677777753 23445666654221 0 0011235678899999997433345665 5999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+ ||++++|++|+++ +.|+++++++
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE 234 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence 9999999999999999999999999999999876 46899999999999998 8999999999997 5788776553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=334.69 Aligned_cols=201 Identities=20% Similarity=0.270 Sum_probs=168.3
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------ee
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------LR 465 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ 465 (629)
.++|+++.|+. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 57799999953 34899999999999999999999999999999999999999999998762 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|... +....++.+++... .......+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 104 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 104 ISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-HKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred EEEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 788888753 33456777766431 11112345678899999997544 55779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.+
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 250 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEILT 250 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999998765 468999999999999999999999999997 4677776643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.29 Aligned_cols=214 Identities=18% Similarity=0.289 Sum_probs=161.6
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--i~~~~~~---- 77 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL--LTEENVW---- 77 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--CCcCcHH----
Confidence 5999999999974 459999999999999999999999999999999999999999998875432 1110000
Q ss_pred hhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..+..+..+.++.. .+...+..+++ ............+...++.++++.+|+. +..++++.+|||||+|||+
T Consensus 78 -----~~~~~i~~v~q~~~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 78 -----DIRHKIGMVFQNPDNQFVGATVEDDV-AFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVA 150 (279)
T ss_pred -----HHHhhceEEEcChHHhcccccHHHHH-HhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 00111111111110 11111222222 2111111233444566789999999996 5779999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. +||+|++|++|+++..+.+.
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999988654 689999999999995 89999999999998775543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=330.15 Aligned_cols=215 Identities=24% Similarity=0.291 Sum_probs=161.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
|+++||+++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|++.+.+.. +.......
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~--~~~~~~~~-- 77 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD--IYDKKIDV-- 77 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEE--ccccccch--
Confidence 78999999999888999999999999999999999999999999999999988 8888775432 11100000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGWR 238 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqr 238 (629)
...+..+..+.+....+ +.+..+++ ........ ........++.++++.+|+.. +..++++.+||||||
T Consensus 78 -----~~~~~~i~~v~q~~~~~-~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 -----VELRRRVGMVFQKPNPF-PMSIYDNI-AYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred -----HHHHhheEEEecCcccC-CCCHHHHH-HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 00000111111111111 12222222 21111111 122344567888999999962 456888999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999998765 37999999999999999999999999999876543
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=327.33 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=168.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-----ccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-----VGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~---------- 463 (629)
+|+++||++.|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 1 ~l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGE-K-EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECC-e-eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 4789999999963 3 4899999999999999999999999999999999999998 999998763
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhc--C----CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQS--F----PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... +.. .++.+++... . ......+.+..+++.+|+.. ....+++.+|||||||||+|
T Consensus 79 ~~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 79 ELRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 23778888753 233 6777766421 1 11123456788999999962 22345789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++. .|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999999998763 68999999999999999999999999997 467776653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=329.56 Aligned_cols=205 Identities=21% Similarity=0.270 Sum_probs=168.9
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc-------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~------- 463 (629)
.+|+|+++||++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|++. |++|+|.+++.
T Consensus 3 ~~~~l~~~~l~~~~~~-~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 3 SPPKMEARGLSFFYGD-F-QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CCcEEEEeeeEEEECC-e-eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 3678999999999963 3 48999999999999999999999999999999999974 68999988762
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhcC--C---C-hhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQSF--P---E-VKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCR 528 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqr 528 (629)
..++|++|... +.. .++.+++.... . . ....+++..+++.+|+... ...+++.+||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 81 DVVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred CHHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 24788888753 222 47777664221 1 1 1224567888999998531 2345778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF 236 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999999999876 368999999999999999999999999997 467776653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=329.27 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=170.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
+|+++|++++|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 6899999999963 348999999999999999999999999999999999999999999987731 378
Q ss_pred eeccchhcccCCCCCHHHHHhhcC-------C--ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF-------P--EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
|++|... +....++.+++.... . .....+.+..+++.+|+.... ++++.+|||||+|||+||||++.+
T Consensus 80 ~~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 80 LLPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-DRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred EecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 8888753 334557777664321 1 112345678899999997543 567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++|||||||+|||+.+++.+.+.|.++ +.|||++|||++++.++||++++|++|+++ ..|+++++.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence 9999999999999999999999999765 468999999999999999999999999997 567777664
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=306.36 Aligned_cols=220 Identities=22% Similarity=0.303 Sum_probs=172.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+++++|++|++|.+++|||||||||||||.+++.+.++++|++.+.+.. +...+...+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~--~~~~~s~~L----- 73 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE--LTSTPSKEL----- 73 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeee--cccCChHHH-----
Confidence 4889999999999999999999999999999999999999999999999999999999887543 222211111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhh--hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDR--LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
...+.-+.++ .......++.++..+... -......+.+..+.++++.|+|+ ++.+++..+||||||||..||
T Consensus 74 ----Ak~lSILkQ~-N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 74 ----AKKLSILKQE-NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred ----HHHHHHHHhh-chhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhh
Confidence 1111111111 111111233333332111 11223446677899999999997 689999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
..|+++.+.+|||||.|+||......++..|+ ++++|||+|-||.+|+..++|+|+.|++|+++..|.+.+.+..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999888876 4589999999999999999999999999999988776655543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=325.35 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=166.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEE
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~ 467 (629)
|+++||++.|+. . .+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ-S-HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC-e-EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999963 3 4899999999999999999999999999999999999999999998762 2478
Q ss_pred eeccchhcccCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcC-CCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYG-LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
|++|... +....++.+++.... ......+.+.++++.++ +.. ..++++.+|||||+|||+|||||+.+|++|||
T Consensus 79 ~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 79 YVPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE-MLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred EeccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 8888753 334567777654321 11112334567788887 443 34567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..+.+.|.++ +.|||+||||++++..+||+++++++|+++ ..|+.+++.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~ 220 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELD 220 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcC
Confidence 9999999999999999999775 468999999999999999999999999997 467776653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.36 Aligned_cols=218 Identities=25% Similarity=0.367 Sum_probs=161.0
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC
Q psy10512 87 DVKIANFSITFH---------GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~---------~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~ 157 (629)
+|+++||++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD--LYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--ccccC
Confidence 489999999996 3679999999999999999999999999999999999999999999875432 11100
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHH-HHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMD-IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
..... ..+..+..+.++.. .+.+..+..++.. .......+.......++.++++.+|+.....++++.+|||
T Consensus 80 ~~~~~------~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 153 (265)
T TIGR02769 80 RKQRR------AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG 153 (265)
T ss_pred HHHHH------HHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence 00000 00000111111110 1111112222211 1111112223334567889999999964567889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+|||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..+
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999999999998888654 689999999999999999999999999998764
Q ss_pred C
Q psy10512 312 G 312 (629)
Q Consensus 312 g 312 (629)
.
T Consensus 234 ~ 234 (265)
T TIGR02769 234 D 234 (265)
T ss_pred C
Confidence 4
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=325.43 Aligned_cols=201 Identities=23% Similarity=0.371 Sum_probs=152.1
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhch
Q psy10512 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168 (629)
Q Consensus 89 ~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 168 (629)
+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~-------------- 64 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP--LE-------------- 64 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc--HH--------------
Confidence 36899999998889999999999999999999999999999999999999999998875321 10
Q ss_pred HHHHHHHHHHHHHhccC-ChhHHHHHHHHHhhhh-c---cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 169 EERVRLEKLAEQLVACE-DDESQEQLMDIYDRLD-D---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
..+..+..+.++..... ...+..++........ . ........++.++++.+|+. +..++++.+|||||||||+|
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHH
Confidence 00001111111111000 0012222221111000 0 11123446788999999996 56788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|.
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 99999999999999999999999999999988765 5799999999999999999999998863
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=326.93 Aligned_cols=206 Identities=23% Similarity=0.372 Sum_probs=173.1
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-C----CccEEEECCc--------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-P----SVGMVRKNSH-------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p----~~G~i~~~~~-------- 463 (629)
+|+++||+..|.... ..+++||||+|++||++||||.|||||||+.+.|+|+++ | .+|+|.++|.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999996432 348999999999999999999999999999999999998 4 5789988763
Q ss_pred -------eeEEeeccchhcccCCCCCHHHHHhhc----C---CChhhHHHHHHHHHHcCCCCc--ccccCcCcCChhHHH
Q psy10512 464 -------LRFARYHQHLHELLDLDISPLDYMLQS----F---PEVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKC 527 (629)
Q Consensus 464 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqkq 527 (629)
..+++++|++...+++..++-..+... . ......+++.++|+.+||+.. ..+.++++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 258899999877777777765443221 1 112345678899999999865 445678999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 603 (629)
||+||.||+.+|+|||.||||++||...+.+++++|+++ +.++|+||||+..+.++||||+||..|+|++ .|+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHH
Confidence 999999999999999999999999999999999998765 5689999999999999999999999999986 57665
Q ss_pred HH
Q psy10512 604 DY 605 (629)
Q Consensus 604 ~~ 605 (629)
++
T Consensus 240 ~i 241 (316)
T COG0444 240 EI 241 (316)
T ss_pred HH
Confidence 44
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=315.34 Aligned_cols=204 Identities=24% Similarity=0.443 Sum_probs=180.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------eeEEeecc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------LRFARYHQ 471 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~~~~~~q 471 (629)
.|++++|+++|++ ..+++|+||+|++|++.|++|||||||||++|+|.|+++|++|+|.++|. .++||++.
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence 5899999999964 34899999999999999999999999999999999999999999999884 37899987
Q ss_pred chhcccCCCCCHHHHHh-----hcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 472 HLHELLDLDISPLDYML-----QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
.. .+...+++.+.+. .+++.......+..||+++++.+.. .+++.+||-|++|++.|..+++++|++|||||
T Consensus 80 ER--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~-~~kIk~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 80 ER--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK-TKKIKELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred hh--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc-cchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 64 3566788877542 2455556677889999999998765 46899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
|+|||||-+.+.|.+.+.++ +.|||++||.++-++++||++++|++|+.+ ..|+..+.++.
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~ 220 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRS 220 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHh
Confidence 99999999999999998765 679999999999999999999999999987 57998888764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=327.51 Aligned_cols=204 Identities=19% Similarity=0.281 Sum_probs=168.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC----CccEEEECCc---------ee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SVGMVRKNSH---------LR 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~---------~~ 465 (629)
+|+++||++.| +. .+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++. ..
T Consensus 4 ~l~~~~l~~~~--~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA--AQ-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe--cc-ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 68999999999 23 389999999999999999999999999999999999999 9999998763 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhh---cCCChhhHHHHHHHHHHcCCCCc--ccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQ---SFPEVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.....+....++.+++.. ........+.+.++++.+|+... ...+++.+|||||+|||+|||||+.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 788888753223333455444321 11111234678899999999752 2345779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 229 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLF 229 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999999998765 468999999999999999999999999997 567777664
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=338.14 Aligned_cols=216 Identities=19% Similarity=0.268 Sum_probs=160.7
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccC--CC-CCc
Q psy10512 87 DVKIANFSITFHGC-----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM--PA-SDK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~-----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~--~~-~~~ 158 (629)
.|+++|++++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|++.+.+..... .. ...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 59999999999864 49999999999999999999999999999999999999999998875432100 00 000
Q ss_pred ----chhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 159 ----SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 159 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
..+.++.+... ...... +..++.................++.++++.+++.....++++.+||
T Consensus 86 ~~~~~~i~~v~q~~~------------~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS 152 (289)
T PRK13645 86 KRLRKEIGLVFQFPE------------YQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELS 152 (289)
T ss_pred HHHhccEEEEEeCcc------------hhhhhh-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCC
Confidence 00001100000 000001 1111111111111122233445678899999995457789999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999887654 67999999999999999999999999999877
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
+.+.+
T Consensus 233 g~~~~ 237 (289)
T PRK13645 233 GSPFE 237 (289)
T ss_pred CCHHH
Confidence 65443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=326.11 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=167.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
++|+++|+++.|+. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 57999999999963 34899999999999999999999999999999999999999999998763 13
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC--CC-hhhHHHHHHHHHHc-CCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF--PE-VKDREEMRKIIGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
++|++|... +....++.+++.... .. ....+.+.++++.+ ++.... ..++.+|||||+|||+|||||+.+|++
T Consensus 82 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 82 VAIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERR-IQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred EEEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH-hCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 778887643 334567777764321 11 11234566777777 465433 457789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|++++..
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 9999999999999999999998765 568999999999999999999999999997 578876654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=326.21 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=157.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++++|+|+||+|.+|+++||+|||||||||||++|+|+++|+.|++.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~------ 72 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD--ITGLPPHER------ 72 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--cCCCCHHHH------
Confidence 578999999998899999999999999999999999999999999999999999999875432 111000000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC-CCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL-GFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+..+..+.+....++..+..+++ ....... .......++.++++.+ ++. +..++++.+|||||||||+||||
T Consensus 73 --~~~~i~~~~q~~~~~~~~t~~~~l-~~~~~~~--~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 73 --ARAGIGYVPEGRRIFPELTVEENL-LLGAYAR--RRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred --HhcCeEEeccccccCCCCcHHHHH-HHHhhhc--CchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHH
Confidence 000011111111111111222222 2111111 1122344567778887 464 56788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|+.+|++|||||||++||+.++..+++.|+++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 99999999999999999999999999988765 579999999999999999999999999998654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=368.23 Aligned_cols=205 Identities=29% Similarity=0.467 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
++|+++||+++|++ . .+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+++...+++++|....
T Consensus 2 ~~l~i~~ls~~~~~-~-~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~-- 77 (635)
T PRK11147 2 SLISIHGAWLSFSD-A-PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR-- 77 (635)
T ss_pred cEEEEeeEEEEeCC-c-eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC--
Confidence 37999999999964 3 4899999999999999999999999999999999999999999999876666776664311
Q ss_pred CCCCCHHHHHh------------------------------------h---cCCChhhHHHHHHHHHHcCCCCcccccCc
Q psy10512 478 DLDISPLDYML------------------------------------Q---SFPEVKDREEMRKIIGRYGLTGRQQVCPI 518 (629)
Q Consensus 478 ~~~~~~~~~~~------------------------------------~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 518 (629)
....++.+++. . .........++..+++.+||.. ++++
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~ 154 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAAL 154 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCch
Confidence 11112211110 0 0001112456788999999962 4688
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEe
Q psy10512 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 519 ~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 598 (629)
.+|||||||||+|||||+.+|+||||||||||||+.++.+|.+.|.+++++||+||||++++..+||+|++|++|+++.+
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999888
Q ss_pred cCCHHHHHHHH
Q psy10512 599 EGNILDYKETL 609 (629)
Q Consensus 599 ~g~~~~~~~~~ 609 (629)
.|+|..|.+..
T Consensus 235 ~g~~~~~~~~~ 245 (635)
T PRK11147 235 PGNYDQYLLEK 245 (635)
T ss_pred cCCHHHHHHHH
Confidence 99999886643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=332.05 Aligned_cols=203 Identities=24% Similarity=0.329 Sum_probs=167.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~ 466 (629)
+|+++||++.|+.+. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ml~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGT-PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCC-ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 478999999995333 4899999999999999999999999999999999999999999988763 136
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|.+... ....++.+++... .......+.+.++++.+|+.... +.++..|||||+|||+|||||+.+|+|
T Consensus 80 ~~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 80 GIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-HRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred EEEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-cCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 7888875322 2335777765321 11112345678889999997644 467899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||+|||+.++..+.+.|.++ +.|||++|||++++. .||+|++|++|+++ ..|+.+++.
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999765 468999999999995 69999999999997 467776653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=328.13 Aligned_cols=201 Identities=22% Similarity=0.360 Sum_probs=168.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------- 463 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 463 (629)
|+++||++.|+. . .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI-L-TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC-e-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999963 3 4899999999999999999999999999999999999999999988763
Q ss_pred --------eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHH
Q psy10512 464 --------LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 --------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +....++.+++... .......+.+.++++.+|+.... ++++.+|||||+|||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-DHMPAQLSGGQQQRV 155 (252)
T ss_pred hhHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-hcChhhcCHHHHHHH
Confidence 13677777643 34456777766431 11112345678899999997543 456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEI 234 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999999999999998764 568999999999999999999999999997 56777666
Q ss_pred H
Q psy10512 606 K 606 (629)
Q Consensus 606 ~ 606 (629)
.
T Consensus 235 ~ 235 (252)
T TIGR03005 235 F 235 (252)
T ss_pred h
Confidence 4
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=323.67 Aligned_cols=201 Identities=26% Similarity=0.424 Sum_probs=169.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. . ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 1 MLKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred CeEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 4789999999953 2 34999999999999999999999999999999999999999998763 247888
Q ss_pred ccchhcccCCCCCHHHHHhhcC-C----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF-P----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|... +....++.+++.... + .....+++.++++.+|+... .++++.+|||||+|||+||||++.+|++|||
T Consensus 77 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 77 FQENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred ecccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88753 344567777764321 1 11234568889999999754 4567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999988765 468999999999999999999999999997 5788777654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=330.52 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=169.5
Q ss_pred CeEEEEEEEEEEcCC-------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------
Q psy10512 398 PVIMVQNVSFRYSDD-------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 463 (629)
++|+++||++.|+.+ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 378999999999631 235899999999999999999999999999999999999999999998763
Q ss_pred -------eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHH
Q psy10512 464 -------LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 -------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|.....+....++.+++.. ..........+.++++.+|+......+++.+|||||+|||+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 14788888753234445566665421 11111233467899999999643445678999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+..+.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 239 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK 239 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence 999999999999999999999999999999988765 568999999999999999999999999997 45665553
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=352.88 Aligned_cols=223 Identities=24% Similarity=0.338 Sum_probs=168.2
Q ss_pred eeEEEEeEEEEeCC-----------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCC
Q psy10512 86 RDVKIANFSITFHG-----------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP 154 (629)
Q Consensus 86 ~~i~i~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~ 154 (629)
..++++||++.|.. ..+++||||+|.+||++||||+||||||||.|+|+|+..|+.|.+.+.+....+.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 46899999999973 3589999999999999999999999999999999999999999988765431111
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHH-hccCChhHHHHH-HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 155 ASDKSALTCVMEVDEERVRLEKLAEQL-VACEDDESQEQL-MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
.... ...+..+...++.- ....+..+.... .............+..+++.++|+.+|++.+..++++++
T Consensus 359 ~~~~---------~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e 429 (539)
T COG1123 359 GGEL---------RRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429 (539)
T ss_pred cchh---------hhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 1000 00111111111110 111111222222 111111111223455668999999999998889999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|||||||||+|||||+.+|++|++|||||+||+..+..+.+.|++ ++.|.||||||++++..+||||++|++|+|+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999998888764 4789999999999999999999999999999
Q ss_pred EEcCcHHHH
Q psy10512 309 YYGGNYEAF 317 (629)
Q Consensus 309 ~~~g~~~~~ 317 (629)
+.|.....|
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 998554444
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=331.01 Aligned_cols=224 Identities=20% Similarity=0.304 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC---cc--hhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD---KS--ALT 162 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~---~~--~~~ 162 (629)
|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++.|++|++.+.+.. +.... .. ...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQ--LYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--ccccccccccccccc
Confidence 578999999998899999999999999999999999999999999999999999998775432 11000 00 000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
. ......+..+..+.+....++..+..+++..................+.++++.+|+. +..++.+.+|||||+|||+
T Consensus 79 ~-~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 79 E-KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred h-hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHH
Confidence 0 0000000011111111111111222222221111111122334456788999999996 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++++.+ +.+.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g-~~~~ 233 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG-KPDE 233 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC-CHHH
Confidence 999999999999999999999999999999988653 679999999999999999999999999998764 4443
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=329.48 Aligned_cols=217 Identities=23% Similarity=0.260 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+. .|++|+|.+.+.. +........
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~--~~~~~~~~~---- 74 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD--LLELEPDER---- 74 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe--cCCCCHHHh----
Confidence 57899999999889999999999999999999999999999999999995 6889998875432 111000000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh------ccChhhHHHHHHHHHHhCCCCchhhhcccC-CCChHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD------DISADTAEARAANILHGLGFTKEMQQKKTK-DFSGGWR 238 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqr 238 (629)
.+..+..+.+....++..+..+++........ .........++.++++.+|+.....++++. +||||||
T Consensus 75 ----~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 75 ----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ----hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 00000011111111111111222211111110 012223346788999999997455677776 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEEcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~~g~~ 314 (629)
|||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+ ||++++|++|+++..+ +.
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g-~~ 229 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG-DV 229 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec-CH
Confidence 9999999999999999999999999999999999998776 57999999999999998 8999999999998654 44
Q ss_pred H
Q psy10512 315 E 315 (629)
Q Consensus 315 ~ 315 (629)
+
T Consensus 230 ~ 230 (243)
T TIGR01978 230 E 230 (243)
T ss_pred H
Confidence 4
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=310.63 Aligned_cols=204 Identities=22% Similarity=0.358 Sum_probs=173.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC------------cee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS------------HLR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 465 (629)
++|.++|+.++|+. ..++++|||+|++||++||.|||||||||.+.+++|+.+|++|.|.+++ +..
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 46899999999953 3489999999999999999999999999999999999999999999876 246
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC---C--Ch--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF---P--EV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~--~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
++|++|... .+-.+|+.+++.... . .. ..+.++.++|+.|++.+.. +++..+||||||+||.|||||+.+
T Consensus 81 igYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-DSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-cCcccccccchHHHHHHHHHHhcC
Confidence 899999875 456788888765321 1 11 2234567999999998654 568899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAIND---FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~---~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+++|||||++|.||-+...+.+++.. .+.+|+++-|+..+...+|||.+++.+|+|. ..|+++++.+
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~ 228 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN 228 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence 999999999999999887777666654 4678999999999999999999999999997 6899988753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=361.94 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=176.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.+|+++||++.|+++. ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++. +
T Consensus 3 ~~i~~~nls~~~~~~~-~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 79 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK-EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--L 79 (552)
T ss_pred EEEEEeeEEEecCCCC-eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--C
Confidence 4799999999996233 489999999999999999999999999999999999999999999987778999999863 3
Q ss_pred CCCCCHHHHHhhcC-------------------CChh----------------------hHHHHHHHHHHcCCCCccccc
Q psy10512 478 DLDISPLDYMLQSF-------------------PEVK----------------------DREEMRKIIGRYGLTGRQQVC 516 (629)
Q Consensus 478 ~~~~~~~~~~~~~~-------------------~~~~----------------------~~~~~~~~l~~~gl~~~~~~~ 516 (629)
....|+.+++.... +... ...++.++++.+|+.. .++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~ 157 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDA 157 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccC
Confidence 34567776653211 0000 0134566788888853 356
Q ss_pred CcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 517 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
++.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|.+++++||+||||++++..+||++++|++|+++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 78999999999999999999999999999999999999999999999999889999999999999999999999999987
Q ss_pred EecCCHHHHHHHH
Q psy10512 597 KWEGNILDYKETL 609 (629)
Q Consensus 597 ~~~g~~~~~~~~~ 609 (629)
.+.|++++|.+..
T Consensus 238 ~~~g~~~~~~~~~ 250 (552)
T TIGR03719 238 PWEGNYSSWLEQK 250 (552)
T ss_pred EecCCHHHHHHHH
Confidence 7899999887643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=341.14 Aligned_cols=222 Identities=18% Similarity=0.257 Sum_probs=161.5
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CCCceEEEeecccCCCCCc
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP----VPDHIDIFHLTREMPASDK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p----~~g~i~i~~~~~~~~~~~~ 158 (629)
+|+++||++.|++ ..+|+||||+|++||++||+|+||||||||+++|+|++.| ++|.|.+.+. ++.....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~--~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ--DLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE--ECCcCCH
Confidence 4899999999976 4799999999999999999999999999999999999874 6777766542 2211110
Q ss_pred chhhhhhhchHHHHHHHHHHHHHh-ccCC-hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc--hhhhcccCCCC
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLV-ACED-DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK--EMQQKKTKDFS 234 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LS 234 (629)
...... .+..+..+.++.. .+.+ ......+.............+..+++.++|+.+||.. ...++++.+||
T Consensus 81 ~~~~~~-----r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 81 KERRNL-----VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHHH-----hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 000000 0000111111100 0111 1111222111111112233455678899999999963 35688999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||+|||+|||||+.+|+||||||||++||+.++..++++|+++ +.|+|+||||++++..+||+|++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999888654 67999999999999999999999999999988
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
+...+
T Consensus 236 g~~~~ 240 (326)
T PRK11022 236 GKAHD 240 (326)
T ss_pred CCHHH
Confidence 65443
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=298.74 Aligned_cols=208 Identities=20% Similarity=0.298 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|.++++.++|+..+. .++++|+.||+++|+|||||||||||++|+|++.|.+|++.|++.+..-.....
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--------- 70 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--------- 70 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc---------
Confidence 678899999987653 578999999999999999999999999999999999999999765432211111
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..++++...+...+ +.++..+...-. .+ ....++++..++..+|+. .+.+|.+.+|||||||||+|||+
T Consensus 71 ----RPVSmlFQEnNLFaHLt-V~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 71 ----RPVSMLFQENNLFAHLT-VAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred ----CChhhhhhccccchhhh-hhhhhcccCCccccc-CHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHH
Confidence 11222333322222222 222221110000 11 234567889999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|+++-+|||||||+++|||.-+..+..++.++ +.|++||||.++.+.+++++++++++|+|.+.+..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~ 214 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccH
Confidence 99999999999999999999999888776544 68999999999999999999999999999976543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=344.40 Aligned_cols=187 Identities=24% Similarity=0.306 Sum_probs=160.0
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------eeEEeeccchhcccCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------LRFARYHQHLHELLDLD 480 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~~ 480 (629)
+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|... +...
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~~ 120 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMPH 120 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCCC
Confidence 799999999999999999999999999999999999999999998763 24889998753 4456
Q ss_pred CCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 481 ISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555 (629)
Q Consensus 481 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~ 555 (629)
.|+.+++... ++.....+++.++++.+||.... ++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 7888776432 12222345678899999997654 55779999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 556 IDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 556 ~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 200 r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence 99999998764 568999999999999999999999999997 467776654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=324.80 Aligned_cols=210 Identities=22% Similarity=0.340 Sum_probs=155.5
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|++++|++ +++|+++||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +........
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~--~~~~~~~~~-- 77 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS--LSKLSSNER-- 77 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--hhhcCHhHH--
Confidence 789999999974 579999999999999999999999999999999999999999998875422 111000000
Q ss_pred hhhchHHH-HHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 164 VMEVDEER-VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+ ..+..+.+... +.+..+..++.................++.++++.+|+. +..++++.+|||||||||+
T Consensus 78 ----~~~~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 78 ----AKLRNKKLGFIYQFHH-LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVA 151 (221)
T ss_pred ----HHHHHhcEEEEecccc-cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHH
Confidence 0000 00111111111 111122222222211111222233456788999999996 5678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||++++|++|+++
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999999988653 6799999999999965 8999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=334.32 Aligned_cols=217 Identities=22% Similarity=0.305 Sum_probs=162.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~----- 75 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP--ITKENIRE----- 75 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--CCcCCHHH-----
Confidence 489999999996 4569999999999999999999999999999999999999999999875432 11100000
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+..+..+.+... ...+. +..++.........+......+++.++++.+|+. +..++.+.+||||||||++||
T Consensus 76 ----~~~~i~~v~q~~~~~~~~~-tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 76 ----VRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred ----HHhheEEEecCcccccccc-cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 0000111111100 01111 2222222111111233334456788999999996 567899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|++++.+ +.+++
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g-~~~~~ 225 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG-TVEEI 225 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEEC-CHHHH
Confidence 9999999999999999999999999999988653 689999999999999999999999999998765 44443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=333.55 Aligned_cols=218 Identities=20% Similarity=0.293 Sum_probs=160.9
Q ss_pred eEEEEeEEEEeCC---------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC
Q psy10512 87 DVKIANFSITFHG---------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~~---------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~ 157 (629)
+|+++||+++|++ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+... ....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~--~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL--HFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC--CCCc
Confidence 5999999999962 4699999999999999999999999999999999999999999998764321 1100
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
.... +..+..+.++.. .+.+..+...+........ ........+.+.++++.+|+.....++++.+|||
T Consensus 82 ~~~~---------~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 152 (267)
T PRK15112 82 YSYR---------SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAP 152 (267)
T ss_pred hhhH---------hccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCH
Confidence 0000 000000000000 0011111111111111111 1222334457889999999954567888999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~- 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER- 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec-
Confidence 9999999999999999999999999999999999999988764 67999999999999999999999999999865
Q ss_pred CcHHH
Q psy10512 312 GNYEA 316 (629)
Q Consensus 312 g~~~~ 316 (629)
++.+.
T Consensus 232 ~~~~~ 236 (267)
T PRK15112 232 GSTAD 236 (267)
T ss_pred CCHHH
Confidence 44443
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=329.50 Aligned_cols=204 Identities=26% Similarity=0.329 Sum_probs=171.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
..+|+++||+++|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 347999999999963 34899999999999999999999999999999999999999999998763 14
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC-C--------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF-P--------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
++|++|... +....++.+++.... + .......+.++++.+|+... .++++.+|||||+|||+|||||+
T Consensus 83 i~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 83 IGLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-ADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred eEEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCChHHHHHHHHHHHHh
Confidence 788888753 334567777664321 1 11233467889999999754 35678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
.+|++|||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|++.++.
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV 232 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999998765 458999999999999999999999999997 468776654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=333.52 Aligned_cols=218 Identities=21% Similarity=0.269 Sum_probs=162.5
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|..|++.+.+............
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~----- 75 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE----- 75 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH-----
Confidence 378999999997 46799999999999999999999999999999999999999999988765322110000000
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+..+..+.+... ...+.+..+++ ................++.++++.+|+. ++.++++.+|||||+||++||
T Consensus 76 ----~~~~i~~v~q~~~~~~~~~tv~e~i-~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 76 ----VRKTVGIVFQNPDDQLFAPTVEEDV-AFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred ----HHhheEEEeeChhhhhccccHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 0000111111100 01111222222 1111111122334456788999999996 578899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++.+. .+.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~-~~~ 223 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT-PKE 223 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC-HHH
Confidence 9999999999999999999999999999988765 6799999999999999999999999999997754 443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=326.33 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=169.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 463 (629)
++|+++||++.|++ . .+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~~-~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSFGQ-V-EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEECC-e-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 36899999999964 3 489999999999999999999999999999999999984 7999998763
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhcC-------CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQSF-------PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... +....|+.+++.... ......+.+.++++.+|+.. ...+.++.+|||||||||+|
T Consensus 80 ~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 80 LRRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HhccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 24788888753 344567877764211 11122356788999999853 12356789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 99999999999999999999999999999999876 468999999999999999999999999996 468776653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=318.81 Aligned_cols=191 Identities=27% Similarity=0.389 Sum_probs=161.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++|++++|++ . . .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~l~~~~~~--~-~-~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGE--Q-P-MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCC--E-e-cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe
Confidence 468999999953 2 2 3999999999999999999999999999999999999999998773 2478998
Q ss_pred cchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|... +....++.+++..... .....+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 77 q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 77 QENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-KRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred cccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 3445688887643221 112345678899999997544 4577999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999999999999765 4689999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=331.12 Aligned_cols=217 Identities=19% Similarity=0.267 Sum_probs=160.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|++|+++||+|+||||||||+++|+|+++| ++|+|.+.+.. +.......
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~- 88 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED--IYEPDVDV- 88 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE--cccccchH-
Confidence 59999999999988899999999999999999999999999999999999875 68888765422 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT---KEMQQKKTKDFSGGWR 238 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqr 238 (629)
...+..+..+.+....+ +. +..++..+..............++.++++.+|+. ....++++.+|||||+
T Consensus 89 ------~~~~~~i~~v~q~~~~~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 89 ------VELRKNVGMVFQKPNPF-PM-SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred ------HHHhhhEEEEecCCccC-cc-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 00000011111111111 11 2222222211111222233345678899999884 2456788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999988765 579999999999999999999999999998775443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=309.38 Aligned_cols=205 Identities=23% Similarity=0.361 Sum_probs=174.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
++|+++||+..|+. ..+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.++|. ..
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 58999999999964 45999999999999999999999999999999999999999999999873 46
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCCh----hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEV----KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
++|++|.. .++..+|+.+++..+.... ......+++.+.|---....+++.++|||||||.++|||||+.+|++
T Consensus 80 i~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 80 IAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred eEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 88999874 3567899999886432111 11122566777775333445678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhcC----ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDFE----GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~~----~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||||.||-|.-.+.|.+.|+++. .||++|.++..++..++||.++|++|+|+ ++|+.++...
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 99999999999999999999887763 38999999999999999999999999997 7898877754
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=334.24 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=159.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCc-chhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK-SALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~-~~~~~~ 164 (629)
+|+++|++++|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +..... ..+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~~--- 75 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID--TGDFSKLQGI--- 75 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE--CCccccHHHH---
Confidence 378999999995 5679999999999999999999999999999999999999999999876432 111000 000
Q ss_pred hhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
+..+..+.+... .+... +..++................+++.++++.+|+. ...++++.+|||||+|||+|
T Consensus 76 ------~~~i~~v~q~~~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 76 ------RKLVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred ------HhheEEEEEChhhhcccc-hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHH
Confidence 000000000000 00111 1122211111111223344556788899999996 56789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+.+|+||||||||++||+.++..+++.|+++ +.|||++|||++++. .||+|++|++|++++.+.+
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999988654 689999999999995 6999999999999876544
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=327.91 Aligned_cols=201 Identities=27% Similarity=0.355 Sum_probs=169.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 679999999953 34899999999999999999999999999999999999999999998773 13788
Q ss_pred eccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
++|... +....++.+++.... ......+.+.++++.+|+... .++++.+|||||+|||+|||||+.+|
T Consensus 80 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 80 VEQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-ADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred ecccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 888753 334567777764321 111223467889999999754 45678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||+|++|++|+++ ..|+.+++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence 999999999999999999999999876 468999999999999999999999999997 568877664
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=327.26 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=167.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+|+||+|.+|+++||+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 10 ~~~l~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYGE-K-QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeCC-e-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 468999999999963 3 489999999999999999999999999999999999985 8999988652
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +.. .++.+++... .......+.+.++++.+|+.. ....+++.+|||||+|||+
T Consensus 88 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 13678887653 222 6777766421 111112345778999999842 2234678999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 241 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIF 241 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999999999876 468999999999999999999999999997 467776653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=330.26 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=165.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEEee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFARY 469 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~~~ 469 (629)
.+|+++||++.|+++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 5 ~~l~~~~l~~~~~~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 5 AGIVVNDVTVTWRNGH-TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred ceEEEEeEEEEecCCc-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 3689999999996333 4899999999999999999999999999999999999999999998873 248888
Q ss_pred ccchhcccCCCCCHHHHHhhc---------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQS---------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+|+.........++.+++... .+.....+.+.++++.+|+.... ++++.+|||||+|||+|||||+.+|+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-HRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 887532111222333332110 01112345677889999997544 56789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||+++++ +|+++ ..|+.+++
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhc
Confidence 99999999999999999999999876 468999999999999999999877 89987 46777664
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=329.97 Aligned_cols=222 Identities=19% Similarity=0.244 Sum_probs=160.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc---CCCCCcchhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE---MPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~---~~~~~~~~~~~ 163 (629)
+|+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.... +..........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 599999999999888999999999999999999999999999999999999999999987543200 11000000000
Q ss_pred hhhchHHHHHHHHHHHHHh--ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLV--ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+..+..+.++.. ........+++.................++.++++.+|+.....++.+.+|||||||||
T Consensus 86 -----~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 86 -----LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred -----HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 00000000111100 00001111121111101111112234567888999999964467889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+|||||+.+|+||||||||++||+.+..++++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999987643 67999999999999999999999999999876543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=329.03 Aligned_cols=216 Identities=25% Similarity=0.311 Sum_probs=161.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +......
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~--~~~~~~~------- 72 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP--LADWSPA------- 72 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE--cccCCHH-------
Confidence 4899999999998899999999999999999999999999999999999999999999875432 1100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+.....+.. +..++.................++.++++.+|+. +..++.+.+|||||||||+||||
T Consensus 73 --~~~~~i~~~~q~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 73 --ELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred --HhhhheEEEccCCcCCCCC-CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHH
Confidence 0000111111111111112 2222222111111111223345678899999996 56789999999999999999999
Q ss_pred Hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 247 LY------VKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 247 L~------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|+ .+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.. ++.++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 227 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD-GTPAE 227 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee-CCHHH
Confidence 99 599999999999999999999999888654 57999999999999999999999999999865 44443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=330.23 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=169.3
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.++|+++|+++.|+++...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 4689999999999632334899999999999999999999999999999999999999999998762 23
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.... .....|+.+++... +........+.++++.+|+.... ++++.+|||||+|||+|||||+.+|+
T Consensus 85 i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-DKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7888887531 22346777776431 11112234578899999997544 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||||+|||+.++..+.++|.++ +.|||++|||++++. +||++++|++|+++ ..|+.+++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999999999875 268999999999996 79999999999997 45776654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=329.72 Aligned_cols=215 Identities=20% Similarity=0.299 Sum_probs=160.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|+++.|+++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.. +........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~~----- 77 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH--IEGLPGHQI----- 77 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE--CCCCCHHHH-----
Confidence 5999999999998899999999999999999999999999999999999999999999876432 111000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh---------hhhc---cC--hhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD---------RLDD---IS--ADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~---~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
.+..+....++...++..+..+++..... .+.. .. .......+.++++.+|+. +..++++.+
T Consensus 78 ---~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~ 153 (255)
T PRK11300 78 ---ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGN 153 (255)
T ss_pred ---HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhh
Confidence 00000001111111111122222211000 0000 00 112335678889999996 568899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999988653 679999999999999999999999999998
Q ss_pred EEcC
Q psy10512 309 YYGG 312 (629)
Q Consensus 309 ~~~g 312 (629)
+.+.
T Consensus 234 ~~~~ 237 (255)
T PRK11300 234 ANGT 237 (255)
T ss_pred ecCC
Confidence 7644
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=331.29 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=160.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+... ......
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~--~~~~~~------- 81 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL--ESWSSK------- 81 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh--hhCCHH-------
Confidence 59999999999988999999999999999999999999999999999999999999998754321 100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhh-hh---ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDR-LD---DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..+..+..+.+..... +..+..++...... .. .........++..+++.+|+. +..++++.+|||||||||+
T Consensus 82 --~~~~~i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 82 --AFARKVAYLPQQLPAA-EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred --HHhhheEEeccCCCCC-CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHH
Confidence 0000111111111111 11122222221100 00 011122345688899999996 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~ 231 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT 231 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999999999999999999999999999998888654 6899999999999999999999999999986643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=329.17 Aligned_cols=216 Identities=23% Similarity=0.265 Sum_probs=159.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
..|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.. |++|++.+.+.. +.......
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN--IYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE--ccccccCH
Confidence 36999999999998889999999999999999999999999999999999864 467887765432 11100000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
...+..+..+.+....+ +. +..++.......... ......+++.++++.+|+.. ...++++.+||||
T Consensus 83 -------~~~~~~i~~v~q~~~~~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 83 -------VELRRRVGMVFQKPNPF-PK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred -------HHHhhcEEEEecCCCCC-cC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 00000111111111111 12 222222211111111 12234567888999999852 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998865 4799999999999999999999999999987654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=323.81 Aligned_cols=214 Identities=21% Similarity=0.324 Sum_probs=158.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||++.|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.........
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP--MSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--cCcCCHHHHH
Confidence 5999999999974 579999999999999999999999999999999999999999998875432 1111000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.. .+..+..+.+....+ +..+..++......+..........++.++++.+|+. +..++.+.+|||||||||+
T Consensus 83 ~~-----~~~~i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~ 155 (233)
T PRK11629 83 EL-----RNQKLGFIYQFHHLL-PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVA 155 (233)
T ss_pred HH-----HhccEEEEecCcccC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHH
Confidence 00 000000111111111 1112222222211111223334456788999999996 5678889999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+ |++++|++|+++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~ 226 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEE
Confidence 999999999999999999999999999999988754 57999999999999875 69999999999864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=325.87 Aligned_cols=204 Identities=23% Similarity=0.237 Sum_probs=168.1
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 463 (629)
++|+++||++.|+. . .+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~-~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYYGS-N-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEeCC-e-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 47999999999963 3 489999999999999999999999999999999999997 4999988753
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC-------CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF-------PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +....++.+++.... +.....+.+.++++.+|+.. .....++.+|||||||||
T Consensus 81 ~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 81 IEVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred HHHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 13678887743 334567777664211 11122345778899999842 123457799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999999999876 368999999999999999999999999997 467776653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=329.83 Aligned_cols=213 Identities=22% Similarity=0.273 Sum_probs=160.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|+.|++.+.+.. +......
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~--~~~~~~~------- 77 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH--IQHYASK------- 77 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE--hhhCCHH-------
Confidence 5999999999999899999999999999999999999999999999999999999998775421 1110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hh---hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RL---DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l---~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..+..+....++...+.. .+..++..... .. ..........++.++++.+|+. +..++++.+||||||||++
T Consensus 78 --~~~~~i~~v~q~~~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 78 --EVARRIGLLAQNATTPGD-ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred --HHhhheEEeeccCcCCCC-CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHH
Confidence 000011111111111111 12222221110 00 0001122345678899999996 5679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999988654 6799999999999999999999999999987654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=330.63 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=169.4
Q ss_pred CeEEEEEEEEEEcCC----CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------
Q psy10512 398 PVIMVQNVSFRYSDD----GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------- 463 (629)
++|+++|++++|+.. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 579999999999632 234999999999999999999999999999999999999999999998762
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|.+...+. ..++.+++... .+.....+.+.++++.+||.... ++++.+|||||+|||+|||||+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-RHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHHH
Confidence 136788887532222 24566554321 11112345678899999997544 5578999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.. ||++++|++|+++ ..|+++++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence 999999999999999999999999999865 4689999999999976 9999999999997 4688777643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=329.01 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=160.5
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
..|+++|+++.|++..+|+|+||+|++|++++|+||||||||||+++|+|++. |+.|++.+.+.. +.......
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~--~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN--ILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE--ccccccch
Confidence 35999999999998889999999999999999999999999999999999986 467888765432 11000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh-hccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL-DDISADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
...+..+..+.++...+ +.+..+++ ...... ..........++.++++.+|+.. ...++.+.+||||
T Consensus 90 -------~~~~~~i~~~~q~~~~~-~~tv~~nl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 90 -------ALLRAKVGMVFQKPTPF-PMSIYDNI-AFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred -------HHHhcceEEEecCCccC-cCcHHHHH-hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence 00000011111111111 11222222 211111 11223334567888999999842 3567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|+|||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+..
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998776 47999999999999999999999999999987644
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=344.39 Aligned_cols=218 Identities=24% Similarity=0.337 Sum_probs=161.3
Q ss_pred eEEEEeEEEEeCCee------------------------eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 87 DVKIANFSITFHGCE------------------------LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 87 ~i~i~nls~~y~~~~------------------------~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
.|+++||++.||..+ +|+|+||+|++||+++|+|||||||||||++|+|++.|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 477777777776543 89999999999999999999999999999999999999999
Q ss_pred ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC
Q psy10512 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222 (629)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 222 (629)
+|.+.+.. +.......+.. ..+..+.++.++...++..+ ..++..+...+..+......+++.++++.+||.
T Consensus 84 ~I~i~G~~--i~~~~~~~l~~-----~~~~~igyv~Q~~~l~~~~T-v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~ 155 (400)
T PRK10070 84 QVLIDGVD--IAKISDAELRE-----VRRKKIAMVFQSFALMPHMT-VLDNTAFGMELAGINAEERREKALDALRQVGLE 155 (400)
T ss_pred EEEECCEE--CCcCCHHHHHH-----HHhCCEEEEECCCcCCCCCC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 99875432 11110000000 00000111111111122222 233222222222233344456788999999997
Q ss_pred chhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcce
Q psy10512 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 223 ~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ 298 (629)
+..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.++ ++|||+||||++++..+||+
T Consensus 156 -~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 156 -NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred -hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE
Confidence 5678999999999999999999999999999999999999999999999988653 67999999999999999999
Q ss_pred eEEEcCCeEEEEcCc
Q psy10512 299 IIHLDKRKLKYYGGN 313 (629)
Q Consensus 299 ii~l~~G~i~~~~g~ 313 (629)
|++|++|+++..+.+
T Consensus 235 i~vL~~G~i~~~g~~ 249 (400)
T PRK10070 235 IAIMQNGEVVQVGTP 249 (400)
T ss_pred EEEEECCEEEecCCH
Confidence 999999999876543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=320.73 Aligned_cols=198 Identities=28% Similarity=0.390 Sum_probs=166.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------eeEEeeccc
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------LRFARYHQH 472 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~~~~~~q~ 472 (629)
|+++|+++.|+. . .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 l~l~~v~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK-Q-TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC-E-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC
Confidence 478999999963 3 4899999999999999999999999999999999999999999998764 247788876
Q ss_pred hhcccCCCCCHHHHHhhc--CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 473 LHELLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
.. +....++.+++... ... .....+.++++.+|+.... ++++.+|||||+|||+||||++.+|++|||||||+|
T Consensus 79 ~~--~~~~~t~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 79 PP--LYENLTARENLKVHTTLLG-LPDSRIDEVLNIVDLTNTG-KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred CC--ccccCCHHHHHHHHHHHcC-CCHHHHHHHHHHcCCcHHH-hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 43 33456777765421 111 1345678899999997544 457799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 551 LDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 551 LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||+.+++.+.+.|.++ +.+||++|||.+++..+||++++|++|+++. .|++.+
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 210 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKINK 210 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecChhh
Confidence 9999999999999876 4589999999999999999999999999974 566543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=325.39 Aligned_cols=204 Identities=22% Similarity=0.260 Sum_probs=168.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTD-F-KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCC-c-eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 458999999999963 3 489999999999999999999999999999999999997 4899988652
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC-----CC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF-----PE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|+... + ..++.+++.... .. ....+.+..+++.+++.. ...++++.+|||||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 83 ILELRRKIGMVFQTPNP-F--LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHHHhhceEEEeecccc-c--cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH
Confidence 137788887532 2 367887664321 11 122456778888888731 223457799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+..++.
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 237 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELF 237 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999999999887 368999999999999999999999999997 467776654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=323.76 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=156.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +...+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~--~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP--LHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE--cccCCHHHHH
Confidence 5999999999975 369999999999999999999999999999999999999999998775432 1110000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
. ..+..+..+.+....+...+..+++. ..............+++.++++.+|+. +..++++.+||||||||++
T Consensus 84 ~-----~~~~~i~~~~q~~~l~~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 84 K-----LRAKHVGFVFQSFMLIPTLNALENVE-LPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred H-----HHhheEEEEEcccccCCCcCHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHH
Confidence 0 00000111111111111112222221 111111222234456788999999996 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++. .||++++|++|++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 999999999999999999999999999999988653 679999999999986 599999999999874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=328.30 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=159.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+..| ++|+|.+.+.. +.......
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~--~~~~~~~~- 80 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED--LYGPGVDP- 80 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe--ccccccCh-
Confidence 58999999999988999999999999999999999999999999999999874 57888775432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....++..+..+++ ........ .......+++.++++.+|+. .+..++++.+|||||
T Consensus 81 ------~~~~~~i~~~~q~~~~~~~~tv~~nl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 ------VAVRRTIGMVFQRPNPFPTMSIRDNV-VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred ------HHHhcceEEEccccccCCCCcHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 00000011111111111112222222 21111111 12233456788899999984 245678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEc------CCeEEE
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLD------KRKLKY 309 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~------~G~i~~ 309 (629)
||||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999988765 5799999999999999999999996 799987
Q ss_pred EcCc
Q psy10512 310 YGGN 313 (629)
Q Consensus 310 ~~g~ 313 (629)
.+.+
T Consensus 234 ~~~~ 237 (258)
T PRK14241 234 IDDT 237 (258)
T ss_pred cCCH
Confidence 7544
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=323.23 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=156.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
+.++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+........
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----------- 91 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL----------- 91 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcc-----------
Confidence 778999999999999999999999999999999999999999999999999999998875432110000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..... +..+..++.................++.++++.+|+. +..++++.+||||||||++|||||
T Consensus 92 ------------~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 92 ------------GGGFN-PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------------cccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHH
Confidence 00001 1111222221111111122233345678889999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999988764 57999999999999999999999999998754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=309.73 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=170.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.+.++||.|+|+.+.++++|||+|++||++||+|||||||||.+.++.|+..|++|.|.+...+ +...+..
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~d--iT~lPm~------- 74 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDED--ITKLPMH------- 74 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcc--cccCChH-------
Confidence 4889999999999999999999999999999999999999999999999999999999876432 2221110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChh--hHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD--TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
...+..+.++.|+...+-..+..++++.+.+. ...+.. +.+.++..+|+.|++. +..+.+..+||||||+|+.||
T Consensus 75 -~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 75 -KRARLGIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred -HHhhcCcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHH
Confidence 01111222232222222233334444444332 222222 3344577999999996 688999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEE---LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~---L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|||+.+|+.+|||||++|.||-++..+.++ |++.+..|+|+.|+..+...+|||.++|.+|++.+.|.+.+.+..
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999998766655 555678999999999999999999999999999988777655443
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=327.70 Aligned_cols=213 Identities=24% Similarity=0.307 Sum_probs=160.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|+++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +......
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~--~~~~~~~-------- 71 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVD--LHGLSRR-------- 71 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEE--cccCCHH--------
Confidence 789999999999999999999999999999999999999999999999999999998875432 1110000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhh---hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDR---LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
..+..+..+.++.......+..+++...... +..........++.++++.+|+. +..++++.+|||||+|||+||
T Consensus 72 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 72 -ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred -HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 0000111111111111111222222111000 00111223345788899999996 678899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++..+.
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 9999999999999999999999999999988765 6799999999999999999999999999987643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=318.89 Aligned_cols=206 Identities=20% Similarity=0.275 Sum_probs=154.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+ |+||+|.+|++++|+||||||||||+++|+|+++|++|++.+.+.. +......
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~--~~~~~~~-------- 68 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD--VTAAPPA-------- 68 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--cCcCCHh--------
Confidence 468999999987653 9999999999999999999999999999999999999998775432 1110000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
+..+..+.+....++..+..+++ ..............+.++.++++.+|+. +..++++.+||||||||++|||||
T Consensus 69 ---~~~i~~~~q~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 69 ---DRPVSMLFQENNLFAHLTVEQNV-GLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVL 143 (211)
T ss_pred ---HccEEEEecccccCCCCcHHHHH-hcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHH
Confidence 00000111111111111222222 1111100000123355788999999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999999999999999999988754 67999999999999999999999999998753
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=342.14 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=161.1
Q ss_pred EEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHH
Q psy10512 95 ITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL 174 (629)
Q Consensus 95 ~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (629)
|.|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+.+.. +...+...+. ...+..+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~--i~~~~~~~~~-----~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGEN--IMKQSPVELR-----EVRRKKI 73 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEE--CCcCCHHHHH-----HHHhCcE
Confidence 46888899999999999999999999999999999999999999999999876532 2111100000 0001111
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEE
Q psy10512 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254 (629)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iL 254 (629)
.+++++...++..+..+++ .+...+..+...+..+++.++|+.+||. .+.++++.+|||||||||+|||||+.+|+||
T Consensus 74 ~~v~Q~~~l~~~~TV~eNi-~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 74 GMVFQQFALFPHMTILQNT-SLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred EEEECCCcCCCCCCHHHHH-HHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222222222222333333 2222222334445667899999999996 5789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 255 LLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||||||++||+.++.++.+.|.++ ++|||+||||++++..+||+|++|++|+++..+.+.+
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999987643 6899999999999999999999999999998765443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=325.11 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=168.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
..+|+++|+++.|++ . .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~~~~l~~~~~~-~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-F-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC-e-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 457999999999963 3 48999999999999999999999999999999999986 58999988762
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +. ..++.+++... .......+++.++++.+++.. ....+++.+|||||+|||
T Consensus 89 ~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 89 IALLRAKVGMVFQKPT--PF-PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred hHHHhcceEEEecCCc--cC-cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 24778888753 22 25777765421 111122356788999999842 223456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||++||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 3589999999999999999999999999974 67776654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=339.74 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=162.1
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------eeEEeeccchhcccCC
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------LRFARYHQHLHELLDL 479 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~ 479 (629)
.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|. ..++|++|... +..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--l~~ 84 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--LFP 84 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc--CCC
Confidence 4899999999999999999999999999999999999999999998772 35889998753 455
Q ss_pred CCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 480 DISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 480 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~ 554 (629)
..|+.+++... .......+++.++++.+||... .++++.+|||||||||+|||||+.+|+||||||||++||+.
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 67888876432 1122234678899999999764 45677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 555 TIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 555 ~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~~ 219 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEILR 219 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHHh
Confidence 999999998754 579999999999999999999999999997 4687776543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=325.88 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=162.4
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCCceEEEeecccCCCCCcchhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV---PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~---p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+.|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+|.+.+. ++......
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~--~i~~~~~~--- 75 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGK--DVKNQDVV--- 75 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCE--ecccCCHH---
Confidence 35899999999998899999999999999999999999999999999999974 57888876543 22111000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
..+..+..+.++...+ +.+..++ .......... .......++.++++.+|+.. +..++.+.+|||||
T Consensus 76 ------~~~~~i~~~~q~~~l~-~~tv~en-i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 147 (246)
T PRK14269 76 ------ALRKNVGMVFQQPNVF-VKSIYEN-ISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ 147 (246)
T ss_pred ------HHhhhEEEEecCCccc-cccHHHH-hhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence 0011111111111111 1222222 2211111111 11234456788999999953 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.+.+
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 6899999999999999999999999999998766554
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 228 ~ 228 (246)
T PRK14269 228 F 228 (246)
T ss_pred H
Confidence 3
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=326.20 Aligned_cols=205 Identities=20% Similarity=0.250 Sum_probs=168.3
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc-------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~------- 463 (629)
..++|+++||++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3458999999999963 3489999999999999999999999999999999999975 8999998762
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhcC-------CChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQSF-------PEVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKC 527 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkq 527 (629)
..++|++|... +.. .++.+++.... ......+.+.++++.+|+... ...+++.+|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 23678888753 222 37777664211 111224557889999999531 234567999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999999999999999999876 368999999999999999999999999997 46776665
Q ss_pred H
Q psy10512 606 K 606 (629)
Q Consensus 606 ~ 606 (629)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 3
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=331.14 Aligned_cols=216 Identities=24% Similarity=0.308 Sum_probs=160.3
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhch
Q psy10512 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168 (629)
Q Consensus 89 ~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 168 (629)
.++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +...+...+...
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~--~~~~~~~~~~~~---- 99 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQD--IAAMSRKELREL---- 99 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE--ccccChhhhhhh----
Confidence 56799999999999999999999999999999999999999999999999999998875432 111000000000
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
.+..+..+.+....++.. +..++.................++.++++.+|+. +..++++.+|||||||||+|||||+
T Consensus 100 -~~~~i~~v~q~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 100 -RRKKISMVFQSFALLPHR-TVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred -hcCcEEEEecCcccCCCC-cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHh
Confidence 000000011111111111 2222222211111222333456788899999996 5678999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..+..
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 245 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTP 245 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999988654 57999999999999999999999999999876543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=330.40 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=158.4
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
.+|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.. |++|++.+.+.. +.......
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--ILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE--cccccccH
Confidence 35999999999998889999999999999999999999999999999999864 578888765432 11000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
...+..+.++.++...+ +.+..+++ ......... ........+.++++.+++.. ...++++.+||||
T Consensus 98 -------~~~~~~i~~v~q~~~~~-~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 98 -------VNLRREIGMVFQKPNPF-PKSIYNNI-THALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred -------HHHhccEEEEecCCccC-cccHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 00000011111111111 11222222 111111111 11223455777888888842 3567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||++|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|++++++..
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999876 47999999999999999999999999999987544
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=326.37 Aligned_cols=204 Identities=21% Similarity=0.252 Sum_probs=166.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 19 ~~~l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 19 EHILEVKDLSIYYGE-K-RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CceEEEEEEEEEeCC-c-eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 468999999999963 3 48999999999999999999999999999999999865 79999988752
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC--CC----hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF--PE----VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +.. .++.+++.... .. ....+.+..++..+++.. ....+++.+|||||+|||
T Consensus 97 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 24778888753 222 37777654221 11 112345677888888842 123457899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|+.+++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999999999877 468999999999999999999999999997 467766653
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=293.64 Aligned_cols=194 Identities=29% Similarity=0.398 Sum_probs=165.9
Q ss_pred eEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++++++..+.. ...||++|+|.|++||.++||||+||||||||-+++|+..|++|+|++.|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 78999999887542 235899999999999999999999999999999999999999999998663
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..+++++|.+. +.++++.++++.... ........++.+|+++||..... +++.+|||||||||+||||++
T Consensus 86 R~~~vGfVFQSF~--Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSFH--LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEeee--ccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-cCccccCchHHHHHHHHHHhc
Confidence 35899999864 456778887764211 12234567899999999987665 466999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
..|+||+.||||.+||.++-+.+.+++-.+ +.|+|+||||..++.+ |+|++.|..|+++
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 999999999999999999999999988554 5689999999999966 9999999999986
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=338.95 Aligned_cols=189 Identities=24% Similarity=0.275 Sum_probs=161.8
Q ss_pred CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------------eeEEeeccchh
Q psy10512 414 PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------------LRFARYHQHLH 474 (629)
Q Consensus 414 ~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------------~~~~~~~q~~~ 474 (629)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|+..
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999762 24889998763
Q ss_pred cccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 475 ELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
+....|+.+++... .+.....+.+.++++.+||.+.. ++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 117 --l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 117 --LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred --CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 44457888876532 12223345778999999997654 55779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 550 HLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|+++. .|+++++.
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei~ 253 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEIV 253 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999988764 5799999999999999999999999999974 68877664
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=326.96 Aligned_cols=207 Identities=23% Similarity=0.319 Sum_probs=168.8
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
+++|+++|+++.|++....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4689999999999643234899999999999999999999999999999999999999999999873 14
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|..... ....++.+++... .......+.+..+++.+|+.+.. +.++.+|||||+|||+|||||+.+|+
T Consensus 85 i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-DYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78888875312 2334555443221 11112234677899999997544 45779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~~ 231 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIFD 231 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence 99999999999999999999998765 4689999999999975 9999999999997 4687776543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=336.96 Aligned_cols=221 Identities=22% Similarity=0.357 Sum_probs=161.2
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CCceEEEeecccCCCCCcc
Q psy10512 87 DVKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV---PDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~----~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~---~g~i~i~~~~~~~~~~~~~ 159 (629)
.|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|++.|. +|+|.+.+. ++......
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~--~i~~~~~~ 89 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR--EILNLPEK 89 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE--ECCcCCHH
Confidence 699999999995 357999999999999999999999999999999999999885 788776542 22111100
Q ss_pred hhhhhhhchHHH-HHHHHHHHHHh-ccCC-hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc--hhhhcccCCCC
Q psy10512 160 ALTCVMEVDEER-VRLEKLAEQLV-ACED-DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK--EMQQKKTKDFS 234 (629)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LS 234 (629)
.+. ..+ ..+..++++.. .+.+ ....+++.............+...++.++|+.+||.. ...++++.+||
T Consensus 90 ~~~------~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LS 163 (330)
T PRK09473 90 ELN------KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS 163 (330)
T ss_pred HHH------HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCC
Confidence 000 000 00111111110 1111 1122222211111112334455678899999999964 23577899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||+|||+|||||+.+|+|||+||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999887654 68999999999999999999999999999987
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
+...+
T Consensus 244 g~~~~ 248 (330)
T PRK09473 244 GNARD 248 (330)
T ss_pred CCHHH
Confidence 65433
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=324.87 Aligned_cols=212 Identities=18% Similarity=0.216 Sum_probs=157.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~------ 76 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD--ITDWQTAK------ 76 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe--cCCCCHHH------
Confidence 5999999999998889999999999999999999999999999999999999999998875432 11110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC-CCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL-GFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
..+..+..+.+....+ +..+..++....... .........+.++++.+ ++. +..++++.+|||||||||+|||
T Consensus 77 --~~~~~i~~~~q~~~~~-~~~tv~~~l~~~~~~--~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 77 --IMREAVAIVPEGRRVF-SRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred --HHHhCEEEeccCcccC-CCCcHHHHHHHhhhc--cChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHH
Confidence 0000011111111111 111222222211110 11122344566777777 464 4567889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++..+.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 999999999999999999999999999888654 6899999999999999999999999999987653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=326.56 Aligned_cols=223 Identities=23% Similarity=0.348 Sum_probs=162.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---CceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP---DHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~---g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+|+++||++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|++.|++ |++.+.+. .+........
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~--~~~~~~~~~~-- 79 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR--TVQREGRLAR-- 79 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCE--ecccccccch--
Confidence 5999999999999999999999999999999999999999999999999998874 77766542 2111000000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhh---h----hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR---L----DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l----~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 236 (629)
.....+..+..+.+....++..+..+++...... + ..........++.++++.+|+. +..++.+.+||||
T Consensus 80 --~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G 156 (262)
T PRK09984 80 --DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGG 156 (262)
T ss_pred --hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHH
Confidence 0000011111111111111111222222111000 0 0011123456788999999996 5678999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++. |
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~-g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD-G 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-C
Confidence 999999999999999999999999999999999999988764 57999999999999999999999999999765 4
Q ss_pred cHHHH
Q psy10512 313 NYEAF 317 (629)
Q Consensus 313 ~~~~~ 317 (629)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 55544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=330.99 Aligned_cols=212 Identities=20% Similarity=0.290 Sum_probs=160.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++||++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+.+|++|++.+.+.. +.......
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~--i~~~~~~~---- 78 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV--LSEETVWD---- 78 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE--CCcCcHHH----
Confidence 5999999999974 569999999999999999999999999999999999999999999876532 11110000
Q ss_pred hhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
.+..+.++.+... .+...+..+++ ............+...++.++++.+||. ...++++.+|||||||||+|
T Consensus 79 -----~~~~i~~~~q~~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 79 -----VRRQVGMVFQNPDNQFVGATVQDDV-AFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAI 151 (279)
T ss_pred -----HhhheEEEEeCHHHhcccccHHHHH-hhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 0000111111110 11111222222 2111111223334456789999999997 57889999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++. .||+|++|++|++++.+.
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999988754 579999999999997 599999999999987654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=326.15 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=159.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc---CCCCCcchhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE---MPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~---~~~~~~~~~~~ 163 (629)
+|+++|+++.|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.... +..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 599999999999888999999999999999999999999999999999999999999988643200 11000000000
Q ss_pred hhhchHHHHHHHHHHHHHh--ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLV--ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+..+....+... ........+++..................+.++++.+|+.....++.+.+|||||||||
T Consensus 83 -----~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 83 -----LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred -----hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 00000000000000 00000111111110000110111123467889999999964567889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999887653 6899999999999999999999999999987654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=323.08 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=156.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~------- 71 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED--ITKLPPHE------- 71 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE--CCCCCHHH-------
Confidence 578999999998899999999999999999999999999999999999999999999875432 11100000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+..+..+.+....+ +..+..++.......... .....+.++++.+++-....++++.+|||||+||++|||||
T Consensus 72 -~~~~~i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 72 -RARAGIAYVPQGREIF-PRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred -HHHhCeEEeccCCccc-CCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 0000111111111111 121222222211111111 12234566777776323567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999988764 6799999999999999999999999999987643
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=310.54 Aligned_cols=209 Identities=22% Similarity=0.338 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.+++++|+++||++.+++|+||++++|+++|++|||||||||.+|+|.|++.|++|+|.+.+.. +...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~--~~~~---------- 69 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQE---------- 69 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc--hhhh----------
Confidence 5899999999999999999999999999999999999999999999999999999999886422 1111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+++++.++-... +..+..+....+.++.+++..++..++..+|+++++. ....+++.+||-|.+|++.+..+
T Consensus 70 ---~~~rIGyLPEERGLy-~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 70 ---IKNRIGYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred ---hhhhcccChhhhccC-ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHH
Confidence 011122221111122 2233444444567788888889999999999999997 46788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELK---TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~---~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
++++|++||||||+|||||.+.+.|.+.+. +.|.|||++||.|+.+..+||+++.|++|+.+.+|.
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 999999999999999999999999998764 458999999999999999999999999999998764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=354.83 Aligned_cols=205 Identities=25% Similarity=0.391 Sum_probs=175.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++|+++.|++ ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 9 PPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 458999999999963 34899999999999999999999999999999999999999999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcCC-ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSFP-EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
.++|++|... +....++.+++..... .....+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++||
T Consensus 87 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 87 GIYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-DSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred CEEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4789988753 4456788887654322 112346688899999997544 56789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||+|||+.++..+.+.|.++ +.+||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLST 229 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcCH
Confidence 99999999999999999998775 568999999999999999999999999997 5788877643
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=326.40 Aligned_cols=203 Identities=24% Similarity=0.312 Sum_probs=151.2
Q ss_pred EEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHH
Q psy10512 95 ITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL 174 (629)
Q Consensus 95 ~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (629)
+.|+.+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+... ...... .+..+
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~--~~~~~~----------~~~~i 96 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP--WKRRKK----------FLRRI 96 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc--cccchh----------hcccE
Confidence 456667899999999999999999999999999999999999999999998754321 000000 00000
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEE
Q psy10512 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254 (629)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iL 254 (629)
....++.....+..+..++......+..........++..+++.+|+. +..++++.+||||||||++|||||+.+|+||
T Consensus 97 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 175 (236)
T cd03267 97 GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEIL 175 (236)
T ss_pred EEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 000000000111112222222222222223334455678899999996 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 255 LLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++.
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 999999999999999999998765 57999999999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=328.06 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=170.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc---cEEEECCc----------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV---GMVRKNSH---------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~---------- 463 (629)
.++|+++|+++.|++....+|+++||+|.+||+++|+||||||||||+++|+|+++|++ |+|.+++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 35799999999996432348999999999999999999999999999999999999998 89988763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhcC--C---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQSF--P---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|.+.. .....++.+++.... . .....+++.++++.+||.... ++++.+|||||+|||+|||||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-DSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHHHHHHHHHc
Confidence 247888887532 223567887764221 1 112235678899999997644 56779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++. +||++++|++|+++. .|+++++.
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 231 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIF 231 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999998765 468999999999995 799999999999974 67776653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=325.93 Aligned_cols=215 Identities=16% Similarity=0.214 Sum_probs=158.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|++++|++..+|+|+||+|++||+++|+||||||||||+++|+|++.|. +|+|.+.+.. +.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~- 83 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN--IYSNNFDI- 83 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe--cccccccH-
Confidence 699999999999888999999999999999999999999999999999999874 7887765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
...+..+..+.++...+ ..+..+++ ........ ........++.++++.+|+. .+..++++.+|||||
T Consensus 84 ------~~~~~~i~~v~q~~~~~-~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 84 ------LELRRKIGMVFQTPNPF-LMSIYDNI-SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred ------HHHhhceEEEeeccccc-cCcHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 00000011111111111 11222222 21111111 12223456778889998873 235688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..+.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999998776 4799999999999999999999999999987654
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=298.92 Aligned_cols=203 Identities=24% Similarity=0.404 Sum_probs=172.1
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 463 (629)
+.|+++|+.++|+. ..+|++|||+...|++|.|||.+|||||||||||.=+..|+.|.|.+++.
T Consensus 5 ~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 46899999999964 34899999999999999999999999999999999999999999988762
Q ss_pred ----------eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHH
Q psy10512 464 ----------LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527 (629)
Q Consensus 464 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 527 (629)
.+.+.++|++. +...+|+++++.. +.+.....+++..+|.++|+.+... .++..|||||+|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQ 159 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQ 159 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHH
Confidence 12455666653 3344677776643 2334455678899999999987655 566899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
|++|||||+.+|+++|+|||||+|||+-..+++..++++ +.|+++|||.+.|+..++++|+++++|.|. ..|++++
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~q 238 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQ 238 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHH
Confidence 999999999999999999999999999999998888776 679999999999999999999999999995 5888876
Q ss_pred HH
Q psy10512 605 YK 606 (629)
Q Consensus 605 ~~ 606 (629)
..
T Consensus 239 vf 240 (256)
T COG4598 239 VF 240 (256)
T ss_pred Hh
Confidence 53
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=327.06 Aligned_cols=216 Identities=22% Similarity=0.273 Sum_probs=160.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++| +.|+|.+.+.. +.......
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~--i~~~~~~~- 95 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED--IYDPRLDV- 95 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE--Ccccccch-
Confidence 69999999999988999999999999999999999999999999999999874 78888765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
...+..+..+.+....+ +. +..++..+....... .......++.++++.+|+.. ...++++.+||||
T Consensus 96 ------~~~~~~i~~v~q~~~~~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 96 ------VELRARVGMVFQKPNPF-PK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred ------HHHhhceEEEecCCCCC-CC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 00000111111111111 12 222222221111111 12234566788999999953 2457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+..
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998765 47999999999999999999999999999877543
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=319.98 Aligned_cols=211 Identities=26% Similarity=0.360 Sum_probs=160.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|..|++.+.+.. +......
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~--~~~~~~~-------- 70 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD--ITNLPPH-------- 70 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--cCcCChh--------
Confidence 468999999998899999999999999999999999999999999999999999998875432 1110000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
+..+....+....+...+..+++ ................++..+++.+|+. +..++.+.+|||||+|||+|||||
T Consensus 71 ---~~~i~~~~q~~~~~~~~t~~~nl-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 71 ---KRPVNTVFQNYALFPHLTVFENI-AFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred ---hcceEEEecccccCCCCcHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 00000001111111111222222 1111111122333456778899999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+.+|++|||||||++||+.++.++.+.|.++ +.|||++||+++++..+||++++|++|++...+..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~ 215 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999988654 67999999999999999999999999999877644
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=325.10 Aligned_cols=217 Identities=23% Similarity=0.301 Sum_probs=160.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++||+++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++|. +|+|.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~~- 80 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN--IYSPDVDP- 80 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE--ccccccCh-
Confidence 589999999999888999999999999999999999999999999999999874 7888775432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
...+..+..+.++...++..+..+++ ......... .......++.++++.+|+.. ...++++.+||||
T Consensus 81 ------~~~~~~i~~~~q~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 ------IEVRREVGMVFQYPNPFPHLTIYDNV-AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGG 153 (253)
T ss_pred ------HHHhhceeEEecCCccCCCCcHHHHH-HHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHH
Confidence 00000111111111111111222222 211111111 22234456788999999842 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998765 47999999999999999999999999999977543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=317.83 Aligned_cols=193 Identities=27% Similarity=0.409 Sum_probs=159.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+.....+|+|+||+|.+|++++|+||||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999643234899999999999999999999999999999999999999999998873 24788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc----------CcCcCChhHHHHHHHHHHHccC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC----------PIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 538 (629)
++|... .+ ..++.+++...... .....+.++++.+++.+..... ++.+|||||||||+||||++.+
T Consensus 83 ~~q~~~-~~--~~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDVT-LF--YGTLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCCc-cc--cchHHHHhhcCCCC-CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 888753 22 24777776432221 2344567788888886433221 2469999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|++|||||||+|||+.++..+.+.|.++. .|||+||||++++ .+||++++|++|+++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 99999999999999999999999998873 5899999999987 6999999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=325.42 Aligned_cols=219 Identities=19% Similarity=0.299 Sum_probs=159.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV--P---VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p---~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|++. | ++|++.+.+. .+........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~--~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT--DIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE--EcccccCChH
Confidence 4899999999998889999999999999999999999999999999999985 3 4688776543 2211000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGWR 238 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqr 238 (629)
..+..+..+.++...+...+..+++...+.............++.++++.+|+.. +..++.+.+|||||+
T Consensus 82 -------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 82 -------SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154 (252)
T ss_pred -------HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHH
Confidence 0000000111111111111222222111111111122334456788999999853 345678999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+...
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998776 579999999999999999999999999999876543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=315.14 Aligned_cols=191 Identities=25% Similarity=0.395 Sum_probs=162.2
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
++++||++.|+. ++.++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 468999999952 468999999999999999999999999999999999999999998764 2478888
Q ss_pred cchhcccCCCCCHHHHHhhcC-C----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSF-P----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|... +....++.+++.... . ......++.++++.+|+.... ++++.+|||||+|||+|||||+.+|++||||
T Consensus 77 q~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 77 QENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-DRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred ccCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 344568877764321 1 112345678899999997543 5677999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||++||+.++..+.+.|.++ +.|||+||||.+++..+||++++|++|+++.
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999998765 4689999999999999999999999999974
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=324.99 Aligned_cols=214 Identities=23% Similarity=0.295 Sum_probs=159.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|++.| ++|+|.+.+.. +......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~-- 78 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD--IFKMDVI-- 78 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE--CCcCCHH--
Confidence 48999999999988999999999999999999999999999999999999874 57877765432 1110000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
..+..+..+.+....++. .+..++..+....... ......+.+.++++.+|+.. ...++++.+||||
T Consensus 79 -------~~~~~i~~v~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 150 (250)
T PRK14247 79 -------ELRRRVQMVFQIPNPIPN-LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGG 150 (250)
T ss_pred -------HHhccEEEEeccCccCCC-CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHH
Confidence 000011111111111111 2222222211111111 22334567888999999853 3468889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|+|+||||++++..+||++++|++|+++..+.
T Consensus 151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECC
Confidence 999999999999999999999999999999999999998765 5799999999999999999999999999987654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=323.27 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=167.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 463 (629)
+|+++|++++|++ . .+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 4 ~l~i~~v~~~~~~-~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS-F-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC-E-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 6899999999963 3 489999999999999999999999999999999999974 7999998763
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... +....++.+++.... ......+.+.++++.+|+.. ....+++.+|||||+|||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 82 AVRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred HHhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 13778887643 334567777664211 11122346778899999842 23346789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEe------CCEEEEecCCHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICE------NGKVTKWEGNIL 603 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~ 603 (629)
||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|+ +|+|+ +.|+.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~ 238 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTE 238 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHH
Confidence 99999999999999999999999999999999876 4689999999999999999999997 79997 468776
Q ss_pred HHH
Q psy10512 604 DYK 606 (629)
Q Consensus 604 ~~~ 606 (629)
++.
T Consensus 239 ~~~ 241 (258)
T PRK14241 239 KIF 241 (258)
T ss_pred HHH
Confidence 653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=330.81 Aligned_cols=214 Identities=22% Similarity=0.279 Sum_probs=160.1
Q ss_pred eEEEEeEEEEeCC------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcch
Q psy10512 87 DVKIANFSITFHG------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 87 ~i~i~nls~~y~~------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
+|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++.|+.|+|.+.+... ..... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i--~~~~~-~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT--SDEEN-L 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec--ccccc-H
Confidence 5999999999963 4699999999999999999999999999999999999999999998764321 10000 0
Q ss_pred hhhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
. ..+..+..+.++.. .... .+..+...+..............++.++++.+|+. +..++++.+|||||||
T Consensus 81 ~-------~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~q 151 (280)
T PRK13633 81 W-------DIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQ 151 (280)
T ss_pred H-------HHhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHH
Confidence 0 00000100111100 0001 11122211111111223344456788999999996 6788999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+|||||+.+|+||||||||++||+.++..|.+.|+++ +.|||+||||++++.. ||++++|++|+++..+.+
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999988754 6799999999999986 999999999999876543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=336.44 Aligned_cols=199 Identities=24% Similarity=0.298 Sum_probs=168.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
||++ ||+++|++ . .+ ++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 4778 99999953 2 23 899999999999999999999999999999999999999988652
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
..++|++|... +....++.+++...... ...+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++||
T Consensus 76 ~~i~~v~q~~~--l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 76 RRIGYVFQDAR--LFPHYKVRGNLRYGMAK-SMVAQFDKIVALLGIEPLL-DRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred CCEEEEcCCcc--cCCCCcHHHHHHhhhhh-hhHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 24778888753 44567888887543322 3356788999999997644 55779999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|+++ ..|+++++..
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~ 218 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWA 218 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHh
Confidence 99999999999999999988765 468999999999999999999999999997 4677766543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=362.79 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=173.6
Q ss_pred CCeEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------
Q psy10512 397 PPVIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 463 (629)
+++|+++||++.|+.. ...+|+|+||+|.+||++||+||||||||||+++|+|+++|++|.|.+++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 5689999999999531 234899999999999999999999999999999999999999999987541
Q ss_pred --------------eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCC--cccccCcCcC
Q psy10512 464 --------------LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTG--RQQVCPIRQL 521 (629)
Q Consensus 464 --------------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~~L 521 (629)
..++|++|++...+....++.+++... .......+++.++|+.+||.. ...++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 147899987532344567887776431 112123457888999999963 2345678999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 522 SgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+|+.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 999999999999999999999999999999999999999988764 5689999999999999999999999999974
Q ss_pred ecCCHHHHH
Q psy10512 598 WEGNILDYK 606 (629)
Q Consensus 598 ~~g~~~~~~ 606 (629)
.|++.++.
T Consensus 250 -~g~~~~~~ 257 (623)
T PRK10261 250 -TGSVEQIF 257 (623)
T ss_pred -cCCHHHhh
Confidence 78776653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=323.70 Aligned_cols=217 Identities=19% Similarity=0.270 Sum_probs=158.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC---CCC--CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR---EVP--VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~---~~p--~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+ .+| +.|++.+.+.. +.......
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~- 79 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN--IYDKGVQV- 79 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe--cccccccH-
Confidence 69999999999988899999999999999999999999999999999996 344 36887765432 11100000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.++...+ +.+..+++ ......... ........+.++++.+|+.. ...++++.+|||||
T Consensus 80 ------~~~~~~i~~v~q~~~~~-~~tv~~nl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 80 ------DELRKNVGMVFQRPNPF-PKSIFENV-AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ------HHHhhheEEEecCCccC-cccHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 00000111111111111 11222222 111111111 11224456788999999853 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++++.+.+.
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999765 479999999999999999999999999999876443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=319.31 Aligned_cols=201 Identities=27% Similarity=0.397 Sum_probs=160.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+.....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 4789999999643334899999999999999999999999999999999999999999999873 24788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHH---------HHHHHHc--CCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEM---------RKIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
++|... + +..++.+++...... .....+ .+++..+ ++.... ..++.+|||||||||+|||||+.
T Consensus 81 ~~q~~~--~-~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 81 VLQENV--L-FNRSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTIV-GEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EcCCch--h-ccchHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchh-hcCCCcCCHHHHHHHHHHHHHhh
Confidence 888753 2 235777776432211 111222 2334444 443322 34679999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|++|+++ +.|+.+++..
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 225 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLA 225 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999999876 468999999999996 59999999999997 5677766543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=306.41 Aligned_cols=175 Identities=30% Similarity=0.468 Sum_probs=145.4
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhch
Q psy10512 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168 (629)
Q Consensus 89 ~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 168 (629)
+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|+.|++.+.+.. +..... .
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~~~~---------~ 69 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASLSP---------K 69 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCcCCH---------H
Confidence 46899999998889999999999999999999999999999999999999999998875321 110000 0
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
..+..+.. +.++++.+|+. +..++.+.+|||||+||++|||||+
T Consensus 70 ~~~~~i~~-----------------------------------~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~ 113 (180)
T cd03214 70 ELARKIAY-----------------------------------VPQALELLGLA-HLADRPFNELSGGERQRVLLARALA 113 (180)
T ss_pred HHHHHHhH-----------------------------------HHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHh
Confidence 00000000 00177888986 5568889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
.+|++|||||||++||+.++.++.+.|.++ +.|+|+|||+++++..+||++++|++|+++..
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999988765 57999999999999999999999999998753
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=323.82 Aligned_cols=217 Identities=21% Similarity=0.314 Sum_probs=159.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+..| ++|++.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--~~~~~~~~- 79 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD--IYKSDIDV- 79 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--ccccccch-
Confidence 48999999999988899999999999999999999999999999999998763 56877765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +.+..+++ ......... ......+++.++++.+++.. +..++++.+|||||
T Consensus 80 ------~~~~~~i~~~~q~~~~~-~~t~~~ni-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 80 ------NQLRKRVGMVFQQPNPF-PMSIYDNV-AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred ------HHHhccEEEEecCCccC-cccHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHH
Confidence 00000011111111111 11222222 211111111 12234567788889988742 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
+|||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+...
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999988765 579999999999999999999999999999876543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=355.78 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=172.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999999963 34899999999999999999999999999999999999999999998762 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC------CC------hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF------PE------VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
.++|++|+.. +....++.+++.... .. ....+++.++++.+|+... .++++.+|||||||||+||
T Consensus 81 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 81 GIGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-LDEKVANLSISHKQMLEIA 157 (510)
T ss_pred CeEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHHHH
Confidence 4788888753 344567777764321 01 1123567889999999754 4568899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 9999999999999999999999999999998775 468999999999999999999999999996 57877665
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=325.27 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=169.6
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
++|+++||++.|+.. ...+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999632 234899999999999999999999999999999999999999999998763 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|.... .....++.+++... .......+.+..+++.+|+... ..+++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 83 IGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-KTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred eEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7888887532 22345777766421 1111223457889999999754 456789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999998765 568999999999997 59999999999997 467776654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=325.35 Aligned_cols=205 Identities=21% Similarity=0.246 Sum_probs=167.9
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc-------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~------- 463 (629)
+.++|+++||++.|+. . .+|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-F-EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC-E-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 5678999999999963 3 48999999999999999999999999999999999864 49999988762
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhc-----CCC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQS-----FPE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqr 528 (629)
..++|++|+.. +.. .++.+++... ... ....+.+.++++.+|+.. ....+++.+|||||+||
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred chHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 14778888753 222 3787776431 111 112345677888888742 22345779999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.+||+||||++++..+||++++|++|+++ ..|+..++.
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~ 269 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLF 269 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999999999887 358999999999999999999999999997 467776653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=336.36 Aligned_cols=221 Identities=19% Similarity=0.228 Sum_probs=158.4
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCCceEEEeecccCCCCCc
Q psy10512 87 DVKIANFSITF----HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV----PVPDHIDIFHLTREMPASDK 158 (629)
Q Consensus 87 ~i~i~nls~~y----~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~----p~~g~i~i~~~~~~~~~~~~ 158 (629)
+|+++||+++| +...+|+||||+|.+||++||+|+||||||||+++|+|++. |+.|+|.+.+. ++.....
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~--~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI--DLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE--ECCcCCH
Confidence 58999999999 44679999999999999999999999999999999999986 46777766432 2211110
Q ss_pred chhhhhhhchHHHHHHHHHHHHHh-ccCC-hhHHHHHHHHHhhh--hc---cChhhHHHHHHHHHHhCCCCc--hhhhcc
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLV-ACED-DESQEQLMDIYDRL--DD---ISADTAEARAANILHGLGFTK--EMQQKK 229 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l--~~---~~~~~~~~~~~~~L~~lgl~~--~~~~~~ 229 (629)
...... .+..+..+++... .+.+ .+..+++....... .. ........++.++|+.+||.. +..+++
T Consensus 81 ~~~~~~-----~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 81 RERRKL-----VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred HHHHHH-----hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 000000 0000001111100 0011 11111221110000 00 011234567889999999973 346889
Q ss_pred cCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCC
Q psy10512 230 TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKR 305 (629)
Q Consensus 230 ~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G 305 (629)
+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988753 689999999999999999999999999
Q ss_pred eEEEEcCcH
Q psy10512 306 KLKYYGGNY 314 (629)
Q Consensus 306 ~i~~~~g~~ 314 (629)
+|++.+...
T Consensus 236 ~ive~g~~~ 244 (330)
T PRK15093 236 QTVETAPSK 244 (330)
T ss_pred EEEEECCHH
Confidence 999876543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=317.43 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=162.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
+++|+++||++.|++ . .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~i~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-A-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCC-c-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 458999999999963 3 4899999999999999999999999999999999999999999998863 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc---CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 542 (629)
++|++|... +. ..++.+++... .......+.+.++++.+|+......+++.+|||||+|||+|||||+.+|++|
T Consensus 83 i~~~~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPT--LF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEecccc--cc-cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 778888743 22 34777765421 1111234567789999999643345678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe--CCEEEEecCCH
Q psy10512 543 LLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE--NGKVTKWEGNI 602 (629)
Q Consensus 543 lLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~--~G~i~~~~g~~ 602 (629)
||||||+|||+.+++.+.+.|.++ +.+||++|||++++. .||++++|+ .|+|. +|++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~--~~~~ 222 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ--EARY 222 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh--hhhh
Confidence 999999999999999999988875 468999999999996 699999996 45542 4543
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=317.68 Aligned_cols=201 Identities=26% Similarity=0.343 Sum_probs=168.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|.++|++++|+. . .+|+++||+|.+|++++|+||||||||||+++|+|+++|+.|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~-~-~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFYGG-F-VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEeCC-e-eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 468999999963 3 4899999999999999999999999999999999999999999998763 3578888
Q ss_pred cchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|+.. +....++.+++.... ......+.+..+++.+|+.... ...+..|||||+|||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 79 QNYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-NRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred cccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 333457776654211 1112345677899999997554 4567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|++.. .|+..++.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~~ 219 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEIY 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHH
Confidence 999999999999999998765 5699999999999999999999999999974 67765553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=323.14 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=160.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV--P---VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p---~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.. | ++|+|.+.+.. +.......
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~--~~~~~~~~- 81 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN--IYSPRTDT- 81 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEE--CcCcccch-
Confidence 5899999999998889999999999999999999999999999999999853 5 47888765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC-hhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-ADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.++...+ +.+..+++ .......... .......+.++++.+++.. +..++.+.+|||||
T Consensus 82 ------~~~~~~i~~v~q~~~~~-~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 82 ------VDLRKEIGMVFQQPNPF-PMSIYENV-VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred ------HhhhhcEEEEecCCccC-cCcHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 00000011111111111 12222222 2111111111 1223456778899998742 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++++++.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998765 4799999999999999999999999999998766544
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 234 ~ 234 (252)
T PRK14239 234 M 234 (252)
T ss_pred H
Confidence 3
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=321.44 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=168.5
Q ss_pred CCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC--C---CccEEEECCc------
Q psy10512 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT--P---SVGMVRKNSH------ 463 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~------ 463 (629)
+..++|+++|+++.|+. . .+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 8 ~~~~~l~i~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQ-H-HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred cCCceEEEeeEEEEECC-e-eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 34678999999999963 3 48999999999999999999999999999999999997 3 6899988753
Q ss_pred -------eeEEeeccchhcccCCCCCHHHHHhhc--CC---C-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHH
Q psy10512 464 -------LRFARYHQHLHELLDLDISPLDYMLQS--FP---E-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKC 527 (629)
Q Consensus 464 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkq 527 (629)
..++|++|... +.. .++.+++... .. . ....+++..+++.+++.. .....++.+|||||+|
T Consensus 86 ~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGN--PFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCc--ccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 13678888753 222 3777765321 11 1 112345677889999853 1234578899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+|||+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 241 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKM 241 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999999999999999999886 468999999999999999999999999997 46887776
Q ss_pred H
Q psy10512 606 K 606 (629)
Q Consensus 606 ~ 606 (629)
.
T Consensus 242 ~ 242 (259)
T PRK14274 242 F 242 (259)
T ss_pred h
Confidence 4
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=325.53 Aligned_cols=217 Identities=21% Similarity=0.240 Sum_probs=160.3
Q ss_pred ceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcc
Q psy10512 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 85 ~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~ 159 (629)
+.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|++.+.+.. +.....
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~--i~~~~~- 95 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS--IFNYRD- 95 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE--ccccch-
Confidence 4479999999999999999999999999999999999999999999999999886 57877765422 110000
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCCh
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTK---EMQQKKTKDFSG 235 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 235 (629)
. ...+..+.++.++...+ +.+..+++ ....... ..........+.++++.+|+.. +..++.+.+|||
T Consensus 96 ~-------~~~~~~i~~v~q~~~l~-~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg 166 (276)
T PRK14271 96 V-------LEFRRRVGMLFQRPNPF-PMSIMDNV-LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG 166 (276)
T ss_pred h-------HHHhhheEEeccCCccC-CccHHHHH-HHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH
Confidence 0 00011111111111111 12222222 2111111 1122233445678899999863 245778999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+|||+|||||+.+|+||||||||++||+.++.+|.+.|.++ ..|||+||||++++..+||++++|++|+++..+..
T Consensus 167 Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988765 57999999999999999999999999999877543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.36 Aligned_cols=205 Identities=20% Similarity=0.284 Sum_probs=172.0
Q ss_pred eEEEEEEEEEEcCC----------------------CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 399 VIMVQNVSFRYSDD----------------------GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 399 ~l~~~~l~~~y~~~----------------------~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
.|+++||++-|+.. ...-+.|+||+|+.|||..|+|-+|||||||+|+|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888888631 11247899999999999999999999999999999999999999
Q ss_pred EEEECCc---------------eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCccccc
Q psy10512 457 MVRKNSH---------------LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVC 516 (629)
Q Consensus 457 ~i~~~~~---------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~ 516 (629)
+|.+++. .+++.++|.+. +.+..|++++...+ .+....++++.++|+.+||.++.. +
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~-~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD-K 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh-c
Confidence 9999873 35777888764 44566788776543 344456778999999999998765 5
Q ss_pred CcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCceEEEEecCHHHHHhhcCEEEEEeC
Q psy10512 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHDFRLINQVAEEIWICEN 592 (629)
Q Consensus 517 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l----~~~~~~vi~vsHd~~~~~~~~d~i~~l~~ 592 (629)
++.+|||||||||.|||||+.+|+|||+|||+|+|||--+..+.+.| .++++|||+||||++++.++.|||.+|++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 67999999999999999999999999999999999997666555554 45678999999999999999999999999
Q ss_pred CEEEEecCCHHHHHH
Q psy10512 593 GKVTKWEGNILDYKE 607 (629)
Q Consensus 593 G~i~~~~g~~~~~~~ 607 (629)
|+|+ ..|+++++..
T Consensus 241 G~iv-Q~Gtp~eIl~ 254 (386)
T COG4175 241 GEIV-QVGTPEEILL 254 (386)
T ss_pred CeEE-EeCCHHHHHc
Confidence 9998 4788877643
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=316.96 Aligned_cols=205 Identities=28% Similarity=0.369 Sum_probs=158.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.......+.++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~--~~~~~~~~~~~~~-- 76 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP--WTRKDLHKIGSLI-- 76 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe--ccccccccEEEEc--
Confidence 468999999998899999999999999999999999999999999999999999998875432 1110000010110
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
+....++..+..+++ .....+... ...++.++++.+|+. +..++++.+|||||+||++|||||
T Consensus 77 -----------q~~~~~~~~t~~~~~-~~~~~~~~~----~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral 139 (223)
T TIGR03740 77 -----------ESPPLYENLTARENL-KVHTTLLGL----PDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIAL 139 (223)
T ss_pred -----------CCCCccccCCHHHHH-HHHHHHcCC----CHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHH
Confidence 000011111122222 211111111 134678899999997 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++..+.+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 9999999999999999999999999988765 57999999999999999999999999999876543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=314.46 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=161.8
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce--------eEE
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL--------RFA 467 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--------~~~ 467 (629)
++++|+++|+++.|++ . .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 8 ~~~~l~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 8 APPLLAAHALAFSRNE-E-PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred CcceEEEeeEEEecCC-c-eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceE
Confidence 4568999999999963 3 48999999999999999999999999999999999999999999988732 377
Q ss_pred eeccchhcccCCCCCHHHHHhhc--CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|++|... +....++.+++... .......+.+..+++.+++.... +.++.+|||||||||+|||+++.+|++||||
T Consensus 86 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 86 YLGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-DTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred EeecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8877642 33445777765321 11112345677899999997654 5678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeC
Q psy10512 546 EPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICEN 592 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~ 592 (629)
|||++||+.+++.+.+.|.++ +.|||++|||++++..+||++++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 163 EPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999765 67999999999999999999999863
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=319.94 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=166.2
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC---CCC--CccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD---LTP--SVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~---~~p--~~G~i~~~~~--------- 463 (629)
++|+++|+++.|+. ..+|+++||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.+++.
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 57999999999964 3489999999999999999999999999999999997 455 5899988763
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC-----C-ChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF-----P-EVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +.. .++.+++.... . .....+.+.++++.+|+... ...+++.+|||||||||+
T Consensus 80 ~~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 80 DELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred HHHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 13788888753 222 47777654211 1 11233567788999998531 234577899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~ 233 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999999999999876 368999999999999999999999999997 467776654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=319.35 Aligned_cols=202 Identities=20% Similarity=0.277 Sum_probs=167.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC---CCccEEEECCc-----------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT---PSVGMVRKNSH-----------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-----------~ 464 (629)
+++++|+++.|+. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. .
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 5789999999963 348999999999999999999999999999999999984 79999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc--C-----CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS--F-----PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~lAra 534 (629)
.++|++|+.. .+ ..++.+++... . +.....+++.++++.+++.. .....++.+|||||+|||+||||
T Consensus 80 ~i~~~~q~~~-l~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 80 NVGMVFQQPN-VF--VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hEEEEecCCc-cc--cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 4788888753 22 25777776421 1 11123445778999999953 12345678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 229 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEFF 229 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999875 5689999999999999999999999999974 57766553
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=320.51 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=167.3
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
+|+|+++|+++.|+. ..+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 468999999999963 3489999999999999999999999999999999999885 7999998752
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--CC---C-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--FP---E-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +. ..++.+++... .. . ....+++.++++.+|+.. .....++.+|||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 80 VVELRKRVGMVFQKPN--PF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHHHhheEEEecCCC--cC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 23788888753 22 36777765421 11 1 122345678899998742 223457799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++.
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE-FNKTEKI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence 9999999999999999999999999999999999876 4689999999999999999999999999974 5776665
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=318.19 Aligned_cols=212 Identities=19% Similarity=0.282 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++||+++|++.. .|+||+|.+|+++||+||||||||||+++|+|++.|++|++.+.+............+.++
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~--- 76 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML--- 76 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE---
Confidence 78999999998644 3999999999999999999999999999999999999999887643211000000001011
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.+....++..+..+++ ................++.++++.+|+. ...++++.+|||||+|||+|||||
T Consensus 77 ----------~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 77 ----------FQENNLFSHLTVAQNI-GLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred ----------ecccccccCCcHHHHH-hcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHH
Confidence 1111111111222222 1110000001123356788999999996 578999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.+. |+.+.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~-g~~~~~ 217 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD-GPTDEL 217 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999888654 67999999999999999999999999999865 455544
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=324.44 Aligned_cols=217 Identities=18% Similarity=0.239 Sum_probs=159.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV--P---VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p---~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++. | +.|++.+.+. ++.......
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~--~~~~~~~~~- 88 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS--NILKGKVDL- 88 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE--EccccccCH-
Confidence 6999999999998899999999999999999999999999999999999986 3 4687776543 221000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +.+..+++ ......... .......++.++++.+|+.. +..++++.+|||||
T Consensus 89 ------~~~~~~i~~v~q~~~~~-~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 89 ------VELRKNIGMVFQKGNPF-PQSIFDNV-AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160 (259)
T ss_pred ------HHHhhceEEEecCCccc-ccCHHHHH-HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 00000111111111111 11222222 211111111 22333456778899999852 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
|||++|||||+.+|+||||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|+++..+.+.
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998776 579999999999999999999999999999875443
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=319.39 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=166.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CC---CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TP---SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p---~~G~i~~~~~-------- 463 (629)
.++|+++||++.|+. . .+|+++||+|.+||+++|+||||||||||+++|+|+. .| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~-~-~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNK-K-KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECC-e-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 357999999999963 3 4899999999999999999999999999999999995 46 5999998763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +. ..++.+++... ... ....+.+..+++.+++.. ....+++.+|||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 81 TVDLRKEIGMVFQQPN--PF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hHhhhhcEEEEecCCc--cC-cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH
Confidence 14788888753 22 25777776421 111 112345677888998742 123457789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+..++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999999999999999876 468999999999999999999999999997 46776665
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.22 Aligned_cols=215 Identities=21% Similarity=0.291 Sum_probs=160.7
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---CceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP---DHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~---g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|++ +++|+|+||+|++|+++||+||||||||||+++|+|++.|+. |++.+.+. .+.......
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~--~~~~~~~~~- 81 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI--TLTAKTVWD- 81 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE--ECCcCCHHH-
Confidence 5999999999975 469999999999999999999999999999999999999987 67766443 221110000
Q ss_pred hhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
.+..+..+.+... .++..+..+++ ............+..+++.++++.+|+. +..++++.+|||||+||
T Consensus 82 --------~~~~ig~v~q~~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 82 --------IREKVGIVFQNPDNQFVGATVGDDV-AFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQR 151 (282)
T ss_pred --------HHhheEEEEECHHHhhccCCHHHHH-HhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHH
Confidence 0001111111110 11111222222 2111111223334456788999999997 57889999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+|||||+.+|+||||||||++||+.++..|.+.|.++ +.|||+||||++++. +||++++|++|++++.+.+.+
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988654 679999999999995 799999999999998765433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=323.31 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=159.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|++. |++|++.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~--~~~~~~~~- 80 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN--IYGSKMDL- 80 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE--cccccchH-
Confidence 5899999999998899999999999999999999999999999999999986 367888775432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
...+..+..+.++...+ +. +..++.......... ..+.....+.++++.+++. ....++++.+|||||
T Consensus 81 ------~~~~~~i~~~~q~~~~~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 81 ------VELRKEVGMVFQQPTPF-PF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred ------HHhhccEEEEecCCccC-CC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 00000000111111111 11 222222211111111 1222345677889999984 234678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
+||++|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+.+.
T Consensus 153 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999876 579999999999999999999999999999876543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.74 Aligned_cols=208 Identities=22% Similarity=0.355 Sum_probs=170.1
Q ss_pred CCeEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc------
Q psy10512 397 PPVIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH------ 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~------ 463 (629)
.++|+++|+++.|+.+ ...+|+++||+|.+||++||+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4589999999999631 23489999999999999999999999999999999999997 7999988652
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhh------cCCChhhHHHHHHHHHHcCCCCc--ccccCcCcCChhHH
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQ------SFPEVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQK 526 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqk 526 (629)
..++|++|+....+....++.+++.. ..+.....+++.++++.+||.+. ..++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 24789998753223333455544321 12222234668899999999752 23567899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++ +.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCH
Confidence 9999999999999999999999999999999999999774 578999999999999999999999999997 46776
Q ss_pred HHH
Q psy10512 603 LDY 605 (629)
Q Consensus 603 ~~~ 605 (629)
+++
T Consensus 242 ~~~ 244 (529)
T PRK15134 242 ATL 244 (529)
T ss_pred HHH
Confidence 665
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=326.08 Aligned_cols=219 Identities=23% Similarity=0.340 Sum_probs=161.2
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC
Q psy10512 87 DVKIANFSITFH---------GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~---------~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~ 157 (629)
+|+++||++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++.|++|++.+.+.. +....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~--~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP--LAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe--ccccC
Confidence 489999999997 4789999999999999999999999999999999999999999998876432 11100
Q ss_pred cchhhhhhhchHHHHHHHHHHHHH-hccCChhHHHHHHHH-HhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDI-YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
..... ..+..+..+.+.. ..+.+..+..++... ...+..........++.++++.+|+.....++.+.+|||
T Consensus 81 ~~~~~------~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 81 RAQRK------AFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred hhHHH------HHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 00000 0000010111111 011111122222111 111112223334457889999999964567889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+||++|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++++.+
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 9999999999999999999999999999999999988887644 679999999999999999999999999998765
Q ss_pred Cc
Q psy10512 312 GN 313 (629)
Q Consensus 312 g~ 313 (629)
.+
T Consensus 235 ~~ 236 (268)
T PRK10419 235 PV 236 (268)
T ss_pred Ch
Confidence 43
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=320.13 Aligned_cols=224 Identities=21% Similarity=0.315 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCc
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDK 158 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~ 158 (629)
++++||+.+|.. ..+++||||+|++||++||||+|||||||+.+.|.|++++. .|++.+ .+.++...+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f--~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF--DGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEE--CCcccccCCH
Confidence 789999999953 46999999999999999999999999999999999998732 244433 3332221110
Q ss_pred chhhhhhhchHHHHHHHHHHHH-HhccCC-hhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCch--hhhcccCCC
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQ-LVACED-DESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTKE--MQQKKTKDF 233 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~L 233 (629)
.....+. ...+..++|+ ...+.+ .....++.+....-... ...++.+++.++|+.+||+.. ..+.++++|
T Consensus 80 ~~~~~iR-----G~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhel 154 (316)
T COG0444 80 KELRKIR-----GKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL 154 (316)
T ss_pred HHHHhhc-----CceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCccc
Confidence 0000000 0000011111 011111 11222333322211122 345677899999999999854 679999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
||||+|||.||.||+.+|+|||.||||++||...+..++++|++ .+.++|+||||+..+.++||||+||..|+|++
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 99999999999999999999999999999999999998888764 47899999999999999999999999999999
Q ss_pred EcCcHHHHH
Q psy10512 310 YGGNYEAFC 318 (629)
Q Consensus 310 ~~g~~~~~~ 318 (629)
.|...+.|.
T Consensus 235 ~g~~~~i~~ 243 (316)
T COG0444 235 EGPVEEIFK 243 (316)
T ss_pred eCCHHHHhc
Confidence 987655543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=319.22 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=166.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC--C---CccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT--P---SVGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~---------- 463 (629)
.|+++|+++.|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+++.
T Consensus 4 ~l~~~nl~~~~~~-~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGK-N-HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCC-e-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 5899999999963 3 48999999999999999999999999999999999986 4 6899998762
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|+.. +....++.+++...+ ......+.+.++++.+|+.. .....++.+|||||+|||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 82 SIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 13678888743 334467777664211 11122355778899999853 12345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKIF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999877 4689999999999999999999999999974 67766653
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=324.34 Aligned_cols=222 Identities=19% Similarity=0.233 Sum_probs=162.4
Q ss_pred CCCceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCC
Q psy10512 82 HPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPAS 156 (629)
Q Consensus 82 ~~~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~ 156 (629)
++...+|+++|++++|+++++|+|+||+|.+||++||+|||||||||||++|+|++. |++|++.+.+.. +...
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--~~~~ 92 (267)
T PRK14237 15 PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID--INRK 92 (267)
T ss_pred CCCCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE--cccc
Confidence 334457999999999998899999999999999999999999999999999999986 468888765422 1100
Q ss_pred CcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCCc---hhhhcccCC
Q psy10512 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFTK---EMQQKKTKD 232 (629)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~ 232 (629)
..... ..+..+..+.+....+ +. +..++......... ........++.++++.+++.. +..++++.+
T Consensus 93 ~~~~~-------~~~~~i~~v~q~~~~~-~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 163 (267)
T PRK14237 93 EINVY-------EMRKHIGMVFQRPNPF-AK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALT 163 (267)
T ss_pred cCChH-------HHhcceEEEecCCccc-cc-cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCccc
Confidence 00000 0000011111111111 11 22222221111111 122234566788899999852 356788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||+||++|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|++++.
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 47999999999999999999999999999987
Q ss_pred cCcH
Q psy10512 311 GGNY 314 (629)
Q Consensus 311 ~g~~ 314 (629)
+.+.
T Consensus 244 g~~~ 247 (267)
T PRK14237 244 DKTR 247 (267)
T ss_pred CCHH
Confidence 6543
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=318.94 Aligned_cols=181 Identities=26% Similarity=0.437 Sum_probs=150.5
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEeeccchhcccCCCCCHH
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFARYHQHLHELLDLDISPL 484 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~~~q~~~~~~~~~~~~~ 484 (629)
.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|... .+....++.
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-ccCCCCcHH
Confidence 48999999999999999999999999999999999999999999987642 4667653321 233456777
Q ss_pred HHHhh--c---CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 485 DYMLQ--S---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 485 ~~~~~--~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
+++.. . .......+.+..+++.+|+.... ++++.+|||||||||+||+||+.+|++|||||||++||+.++..+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 66421 1 11112234567889999997543 457899999999999999999999999999999999999999999
Q ss_pred HHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 560 ADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 560 ~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999876 4689999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=321.75 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=161.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+..| ++|++.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~~- 80 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN--IYDKDVDV- 80 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe--cccccccH-
Confidence 58999999999988899999999999999999999999999999999999875 67888765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+.... .+. +..++.......... .......++.++++.+|+.. ...++++.+|||||
T Consensus 81 ------~~~~~~i~~~~q~~~~-~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 81 ------VELRKRVGMVFQKPNP-FPM-SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred ------HHHHhheEEEecCCCc-CCC-cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 0000011111111111 111 222222221111111 12233456778999998742 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++++++.+.+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999998866 5799999999999999999999999999998866544
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 233 ~ 233 (251)
T PRK14270 233 I 233 (251)
T ss_pred H
Confidence 3
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=316.48 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=159.5
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+... .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 78999999996323 3899999999999999999999999999999999999999999998762 24788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcC-----------CCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG-----------LTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
++|... +.. .++.+++...... .....+..+++.++ +... ...++.+|||||||||+|||||+.
T Consensus 82 ~~q~~~--~~~-~tv~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 82 VLQDTF--LFS-GTIMENIRLGRPN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTV-LGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred ecCCch--hhh-hHHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCcccccCH-hhcCCCcCCHHHHHHHHHHHHHhc
Confidence 888753 222 3677766432221 12233444444443 3322 234568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||++++. .||++++|++|+++ +.|+.+++.
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~ 225 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELL 225 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHH
Confidence 99999999999999999999999999876 368999999999996 49999999999997 467776654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=324.81 Aligned_cols=212 Identities=23% Similarity=0.247 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--------CCceEEEeecccCCCCCcc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV--------PDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~--------~g~i~i~~~~~~~~~~~~~ 159 (629)
|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ .|++.+.+.. +......
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~--~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP--LAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEE--cccCCHH
Confidence 88999999999999999999999999999999999999999999999999987 7877765422 1110000
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHh--hh--hccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--RL--DDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l--~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
..+.....+.+........ +..++..... .. ..........++.++++.+|+. ...++++.+|||
T Consensus 80 ---------~~~~~~~~v~q~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 148 (272)
T PRK13547 80 ---------RLARLRAVLPQAAQPAFAF-SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSG 148 (272)
T ss_pred ---------HHHhhcEEecccCCCCCCC-cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCH
Confidence 0000011111111111111 2222221110 00 0001122345678899999996 567899999999
Q ss_pred HHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 236 GWRMRIALARALY---------VKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 236 GqrqRv~LAraL~---------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
||+|||+|||||+ .+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 599999999999999999999999988653 679999999999999999999999
Q ss_pred cCCeEEEEcC
Q psy10512 303 DKRKLKYYGG 312 (629)
Q Consensus 303 ~~G~i~~~~g 312 (629)
++|+++..+.
T Consensus 229 ~~G~i~~~g~ 238 (272)
T PRK13547 229 ADGAIVAHGA 238 (272)
T ss_pred ECCeEEEecC
Confidence 9999987654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=353.53 Aligned_cols=202 Identities=21% Similarity=0.312 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
++|+++|++++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 57999999999953 34899999999999999999999999999999999999999999998762 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC------C---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF------P---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
++|++|... +....++.+++.... . .....+++.++++.+|+.+.. ++++.+|||||||||+|||||+
T Consensus 81 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 81 IGIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-DKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHHHHHHHHh
Confidence 789988753 345678888764321 0 111234678899999997654 5678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVADL 228 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcC
Confidence 999999999999999999999999888765 5689999999999999999999999999974 5655443
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=322.32 Aligned_cols=217 Identities=20% Similarity=0.262 Sum_probs=157.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|++.|. +|++.+.+.. +........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD--IYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE--cccCccCHH
Confidence 589999999999889999999999999999999999999999999999998875 5877765432 110000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
..+..+..+.++...+...+..+++ ......... ......+.+.+++..+++.. +..++++.+|||||
T Consensus 82 -------~~~~~i~~~~q~~~~~~~~t~~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 82 -------AMRRRVGMVFQKPNPFPTMSVFDNV-VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred -------HhhceeEEEeccCccCcCCCHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 0000011111111111111222222 211111111 12223455667777777631 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+||++|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|++++.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998876 48999999999999999999999999999876543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=326.64 Aligned_cols=212 Identities=22% Similarity=0.340 Sum_probs=159.4
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+.+... .......+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i--~~~~~~~~--- 81 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI--SKENLKEI--- 81 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec--CcCCHHHH---
Confidence 599999999995 46799999999999999999999999999999999999999999988764321 11000000
Q ss_pred hhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
+..+..+.+... .+...+..+++ ........+.......++.++++.+|+. ...++.+.+|||||+||++|
T Consensus 82 ------~~~i~~v~q~~~~~~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 82 ------RKKIGIIFQNPDNQFIGATVEDDI-AFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred ------hcceEEEEeCHHHhcCcccHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHH
Confidence 000000001100 01111222222 2111111223333455788999999996 56789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. +||++++|++|++...+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999998765 379999999999996 799999999999987654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=323.28 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=167.5
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc-------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~------- 463 (629)
+.++|+++||++.|+. . .+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 36 ~~~~l~i~~l~~~~~~-~-~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD-E-QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC-E-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4678999999999963 3 48999999999999999999999999999999999997 68999988763
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|+.. +.. .++.+++.... ......+++.++++.+|+.. ....+++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPN--PFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCc--cCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 13678888753 222 37777654211 11123456788999999852 1234577999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEE-EEeCCEEEEecCCHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIW-ICENGKVTKWEGNILDY 605 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~ 605 (629)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.+||+||||++++..+||+++ +|++|+|+. .|+..++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999887 4689999999999999999975 579999974 6776654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=319.32 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=165.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-----ccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-----VGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~---------- 463 (629)
+|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 6899999999963 34899999999999999999999999999999999999874 899988762
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhcC--C---Ch-hhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQSF--P---EV-KDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|+.. +....++.+++.... . .. ...+.+..++..+++.. ...+.++.+|||||+|||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14272 82 AMRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI 159 (252)
T ss_pred HhhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence 14778888753 344467777664211 1 11 12234556677776531 12346789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999999998763 78999999999999999999999999997 467776654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=321.68 Aligned_cols=205 Identities=21% Similarity=0.306 Sum_probs=168.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|.++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 568999999999963 3489999999999999999999999999999999999986 6999998762
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +.. .++.+++.... ........+.++++.+|+... ...+++.+|||||+|||+
T Consensus 97 ~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 24678888753 222 57777664321 111122345678899998642 224567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||+.+|+||||||||++||+.+++.|.+.|.++ ..|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 251 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLFS 251 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999999999999999999876 4689999999999999999999999999974 677776643
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=313.33 Aligned_cols=189 Identities=26% Similarity=0.350 Sum_probs=158.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------e
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------L 464 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~ 464 (629)
+.+ +|+++|++ ..+ |+||+|++ ++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 89999964 224 99999999 999999999999999999999999999999988763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
.++|++|... +....++.+++.... ......+++.++++.+|+... .++++.+|||||||||+|||||+.+|++
T Consensus 76 ~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 76 KIGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHL-LNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred cEEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhH-hhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 4778888753 334567777654221 111234567889999999754 3567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|+++.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999998765 5689999999999999999999999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=318.54 Aligned_cols=203 Identities=23% Similarity=0.270 Sum_probs=166.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 463 (629)
++|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 37899999999963 3489999999999999999999999999999999999984 8999998762
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhc--C---CC-hhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQS--F---PE-VKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|+.. +. ..++.+++... . .. ....+.+..+++.+|+... ....++.+|||||+|||+
T Consensus 80 ~~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 80 TEYRKKVGMVFQKPT--PF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred HHhhhhEEEEecCCc--cC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 24778888653 22 36777766421 1 11 1123456778899998532 235578999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIV 233 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 999999999999999999999999999999999876 468999999999999999999999999997 467776654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=321.58 Aligned_cols=201 Identities=30% Similarity=0.378 Sum_probs=167.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC--------ccEEEECCce------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS--------VGMVRKNSHL------ 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~--------~G~i~~~~~~------ 464 (629)
||+++|+++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++..
T Consensus 1 ml~~~nl~~~~~~-~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH-R-AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC-E-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 4889999999953 3 4899999999999999999999999999999999999998 9999987631
Q ss_pred -----eEEeeccchhcccCCCCCHHHHHhhcC-C--------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHH
Q psy10512 465 -----RFARYHQHLHELLDLDISPLDYMLQSF-P--------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 465 -----~~~~~~q~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 530 (629)
.++|++|... ..+..++.+++.... + .....+.+.++++.+|+.... ++++.+|||||+|||+
T Consensus 79 ~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 79 PRLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-GRDVTTLSGGELARVQ 155 (272)
T ss_pred HHHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHH
Confidence 2577787643 223467777764321 1 011234578899999997644 4678999999999999
Q ss_pred HHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 531 FAYLAW---------QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 531 lAral~---------~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|||||+ .+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~- 234 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV- 234 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-
Confidence 999999 599999999999999999999999998765 468999999999999999999999999997
Q ss_pred ecCCHHHH
Q psy10512 598 WEGNILDY 605 (629)
Q Consensus 598 ~~g~~~~~ 605 (629)
..|+.+++
T Consensus 235 ~~g~~~~~ 242 (272)
T PRK13547 235 AHGAPADV 242 (272)
T ss_pred EecCHHHH
Confidence 46777665
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=298.84 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=166.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
||+++|++++..+ + .+++++||++.+||+++|+||||||||||||.|+|.+.|++|++.+++.. ..+
T Consensus 1 mi~a~nls~~~~G-r-~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAG-R-RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeec-c-eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 5889999999853 3 48999999999999999999999999999999999999999999998742 234
Q ss_pred eeccchhcccCCCCCHHHHHhhcC-C----Ch--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc---
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF-P----EV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ--- 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~-~----~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~--- 537 (629)
.++|... +.+..++.+.+..+. + .. .+.+.++++|.+.++.+...+ ...+|||||||||.|||.|++
T Consensus 79 VlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~ 155 (259)
T COG4559 79 VLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWP 155 (259)
T ss_pred hcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccC
Confidence 4566543 455667777654331 1 11 234457889999999876654 457999999999999999976
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 538 ---APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 538 ---~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
++++|+|||||+.||+..+..++++.+++ +++|+.|-||++++..+||||++|++|+++. .|++.+.
T Consensus 156 ~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~v 228 (259)
T COG4559 156 PVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDV 228 (259)
T ss_pred CCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHh
Confidence 34599999999999999999999998877 5689999999999999999999999999984 7887664
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=319.25 Aligned_cols=202 Identities=18% Similarity=0.275 Sum_probs=166.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~--------- 463 (629)
++|+++|++++|+. . .+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~-~-~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGN-Y-EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECC-e-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 47999999999963 3 48999999999999999999999999999999999997 48999988763
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC-----CC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF-----PE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +. ..++.+++.... .. ....+.+..+++.+++.. ...+.++.+|||||+||++
T Consensus 81 ~~~~~~i~~~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 81 VELRKEVGMVFQQPT--PF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred HHhhccEEEEecCCc--cC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 13678887753 22 357777664221 11 112345678889999842 1234577899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999876 5689999999999999999999999999975 5776654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=325.48 Aligned_cols=221 Identities=19% Similarity=0.264 Sum_probs=159.2
Q ss_pred CCceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCC
Q psy10512 83 PKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASD 157 (629)
Q Consensus 83 ~~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~ 157 (629)
|...+|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|++. |++|++.+.+.. +....
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~ 97 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN--IFDKS 97 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE--ccccc
Confidence 44557999999999998889999999999999999999999999999999999987 578888775432 11000
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCC---chhhhcccCCC
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFT---KEMQQKKTKDF 233 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~L 233 (629)
.... ..+..+..+.+....+ ..+..+++ ......... ........+.++++.+++. .+..++++.+|
T Consensus 98 ~~~~-------~~~~~i~~v~q~~~~~-~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 98 YSVE-------ELRTNVGMVFQKPNPF-PKSIYDNV-TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred ccHH-------HHhhhEEEEecCCccc-cccHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 0000 0000000011111111 11122222 211111111 1112344567777777542 23567889999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++.++
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988776 579999999999999999999999999999876
Q ss_pred CcH
Q psy10512 312 GNY 314 (629)
Q Consensus 312 g~~ 314 (629)
...
T Consensus 249 ~~~ 251 (271)
T PRK14238 249 DTD 251 (271)
T ss_pred CHH
Confidence 543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=321.28 Aligned_cols=204 Identities=20% Similarity=0.191 Sum_probs=166.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
+++|+++||++.|+. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 468999999999963 348999999999999999999999999999999999987 69999998763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC--C--ChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF--P--EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|+.. +.. .|+.+++.... . .....+.+.++++.+++.. ...++++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 14788888753 222 37777664221 1 1122355677888888742 22345778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeC-----------CEEEEe
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICEN-----------GKVTKW 598 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~-----------G~i~~~ 598 (629)
||||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++ |+++ .
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-E 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-E
Confidence 99999999999999999999999999999999876 36899999999999999999999996 5566 4
Q ss_pred cCCHHHHH
Q psy10512 599 EGNILDYK 606 (629)
Q Consensus 599 ~g~~~~~~ 606 (629)
.|+..++.
T Consensus 245 ~~~~~~~~ 252 (269)
T PRK14259 245 FNETKKIF 252 (269)
T ss_pred eCCHHHHH
Confidence 67776653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=315.76 Aligned_cols=201 Identities=28% Similarity=0.415 Sum_probs=161.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+.....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643224899999999999999999999999999999999999999999998763 24788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHH---------HHHHHHHHc--CCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDRE---------EMRKIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
++|+.. +. ..++.+++....... ... .+.++++.+ ++... ...++.+|||||+|||+|||||+.
T Consensus 81 ~~q~~~--~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 81 VSQDVF--LF-NDTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTV-IGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred eCCCCe--ec-cccHHHHhhccCCCC-CHHHHHHHHHHcCcHHHHHhcccCccee-eccCCCcCCHHHHHHHHHHHHHhc
Confidence 888753 22 357777765322111 111 123445555 55543 345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||++||+.+++.+.+.|.++ +.+||+||||++++.. ||++++|++|+++ ..|+++++..
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~ 225 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLA 225 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHH
Confidence 99999999999999999999999999876 5689999999999976 9999999999997 4677766643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=316.32 Aligned_cols=208 Identities=28% Similarity=0.380 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCc--chhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK--SALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~--~~~~~~~ 165 (629)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|.+|++.+.+.. +..... ..+.++
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~--~~~~~~~~~~i~~~- 77 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD--ATRVHARDRKIGFV- 77 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--cCcCChhhcCEEEE-
Confidence 478999999999899999999999999999999999999999999999999999998875432 111000 001111
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
. +....++..+..+++ ...............+.+.++++.+++. ...++.+.+|||||+||++|||
T Consensus 78 --~----------q~~~~~~~~t~~enl-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 78 --F----------QHYALFKHLTVRDNI-AFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred --e----------cChhhccCCcHHHHH-HhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHH
Confidence 0 000111111122222 1111111122223345678899999996 5788999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|++|||||||++||+.++.++.+.|.+. +.|||++||+++++..+||++++|++|++++.+.
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 214 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecC
Confidence 999999999999999999999999999988754 6899999999999999999999999999987644
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=303.88 Aligned_cols=212 Identities=23% Similarity=0.271 Sum_probs=160.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc--hhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS--ALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~--~~~~~ 164 (629)
+++++||+..||..++|++|||++++||+++|+|+||+||||||++|+|+.+|.+|+|.+.+. ++...... ....+
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~--dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE--DITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCe--ecCCCCHHHHHhCCe
Confidence 599999999999999999999999999999999999999999999999999999999887643 33222110 10111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHH-HHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA-RAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
..+++.|. .+ +..++++++.+.... ...+.... ..+++.+.|---.+..+++..+|||||||.++|
T Consensus 81 ~~VPegR~----------iF-~~LTVeENL~~g~~~--~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 81 AYVPEGRR----------IF-PRLTVEENLLLGAYA--RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred EeCccccc----------ch-hhCcHHHHHhhhhhc--ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 11111111 12 223333333321111 11111111 266677777544578899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+.+|++|||||||.||-|.-+..+++.++++ +.||++|.++..++..++||.++|++|+++..|..
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCH
Confidence 99999999999999999999999999999988655 45999999999999999999999999999976544
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=314.38 Aligned_cols=191 Identities=25% Similarity=0.365 Sum_probs=158.3
Q ss_pred eEEEEEEEEEEcC----C-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC--C---c-----
Q psy10512 399 VIMVQNVSFRYSD----D-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--S---H----- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~----~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--~---~----- 463 (629)
+|+++|+++.|+. + ...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1 1358999999999999999999999999999999999999999999986 2 1
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHH
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +....++.+++... .......+.+.++++.+|+.....+.++.+|||||+|||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 24788888753 34456776665321 111123456788999999975444567899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999875 4689999999999999999999763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=324.00 Aligned_cols=219 Identities=19% Similarity=0.269 Sum_probs=158.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
.+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++ |++|++.+.+.. +.......
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~--i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD--LYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--cccccCCH
Confidence 36999999999998899999999999999999999999999999999999986 578888765422 11000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +. +..++........... ....+++.++++.+++. .+..++++.+|||||
T Consensus 90 -------~~~~~~i~~v~q~~~l~-~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 90 -------VEVRRRIGMVFQQPNPF-PK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred -------HHHhhceEEEccCCccc-hh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 00000011111111111 11 2222222111111111 12345667788888764 235688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcC-----------
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDK----------- 304 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~----------- 304 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999876 47999999999999999999999996
Q ss_pred CeEEEEcCcHHH
Q psy10512 305 RKLKYYGGNYEA 316 (629)
Q Consensus 305 G~i~~~~g~~~~ 316 (629)
|++++.+.+.+.
T Consensus 240 g~~~~~~~~~~~ 251 (269)
T PRK14259 240 GYLVEFNETKKI 251 (269)
T ss_pred ceEEEeCCHHHH
Confidence 567777655443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=325.56 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=159.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|++. |++|+|.+.+............
T Consensus 39 ~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~- 117 (285)
T PRK14254 39 VIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA- 117 (285)
T ss_pred eEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh-
Confidence 5999999999998899999999999999999999999999999999999986 5788887754321000000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGWR 238 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqr 238 (629)
.+..+..+.+....+ +. +..++............ ....++.++++.+|+.. +..++++.+||||||
T Consensus 118 --------~~~~i~~v~q~~~l~-~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 118 --------LRRRIGMVFQKPNPF-PK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred --------hhccEEEEecCCccC-cC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 000000011111111 11 22222221111111111 33456888999999852 356788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeE-EEcCCeEEEEcCcHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNII-HLDKRKLKYYGGNYE 315 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii-~l~~G~i~~~~g~~~ 315 (629)
|||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+++ +|++|+++..+...+
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999876 4799999999999999999975 679999998755433
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=325.02 Aligned_cols=212 Identities=20% Similarity=0.241 Sum_probs=158.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.. +.......
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~--~~~~~~~~---- 80 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQA--ITDDNFEK---- 80 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--CCcCCHHH----
Confidence 5999999999975 359999999999999999999999999999999999999999998875432 11100000
Q ss_pred hhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
.+..+..+.++.. .+......+++ ................++.++++.+|+. +..++++.+||||||||++|
T Consensus 81 -----~~~~i~~v~q~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 81 -----LRKHIGIVFQNPDNQFVGSIVKYDV-AFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAI 153 (269)
T ss_pred -----HHhheeEEEeChHHhcccccHHHHH-HhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHH
Confidence 0000101111100 01111111221 1111111122333445778899999996 56788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||+|++|++|+++..+.
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~ 225 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGT 225 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999988754 5799999999999985 99999999999987654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=316.08 Aligned_cols=211 Identities=25% Similarity=0.337 Sum_probs=159.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|+++.|++. +|+|+||+|.+|++++|+||||||||||+++|+|+++|+.|++.+.+............+..
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~---- 75 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISY---- 75 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEE----
Confidence 4689999999875 89999999999999999999999999999999999999999988765321100000000000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..++...++..+..+++ .................+.++++.+|+. ...++.+.+|||||+|||+|||||
T Consensus 76 ---------~~q~~~~~~~~t~~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 ---------VPQNYALFPHMTVYKNI-AYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred ---------EeecCccCCCccHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHH
Confidence 11111111111222222 2111111122334456778899999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
+.+|++|||||||++||+.++.++++.|+++ +.|||++||+++++..+||++++|++|++++.+ +++
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~-~~~ 215 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG-KPE 215 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEec-CHH
Confidence 9999999999999999999999999988764 689999999999999999999999999998764 444
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=323.58 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=160.1
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCc
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDK 158 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~ 158 (629)
...+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++.| ++|++.+.+.. +.....
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~--i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN--IYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE--Cccccc
Confidence 34469999999999988999999999999999999999999999999999999873 78888775432 111000
Q ss_pred chhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCC
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFS 234 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 234 (629)
.. ...+..+..+.+....+ +. +..++.......... .......++.++++.+++.. ...++.+.+||
T Consensus 100 ~~-------~~~~~~i~~v~q~~~l~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 100 DV-------AELRRRVGMVFQRPNPF-PK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CH-------HHHhccEEEEecCCccC-cc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 00 00000000111111111 11 222222211111111 11223456788899999853 35678899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999988765 5799999999999999999999999999987654
Q ss_pred c
Q psy10512 313 N 313 (629)
Q Consensus 313 ~ 313 (629)
.
T Consensus 251 ~ 251 (272)
T PRK14236 251 T 251 (272)
T ss_pred H
Confidence 3
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=319.97 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=167.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
.++|+++||+++|+. . .+|+|+||+|.+||+++|+|||||||||||++|+|+++ |++|+|.+++.
T Consensus 18 ~~~l~~~nl~~~~~~-~-~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK-K-EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC-e-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 458999999999953 3 48999999999999999999999999999999999997 58999988762
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC--C----ChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF--P----EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +. ..++.+++.... . .......+.++++.+++.. ....+++.+|||||+|||
T Consensus 96 ~~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 96 VYEMRKHIGMVFQRPN--PF-AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred hHHHhcceEEEecCCc--cc-cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 13788888743 22 247777764321 1 1122345678899999852 223467899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.+||+||||++++..+||++++|++|+++. .|+..++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999999876 3689999999999999999999999999974 6777665
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=351.84 Aligned_cols=203 Identities=22% Similarity=0.288 Sum_probs=171.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCc-----------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSH----------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~----------- 463 (629)
.++|+++|++++|++ ..+|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 358999999999963 3489999999999999999999999999999999999996 8999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhcC--------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQSF--------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
..++|++|... +....++.+++.... ......+.+.++++.+|+... .++++.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 81 RAGIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-PATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HCCeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHHHHHH
Confidence 24789998753 344578887764321 111223567889999999754 456789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|+.+|+||||||||++||+.++..+.+.|.++ +.+||+||||++++..+||+|++|++|+++ +.|+.+++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence 99999999999999999999999999998776 468999999999999999999999999997 45665544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=336.96 Aligned_cols=212 Identities=23% Similarity=0.320 Sum_probs=158.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|++ ||+++|+++.+ |+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +....... ..
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~--~~~~~~~~-----~~ 71 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV--LFDAEKGI-----CL 71 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--cccccccc-----cc
Confidence 777 99999988653 8999999999999999999999999999999999999998875432 11000000 00
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
...+..+..+.+....++..+..+++ ... +. .....++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl-~~~--~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNL-RYG--MA----KSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHH-Hhh--hh----hhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHH
Confidence 00000111111111112222222222 111 00 12345688999999996 568999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
+.+|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|+++.++.+.+.+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999888654 679999999999999999999999999999887655444
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=299.84 Aligned_cols=164 Identities=24% Similarity=0.312 Sum_probs=144.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 479 (629)
|+++|+++.|+.+ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|+.. + .
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~-~ 76 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--L-P 76 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--c-c
Confidence 4689999999533 3489999999999999999999999999999999999999999999988778999998753 2 2
Q ss_pred CCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
..++.+++... ++.+|||||||||+|||||+.+|++|||||||++||+.++..+
T Consensus 77 ~~tv~~nl~~~--------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l 130 (166)
T cd03223 77 LGTLREQLIYP--------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130 (166)
T ss_pred cccHHHHhhcc--------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH
Confidence 34666554310 3478999999999999999999999999999999999999999
Q ss_pred HHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
.+.|.+++.|+|+||||.+++ .+||++++|+++.
T Consensus 131 ~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 131 YQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 999999888999999999876 6899999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=318.16 Aligned_cols=206 Identities=23% Similarity=0.322 Sum_probs=168.0
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
..|+|.++|++++|++ ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 3578999999999963 34899999999999999999999999999999999999999977765431
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +....++.+++... +.. ......+.++++.+++.. .....++..||||||||+
T Consensus 85 ~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 85 AIKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred HHHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 24678887643 33446777765421 111 122345778899999853 223456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999999999876 3689999999999999999999999999975 57666654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=316.77 Aligned_cols=202 Identities=24% Similarity=0.296 Sum_probs=165.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 463 (629)
.|+++||++.|++ . .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD-F-QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC-c-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 4899999999963 3 489999999999999999999999999999999999863 6999998762
Q ss_pred ---eeEEeeccchhcccCCCCCHHHHHhhc--CC---C-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHH
Q psy10512 464 ---LRFARYHQHLHELLDLDISPLDYMLQS--FP---E-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... +.. .++.+++... .. . ....+.+.++++.+++.. ...++++.+|||||+|||+|
T Consensus 81 ~~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 81 QLRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 23778888753 222 5777765421 11 1 122456777888888742 12345789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 233 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDLF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 4689999999999999999999999999974 67766653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=320.63 Aligned_cols=220 Identities=24% Similarity=0.315 Sum_probs=164.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEee----cccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL----TREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~----~~~~~~~~~~~~~ 162 (629)
.|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|++.|++|++.+.+. +..+.... .
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~--~-- 85 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID--A-- 85 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC--H--
Confidence 599999999999999999999999999999999999999999999999999999988765431 11110000 0
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGWR 238 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqr 238 (629)
...+..+....++...+ +..+..++.......... .......++.++++.+|+.. +..++.+..||||||
T Consensus 86 -----~~~~~~i~~~~q~~~~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 86 -----IKLRKEVGMVFQQPNPF-PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQ 159 (257)
T ss_pred -----HHHhcceEEEccCCccC-CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHH
Confidence 00011111111111111 111222222222111111 22334467888999999852 356788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||++|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+|||+++++..+||++++|++|+++.+++..+.
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999765 47999999999999999999999999999988765443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=358.70 Aligned_cols=205 Identities=28% Similarity=0.373 Sum_probs=176.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
.-|+++||+|+|+.+.+++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 358999999999877667999999999999999999999999999999999999999999999873 468
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccC----------cCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP----------IRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~ 536 (629)
+|+.|+.. -++-|+.+++....+.. ..+++.+++...|..+.....| ...||||||||++|||||+
T Consensus 550 g~V~Q~~~---Lf~gSI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 550 GYVLQDPF---LFSGSIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred eEEcccch---hhcCcHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 99999753 35668899988776653 4456666766666644333222 3579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
++|+|||||||||+||+++...+.+.|.++. .|+|+|||++..+. .||||+||++|+|+ .+|+.++..+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv-~~gs~~ell~~ 697 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIV-EQGSHEELLAQ 697 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCcee-ccCCHHHHHHh
Confidence 9999999999999999999999999999985 89999999999995 59999999999998 48998887654
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=293.14 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=162.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
.|+++++++..+. ..+|++|+|.|++||.++|||||||||||||-+++|+..|++|++.+.+.. ....+.....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~--L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQP--LHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcc--hhhcCHHHHH
Confidence 5899999998864 469999999999999999999999999999999999999999999886432 1111100000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
. .....+..+++.+...++.+..+++ .+...+.+-...+....+.++|+.+|+. .....+|.+|||||||||+
T Consensus 84 ~-----~R~~~vGfVFQSF~Lip~ltAlENV-~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVA 156 (228)
T COG4181 84 A-----LRARHVGFVFQSFHLIPNLTALENV-ALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVA 156 (228)
T ss_pred H-----hhccceeEEEEeeeccccchhhhhc-cchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHH
Confidence 0 0001111222333333444444433 3333444434556677899999999997 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
|||||+..|+||+.||||.+||-.+-..+.++| ++.+.|+|+||||+..+.+ |+|++.|.+|+|+.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 999999999999999999999999988777766 4457899999999999886 99999999999974
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=320.57 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=155.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCCceEEEeecccCCCCCcchh--h
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVPDHIDIFHLTREMPASDKSAL--T 162 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~g~i~i~~~~~~~~~~~~~~~--~ 162 (629)
+|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+. +|++|++.+.+.. +...+.... .
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~--~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD--LLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc--cccCCHHHHhhc
Confidence 388999999999888999999999999999999999999999999999995 6889988775432 111000000 0
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh------hccChhhHHHHHHHHHHhCCCCchhhhcccC-CCCh
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL------DDISADTAEARAANILHGLGFTKEMQQKKTK-DFSG 235 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSG 235 (629)
.+..+.+... ..+..........+...+ ..+........+.++++.+++..+..++.+. +|||
T Consensus 79 ~i~~~~q~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPV----------EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 148 (248)
T ss_pred ceEEEecCch----------hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH
Confidence 0000000000 000000000000000000 0011122345678899999996556677775 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~~ 311 (629)
||||||+|||||+.+|+||||||||++||+.++.++.+.|+++ ++|||+||||++++..+ ||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~- 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS- 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe-
Confidence 9999999999999999999999999999999999999877654 67999999999999987 899999999999865
Q ss_pred CcHH
Q psy10512 312 GNYE 315 (629)
Q Consensus 312 g~~~ 315 (629)
|+++
T Consensus 228 g~~~ 231 (248)
T PRK09580 228 GDFT 231 (248)
T ss_pred CCHH
Confidence 4554
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.52 Aligned_cols=202 Identities=24% Similarity=0.367 Sum_probs=161.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC--CCCCccEEEECCce----------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD--LTPSVGMVRKNSHL---------- 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~---------- 464 (629)
+++|+++||++.|++ . .+|+++||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+++..
T Consensus 5 ~~~l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 5 KPILEIKNLHASVNE-N-EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred CceEEEEeEEEEeCC-E-EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 357999999999963 3 489999999999999999999999999999999998 58999999987631
Q ss_pred --eEEeeccchhcccCCCCCHHHHHhhcC---------CCh---hhHHHHHHHHHHcCCCCcccccCcC-cCChhHHHHH
Q psy10512 465 --RFARYHQHLHELLDLDISPLDYMLQSF---------PEV---KDREEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRV 529 (629)
Q Consensus 465 --~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv 529 (629)
.++|++|... +....+..+++.... ... ...+.+.++++.+|+......+++. .|||||+|||
T Consensus 83 ~~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 83 HLGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eeeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH
Confidence 2455666532 223345555432111 000 1124567889999997333344555 5999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 603 (629)
+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||++++|++|+++ +.|+++
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence 9999999999999999999999999999999999876 56899999999999887 8999999999997 567765
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=319.73 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=158.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++++|+|+||+|++|++++|+|||||||||||++|+|++.| ++|++.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~--~~~~~~~~- 79 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD--IYDPQLDV- 79 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE--cccchhhH-
Confidence 58999999999988999999999999999999999999999999999999874 67888765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+....++.. ..+.+..+++ ......... .....+..+.++++.+|+.. ...++++.+|||||
T Consensus 80 ------~~~~~~i~~~~q~~~-~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 80 ------TEYRKKVGMVFQKPT-PFPMSIYDNV-AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred ------HHhhhhEEEEecCCc-cCcccHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 000000101111111 1111222222 211111111 11223456778899999853 24688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+||++|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++.++.+
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999998765 57999999999999999999999999999977543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=320.15 Aligned_cols=217 Identities=19% Similarity=0.264 Sum_probs=158.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ .|.+.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--~~~~~~~~- 80 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN--IYSPNLDV- 80 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE--ccccccCh-
Confidence 589999999999888999999999999999999999999999999999999887 4777765432 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC-hhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-ADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +.+..+++ .......... .......+.++++.+++.. +..++.+.+|||||
T Consensus 81 ------~~~~~~i~~v~q~~~~~-~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 81 ------VNLRKRVGMVFQQPNPF-PKSIFDNV-AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred ------HHhhceEEEEecCCccC-cCcHHHHH-hhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 00000011111111111 11222222 2111111111 1223455677788888742 35678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
+|||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++.++.+.
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999988765 579999999999999999999999999998876543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=314.25 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=168.0
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|.++|+++.|+. . +|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEe
Confidence 468999999953 3 799999999999999999999999999999999999999999998763 2578888
Q ss_pred cchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|... +....++.+++.... ......+.+.++++.+|+.... .+++.+|||||+|||+||||++.+|++||||
T Consensus 78 q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 78 QNYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred ecCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 8742 334567777664221 1112345677899999997544 4577999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+|||+.+++.+.+.|+++ +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 999999999999999998764 568999999999999999999999999997 467766554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=315.64 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=163.6
Q ss_pred EEEEEEEEEEcC------------------CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 400 IMVQNVSFRYSD------------------DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 400 l~~~~l~~~y~~------------------~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
|+++||++.|.. ....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 667777776642 12348999999999999999999999999999999999999999999998
Q ss_pred CceeEEeeccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 462 SHLRFARYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 462 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
+. +.++.|.. .+....++.+++.. .+........+..+++.+++... .+.++.+|||||+|||+||+||+
T Consensus 85 g~--~~~~~~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~Laral~ 159 (264)
T PRK13546 85 GE--VSVIAISA--GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-IYQPVKKYSSGMRAKLGFSINIT 159 (264)
T ss_pred CE--EeEEeccc--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-hcCCcccCCHHHHHHHHHHHHHh
Confidence 85 33444432 23344577766532 12111223345667888898754 45678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||+|++|++|+++ +.|+++++....
T Consensus 160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~~ 234 (264)
T PRK13546 160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPKY 234 (264)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHHh
Confidence 999999999999999999999999998765 569999999999999999999999999997 468887776544
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=313.91 Aligned_cols=201 Identities=29% Similarity=0.377 Sum_probs=168.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++|+++.|+. . .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~i~~l~~~~~~-~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRFGS-F-QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEECC-e-eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEe
Confidence 478999999963 3 4899999999999999999999999999999999999999999988752 2467888
Q ss_pred cchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|... +....++.+++.... ......+.+.++++.+++... .++++.+||+||+||++|||+|+.+|++||||
T Consensus 79 q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 79 QHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-GDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred cChh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 7653 334557777654221 111234567889999999754 45677999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+|||+.++..+.+.|.++ +.|||++||+++++..+||++++|++|+++ +.|+.+++.
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHH
Confidence 999999999999999999865 568999999999999999999999999997 467766654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=312.49 Aligned_cols=183 Identities=26% Similarity=0.378 Sum_probs=160.1
Q ss_pred eEEEEeEEEEeCC---------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC
Q psy10512 87 DVKIANFSITFHG---------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~~---------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~ 157 (629)
.++++||++.|.- ..+++||||+|++||++||||+||||||||-|+|.|++.|++|+|.+.+.. +.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~--i~--- 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD--IT--- 78 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc--hh---
Confidence 6899999999952 369999999999999999999999999999999999999999999774321 00
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
.+......+++.++|+.+|+..+..++++++|||||
T Consensus 79 --------------------------------------------~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 79 --------------------------------------------KLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred --------------------------------------------hcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 000223456789999999999889999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+||++|||||+.+|+++++|||||+||...+..+.++|.++ +.|.++||||+..+..+||||++|..|+|++.+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~ 194 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCH
Confidence 99999999999999999999999999999988888877644 78999999999999999999999999999998776
Q ss_pred HHHHH
Q psy10512 314 YEAFC 318 (629)
Q Consensus 314 ~~~~~ 318 (629)
.+.|.
T Consensus 195 ~~~~~ 199 (268)
T COG4608 195 EEVFS 199 (268)
T ss_pred HHHhh
Confidence 55554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=318.83 Aligned_cols=208 Identities=17% Similarity=0.238 Sum_probs=156.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CCCceEEEeecccCCCCCc--ch
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP----VPDHIDIFHLTREMPASDK--SA 160 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p----~~g~i~i~~~~~~~~~~~~--~~ 160 (629)
.|+++|++++| ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|++.+.+.. +..... ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~--i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP--VAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee--ccccccccce
Confidence 59999999999 66899999999999999999999999999999999999998 88988775432 111000 00
Q ss_pred hhhhhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch--hhhcccCCCChHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE--MQQKKTKDFSGGW 237 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSGGq 237 (629)
+.++. ++.. .+.+..+........... ......+.++.++++.+|+... ..++.+.+|||||
T Consensus 81 i~~v~-------------q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 81 IATIM-------------QNPRSAFNPLHTMHTHARETCLA--LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGM 145 (254)
T ss_pred EEEEe-------------cCCccccCccccHHHHHHHHHHH--cCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHH
Confidence 11111 1100 011111111111111011 1111234678889999999642 4688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
+|||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+|||+++++..+||++++|++|+++..+.
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999888654 6799999999999999999999999999987643
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=332.78 Aligned_cols=195 Identities=25% Similarity=0.309 Sum_probs=163.6
Q ss_pred EEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------eeEEe
Q psy10512 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------LRFAR 468 (629)
Q Consensus 404 ~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~~~~ 468 (629)
||++.|++ . .+ ++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999953 3 35 999999999999999999999999999999999999999988652 23678
Q ss_pred eccchhcccCCCCCHHHHHhhcCC---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFP---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
++|+.. +...+|+.+++..... .....+++.++++.+||.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGqkqRvalAraL~~~p~lllLD 156 (354)
T TIGR02142 80 VFQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL-GRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156 (354)
T ss_pred EecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 888753 4445788887653221 112234678999999997644 5678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 220 (354)
T TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVW 220 (354)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHh
Confidence 999999999999999998765 468999999999999999999999999997 467776654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=320.14 Aligned_cols=204 Identities=19% Similarity=0.258 Sum_probs=165.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 22 ~~~l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE-D-HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC-c-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 468999999999963 3 48999999999999999999999999999999999997 69999988763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--C---CCh-hhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--F---PEV-KDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~-~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|+.. +.. .++.+++... . ... .....+.++++.+++.. .....++.+|||||||||
T Consensus 100 ~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 100 VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 24788888753 222 4777766421 1 111 11234566677775421 123457789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~ 254 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKIF 254 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 4689999999999999999999999999974 57766653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=319.05 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=157.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCC-Ccch
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPAS-DKSA 160 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~-~~~~ 160 (629)
.|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+| ++|++.+.+.. +... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--~~~~~~~~- 79 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED--IYGNIDVA- 79 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE--cccccchH-
Confidence 58999999999988999999999999999999999999999999999999886 47777665432 1100 000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC-hhhHHHHHHHHHHhCCCCc---hhhhcccCCCChH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-ADTAEARAANILHGLGFTK---EMQQKKTKDFSGG 236 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 236 (629)
..+..+..+.++...+ +.+..+++ .......... .....+++.++++.+|+.. +..++++.+||||
T Consensus 80 --------~~~~~i~~~~q~~~~~-~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 80 --------DLRIKVGMVFQKPNPF-PMSIYENV-AYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred --------HHHhheeEEecCCCcC-cccHHHHH-HhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 0001111111111111 11222222 1111111111 1223456777888888743 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+|||+++++..+||++++|++|+++..+.
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998876 4799999999999999999999999999997653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=310.84 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=155.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
++++|+++.|+. ++.|+||+|++|++++|+||||||||||+++|+|+.+|+.|++.+.+.. +..... .
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~--~------ 68 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS--HTGLAP--Y------ 68 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--cccCCh--h------
Confidence 468999999974 5789999999999999999999999999999999999999998875432 111000 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
+..+..+.++...++..+..+++...+.. ........+.++.++++.+|+. +..++.+.+|||||+||++|||||
T Consensus 69 ---~~~i~~v~q~~~~~~~~t~~en~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 69 ---QRPVSMLFQENNLFAHLTVRQNIGLGLHP-GLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred ---ccceEEEeccCccCCCCcHHHHHHhHhhc-cCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHH
Confidence 00000111111111112222332211111 0011122345678899999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++++.+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999999999999999999888653 679999999999999999999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=324.43 Aligned_cols=213 Identities=16% Similarity=0.237 Sum_probs=159.4
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.+.+.. +.......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--i~~~~~~~--- 78 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL--LTAENVWN--- 78 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE--CCcCCHHH---
Confidence 5999999999974 359999999999999999999999999999999999999999999875432 11100000
Q ss_pred hhhchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.+..+..+.++.. .....+..+++ ...............+++..+++.+|+. +..++++.+|||||+|||+
T Consensus 79 ------~~~~i~~v~q~~~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 ------LRRKIGMVFQNPDNQFVGATVEDDV-AFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVA 150 (277)
T ss_pred ------HhcceEEEEECHHHhhccCCHHHHH-HhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 0000100111100 01111222222 1111111122333446788999999996 5788999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|++++.+..
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999988644 689999999999997 6999999999999876543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=314.62 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=149.1
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|++.+.+.. +......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~--~~~~~~~----- 74 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD--IRQLDPA----- 74 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE--hHHCCHH-----
Confidence 3889999999975 569999999999999999999999999999999999999999998775421 1100000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcc-----------cCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKK-----------TKDF 233 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~-----------~~~L 233 (629)
..+..+....+... ..+ .+..++..... . ......+.++++.+++. +..++. +.+|
T Consensus 75 ----~~~~~i~~~~q~~~-~~~-~tv~e~l~~~~--~----~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 75 ----DLRRNIGYVPQDVT-LFY-GTLRDNITLGA--P----LADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGL 141 (220)
T ss_pred ----HHHhhEEEeCCCCc-ccc-chHHHHhhcCC--C----CCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccC
Confidence 00000000011100 001 11111111110 0 01123556778888885 444543 4699
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||++|||||+.+|++|||||||++||+.++.++++.|+++. .|||+||||++++ .+||++++|++|+++.+
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999998763 6999999999987 69999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=313.70 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=152.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
+.+ ||+|+|+++.+ |+||+|++ ++++|+||||||||||+++|+|+++|++|++.+.+.. +....... ..
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~-----~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV--LFDSRKKI-----NL 70 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe--cccccchh-----hh
Confidence 344 99999999876 99999999 9999999999999999999999999999998775432 11000000 00
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
...+..+..+.+....+ +..+..++...... .........++.++++.+|+. ...++++.+||||||||++|||||
T Consensus 71 ~~~~~~i~~~~q~~~~~-~~~t~~~~l~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 PPQQRKIGLVFQQYALF-PHLNVRENLAFGLK--RKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhHhhcEEEEecCCccC-CCCCHHHHHHHHHh--hCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHH
Confidence 00000011111111111 11122222221111 111223345788899999996 567889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999988654 67999999999999999999999999999754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=304.68 Aligned_cols=174 Identities=31% Similarity=0.500 Sum_probs=144.1
Q ss_pred EEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCC
Q psy10512 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480 (629)
Q Consensus 401 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 480 (629)
+++|+++.|+. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++... ..
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~-~~------------ 65 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-AS------------ 65 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-Cc------------
Confidence 47899999964 3489999999999999999999999999999999999999999999886421 00
Q ss_pred CCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy10512 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560 (629)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~ 560 (629)
...... .... ..+.++++.+|+.... .+++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.
T Consensus 66 ~~~~~~-~~~i------~~~~q~l~~~gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 66 LSPKEL-ARKI------AYVPQALELLGLAHLA-DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred CCHHHH-HHHH------hHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 011000 0000 0111288899997544 4577999999999999999999999999999999999999999999
Q ss_pred HHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 561 DAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 561 ~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+.|.++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999775 4589999999999999999999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=312.75 Aligned_cols=192 Identities=23% Similarity=0.355 Sum_probs=157.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 479 (629)
+.+++++++|+. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++... ...... ..+..
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~~~~~~--~~~~~ 97 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-SLLGLG--GGFNP 97 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc-hhhccc--ccCCC
Confidence 778999999964 3589999999999999999999999999999999999999999999987531 111111 12334
Q ss_pred CCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 480 DISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 480 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~ 554 (629)
..|+.+++... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 56777765321 11112234567889999997544 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 555 TIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 555 ~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
++..+.+.|.++ +.|||+||||.+++..+||++++|++|+++.
T Consensus 177 ~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999998775 4689999999999999999999999999864
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=320.12 Aligned_cols=221 Identities=22% Similarity=0.283 Sum_probs=159.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV--P---VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p---~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+.. | ++|+|.+.+........+....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 5899999999998889999999999999999999999999999999999864 4 3688776543211000000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC-hhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-ADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
+..+..+.++...+ +. +..++........... .+.....+.++++.+++. .+..++++.+|||||
T Consensus 85 ---------~~~i~~~~q~~~~~-~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 85 ---------RKQVGMVFQQPNPF-PF-SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQ 153 (252)
T ss_pred ---------cCeEEEEECCCccC-CC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHH
Confidence 00000001110111 11 2222222111111111 122234566778888763 235678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++.++.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998766 4799999999999999999999999999999887766
Q ss_pred HHH
Q psy10512 316 AFC 318 (629)
Q Consensus 316 ~~~ 318 (629)
.+.
T Consensus 234 ~~~ 236 (252)
T PRK14255 234 MFL 236 (252)
T ss_pred Hhc
Confidence 553
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=324.71 Aligned_cols=216 Identities=21% Similarity=0.238 Sum_probs=158.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|++..+|+|+||+|.+|++++|+|||||||||||++|+|+.. |+.|+|.+.+.. +.......
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~--i~~~~~~~- 115 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED--IYGKFTDE- 115 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE--hhhcccch-
Confidence 5999999999998889999999999999999999999999999999999854 478888765422 11000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCC---chhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFT---KEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +. +..++.......... .......++.++++.+|+. .+..++++.+|||||
T Consensus 116 ------~~~~~~i~~v~q~~~l~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 116 ------VLLRKKIGMVFQKPNPF-PK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred ------HHhhhcEEEECCCCCCC-cc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 00000111111111111 12 222222221111111 1122345677888888874 245678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++..+..
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999876 46999999999999999999999999999877543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=335.15 Aligned_cols=216 Identities=21% Similarity=0.272 Sum_probs=162.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecc--cCCCCCcchhhhhhhch
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR--EMPASDKSALTCVMEVD 168 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~ 168 (629)
.++.+.||...+|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.+.+... ++...+...+.
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~------ 101 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLR------ 101 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHH------
Confidence 3556788888999999999999999999999999999999999999999999998864321 11110000000
Q ss_pred HHH-HHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 169 EER-VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+ ..+.++++....++..+..+++ .+...+..+...+...++.++++.+||. +..++++.+|||||||||+|||||
T Consensus 102 ~~r~~~i~~vfQ~~~l~p~~Tv~eNi-~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 102 RLRTHRVSMVFQKFALMPWLTVEENV-AFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HHhcCCEEEEECCCcCCCCCcHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 000 0111112222222222333333 2222222334445567889999999996 578999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~ 314 (629)
+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++..+.+.
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ 250 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999988653 689999999999999999999999999999876543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=315.94 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=153.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|++.+.+.. +......
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~------- 77 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED--ISTLKPE------- 77 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE--cCcCCHH-------
Confidence 5999999999998899999999999999999999999999999999999999999999875432 1110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+... +.+. +..++......+.. ......++.++++.+|+.....++++.+|||||+|||+||||
T Consensus 78 --~~~~~i~~~~q~~~-l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 78 --IYRQQVSYCAQTPT-LFGD-TVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred --HHHhccEEEecccc-cccc-cHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 00001111111111 1111 22222221111111 111235677899999996456789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEc--CCeE
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLD--KRKL 307 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~--~G~i 307 (629)
|+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++. .||++++|+ .|+|
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM 217 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH
Confidence 99999999999999999999999999988764 679999999999996 699999996 4444
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.53 Aligned_cols=201 Identities=28% Similarity=0.350 Sum_probs=158.6
Q ss_pred EEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 400 IMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
|+++|+++.|+.. ..++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 234899999999999999999999999999999999999999999998872 2478
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHH---------c--CCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR---------Y--GLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~--gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
|++|... +. ..++.+++...... .....+...++. + ++.... ..++.+|||||+|||+|||||+
T Consensus 81 ~~~q~~~--~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 81 LVSQEPV--LF-DGTIAENIRYGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred EECCchh--hh-hhhHHHHhhccCCC-CCHHHHHHHHHHcChHHHHHhhccccceee-ccCCccCCHHHHHHHHHHHHHh
Confidence 8888753 22 24777776432211 111222233332 2 333222 3456899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||+|||+.+++.+.+.|.++ +.+||++|||++++. +||++++|++|+++ +.|+.+++..
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA 226 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence 999999999999999999999999999876 458999999999997 89999999999996 4677666543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=314.05 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=157.0
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC----CccEEEECCc---------eeEEeeccchhcccCCCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SVGMVRKNSH---------LRFARYHQHLHELLDLDIS 482 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~ 482 (629)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..++|++|+....+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 8999998773 2578888875323444456
Q ss_pred HHHHHhh-----cCCChhhHHHHHHHHHHcCCCC--cccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 483 PLDYMLQ-----SFPEVKDREEMRKIIGRYGLTG--RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555 (629)
Q Consensus 483 ~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~ 555 (629)
+.+++.. ........+.+.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 6554321 1111123456788999999973 23456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 556 IDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 556 ~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+..+.+.|.++ +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999988764 468999999999999999999999999997 467776654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=319.00 Aligned_cols=205 Identities=20% Similarity=0.182 Sum_probs=166.3
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc-------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH------- 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~------- 463 (629)
++++|+++|++++|+. ..+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 17 ~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 3568999999999963 3489999999999999999999999999999999999863 6899988762
Q ss_pred ------eeEEeeccchhcccCCCCCHHHHHhhcC--C--ChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ------LRFARYHQHLHELLDLDISPLDYMLQSF--P--EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|+.. +.. .++.+++.... . .....+.+..+++.+++.. ....+++.+|||||+|||+
T Consensus 95 ~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred hhHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 24778888753 222 36777654311 0 1112344567788888731 2234577999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEe---------CCEEEEec
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICE---------NGKVTKWE 599 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~ 599 (629)
|||||+.+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||++++..+||++++|+ +|+++ ..
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~ 250 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EF 250 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-Ee
Confidence 999999999999999999999999999999999887 4689999999999999999999998 79997 46
Q ss_pred CCHHHHH
Q psy10512 600 GNILDYK 606 (629)
Q Consensus 600 g~~~~~~ 606 (629)
|+..++.
T Consensus 251 g~~~~~~ 257 (274)
T PRK14265 251 SPTEQMF 257 (274)
T ss_pred CCHHHHH
Confidence 8876653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=315.21 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=158.7
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CCCccEEEECCc------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TPSVGMVRKNSH------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~ 464 (629)
+|+++||++.|++ . .+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++. .
T Consensus 1 ~i~~~nl~~~~~~-~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVED-K-AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCC-e-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 4789999999963 3 4899999999999999999999999999999999995 699999998763 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhh------cCCC------hhhHHHHHHHHHHcCCCCcccccCcC-cCChhHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQ------SFPE------VKDREEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRVVF 531 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~l 531 (629)
.++|++|.... ....+...+... .... ......+.++++.+++......+++. +|||||||||+|
T Consensus 79 ~i~~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVE--IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchh--ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 36777776431 112222222110 0000 01134567788999996433445554 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~ 232 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTL 232 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHH
Confidence 99999999999999999999999999999988765 46899999999999887 8999999999997 5787663
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=315.30 Aligned_cols=202 Identities=18% Similarity=0.258 Sum_probs=165.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH---------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 463 (629)
+|+++|+++.|+. ..+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 6899999999963 3489999999999999999999999999999999999986 5999988762
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhcC-----CC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQSF-----PE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~lA 532 (629)
..++|++|... +. ..++.+++.... .. ....+.+.++++.+++.. .....++.+|||||+|||+||
T Consensus 81 ~~~~i~~~~q~~~--~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 81 LRIKVGMVFQKPN--PF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHhheeEEecCCC--cC-cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 13678887753 22 257777664221 11 112345667788888743 123457789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVIF 232 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999877 4689999999999999999999999999974 67766653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=321.47 Aligned_cols=224 Identities=19% Similarity=0.267 Sum_probs=159.6
Q ss_pred cCCCceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCC
Q psy10512 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPA 155 (629)
Q Consensus 81 ~~~~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~ 155 (629)
..|...+|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+..| ..|++.+.+. ++..
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~l~~ 91 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR--NIYD 91 (274)
T ss_pred cCCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE--eccc
Confidence 34445579999999999988899999999999999999999999999999999999764 4677766442 2110
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC---chhhhcccCC
Q psy10512 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT---KEMQQKKTKD 232 (629)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~ 232 (629)
..... ...+..+..+.++...+ +. +..++........... ......+.++++.+++. .+..++++.+
T Consensus 92 ~~~~~-------~~~~~~i~~v~q~~~l~-~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 161 (274)
T PRK14265 92 SQINS-------VKLRRQVGMVFQRPNPF-PK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTA 161 (274)
T ss_pred ccchh-------HHHhhcEEEEccCCccc-cc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCccc
Confidence 00000 00000011111111111 11 1222211111111111 12234466778888763 2346788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEc-------
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLD------- 303 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~------- 303 (629)
|||||+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999876 5799999999999999999999997
Q ss_pred --CCeEEEEcCcHHH
Q psy10512 304 --KRKLKYYGGNYEA 316 (629)
Q Consensus 304 --~G~i~~~~g~~~~ 316 (629)
+|++++++.+.+.
T Consensus 242 ~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 242 KRRGKLVEFSPTEQM 256 (274)
T ss_pred ccCceEEEeCCHHHH
Confidence 7999987655443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=318.25 Aligned_cols=203 Identities=19% Similarity=0.200 Sum_probs=165.3
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~--------- 463 (629)
++|+++||++.|+. . .+|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.+++.
T Consensus 9 ~~l~i~~v~~~~~~-~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 9 TVLRTENLNVYYGS-F-LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred eEEEEeeeEEEECC-E-EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 58999999999963 3 48999999999999999999999999999999999986 48999998763
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC--C--ChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF--P--EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~lA 532 (629)
..++|++|+.. +.. .++.+++.... . .....+.+..+++.+++.. .....++.+|||||+|||+||
T Consensus 87 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 13788888753 222 37777664321 1 1122345667788888742 123457789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEe---------CCEEEEecCC
Q psy10512 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICE---------NGKVTKWEGN 601 (629)
Q Consensus 533 ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~ 601 (629)
|||+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|+ +|+++ +.|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence 9999999999999999999999999999999876 3689999999999999999999998 79997 5677
Q ss_pred HHHHH
Q psy10512 602 ILDYK 606 (629)
Q Consensus 602 ~~~~~ 606 (629)
.+++.
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 76663
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=315.98 Aligned_cols=203 Identities=19% Similarity=0.271 Sum_probs=163.9
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC--C---CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT--P---SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~-------- 463 (629)
+++|+++||++.|+. ..+|+++||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 468999999999963 348999999999999999999999999999999999975 5 5899988763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--C---CCh-hhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--F---PEV-KDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~-~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|+.. +.. .++.+++... . ... ...+.+..+++.+++.. .....++.+|||||+|||
T Consensus 81 ~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 81 VVQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HHHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 24778888753 222 4777665421 1 111 11345667788887642 223457799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+..+.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE-FADTKQM 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999999876 4689999999999999999999999999985 4555443
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=319.73 Aligned_cols=214 Identities=20% Similarity=0.284 Sum_probs=156.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCCceEEEeeccc-CCCCCcchhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR--EVPVPDHIDIFHLTRE-MPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~--~~p~~g~i~i~~~~~~-~~~~~~~~~~~ 163 (629)
+|+++||++.|+++.+|+|+||+|++|+++||+|+||||||||+++|+|+ +.|+.|++.+.+.... ..........
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~- 85 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG- 85 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee-
Confidence 59999999999988899999999999999999999999999999999998 5788999887543211 0000000000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhh-------hhccChhhHHHHHHHHHHhCCCCchhhhcccC-CCCh
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR-------LDDISADTAEARAANILHGLGFTKEMQQKKTK-DFSG 235 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSG 235 (629)
+..+ .+....+ +..+..++...... ...........++.++|+.+|+.....++++. .|||
T Consensus 86 ~~~~----------~q~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 154 (252)
T CHL00131 86 IFLA----------FQYPIEI-PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG 154 (252)
T ss_pred EEEE----------ecccccc-ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH
Confidence 0000 0000000 01111111111100 00111122345678899999996445677777 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEEc
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYYG 311 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~~ 311 (629)
||+|||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+ ||++++|++|++++.+
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999999988765 68999999999999887 9999999999998765
Q ss_pred C
Q psy10512 312 G 312 (629)
Q Consensus 312 g 312 (629)
.
T Consensus 235 ~ 235 (252)
T CHL00131 235 D 235 (252)
T ss_pred C
Confidence 3
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=309.87 Aligned_cols=193 Identities=27% Similarity=0.385 Sum_probs=160.5
Q ss_pred eEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++|+++.|+++ ...+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999642 135899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc--C-C---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS--F-P---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
..++|++|+.. +....++.+++... + . .......+.++++.+|+.... .+++.+|||||+||++|||+|+
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-DYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHh
Confidence 24788888753 33446777655321 1 1 112245678899999997544 4577999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++.+ .+||+|++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999998765 57899999999965 79999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=308.93 Aligned_cols=187 Identities=23% Similarity=0.361 Sum_probs=157.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEe
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFAR 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~ 468 (629)
+|+++|+++.|+. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 4789999999963 348999999999999999999999999999999999999999999987632 3667
Q ss_pred eccchhcccCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
++|... +....++.+++.... ......+.+.++++.+|+.+.. ++++.+|||||+|||+|||||+.+|++|||||
T Consensus 79 ~~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDE 155 (204)
T PRK13538 79 LGHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155 (204)
T ss_pred eCCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 766532 344567877764321 1112446788899999997543 56789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEE
Q psy10512 547 PTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWIC 590 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l 590 (629)
||++||+.+++.+.+.|.++ +.|||+||||.+++..+.+|++++
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999876 578999999999999988888876
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=320.18 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=152.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||++.|+++.+|+++||+|++|++++|+|||||||||||++|+|+.+|++|++.+... ..+.++.+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---------~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------LRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc---------cCEEEecc
Confidence 599999999999888999999999999999999999999999999999999999998876421 00001100
Q ss_pred chHHHHHHHHHHHHHhccCC-hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACED-DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.. ..... ..+...+... .......++.++++.+|+. +..++++.+|||||+|||+|||
T Consensus 75 ~~-------------~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 75 KL-------------YLDTTLPLTVNRFLRL-------RPGTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred cc-------------ccccccChhHHHHHhc-------cccccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHH
Confidence 00 00000 0011111100 0011134577899999996 5678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|++|||||||++||+.++.++++.|.++ +.|||+||||++++..+||+|++|++ +++..+.
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~ 203 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGT 203 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCC
Confidence 999999999999999999999999999988653 68999999999999999999999975 6776643
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=318.91 Aligned_cols=226 Identities=21% Similarity=0.278 Sum_probs=161.7
Q ss_pred CCCceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCC
Q psy10512 82 HPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPAS 156 (629)
Q Consensus 82 ~~~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~ 156 (629)
++.+..|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+..| ++|++.+.+........
T Consensus 11 ~~~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred cCCCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 4455679999999999988999999999999999999999999999999999999875 56777765422111000
Q ss_pred CcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccCh-hhHHHHHHHHHHhCCCCc---hhhhcccCC
Q psy10512 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA-DTAEARAANILHGLGFTK---EMQQKKTKD 232 (629)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~ 232 (629)
.... ...+..+....++...+ +. +..++............ ...++++.++++.+++.. +..++.+.+
T Consensus 91 ~~~~-------~~~~~~i~~~~q~~~~~-~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 161 (265)
T PRK14252 91 EVDP-------IEVRMRISMVFQKPNPF-PK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFN 161 (265)
T ss_pred ccCH-------HHHhccEEEEccCCcCC-cc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCccc
Confidence 0000 00000010111111111 11 22222221111111111 122456777888887742 356788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++.+
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 47999999999999999999999999999988
Q ss_pred cCcHHH
Q psy10512 311 GGNYEA 316 (629)
Q Consensus 311 ~g~~~~ 316 (629)
+.+.+.
T Consensus 242 g~~~~~ 247 (265)
T PRK14252 242 GATDTI 247 (265)
T ss_pred CCHHHH
Confidence 665443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=347.51 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=166.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
|+|+++|+++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 58999999999953 34899999999999999999999999999999999999999999998762 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC--------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF--------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
++|++|... +....++.+++.... ......+++.++++.+|+.... ++++.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 81 VAIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred EEEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-CCchhhCCHHHHHHHHHHHHHHh
Confidence 788888753 345567877765321 0112245678899999997543 56789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999998865 4689999999999999999999999999974
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=315.42 Aligned_cols=201 Identities=21% Similarity=0.264 Sum_probs=163.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc-----------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH----------- 463 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~----------- 463 (629)
-+++||++.|++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+++.
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999953 348999999999999999999999999999999999986 47999998762
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc--CCC-----hhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS--FPE-----VKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... +.. .++.+++... ... ....+.+.++++.+|+... ...+++.+|||||||||+|
T Consensus 84 ~~~~i~~v~q~~~--~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 84 LRAKVGMVFQKPN--PFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred HhhhEEEEecCcc--ccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 13778888753 222 3666665321 111 1223456788999999641 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIF 236 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999999999876 468999999999999999999999999997 467766653
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=333.32 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=166.3
Q ss_pred CCeEEEEEEEEEEcCCC-CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhc
Q psy10512 397 PPVIMVQNVSFRYSDDG-PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~ 475 (629)
.++++++||++.|+.+. ..+|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.+++.... .... .
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~--i~~~--~ 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL--IAIS--S 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee--EEec--c
Confidence 46899999999996532 34899999999999999999999999999999999999999999999875421 1111 1
Q ss_pred ccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 476 LLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 476 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
.+....++.+++.. ........+.+..+++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-d~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 22334577776532 111112234566789999997544 567899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 551 LDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 551 LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+++++..
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~-~G~~~el~~ 232 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE-YGDIKEVVD 232 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999776 5689999999999999999999999999974 577655443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=314.33 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=165.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-----ccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-----VGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~--------- 463 (629)
++|+++|+++.|+. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 57899999999963 34899999999999999999999999999999999999997 699987652
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC-----CC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF-----PE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +. ..++.+++.... .. ....+.+..+++.+++.. ....+++.+|||||+|||+
T Consensus 81 ~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 81 VNLRKRVGMVFQQPN--PF-PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred HHhhceEEEEecCCc--cC-cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 24788888753 22 237777664211 11 112345666788888742 1234577999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 234 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4689999999999999999999999999974 57776653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=315.70 Aligned_cols=203 Identities=24% Similarity=0.284 Sum_probs=165.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-----ccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-----VGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~--------- 463 (629)
++|+++|+++.|+. . .+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 6 ~~l~~~nl~~~~~~-~-~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT-Q-KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC-e-eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 37999999999953 2 4899999999999999999999999999999999999985 798887652
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhc-----C-CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQS-----F-PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +.. .++.+++... . +.....+.+.++++.+++.. ....+++.+|||||+|||+
T Consensus 84 ~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 84 NRLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred HHhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 13667777643 222 5777765421 1 11122345778899998743 1235677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC-----CEEEEecCC
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN-----GKVTKWEGN 601 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~-----G~i~~~~g~ 601 (629)
|||+|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++ |+++ ..|+
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~ 239 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGL 239 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCC
Confidence 999999999999999999999999999999998763 57899999999999999999999999 9997 4688
Q ss_pred HHHHH
Q psy10512 602 ILDYK 606 (629)
Q Consensus 602 ~~~~~ 606 (629)
++++.
T Consensus 240 ~~~~~ 244 (261)
T PRK14258 240 TKKIF 244 (261)
T ss_pred HHHHH
Confidence 77664
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=309.97 Aligned_cols=199 Identities=21% Similarity=0.250 Sum_probs=151.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+... .... .
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~--~~~~-~------- 70 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI--RRQR-D------- 70 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc--ccch-H-------
Confidence 37899999999998999999999999999999999999999999999999999999988754321 1000 0
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.++.... +..+..++......... .....++.++++.+|+. +..++++.+||||||||++||||
T Consensus 71 --~~~~~~~~~~~~~~~~-~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~a 143 (204)
T PRK13538 71 --EYHQDLLYLGHQPGIK-TELTALENLRFYQRLHG---PGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARL 143 (204)
T ss_pred --HhhhheEEeCCccccC-cCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHH
Confidence 0000010011111111 11122222222211111 12345788899999996 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+.+|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999998765 689999999999999988888776
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=317.77 Aligned_cols=204 Identities=23% Similarity=0.246 Sum_probs=167.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 23 ~~~l~~~nl~~~~~~-~-~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD-K-QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC-e-eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 458999999999963 3 489999999999999999999999999999999999884 8999988652
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--CCC----hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--FPE----VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +.. .++.+++... ... ....+.+.++++.+++.. ...+.++.+|||||+|||
T Consensus 101 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 101 VAELRRRVGMVFQRPN--PFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 24678887643 222 3777766422 111 112345778888888853 123456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 9999999999999999999999999999999999876 468999999999999999999999999997 467776653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.47 Aligned_cols=192 Identities=25% Similarity=0.341 Sum_probs=158.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+.....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 6899999999643334899999999999999999999999999999999999999999998763 24788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHccC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
++|... + ...++.+++... .. ...+++.++++.+++..... ..++..|||||+|||+|||||+.+
T Consensus 83 ~~q~~~--l-~~~tv~enl~~~-~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 83 IPQDPV--L-FSGTIRSNLDPF-GE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred ECCCCc--c-ccchHHHHhCcC-CC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 888754 2 234777776421 11 22345566677776643321 246789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
|++|||||||++||+.++..+.+.|.++ +.|||++|||.+++.. ||++++|++|+++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 9999999999999999999999999876 4689999999999975 99999999999974
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=312.16 Aligned_cols=200 Identities=25% Similarity=0.340 Sum_probs=159.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|+++.|+.+. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 46899999995333 3899999999999999999999999999999999999999999998763 23788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcC-----------CCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG-----------LTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
++|... .+ ..|+.+++...... .....+...+..++ +... ...++.+|||||||||+|||||+.
T Consensus 80 ~~q~~~-~~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 80 VPQDTV-LF--NDTIGYNIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTI-VGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred ECCCCh-hh--cchHHHHHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccch-hhcCCCcCCHHHHHHHHHHHHHhc
Confidence 888753 22 35777776543221 11222333333333 3222 234568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++.. ||++++|++|+++ ..|+.+++.+
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence 99999999999999999999999999776 4689999999999965 9999999999997 4677766544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=307.98 Aligned_cols=183 Identities=26% Similarity=0.370 Sum_probs=152.5
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce---------------eE
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL---------------RF 466 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------------~~ 466 (629)
++||++.|++ . .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. .+
T Consensus 1 i~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD-K-IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC-E-EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 3 48999999999999999999999999999999999999999999887632 46
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|... +....++.+++... .......+.+.++++.+|+.... ++++.+|||||+||++|||||+.+|++
T Consensus 79 ~~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qr~~laral~~~p~l 155 (206)
T TIGR03608 79 GYLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-KQKIYELSGGEQQRVALARAILKDPPL 155 (206)
T ss_pred eEEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 77877653 33456777765321 11112345678899999997544 457799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEE
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWIC 590 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l 590 (629)
|||||||++||+.+++.+.+.|+++ +.+||++|||++++ .+||++++|
T Consensus 156 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 9999999999999999999999876 46899999999977 589999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=333.72 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=155.1
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHH
Q psy10512 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (629)
||+++|++..+ |+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +....... .....+
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~--i~~~~~~~-----~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRT--LFDSRKGI-----FLPPEK 74 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--CccCcccc-----ccchhh
Confidence 89999998764 9999999999999999999999999999999999999998875432 11000000 000000
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC
Q psy10512 172 VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251 (629)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 251 (629)
..+..+.+....++..+..+++ .+... .........++.++++.+||. +..++++.+|||||||||+|||||+.+|
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl-~~~~~--~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNL-RYGMK--RARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHH-HHHhh--ccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 0011111111111122222222 21111 111223345788999999996 5789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 252 HLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 252 ~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 216 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI 216 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCH
Confidence 999999999999999999999888654 67999999999999999999999999999877543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=318.46 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=158.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----CCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-----PDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-----~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|++++|++..+|+|+||+|++|++++|+|+|||||||||++|+|+++|. .|++.+.+. ++.......
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~--~i~~~~~~~- 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ--NIYERRVNL- 83 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE--Ehhccccch-
Confidence 599999999999888999999999999999999999999999999999999875 566655432 211000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +. +..++.......... ...+...++.++++.+++.. ...++++.+|||||
T Consensus 84 ------~~~~~~i~~~~q~~~l~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 84 ------NRLRRQVSMVHPKPNLF-PM-SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred ------HHhhccEEEEecCCccC-cc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 00000000001110111 11 222222211111111 12233456788999998742 35678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcC-----CeEE
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDK-----RKLK 308 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~-----G~i~ 308 (629)
+||++|||||+.+|+||||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999999998875 368999999999999999999999999 9998
Q ss_pred EEcCcHHH
Q psy10512 309 YYGGNYEA 316 (629)
Q Consensus 309 ~~~g~~~~ 316 (629)
..+.+.+.
T Consensus 236 ~~~~~~~~ 243 (261)
T PRK14258 236 EFGLTKKI 243 (261)
T ss_pred EeCCHHHH
Confidence 77554443
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=309.76 Aligned_cols=181 Identities=25% Similarity=0.370 Sum_probs=158.2
Q ss_pred CeEEEEEEEEEEcCCC-------CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeec
Q psy10512 398 PVIMVQNVSFRYSDDG-------PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~-------~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~ 470 (629)
++++++||++.|+... ..+++||||+|++||++||||.||||||||-|+|+|+++|++|+|.+.|....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~---- 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT---- 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh----
Confidence 5799999999996432 25899999999999999999999999999999999999999999999875300
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
... .....+++.++|+.+|+......+.+++|||||+||++|||||+.+|+++++||||++
T Consensus 79 -------~~~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 79 -------KLS------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred -------hcc------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhh
Confidence 000 2234567899999999987777778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 551 LDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 551 LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
||...+.++.++|.++ +.+.++||||+..+..+||||+||..|+|++. |+.
T Consensus 140 LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~-g~~ 194 (268)
T COG4608 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI-GPT 194 (268)
T ss_pred cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe-cCH
Confidence 9999999999988765 56899999999999999999999999999864 443
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=302.22 Aligned_cols=165 Identities=24% Similarity=0.393 Sum_probs=138.8
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------ 464 (629)
.++|+++|++++| +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 3579999999988 7999999999999999999999999999999999999999999987631
Q ss_pred eEEeeccchh-cccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 465 RFARYHQHLH-ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 465 ~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
.++|++|+.. ..+....++.+++.... .|||||+|||+|||||+.+|++||
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~----------------------------~LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSS----------------------------LLSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHh----------------------------hcCHHHHHHHHHHHHHccCCCEEE
Confidence 3556665431 11223334444332100 099999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 544 LDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
|||||++||+.+++.+.+.|.++ +.|+|++|||++++..+||++++|++|++
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999876 46899999999999999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=347.61 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=165.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
+|+++|+++.|+. . .+|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++.. .++
T Consensus 3 ~l~~~~l~~~~~~-~-~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD-T-KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC-e-eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 6899999999963 3 38999999999999999999999999999999999999999999876521 256
Q ss_pred eeccchhccc-C-----CCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 468 RYHQHLHELL-D-----LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 468 ~~~q~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
|++|.....+ . ...++.+++... ....+++.++++.+|+.+. .++++.+|||||||||+||+||+.+|++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE---VKDPARCEQLAQQFGITAL-LDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc---hhHHHHHHHHHHHcCCHhh-hhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 7776532111 0 123444443211 1234568899999999754 4568899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 222 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEI 222 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999876 468999999999999999999999999997 46777665
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=311.37 Aligned_cols=201 Identities=21% Similarity=0.230 Sum_probs=153.4
Q ss_pred ceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 85 ~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+.+|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|++.+.+... .....
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i--~~~~~------ 80 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA--TRGDR------ 80 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc--cchhh------
Confidence 3469999999999988899999999999999999999999999999999999999999988754321 10000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
+..+..+.+....+ +..+..++......+.. ...+..+.++++.+|+. +..++++.+|||||||||+||
T Consensus 81 ------~~~i~~~~q~~~~~-~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 ------SRFMAYLGHLPGLK-ADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred ------hhceEEeecCcccc-cCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHH
Confidence 00000011110111 11122222211111111 12345677899999997 557889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
|||+.+|+||||||||++||+.++.++.+.|.++ +.|+|++|||++++..+||++++|+.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999988765 78999999999999999999999863
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=346.86 Aligned_cols=201 Identities=20% Similarity=0.293 Sum_probs=167.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCc------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSH------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~------------~ 464 (629)
+|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++. .
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4789999999953 3489999999999999999999999999999999999997 7999998762 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
.++|++|... +....++.+++.... ......+++.++++.+|+.....++++.+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 79 GIVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred CEEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 4889998753 344567777764321 01122356788999999975444467899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .++..+
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 227 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA-TKDMST 227 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee-ecCccc
Confidence 9999999999999999999999999998765 5689999999999999999999999999974 455443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=334.88 Aligned_cols=201 Identities=19% Similarity=0.296 Sum_probs=158.6
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+++++||++.|++ +.+|+|+||+|++|+++||+|||||||||||++|+|+.+|++|++.+.+....+..
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~-------- 92 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAI-------- 92 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEe--------
Confidence 5999999999987 46999999999999999999999999999999999999999999987542110000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L 243 (629)
. .. ..+..+..+.......+.........+++.++++.+|+. +..++++.+|||||||||+|
T Consensus 93 ----~------------~~-l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 93 ----S------------SG-LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred ----c------------cc-cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHH
Confidence 0 00 001111111111111111222333445677899999996 56789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 244 AraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.++.+
T Consensus 155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~ 227 (549)
T PRK13545 155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI 227 (549)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999988665 68999999999999999999999999999987644
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=317.61 Aligned_cols=218 Identities=19% Similarity=0.303 Sum_probs=158.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++|+++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|++.+.+. .+.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~~~~~- 83 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ--NIYDPRINI- 83 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE--eccccccch-
Confidence 59999999999988899999999999999999999999999999999999875 3677776542 211000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhc-cChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.++...+ +. +..++......... ........++.++++.+|+.. +..++++.+|||||
T Consensus 84 ------~~~~~~i~~v~q~~~l~-~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 84 ------NRLRRQIGMVFQRPNPF-PM-SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred ------HhhhhheEEEecccccC-Cc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 00000111111111111 12 22222221111111 122233456778899998842 35678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEc-----CCeEEEE
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLD-----KRKLKYY 310 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~-----~G~i~~~ 310 (629)
+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|+ +|+++..
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999998765 4799999999999999999999997 5999987
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
+.+.+
T Consensus 236 ~~~~~ 240 (259)
T PRK14260 236 GVTTQ 240 (259)
T ss_pred CCHHH
Confidence 65443
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=322.44 Aligned_cols=210 Identities=20% Similarity=0.324 Sum_probs=155.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.|+++|++++|+ ++.+|+|+||+|++|+++||+|||||||||||++|+|+++|++|++.+.+........ ...+.++.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQ-KNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhc-cceEEEec
Confidence 499999999995 5789999999999999999999999999999999999999999998875432100000 00000110
Q ss_pred hchHHHHHHHHHHHHHhc-cCChhHHHHHHHH--Hhhhh--ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVA-CEDDESQEQLMDI--YDRLD--DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
++... ........++... +.... .........++.++++.+|+. +..++++.+||||||||
T Consensus 85 -------------q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 85 -------------QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKR 150 (272)
T ss_pred -------------cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHH
Confidence 00000 0000011111100 00000 011122345677899999996 56789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
++|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+++++ +|+++..+.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecC
Confidence 99999999999999999999999999999999998765 679999999999999999999877 899987654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.04 Aligned_cols=209 Identities=26% Similarity=0.368 Sum_probs=154.5
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
|+++|+++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|++.+.+... ........
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~-- 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL--YGASEKEL-- 77 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh--HhcCHhHH--
Confidence 789999999975 6799999999999999999999999999999999999999999988754321 10000000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+..+....+....+... +..++........ .....+...++.++++.+|+. +..++.+.+||||||||++
T Consensus 78 ----~~~~~~i~~~~q~~~~~~~~-t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 ----VQLRRNIGYIFQAHNLLGFL-TARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVA 151 (220)
T ss_pred ----HHHHhheEEEcCChhhcCCC-CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHH
Confidence 00000111111111111111 2222222221111 123334556788999999996 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||+++. .+||+|++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999999998888654 68999999999965 69999999999976
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=312.07 Aligned_cols=211 Identities=24% Similarity=0.293 Sum_probs=152.0
Q ss_pred eEEEEeEEEEeCC-------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecc--cCCCCC
Q psy10512 87 DVKIANFSITFHG-------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR--EMPASD 157 (629)
Q Consensus 87 ~i~i~nls~~y~~-------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~--~~~~~~ 157 (629)
+|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|+.|++.+.+.+. ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999963 4799999999999999999999999999999999999999999988753211 111000
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
...... ..+..+..+.+.....+. .+..++................+++.++++.+|+.....++++.+|||||
T Consensus 81 ~~~~~~-----~~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 81 PREVLE-----VRRKTIGYVSQFLRVIPR-VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHH-----HHhcceEEEecccccCCC-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 000000 000001111111111111 12222221111111122233456788899999997545678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+++.+.
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999988764 6799999999999999999999764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=316.84 Aligned_cols=215 Identities=20% Similarity=0.319 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcchhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
-+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+.. |+.|++.+.+.. +.......
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~~-- 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID--VYSVDTNV-- 81 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe--hHhcccch--
Confidence 468999999998899999999999999999999999999999999999976 357888765422 11000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc--ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
...+..+..+.+....+ +.+..+++ ......... ........+.++++.+|+.. ...++.+.+|||||
T Consensus 82 -----~~~~~~i~~v~q~~~~~-~~tv~~ni-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 82 -----VLLRAKVGMVFQKPNPF-PKSIYDNV-AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154 (251)
T ss_pred -----HHHhhhEEEEecCcccc-cCCHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence 00000111111111111 11222222 211111111 11233456778999999963 24577899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..+..
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999988765 57999999999999999999999999999876543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=314.61 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=166.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc---------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH--------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 463 (629)
++|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 47899999999963 3489999999999999999999999999999999999985 4899998753
Q ss_pred ----eeEEeeccchhcccCCCCCHHHHHhhcC------CChhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHHHHH
Q psy10512 464 ----LRFARYHQHLHELLDLDISPLDYMLQSF------PEVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVV 530 (629)
Q Consensus 464 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 530 (629)
..++|++|... +. ..++.+++.... +.....+.+.++++.+|+.. .....++.+|||||+|||+
T Consensus 84 ~~~~~~i~~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 84 NRLRRQIGMVFQRPN--PF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred HhhhhheEEEecccc--cC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 14778888753 22 267777764321 11122345678889998842 2234577899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEe-----CCEEEEecCCHH
Q psy10512 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICE-----NGKVTKWEGNIL 603 (629)
Q Consensus 531 lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~ 603 (629)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++ ..|+..
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~ 239 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTT 239 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHH
Confidence 999999999999999999999999999999999876 3689999999999999999999998 59997 467777
Q ss_pred HHH
Q psy10512 604 DYK 606 (629)
Q Consensus 604 ~~~ 606 (629)
++.
T Consensus 240 ~~~ 242 (259)
T PRK14260 240 QIF 242 (259)
T ss_pred HHh
Confidence 653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=309.27 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=148.1
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|+.|++.+.+.. +........ ...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~~-----~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE--TPPLNSKKA-----SKF 73 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE--ccccchhhH-----HHH
Confidence 4799999998899999999999999999999999999999999999999999998775432 110000000 000
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHcc
Q psy10512 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249 (629)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 249 (629)
.+..+....+....++.. +..++.................++.++++.+|+. +..++++.+|||||+||++|||||+.
T Consensus 74 ~~~~i~~~~q~~~~~~~~-t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFALIENE-TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhhccCC-cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 000011111111111111 2222222211111222334456788999999996 56788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
+|++|||||||++||+.++.++.+.|+++ +.|||+|||+++++ .+||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999998765 67999999999987 489999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=322.29 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=168.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 463 (629)
..+|+++|++++|.++...+|+|+||+|++|+++||+||||||||||+++|+|+.+ |++|+|.++|.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999996433458999999999999999999999999999999999986 57999987653
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--CCChhh----HHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--FPEVKD----REEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv 529 (629)
..++|++|.+. .+..|+.+++... +..... .+.+..+++.+++... ....++.+|||||||||
T Consensus 158 ~~~lr~~i~~v~q~~~---~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 158 SLELRTRIGMVFQKPT---PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred hHhhhccEEEEecCCc---cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 24788888754 2346887776521 111111 2235778888887421 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+|||+++++..+||+|++|++|+|++ .|++.++.
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~l~ 312 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKTIF 312 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999975 68887754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=304.73 Aligned_cols=185 Identities=26% Similarity=0.376 Sum_probs=157.2
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~~ 469 (629)
|+++||++.|+. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 478999999963 348999999999999999999999999999999999999999999987632 46777
Q ss_pred ccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
+|... +....++.+++...... ...+.+.++++.+|+.+.. ++++.+||||||||++|||||+.+|++|||||||+
T Consensus 79 ~q~~~--~~~~~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 79 GHAPG--IKTTLSVLENLRFWHAD-HSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred ccccc--cCCCcCHHHHHHhhccc-ccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 77642 33456787776432221 2456788999999997644 56789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEE
Q psy10512 550 HLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWIC 590 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l 590 (629)
|||+.+++.+.+.|.++ +.|+|+||||...+..+|++++++
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999765 578999999999999999999886
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=317.82 Aligned_cols=217 Identities=18% Similarity=0.277 Sum_probs=156.6
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~ 160 (629)
++|+++|++++|++.++|+|+||+|++|++++|+||||||||||+++|+|++. |++|++.+.+.. +.......
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~ 86 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN--LYAPDVDP 86 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE--ccccccCh
Confidence 36999999999998899999999999999999999999999999999999876 367887765422 11000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
. ..+..+..+.+....+ +. +..++........... ....+++..+++.+++.. ...++.+.+|||||
T Consensus 87 ~-------~~~~~i~~v~q~~~~~-~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 156 (264)
T PRK14243 87 V-------EVRRRIGMVFQKPNPF-PK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQ 156 (264)
T ss_pred H-------HHhhhEEEEccCCccc-cc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHH
Confidence 0 0000011111111111 11 2222221111111111 123345667788888742 24577899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEc---------CCe
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLD---------KRK 306 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~---------~G~ 306 (629)
+|||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|+ +|+
T Consensus 157 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999998766 4799999999999999999999998 799
Q ss_pred EEEEcCcH
Q psy10512 307 LKYYGGNY 314 (629)
Q Consensus 307 i~~~~g~~ 314 (629)
+++.+...
T Consensus 237 i~~~~~~~ 244 (264)
T PRK14243 237 LVEFDRTE 244 (264)
T ss_pred EEEeCCHH
Confidence 99775443
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=312.41 Aligned_cols=182 Identities=28% Similarity=0.345 Sum_probs=152.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------eEEeeccchhcccCCCCCHHHHHhhc
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------RFARYHQHLHELLDLDISPLDYMLQS 490 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~ 490 (629)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|... +....++.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 578999999999999999999999999999999999999999998742 2467787653 34456787775432
Q ss_pred ----CCC---hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10512 491 ----FPE---VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563 (629)
Q Consensus 491 ----~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l 563 (629)
... ....+.+.++++.+|+... .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHH-HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 111 1223457889999999754 35678999999999999999999999999999999999999999999998
Q ss_pred hhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCH
Q psy10512 564 NDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602 (629)
Q Consensus 564 ~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 602 (629)
.++ +.|||+||||++++..+||+|++|++|+++. .|+.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~ 199 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN-IGQI 199 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec-ccCc
Confidence 764 5689999999999999999999999999974 4543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=320.24 Aligned_cols=208 Identities=20% Similarity=0.232 Sum_probs=168.7
Q ss_pred CCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-----CCccEEEECCc----
Q psy10512 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-----PSVGMVRKNSH---- 463 (629)
Q Consensus 393 ~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~---- 463 (629)
+...+++|.++||++.|+. . .+|+++||+|.+|++++|+|+|||||||||++|+|+++ |++|+|.+++.
T Consensus 39 ~~~~~~~l~i~nl~~~~~~-~-~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 39 EFDGDAKLSVEDLDVYYGD-D-HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred ccCCCceEEEEEEEEEeCC-e-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3445668999999999964 3 48999999999999999999999999999999999986 68999998762
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhhcCC------------------ChhhHHHHHHHHHHcCCCC---cc
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQSFP------------------EVKDREEMRKIIGRYGLTG---RQ 513 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~gl~~---~~ 513 (629)
..++|++|... +. ..++.+++..... .....+.+..+++.+++.. ..
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPN--PF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred ccccHHHHhhceEEEccCCc--cc-cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 24778888753 22 2477776542110 0112455778899998842 12
Q ss_pred cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEE-EEE
Q psy10512 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEI-WIC 590 (629)
Q Consensus 514 ~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i-~~l 590 (629)
...++.+|||||+|||+|||||+.+|+||||||||+|||+.++..|.+.|+++ +.+||+||||++++..+||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34567899999999999999999999999999999999999999999999887 468999999999999999996 578
Q ss_pred eCCEEEEecCCHHHHH
Q psy10512 591 ENGKVTKWEGNILDYK 606 (629)
Q Consensus 591 ~~G~i~~~~g~~~~~~ 606 (629)
++|+++. .|+++++.
T Consensus 274 ~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 274 TGGELVE-YDDTDKIF 288 (305)
T ss_pred cCCEEEE-eCCHHHHH
Confidence 9999974 67776654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=346.19 Aligned_cols=204 Identities=28% Similarity=0.372 Sum_probs=167.5
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CCCccEEEECC---------------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TPSVGMVRKNS--------------- 462 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~--------------- 462 (629)
|+++|+++.|++ . .+|+++||+|.+|++++|+|||||||||||++|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG-K-EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC-e-EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 3 4899999999999999999999999999999999997 79999998751
Q ss_pred -----------------------------ceeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcC
Q psy10512 463 -----------------------------HLRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYG 508 (629)
Q Consensus 463 -----------------------------~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g 508 (629)
+..++|++|... .+....++.+++... .+.....+++.++++.+|
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 013677777522 123345776665421 111123456788999999
Q ss_pred CCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhc
Q psy10512 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVA 584 (629)
Q Consensus 509 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~ 584 (629)
|.... ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|
T Consensus 158 l~~~~-~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 158 LSHRI-THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred Chhhh-hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 97544 5578999999999999999999999999999999999999999998888765 568999999999999999
Q ss_pred CEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 585 EEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 585 d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
|+|++|++|+++ +.|+++++...
T Consensus 237 d~i~~l~~G~i~-~~g~~~~~~~~ 259 (520)
T TIGR03269 237 DKAIWLENGEIK-EEGTPDEVVAV 259 (520)
T ss_pred CEEEEEeCCEEe-eecCHHHHHHH
Confidence 999999999997 47888777554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=312.06 Aligned_cols=204 Identities=21% Similarity=0.220 Sum_probs=165.4
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|+++|+++.|++ . .+|+|+||+|++||+++|+||||||||||+++|+|++.| ++|+|.+++.
T Consensus 4 ~~~i~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGE-K-HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECC-e-eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 358999999999963 3 489999999999999999999999999999999999763 4899988752
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc--CC---C-hhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS--FP---E-VKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRV 529 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv 529 (629)
..++|++|... +.. .++.+++... .. . ....+.+.++++.+++... ...+++.+|||||+|||
T Consensus 82 ~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 82 VVALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence 13678888753 222 4777765421 10 1 1123456778888887421 23457789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||+.+|++|||||||+|||+.+++.+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHH
Confidence 9999999999999999999999999999999999876 468999999999999999999999999997 467776653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=310.25 Aligned_cols=194 Identities=26% Similarity=0.407 Sum_probs=158.6
Q ss_pred CCeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------e
Q psy10512 397 PPVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 464 (629)
.++|+++|+++.|++. ...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4689999999999642 224899999999999999999999999999999999999999999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcCCChh--------hHHHHHHHHHHc--CCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSFPEVK--------DREEMRKIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
.++|++|... .+ ..++.+++........ ....+.++++.+ |+.... ..++.+|||||+|||+||||
T Consensus 89 ~i~~~~q~~~-l~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPV-LF--ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEV-GEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccH-HH--hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHH
Confidence 4788888753 22 2477776643221110 011245677888 776543 45679999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
|+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++. .||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999876 358999999999996 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=287.52 Aligned_cols=144 Identities=45% Similarity=0.745 Sum_probs=135.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 479 (629)
|+++|+++.|++ . .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGG-K-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECC-c-eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc--------
Confidence 468999999964 3 489999999999999999999999999999999999999999999988666677665
Q ss_pred CCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
||+||+||++|||||+.+|++|||||||++||+.++..+
T Consensus 71 -----------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l 109 (144)
T cd03221 71 -----------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109 (144)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
.+.|++++.++|++|||.+++..+||++++|++|+
T Consensus 110 ~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 110 EEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999988899999999999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=297.94 Aligned_cols=159 Identities=37% Similarity=0.560 Sum_probs=133.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~ 468 (629)
|+++|++++|+.....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999996432348999999999999999999999999999999999999999999988731 2445
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
++|... +.. .++.+++ |||||+|||+|||||+.+|++|||||||
T Consensus 81 ~~q~~~--~~~-~tv~~~l---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 81 LPQDDE--LFS-GSIAENI---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred ECCCCc--ccc-CcHHHHC---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 444321 111 1222221 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 549 NHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++||+.++..+.+.|.++ +.|||+||||.+++ .+||++++|++|++
T Consensus 125 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 125 SHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 999999999999999775 45899999999998 47999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=293.08 Aligned_cols=158 Identities=25% Similarity=0.394 Sum_probs=132.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 479 (629)
|+++|+++.|++ . .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++... .
T Consensus 1 l~~~~l~~~~~~-~-~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~-~------------ 65 (163)
T cd03216 1 LELRGITKRFGG-V-KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV-S------------ 65 (163)
T ss_pred CEEEEEEEEECC-e-EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC-C------------
Confidence 478999999963 3 489999999999999999999999999999999999999999999876310 0
Q ss_pred CCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
.....+. .+ ..+++ +.+|||||+|||+||||++.+|++|||||||++||+.+++.+
T Consensus 66 ~~~~~~~-------------~~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l 121 (163)
T cd03216 66 FASPRDA-------------RR---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121 (163)
T ss_pred cCCHHHH-------------Hh---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 0000000 00 00111 112999999999999999999999999999999999999999
Q ss_pred HHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 560 ADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 560 ~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
.+.|+++ +.|||++|||++++..+||++++|++|+++
T Consensus 122 ~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 122 FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999876 468999999999999999999999999986
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=315.33 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=157.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-----~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+..| +.|++.+.+. .+........
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE--NIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE--Eccccccchh
Confidence 69999999999988999999999999999999999999999999999998753 3677766432 2211000000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhcc-ChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI-SADTAEARAANILHGLGFTK---EMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 237 (629)
..+..+....+....+ +. +..++..+....... .....+..+.++++.+++.. ...++.+.+|||||
T Consensus 84 -------~~~~~i~~~~q~~~~~-~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 84 -------ALRRKIGMVFQRPNPF-PK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred -------hhhceEEEEecCCccC-cc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 0000000011111111 11 222222221111111 12233456778888888742 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||++|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||++|||++++..+||++++|++|+++..+..
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKT 232 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCH
Confidence 99999999999999999999999999999999999988765 47999999999999999999999999999876554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=303.46 Aligned_cols=199 Identities=29% Similarity=0.439 Sum_probs=166.6
Q ss_pred CCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------
Q psy10512 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------ 463 (629)
Q Consensus 396 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 463 (629)
..++|+++||++.|++ +.+|+|+||+|++||.++|+|||||||||||++++|.++|++|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 28 NEPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CcceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 3578999999999953 35999999999999999999999999999999999999999999987653
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhcC------C----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQSF------P----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
.++|++...+...+....++.+.+..++ + .....+++..+++.+|+.+ ..+++..+||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHHH
Confidence 2467776555444444444544433221 1 2234567888999999986 456799999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----ceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFE-----GGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~-----~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||+.+|++|||||||+|||...++.+.+.|.++. .++|+|||..+++..+.++++.+.+|+++.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999998873 359999999999999999999999999973
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=308.76 Aligned_cols=196 Identities=21% Similarity=0.310 Sum_probs=161.7
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC---CCccEEEECCc--------ee
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT---PSVGMVRKNSH--------LR 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~--------~~ 465 (629)
++.++||+++|+..+ ..+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 567999999996542 458999999999999999999999999999999999999 99999998763 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc----CCC----hhhHHHHHH-HHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS----FPE----VKDREEMRK-IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~-~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
++|++|... +....|+.+++... .+. ......+.. +++.+++.... .+++.+|||||+|||+|||||+
T Consensus 83 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-GNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-cccccCcCHHHHHHHHHHHHHH
Confidence 788888743 33456777765421 111 011123444 88999987543 4577999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCH-HHHHhhcCEEEEEeCCEEEE
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDF-RLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~-~~~~~~~d~i~~l~~G~i~~ 597 (629)
.+|++|||||||+|||+.++..+.+.|.++ +.|+|++||+. +++..+||++++|++|+++.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999765 46899999998 68999999999999999974
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=296.23 Aligned_cols=160 Identities=29% Similarity=0.463 Sum_probs=136.4
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~~ 469 (629)
|+++|+++.|+. . .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 468999999963 3 48999999999999999999999999999999999999999999987742 34555
Q ss_pred ccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
+|... +....++.+++. |||||+|||+|||||+.+|++|||||||+
T Consensus 79 ~q~~~--~~~~~tv~~~~~--------------------------------LS~G~~qrv~laral~~~p~illlDEPt~ 124 (173)
T cd03230 79 PEEPS--LYENLTVRENLK--------------------------------LSGGMKQRLALAQALLHDPELLILDEPTS 124 (173)
T ss_pred ecCCc--cccCCcHHHHhh--------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 55532 122233333221 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 550 HLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
+||+.++..+.+.|.++ +.++|++|||.+++..+||++++|++|++
T Consensus 125 ~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 125 GLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999876 36899999999999999999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=309.41 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=147.4
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.|+++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|++.+.+.. +.......
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~--~~~~~~~~----- 74 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID--IRDISRKS----- 74 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEe--HHHcCHHH-----
Confidence 4899999999975 579999999999999999999999999999999999999999998775421 11000000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHH-----HHHHHHHhC--CCCchhhhcccCCCChHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA-----RAANILHGL--GFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~L~~l--gl~~~~~~~~~~~LSGGqr 238 (629)
.+..+.+..+....+ +. +..++...+.. ......... .+..+++.+ |+. ...++.+.+||||||
T Consensus 75 ----~~~~i~~~~q~~~~~-~~-tv~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~LS~G~~ 145 (229)
T cd03254 75 ----LRSMIGVVLQDTFLF-SG-TIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYD-TVLGENGGNLSQGER 145 (229)
T ss_pred ----HhhhEEEecCCchhh-hh-HHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc-CHhhcCCCcCCHHHH
Confidence 000000000000000 00 11111111100 000000000 122333333 443 234667899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+|||+++++. .||++++|++|+++.. ++++.
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~-~~~~~ 223 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEE-GTHDE 223 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe-CCHHH
Confidence 9999999999999999999999999999999999998776 479999999999996 5999999999999864 45544
Q ss_pred H
Q psy10512 317 F 317 (629)
Q Consensus 317 ~ 317 (629)
+
T Consensus 224 ~ 224 (229)
T cd03254 224 L 224 (229)
T ss_pred H
Confidence 3
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=296.85 Aligned_cols=164 Identities=31% Similarity=0.478 Sum_probs=138.2
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce----------eEEee
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------RFARY 469 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~~~~~ 469 (629)
|+++|+++.|+.....+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 47899999996432248999999999999999999999999999999999999999999998741 24555
Q ss_pred ccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
+|+.. +. ..++.+++ +.+|||||+|||+||||++.+|++|||||||+
T Consensus 81 ~q~~~--~~-~~tv~~~i------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 81 NQRPY--LF-DTTLRNNL------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred ccCCe--ee-cccHHHhh------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 55431 11 12222221 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 550 HLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+||+.+++.+.+.|.++ +.|||++|||.+++. .||++++|++|+++.
T Consensus 128 ~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 128 GLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999999999999876 568999999999996 699999999999863
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=294.56 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=132.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|+++++|+++||+|++||+++|+|||||||||||++|+|+++|++|++.+.+.. +...
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~--~~~~----------- 67 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE--VSFA----------- 67 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE--CCcC-----------
Confidence 478999999998899999999999999999999999999999999999999999998774321 1000
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
... . . .-..+++ +.+|||||+||++|||||
T Consensus 68 ~~~--------------------~-------------------~---~~~~i~~--------~~qLS~G~~qrl~laral 97 (163)
T cd03216 68 SPR--------------------D-------------------A---RRAGIAM--------VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CHH--------------------H-------------------H---HhcCeEE--------EEecCHHHHHHHHHHHHH
Confidence 000 0 0 0000111 112999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
+.+|++|||||||++||+.++..+.+.|+++ +.|+|++|||++++..+||++++|++|++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998765 5799999999999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=306.88 Aligned_cols=195 Identities=22% Similarity=0.281 Sum_probs=149.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++||++.|+++.+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|++.+.+... .... .
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~-~-------- 69 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL--DFQR-D-------- 69 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec--cccc-H--------
Confidence 4789999999988999999999999999999999999999999999999999999988754221 1000 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+..+..+.++....+. .+..++...+.. ....+++.++++.+|+. ...++++.+||||||||++|||||
T Consensus 70 -~~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral 140 (201)
T cd03231 70 -SIARGLLYLGHAPGIKTT-LSVLENLRFWHA------DHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLL 140 (201)
T ss_pred -HhhhheEEeccccccCCC-cCHHHHHHhhcc------cccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHH
Confidence 000011111111111111 122222221111 11245678899999996 467889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
+.+|++|||||||++||+.++.++.+.|.++ +.|+|+||||...+..+|++++.+
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999998765 689999999999999999999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=356.39 Aligned_cols=202 Identities=28% Similarity=0.428 Sum_probs=173.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+|+|++..+++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|. ..++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 58999999999644445999999999999999999999999999999999999999999999873 3589
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc----------CcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC----------PIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|+.. -++.|+.+++....+ .+.+++.++++..|+.+..... ....||||||||++|||||++
T Consensus 531 ~v~Q~~~---lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 531 VVLQNGR---LMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred EEccCCc---cCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999864 245688898875544 4567788888888876432211 125799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||++||+.+.+.+.+.|.+++.|+|+|||+++.+.. ||+|++|++|+|++ .|++++..+
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll~ 673 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELMA 673 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999988899999999999865 99999999999984 798877643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=314.31 Aligned_cols=199 Identities=24% Similarity=0.362 Sum_probs=165.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++|++++|+++...+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999996433458999999999999999999999999999999999998 7899999873 25788
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCc-----------CChhHHHHHHHHHHHcc
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ-----------LSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral~~ 537 (629)
++|... + +..|+.+++.. +.. ...+++.++++.+|+..... ..+.. |||||+|||+|||||+.
T Consensus 82 v~q~~~--l-f~~tv~~nl~~-~~~-~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 82 IPQKVF--I-FSGTFRKNLDP-YGK-WSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred ECCCcc--c-chhhHHHHhhh-ccC-CCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 888753 2 23477777632 111 23456788899999975443 34444 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||+.+...+.+.|.+. +.|||+||||++++.. ||||++|++|+++. .|+++++..
T Consensus 156 ~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 225 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ-YDSIQKLLN 225 (275)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee-cCCHHHHhh
Confidence 99999999999999999999999999865 4689999999999975 99999999999985 577766544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=309.12 Aligned_cols=204 Identities=22% Similarity=0.321 Sum_probs=154.2
Q ss_pred eEEEEeEEEEeCC--------------------eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 87 DVKIANFSITFHG--------------------CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 87 ~i~i~nls~~y~~--------------------~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
.|+++||++.|.. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3778888877732 34899999999999999999999999999999999999999999876
Q ss_pred EeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhh
Q psy10512 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226 (629)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 226 (629)
.+........ . ...+..+..++..................+..+++.+++. +..
T Consensus 84 ~g~~~~~~~~-~------------------------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 137 (264)
T PRK13546 84 NGEVSVIAIS-A------------------------GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-EFI 137 (264)
T ss_pred CCEEeEEecc-c------------------------CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhh
Confidence 5421000000 0 0000011111111110111122233344566788888986 567
Q ss_pred hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|+
T Consensus 138 ~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~ 217 (264)
T PRK13546 138 YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIE 217 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEE
Confidence 8899999999999999999999999999999999999999999999888654 6899999999999999999999999
Q ss_pred CCeEEEEcCcHHHH
Q psy10512 304 KRKLKYYGGNYEAF 317 (629)
Q Consensus 304 ~G~i~~~~g~~~~~ 317 (629)
+|+++..+ +.+.+
T Consensus 218 ~G~i~~~g-~~~~~ 230 (264)
T PRK13546 218 GGKLKDYG-ELDDV 230 (264)
T ss_pred CCEEEEeC-CHHHH
Confidence 99998764 44444
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=327.54 Aligned_cols=203 Identities=27% Similarity=0.408 Sum_probs=172.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
.++++||+|+|++..+++|+|+||++.+||.++|+|++|||||||+.+|+|.++|++|+|+.++.. .+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998766679999999999999999999999999999999999999999999998742 233
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccC----------cCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP----------IRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 537 (629)
.+.|..+ -++-|+.+++....+. ...+++.++++.+||.+.....| ...|||||+||++|||+|++
T Consensus 416 vl~Qr~h---lF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 416 VLTQRVH---LFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred hhccchH---HHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 3444432 1344677777666665 56788999999999875544332 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+++||||||.|||+.+.+++++.|.+. ++|+|+|||++..++ .||||++|++|+++ .+|++.+...
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkii-e~G~~~~Ll~ 561 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKII-EEGTHAELLA 561 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeee-ecCCHHhhhc
Confidence 99999999999999999999999998765 579999999999996 58999999999997 5898877654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=291.94 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=170.7
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEe----------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFAR---------- 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~---------- 468 (629)
||+++||+++|+. ..+++++|++|++|.+++|||||||||||||.+++.++++++|+|.++|..-..+
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 5789999999963 4589999999999999999999999999999999999999999999988532222
Q ss_pred -eccchhcccCCCCCHHHHHhhc-CC------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 469 -YHQHLHELLDLDISPLDYMLQS-FP------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 469 -~~q~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+.|.. .+...+|+.+.+..+ || ...++..+.++++.++|.+. .++...+||||||||+.+|+.++++.+
T Consensus 79 ILkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l-~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 79 ILKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL-SDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch-HHHhHHhcccchhhhhhhheeeeccCc
Confidence 23332 234556777765432 22 23567788999999999865 456889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
.++||||.|+||+...-.+++.|++ +++|||+|-||.+|+..++|.|+.|.+|+++ ..|++++..
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii 224 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEII 224 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhc
Confidence 9999999999999998888887764 5889999999999999999999999999997 589988764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=287.56 Aligned_cols=197 Identities=28% Similarity=0.375 Sum_probs=166.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------eEEeecc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------RFARYHQ 471 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~~~~~~q 471 (629)
+++.+++++.+|+.....+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++++. .-|.++|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3678999999996544348999999999999999999999999999999999999999999998752 3467778
Q ss_pred chhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 472 HLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+.. +.+-+++.+++.. +.++....+.+.+.|..+||.+.. ++.+.+|||||||||.|||||+.+|++|+|||
T Consensus 82 ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 82 NEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred cCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 753 3334566666543 334445567788999999998765 56789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe--CCEEEE
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE--NGKVTK 597 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~--~G~i~~ 597 (629)
|+.+||.-+++.+.++|-+. +..+++||||++++.-+++|+++|. .|+|+.
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 99999999999988887654 6789999999999999999999998 568864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=330.96 Aligned_cols=202 Identities=32% Similarity=0.449 Sum_probs=172.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
.++++|+++.|++++ ++++|+||++++|+.++|||+||||||||+++|+|+++|+.|+|.+++. ..+.
T Consensus 320 ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 466779999998665 4899999999999999999999999999999999999999999999873 3578
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc-----cCcC----cCChhHHHHHHHHHHHccC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV-----CPIR----QLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~----~LSgGqkqrv~lAral~~~ 538 (629)
+++|++. -+.-|..+++....+. .+++++.+++++.|+.+.... ..++ .|||||+|||+|||||+++
T Consensus 399 ~v~Q~p~---lf~gTireNi~l~~~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 399 WVSQNPY---LFAGTIRENILLARPD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eeCCCCc---cccccHHHHhhccCCc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 8888863 2456788888765554 567788889988887644332 2233 4999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++++||||||+|||.++.+.+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++. .|.+++..+
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L~~ 543 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEELSE 543 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHHhh
Confidence 9999999999999999999999999887 5799999999999966 89999999999975 788877643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=300.27 Aligned_cols=186 Identities=25% Similarity=0.338 Sum_probs=154.2
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++|++++|+.....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999643234899999999999999999999999999999999999999999998863 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|++|+.. +. ..++.+++... .. ...+.+.+.++ + ..++.+|||||+|||+|||||+.+|++|||||
T Consensus 85 ~~v~q~~~--~~-~~tv~~~l~~~-~~-~~~~~~~~~l~---~-----~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 85 TIIPQDPT--LF-SGTIRSNLDPF-DE-YSDEEIYGALR---V-----SEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred EEEecCCc--cc-CccHHHHhccc-CC-CCHHHHHHHhh---c-----cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 88888753 22 34777776421 11 12233444443 2 24568999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 547 PTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||++||+.++..+.+.|.++ +.|+|++|||.+++.. ||++++|++|++..
T Consensus 152 P~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 152 ATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 99999999999999999876 4689999999999976 99999999999964
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=310.08 Aligned_cols=208 Identities=24% Similarity=0.370 Sum_probs=147.2
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
|+++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|++.+.+.. +.......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~--~~~~~~~~----- 73 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD--LALADPAW----- 73 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCee--hHhcCHHH-----
Confidence 468999999963 579999999999999999999999999999999999999999998875432 11000000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHH-----HHHHHHHHhC--CCCchhhhcccCCCChHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE-----ARAANILHGL--GFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~L~~l--gl~~~~~~~~~~~LSGGqr 238 (629)
.+..+..+.+... ..+. +..++...... ........ ..+.++++.+ ++. ...++++.+||||||
T Consensus 74 ----~~~~i~~~~q~~~-~~~~-tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~ 144 (237)
T cd03252 74 ----LRRQVGVVLQENV-LFNR-SIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQR 144 (237)
T ss_pred ----HhhcEEEEcCCch-hccc-hHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHH
Confidence 0000000000000 0011 11111111100 00010100 1223445555 554 345778999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|++|+++..+.
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~ 219 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGS 219 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999998765 579999999999996 699999999999987653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=299.89 Aligned_cols=216 Identities=24% Similarity=0.352 Sum_probs=165.6
Q ss_pred ceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 85 ~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
...|+++|+++.|+++++|+|+|++|++||.++|+|||||||||||++|+|.+.|.+|.+.+.+.... ..+.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G--~~~~------ 100 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG--KGET------ 100 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeecc--CCcc------
Confidence 34699999999999999999999999999999999999999999999999999999998887653211 0000
Q ss_pred hhchHHHHHHHHHHHHHhc-cCChhHHHH-HHH-HHhhhhc---cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVA-CEDDESQEQ-LMD-IYDRLDD---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
....|..++.+...+.. +.......+ +.. .+..+.. -..+....++..+|+.+|+. ++.+++..+||-|||
T Consensus 101 --~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~ 177 (257)
T COG1119 101 --IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQ 177 (257)
T ss_pred --hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHH
Confidence 01223333332222211 111111111 111 1111111 11234567889999999997 589999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||.|||||+.+|.+|||||||+|||..+++.+.+.|.++ +.++|+|||..+++..+.++++.+.+|++++.+
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 9999999999999999999999999999999999988776 357999999999999999999999999998653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=342.23 Aligned_cols=198 Identities=24% Similarity=0.308 Sum_probs=166.2
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEEee
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFARY 469 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~~~ 469 (629)
++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4689999963 34899999999999999999999999999999999999999999998763 247888
Q ss_pred ccchhcccCCCCCHHHHHhhcC--------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF--------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|... +....++.+++.... ......+.+.++++.+|+... .++++.+|||||||||+|||||+.+|++
T Consensus 79 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 79 HQELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID-PRAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred ecccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCC-ccCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 88753 344568877764321 111123467889999999754 3567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhC
Confidence 9999999999999999999998775 5689999999999999999999999999974 5665554
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=311.18 Aligned_cols=216 Identities=19% Similarity=0.261 Sum_probs=158.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-----PVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-----p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.. |++|++.+++.. +.......
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--i~~~~~~~- 79 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD--IYDPAVDV- 79 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE--cccccccH-
Confidence 4899999999998889999999999999999999999999999999999864 367888775432 21100000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc---hhhhcccCCCChHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK---EMQQKKTKDFSGGWR 238 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqr 238 (629)
...+..+....++...+ +.+..+++...............+.++.++++.+|+.. ...++++.+|||||+
T Consensus 80 ------~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 ------VELRKKVGMVFQKPNPF-PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred ------HHHhhheEEEecCCccC-cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 00000111111111111 11222222111111111112234567888999998842 345788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||++|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|++.+.+.
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999998765 5799999999999999999999999999987643
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=311.10 Aligned_cols=204 Identities=21% Similarity=0.231 Sum_probs=165.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
.++|+++|++++|+. . .+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 14 ~~~l~~~~l~~~~~~-~-~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-Y-QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 467999999999963 3 489999999999999999999999999999999999985 7999988642
Q ss_pred -------eeEEeeccchhcccCCCCCHHHHHhhcC-----CC-hhhHHHHHHHHHHcCCCC---cccccCcCcCChhHHH
Q psy10512 464 -------LRFARYHQHLHELLDLDISPLDYMLQSF-----PE-VKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKC 527 (629)
Q Consensus 464 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkq 527 (629)
..++|++|... +.. .++.+++.... .. ....+.+..+++.+++.. .....++.+|||||+|
T Consensus 92 ~~~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 168 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPN--PFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ 168 (265)
T ss_pred cCHHHHhccEEEEccCCc--CCc-chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence 23678887643 222 36776654221 11 112355677888888742 1234567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999999876 3589999999999999999999999999975 5776655
Q ss_pred H
Q psy10512 606 K 606 (629)
Q Consensus 606 ~ 606 (629)
.
T Consensus 248 ~ 248 (265)
T PRK14252 248 F 248 (265)
T ss_pred H
Confidence 3
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=309.66 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=168.8
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCc--------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSH-------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-------- 463 (629)
++.+.+++++++|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 467899999999953 3489999999999999999999999999999999999987 7999988763
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhcC--C--ChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQSF--P--EVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 531 (629)
..++|++|... + +..++.+++.... . .....+.+.++++.+++... ....++.+|||||+||++|
T Consensus 84 ~~~~~~~i~~v~q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 84 PVVVRRYIGMVFQQPN--P-FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hHhhhhceEEEecCCc--c-ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 13678887753 2 2467777764321 0 11224567889999998532 2235678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEe--------CCEEEEecCC
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICE--------NGKVTKWEGN 601 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~--------~G~i~~~~g~ 601 (629)
||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||+|++|+ +|+++. .|+
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~ 239 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGP 239 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCC
Confidence 99999999999999999999999999999999876 3589999999999999999999996 899975 677
Q ss_pred HHHHHH
Q psy10512 602 ILDYKE 607 (629)
Q Consensus 602 ~~~~~~ 607 (629)
.+++.+
T Consensus 240 ~~~~~~ 245 (261)
T PRK14263 240 TAQIFQ 245 (261)
T ss_pred HHHHHh
Confidence 776643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 629 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-38 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-17 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-35 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-17 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-35 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-17 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-13 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-13 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 9e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-06 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-05 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 7e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-08 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-08 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-08 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-08 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-07 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 5e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 8e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 9e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 629 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-146 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-46 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-41 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-45 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-35 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-20 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-29 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 9e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-16 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-15 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-13 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-20 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-18 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-15 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-15 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-13 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-07 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-11 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-06 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 6e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-09 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-09 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-09 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-09 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-06 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 9e-09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 9e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-07 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 4e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 8e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-146
Identities = 146/633 (23%), Positives = 225/633 (35%), Gaps = 133/633 (21%)
Query: 52 ISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELN 111
+ ++A E + + D+ FS+ + LL T L L
Sbjct: 400 LHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLK 459
Query: 112 CGRRYGLLGLNGSGKSTLLAVLGNREV---PVPDHIDIFHLTREMPA--SDKSALTCVME 166
RRYG+ G NG GKSTL+ + N +V P + ++ ++ SD S L V E
Sbjct: 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE 519
Query: 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
+ + L GFT EM
Sbjct: 520 SGVGT-------------------------------------KEAIKDKLIEFGFTDEMI 542
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIIS 286
SGGW+M++ALARA+ +LLLDEPTNHLD WL L T + IS
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITIS 602
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYI 346
H FL+ VC II+ + KL+ Y GN+ F K K Y + K
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC-----PAAKAYEELSNTDLEFK--- 654
Query: 347 ARFGHGSAKLARQAQSKEKTLAKMVNQ-----GLTDKVTTDKTVTFTFPS---------- 391
++K+K + K+ N G + TD + S
Sbjct: 655 ----FPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGA 710
Query: 392 ---------CGKIPPP---VIMVQNVSFRY-----------------SDDGPWIYRNLEF 422
G++ P V +N Y S+ W ++ E
Sbjct: 711 GKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 770
Query: 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-------------------------- 456
+D + N A + I G G
Sbjct: 771 RETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMK 830
Query: 457 -------MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
M N+ + + +++ F + R+E+ + GL
Sbjct: 831 SERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT-RKEIEEHCSMLGL 889
Query: 510 TG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG 568
IR LS GQK ++V A WQ PHL++LDEPTN+LD +++ AL+ A+ +FEG
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
Query: 569 GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
G+++++H + EE+W ++G++T N
Sbjct: 950 GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHN 982
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 5e-46
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 6/197 (3%)
Query: 119 LGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178
+ + + R+ + L E +M VD + +L
Sbjct: 792 IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELV 851
Query: 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE-MQQKKTKDFSGGW 237
E + ++ LG E + + + SGG
Sbjct: 852 E-----SHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906
Query: 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCT 297
++++ LA + +PHL++LDEPTN+LD D+ L + LK ++ ++II+HS +F +
Sbjct: 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTE 966
Query: 298 NIIHLDKRKLKYYGGNY 314
+ + ++ G N+
Sbjct: 967 EVWAVKDGRMTPSGHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 159 bits (402), Expect = 5e-41
Identities = 73/410 (17%), Positives = 129/410 (31%), Gaps = 17/410 (4%)
Query: 215 ILH-GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL-LLLDEPTNHLDLDACVWLE 272
+L GL + ++K+ M + + P L LL ++ A
Sbjct: 255 LLSRGLNERETGIKRKSAVIIDN--MCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAR 312
Query: 273 EELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
E + L + + + + + H E + + +Y
Sbjct: 313 EVTLRALKTLRRVGNVGE--DDAIPELSHAGDVS-TTLQVVNELLKDETVAPRFKIVVEY 369
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392
I + K L + P+
Sbjct: 370 ---IAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNF 426
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
+ N F + + + + R + GPNG GKSTL+ I
Sbjct: 427 DDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R + + D S LD++ +S +E ++ + +G T
Sbjct: 487 DGFPT---QEECRTVYVEHDI-DGTHSDTSVLDFVFESGVG--TKEAIKDKLIEFGFTDE 540
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVL 572
PI LS G K ++ A + +LLLDEPTNHLD + L + +N +
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIT 600
Query: 573 VSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNKSAA 622
+SHD ++ V E I E K+ K++GN ++ + + S
Sbjct: 601 ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK-CPAAKAYEELSNT 649
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-45
Identities = 92/522 (17%), Positives = 197/522 (37%), Gaps = 90/522 (17%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GK+T + +L + +P D+ ++ R ++ ++ E
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-------LQNYFE 169
Query: 171 RVRLEKLA----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
R++ ++ Q V + ++ ++ ++D++ + + + L
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD------ 223
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV---WLEEELKTYKRILV 283
++ SGG R+A+A AL K H DEP+++LD+ + + L + ++
Sbjct: 224 -RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMK 343
++ H L+ + ++IH+ + G Y F K + +
Sbjct: 283 VVEHDLAVLDYLS-DVIHV----VYGEPGVYGIFSKPK-------------------GTR 318
Query: 344 NYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQ 403
N I F G K + + + L+++V ++ +P K ++
Sbjct: 319 NGINEFLQGYLK-DENVRFRPYEIRFTK---LSERVDVERETLVEYPRLVKDYGSFK-LE 373
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
I + + +VGPNG GK+T + ++ G P+ G V +
Sbjct: 374 VEPGE-------IRKG--------EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
Query: 464 LRFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPI 518
+ + Q+ + + + ++ +++ G+ +
Sbjct: 419 VAYKP--QY------IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNV 469
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVS 574
LS G+ RV A + + LLDEP+ +LD+E A++ AI E ++V
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 575 HDFRLINQVAEEIW-----ICENGKVTKWEGNILDYKETLRA 611
HD +I+ V++ + +G+ G L +
Sbjct: 530 HDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 571
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 25/215 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P + ++ RY + +YR + + +VGPNG GK+T + ++ G L P++
Sbjct: 90 PEQLDEDCVHRYGVNAFVLYRL--PIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147
Query: 458 VRKNSHLRFARYHQ-----HLHELLDLDISPL--DYMLQSFPEVKD---------REEMR 501
+ + + L + +I P+ + P+ +E+
Sbjct: 148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG 207
Query: 502 KIIGRYGLTGRQQVC--PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
K + V + QLS G+ RV A + H DEP+++LD+ +
Sbjct: 208 KFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
Query: 560 ADAINDF--EGG-LVLVSHDFRLINQVAEEIWICE 591
A I EG +++V HD +++ +++ I
Sbjct: 268 ARVIRRLANEGKAVLVVEHDLAVLDYLSD--VIHV 300
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 35/220 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V+ + G L+ E+ G G++G NG GK+T + +L E P ++
Sbjct: 358 VEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 415
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ V + Q + E + + +L +
Sbjct: 416 ---------------------DLTVAYKP---QYIKAEYEGTVYEL--LSKIDSS--KLN 447
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD- 266
+ +L LG ++ + +D SGG R+A+A L + LLDEP+ +LD++
Sbjct: 448 SNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506
Query: 267 ---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+ ++ ++ +++ H ++ V +I +
Sbjct: 507 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 5e-35
Identities = 79/504 (15%), Positives = 184/504 (36%), Gaps = 85/504 (16%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP----VPDHIDIFHLTREMPASDKSA-LTCVMEV 167
G+LG NG GK+T+L +L +P + + + + +
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84
Query: 168 DEERVR----LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
+ + V +E ++ L ++ I ++D + + L
Sbjct: 85 ELKIVHKIQYVEYASKFLKGTVNE--------ILTKID------ERGKKDEVKELLN-MT 129
Query: 224 EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--I 281
+ K SGG R+ +A +L + + + D+P+++LD+ + + + ++ +
Sbjct: 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 282 LVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAH 341
++++ H L+ + ++IH+ + YG +++ + +
Sbjct: 190 VIVVDHDLIVLDYLT-DLIHIIYGESSVYGRVSKSY------AARVGINNF--------- 233
Query: 342 MKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGK-IPPPVI 400
+K Y+ + + M+ + ++ D + K + +
Sbjct: 234 LKGYLPAENMKI---------RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQL 284
Query: 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
+V N + + + ++GPNG GK+T ++ G++T G V
Sbjct: 285 VVDNGEAKEGE-----------------IIGILGPNGIGKTTFARILVGEITADEGSVTP 327
Query: 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR-----EEMRKIIGRYGLTGRQQV 515
+ Q + + D + Y+ + + EE+ K + + L
Sbjct: 328 E-KQILSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN-- 382
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL- 572
+ LS G+ ++ A + L +LD+P+++LD+E +A AI E V
Sbjct: 383 --VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 573 -VSHDFRLINQVAEEIWICENGKV 595
+ HD + + +A+ I + +
Sbjct: 441 IIDHDLSIHDYIADRIIVFKGEPE 464
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-20
Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 56/230 (24%)
Query: 404 NVSFRYSDDGPWIYRNLEF-GIDLDT-----RLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
V RY +G F L T L ++G NG GK+T+L ++ G++ P+ G
Sbjct: 4 EVIHRYKVNG--------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55
Query: 457 ---MVRKNSHLRFAR-----------------------YHQHLHELLDL---DISPLDYM 487
V K+ L+ R Y ++ + L +I
Sbjct: 56 PNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE 115
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
EVK+ M + + LS G R++ A + + + D+P
Sbjct: 116 RGKKDEVKELLNMTNLWNKD----------ANILSGGGLQRLLVAASLLREADVYIFDQP 165
Query: 548 TNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+++LD+ +A AI + +++V HD +++ + + I I
Sbjct: 166 SSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS 215
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 8e-19
Identities = 46/275 (16%), Positives = 87/275 (31%), Gaps = 46/275 (16%)
Query: 65 DAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGS 124
++ + + +K +L+ D E G G+LG NG
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDN-GEAKEGEIIGILGPNGI 305
Query: 125 GKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184
GK+T +L + + S K Q +
Sbjct: 306 GKTTFARILVGEITADEGSVTP----EKQILSYKP--------------------QRI-- 339
Query: 185 EDDESQEQLMDIYDRLDDISAD---TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241
+ L++ S D T+ + L + + D SGG ++
Sbjct: 340 ----FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKL 394
Query: 242 ALARALYVKPHLLLLDEPTNHLDLD--ACVW--LEEELKTYKRILVIISHSQDFLNGVCT 297
+A L + L +LD+P+++LD++ V ++ + K + II H + +
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454
Query: 298 NIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
II G +A T L+ M ++
Sbjct: 455 RIIVFK-------GEPEKAGLATSPVTLKTGMNEF 482
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 41/255 (16%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+I + + G I + + + I + L G NGAGK+TLLN++ +
Sbjct: 18 SHMLIQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 456 GMV--------RKNSHLRFARYH-----QHLHELLDLDISPLDYMLQSF---------PE 493
G V + R H L E +D ++ +
Sbjct: 76 GTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
+ R E +++ G++ + Q I LS G+K RV+ A L P +L+LDEP LD
Sbjct: 136 DEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARALM-GQPQVLILDEPAAGLD 193
Query: 553 METIDALADAINDF-----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
++L ++ ++ V+H I +I + ++G+ ++
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS---------IQQ 244
Query: 608 TLRAKVLKEKNKSAA 622
+L +N S
Sbjct: 245 GAVEDILTSENMSRF 259
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 9e-22
Identities = 47/250 (18%), Positives = 92/250 (36%), Gaps = 28/250 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ G +L+ ++ G ++ L GLNG+GK+TLL +L E +++F
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 148 HLTREMPASDKSAL-TCVMEVD---EERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-- 201
+ + V E+ + + +V + + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV----------ISGAFKSIGVY 131
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDF---SGGWRMRIALARALYVKPHLLLLDE 258
D A +L +G M K + S G + R+ +ARAL +P +L+LDE
Sbjct: 132 QDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 259 PTNHLDLDACVWLEEELKTYKR-----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
P LD A L L + ++ ++H + + + I+ L + G
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 314 YEAFCKTRLE 323
+ +
Sbjct: 248 EDILTSENMS 257
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 87/504 (17%), Positives = 187/504 (37%), Gaps = 91/504 (18%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GKST + +L + +P D+ + R ++ ++ E
Sbjct: 47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE-------LQNYFE 99
Query: 171 RVRLEKLA----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
+++ ++ Q V + +++++ + D+ +A + + L
Sbjct: 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE------ 153
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRILV 283
++ + SGG R+A+A AL DEP+++LD+ L + ++
Sbjct: 154 -REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYG--GNYEAFCKTRLELLENQMKQYNWEQDQIAH 341
++ H L+ + I + YG G Y F ++ + N + ++
Sbjct: 213 VVEHDLAVLDYLSDIIHVV-------YGEPGVYGIF--SQPKGTRNGINEF--------- 254
Query: 342 MKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIM 401
++ Y+ + ++V ++ T+P K
Sbjct: 255 LRGYLKDENVRFRPYEIKFTKTG------------ERVEIERETLVTYPRLVKDYGSFR- 301
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++ I + + +VGPNG GK+T + ++ G P+ G + +
Sbjct: 302 LEVEPGE-------IKKG--------EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD 346
Query: 462 SHLRFAR------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
+ + Y ++ELL + ++ +++ G+
Sbjct: 347 LTVAYKPQYIKADYEGTVYELLSKIDA---------SKLNSNFYKTELLKPLGIIDLYDR 397
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL- 572
+LS G+ RV A + + LLDEP+ +LD+E A++ AI +
Sbjct: 398 EV-NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 573 -VSHDFRLINQVAEEIWICENGKV 595
V HD +I+ V++ + + E
Sbjct: 457 VVEHDVLMIDYVSDRLMVFEGEPG 480
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 8e-17
Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 61/226 (26%)
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP---------- 453
+ RY + +YR + + +VGPNG GKST + ++ G L P
Sbjct: 26 DCVHRYGVNAFVLYRL--PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 454 ---------------------SVGMVRK------NSHLRFARYHQHLHELLDLDISPLDY 486
+ V K + + L
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL---------KKAD 134
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
EV E+ ++ R I+ LS G+ RV A + DE
Sbjct: 135 ETGKLEEVVKALELENVLERE----------IQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 547 PTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWI 589
P+++LD+ A AI EG +++V HD +++ +++ I +
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHV 230
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 45/272 (16%), Positives = 89/272 (32%), Gaps = 65/272 (23%)
Query: 44 GVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELL 103
+K E P E K ++ E L S +++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEI-------- 309
Query: 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163
G G++G NG GK+T + L
Sbjct: 310 -------KKGEVIGIVGPNGIGKTTFV----------------------------KMLAG 334
Query: 164 VMEVDEERVRLEKLAEQLVACEDDESQEQL------MDIYDRLDDISAD--TAEARAANI 215
V E E ++ + + + Q +Y+ L I A + +
Sbjct: 335 VEEPTEGKIEWD---LTVA------YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL 385
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD----ACVWL 271
L LG ++ ++ + SGG R+A+A L + LLDEP+ +LD++ +
Sbjct: 386 LKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
++ ++ +++ H ++ V ++ +
Sbjct: 445 RHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 80/508 (15%), Positives = 165/508 (32%), Gaps = 93/508 (18%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
GL+G NG GKST L +L + P+ + P + + E + K
Sbjct: 107 GLVGTNGIGKSTALKIL-AGKQK-PNLGRF-----DDPPEWQEIIK-YFRGSELQNYFTK 158
Query: 177 LAEQLVAC---------EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ E + + + + + L + + + + L + + +
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQ-LENVLK 216
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVI 284
+ + SGG R A+ + + + + DEP+++LD+ + + L + ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKN 344
+ H L+ + + + Y A + + +
Sbjct: 277 VEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFL----------------DG 320
Query: 345 YIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQN 404
+I A Q + + T D + F++PS K + +
Sbjct: 321 HIPAENLRFRTEALQFRIADAT---------EDLQNDSASRAFSYPSLKKTQGDFV-LNV 370
Query: 405 VSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP---------SV 455
+ E L ++G NG GK+TL+ L+ G L P +V
Sbjct: 371 EEGE-------FSDS-EI-------LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNV 415
Query: 456 GMVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG-RQ 513
M + +F Q + + + + + ++ +
Sbjct: 416 SMKPQKIAPKFPGTVRQLFFKKIR-------------GQFLNPQFQTDVVKPLRIDDIID 462
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGL- 570
Q ++ LS G+ RV + L+DEP+ +LD E + I F
Sbjct: 463 Q--EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 571 -VLVSHDFRLINQVAEEIWICENGKVTK 597
+V HDF + +A+++ + E
Sbjct: 521 AFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 60/241 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNL-----EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
P + +V+ RYS + ++R + L LVG NG GKST L ++ G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQV-------LGLVGTNGIGKSTALKILAGKQK 128
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDISPL---------DYMLQSFPEV--------- 494
P++G + + EL + L + + P
Sbjct: 129 PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG 188
Query: 495 ----KDREEMRK-------------IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
E+ + ++ R I +LS G+ R Q
Sbjct: 189 ELLKLRMEKSPEDVKRYIKILQLENVLKRD----------IEKLSGGELQRFAIGMSCVQ 238
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGG-LVLVSHDFRLINQVAEEIWICENGK 594
+ + DEP+++LD++ A I ++ V HD +++ +++ + I
Sbjct: 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298
Query: 595 V 595
Sbjct: 299 S 299
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 45/274 (16%)
Query: 50 EEISPEEALCRKLEAD-AKLNAEARACTGSLAVHPKSRDVKIANFSITF--------HGC 100
S E + L+ N R + + D++ + S F G
Sbjct: 306 LPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD 365
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH-IDIFHLTREMPASDKS 159
+L E + ++G NG+GK+TL+ +L + PD DI L M
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL-AGALK-PDEGQDIPKLNVSMKPQK-- 421
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
+ VR QL + I + + +++ L
Sbjct: 422 -IAPKFP---GTVR------QLFFKK----------IRGQFLN------PQFQTDVVKPL 455
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY- 278
++ ++ + SGG R+A+ AL + + L+DEP+ +LD + + + ++ +
Sbjct: 456 RID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 279 ---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
K+ I+ H + +I + K
Sbjct: 515 LHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 7e-24
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 46/213 (21%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ V+N+ F Y ++++ L F ++ LA++G NG GKSTLL+L+ G P G
Sbjct: 3 KALSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 458 VRKNSHLRFARY----HQHLHELLDLDISPLDYMLQ---------SFPEVKDREEMRKII 504
+ + Q S LD +L + P+ D + + +
Sbjct: 62 I------EVYQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL 113
Query: 505 GRYGLT---GRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD-------M 553
LT R LS GQ+ ++ A +A L+LLDEPT+ LD +
Sbjct: 114 DYLNLTHLAKR----EFTSLSGGQRQLILIARAIA-SECKLILLDEPTSALDLANQDIVL 168
Query: 554 ETIDALADAINDFEG-GLVLVSHDFRLINQVAE 585
+ LA + + +V +H NQV
Sbjct: 169 SLLIDLAQS----QNMTVVFTTHQ---PNQVVA 194
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 55/195 (28%)
Query: 88 VKIANFSITFHGCE-LLQDTMLELNCGRRYGLLGLNGSGKS----TLLAVL----GNREV 138
+ + N + L Q +LN G +LG NG GKS LL + G EV
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 139 P-----VP-DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
VP F + V+++ V
Sbjct: 65 YQSIGFVPQFFSSPFAYS-------------VLDI--------------V---------- 87
Query: 193 LMDIYDRLDDISADTAE--ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
LM ++ + + A L L + +++ SGG R I +ARA+ +
Sbjct: 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIARAIASE 146
Query: 251 PHLLLLDEPTNHLDL 265
L+LLDEPT+ LDL
Sbjct: 147 CKLILLDEPTSALDL 161
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 5e-21
Identities = 57/202 (28%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARY-- 469
+ + R L LVGPNGAGKSTLL + G +T G ++ S + A +
Sbjct: 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRA 76
Query: 470 --HQHLHELLDLDISPLDY-MLQSFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSD 523
Q Y L + E + + G L GR QLS
Sbjct: 77 YLSQQQT--PPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGR----STNQLSG 129
Query: 524 GQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLV 573
G+ RV A A A LLLLDEP N LD+ +D + A++ +V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 574 SHDFRLINQVAEEIWICENGKV 595
SHD + A W+ + GK+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKM 211
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 8e-13
Identities = 35/178 (19%), Positives = 52/178 (29%), Gaps = 38/178 (21%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASDKS 159
L E+ G L+G NG+GKSTLLA + I A+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 160 ALTCVMEVDEERVRLEKLAEQLVAC-----EDDESQEQLMDIYDRLDDISADTAEARAAN 214
+ ++ + E + L + +
Sbjct: 73 LHRAYLS-QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---ALA------LDDKLGR 122
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL-------YVKPHLLLLDEPTNHLDL 265
+ L SGG R+ LA + LLLLDEP N LD+
Sbjct: 123 STNQL--------------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 37/243 (15%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+ +++ YSD + + + I A++G NG GKSTL G L PS G
Sbjct: 6 YILKVEELNYNYSDGTHAL-KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 458 VR--------KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPEVKDR 497
+ + R +Q + D+S ++ L E++ R
Sbjct: 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDEIRKR 123
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMET 555
+ K G L + P LS GQK RV A L + P +L+LDEPT LD
Sbjct: 124 VDNALKRTGIEHLKDK----PTHCLSFGQKKRVAIAGVLVME-PKVLILDEPTAGLDPMG 178
Query: 556 IDALADAINDF--EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG---NILDYKET 608
+ + + + E G+ ++ +HD ++ + +++ + G+V +G + KE
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVFAEKEV 237
Query: 609 LRA 611
+R
Sbjct: 238 IRK 240
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ D R N L G ++ K T S G + R+A+A L ++P +L+LDEPT
Sbjct: 115 LPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 263 LDLDACVWLEEELKTYKRI----LVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318
LD + + L ++ ++I +H D + C N+ + + ++ G E F
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF- 232
Query: 319 KTRLELLEN 327
E++
Sbjct: 233 -AEKEVIRK 240
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 40/225 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLLNLIYGDLTPSV 455
I V NVS + P + LE + L L + G G+GKSTLL ++ G + P+
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALE-NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 456 GMVR---KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPEVKDREEM 500
G V + R Q E + +++ ++ +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP--------DRDP 113
Query: 501 RKIIGRY----GLTGRQ--QVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDM 553
++ + GL P LS G+K RV A + + P +L+LDEP LD
Sbjct: 114 VPLVKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRVAIASVIVHE-PDILILDEPLVGLDR 171
Query: 554 ETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKV 595
E L + + G +L+SHD + + + + E GK
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 208 AEARAANILHGLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-- 264
+ +G + + + SGG + R+A+A + +P +L+LDEP LD
Sbjct: 113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 265 -----LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
L + KT +++ISH + + ++ L+K K + G E K
Sbjct: 173 GKTDLLRIVEKWKTLGKT----VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 320 TRLELLENQM 329
++M
Sbjct: 229 YDPRFFTSKM 238
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 6e-18
Identities = 101/665 (15%), Positives = 194/665 (29%), Gaps = 200/665 (30%)
Query: 35 DVKP-EQITNGV--KQEPEEI----SPEEA-------LCRK------------LEAD--- 65
D K + + + K+E + I L K L +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 66 --AKLNAEARACTGSLAVHPKSRDV------KIANFSITFHGCEL-LQDTMLELNCGRRY 116
+ + E R + ++ + RD A ++++ L L+ +LEL +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 117 GLLGLNGSGKSTL-LAVLGNREVPVPDHID--IFHLTREMPASDKSALTCVMEVDEERVR 173
+ G+ GSGK+ + L V V +D IF L
Sbjct: 154 LIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLN----------------------- 188
Query: 174 LEKLAEQLVACEDDESQ-EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
L C E+ E L + ++D ++ ++NI + +
Sbjct: 189 -------LKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQA-------- 232
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK---RILVIISHSQ 289
+R L Y LL+L V + + +IL+ Q
Sbjct: 233 -----ELRRLLKSKPYENC-LLVLLN----------VQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 290 --DFLNGVCTNIIHLDKRKLKYYGGNYEAFC----KTRLELLENQMKQYN-------WE- 335
DFL+ T I LD + ++ R + L ++ N E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 336 -QDQIAHMKNYIARFGHGSAKLARQAQSK--EKTLAKMVNQGLTDKVTTDKTVTFT-FPS 391
+D +A N+ + + +N L + FP
Sbjct: 337 IRDGLATWDNW------------KHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPP 383
Query: 392 CGKIPPPVIMVQNVSFRYSDDGPW---IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
IP ++ + W I ++ ++ + +LV + + IY
Sbjct: 384 SAHIPTILLSLI-----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 449 GDLTPSVGMVRKNSHLRF-ARYHQHL-HELLDLDISPLD--------YMLQSFPEVKDRE 498
+L + H Y+ + DL LD + L++ +
Sbjct: 433 LELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDG---QKCRVVFAYLAWQAPHLLL-----LDEPTNH 550
R + + L QK R AW A +L L +
Sbjct: 492 LFRMV---F-------------LDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYKPY 533
Query: 551 L--DMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606
+ + + L +AI DF + L+ + + ++A + E+ + ++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA---LMAEDEAI---------FE 581
Query: 607 ETLRA 611
E +
Sbjct: 582 EAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 51/347 (14%), Positives = 98/347 (28%), Gaps = 120/347 (34%)
Query: 29 TT---SATNDVKPEQITN-GVKQEPEEISPEEA--LCRK-LEADA-KLNAEARACTGSLA 80
TT T+ + T+ + ++P+E L K L+ L E T
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTT--- 325
Query: 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTL----------- 129
+P +++ + E ++D + + + L +S+L
Sbjct: 326 -NP----RRLSIIA------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 130 ---LAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ-LVACE 185
L+V P I P S + + + V + KL + LV +
Sbjct: 375 FDRLSVF-------PPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 186 DDESQEQLMDIYDRLDDISADTAEARAANILHG--LGFTKEMQQKKTKDFS-----GGWR 238
ES + IY L E A LH + + + D +
Sbjct: 421 PKESTISIPSIYLEL----KVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 239 MRIALARALYVKPHLLLLDE-------PTNHLDLDACVWLE------------------- 272
I + HL ++ LD +LE
Sbjct: 475 SHIG-----H---HLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNT 523
Query: 273 -EELKTYKRILV----------------IISHSQDFLNGVCTNIIHL 302
++LK YK + + ++ + T+++ +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 4e-17
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR---LALVGPNGAGKSTLLNLIYGDLTPSV 455
+I ++NV + +LE I+L+ + ++GPNG+GK+TLL I G L P
Sbjct: 1 MIQLKNVGITL-SGKGYERFSLE-NINLEVNGEKVIILGPNGSGKTTLLRAISG-LLPYS 57
Query: 456 GMVRKN----SHLR-FARY------HQHLHELLDLDISPLDYMLQSFPEVK--DREEMRK 502
G + N +R + RY + ++ + + E+K DR+ +
Sbjct: 58 GNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY-------LYEELKGLDRDLFLE 110
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALAD 561
++ L + +LS GQ V + LA Q P ++ LDEP ++D ++
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ-PEIVGLDEPFENVDAARRHVISR 169
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
I ++ +LV+H+ ++N E G
Sbjct: 170 YIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNR 203
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 48/218 (22%)
Query: 88 VKIANFSITFHGCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+++ N IT G L++ LE+N G + +LG NGSGK+TLL + + +P +
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 144 I-----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD 198
I ++ + +R + + + D
Sbjct: 60 IFINGMEVRKIRNY-------------------IRYSTNLPEAYEIG--------VTVND 92
Query: 199 ------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
L + +L L +E+ ++K S G + + + AL +P
Sbjct: 93 IVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE 148
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQD 290
++ LDEP ++D + +K Y + ++++H D
Sbjct: 149 IVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELD 186
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 40/228 (17%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ ++++S Y + + I+ + GPNG GK+TLL I L P G
Sbjct: 9 SKLEIRDLSVGY---DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 458 VRKNSH-LRFARYH-----QHLHELLDLDISPLDYM-----LQSFPEVKDREEMRKIIGR 506
+ N + + + + + IS DY+ L K+ + +
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNE--IMDALES 121
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADA 562
+ ++ + +LS G RV A + +LD+P +D ++ + +
Sbjct: 122 VEVLDLKK--KLGELSQGTIRRVQLA----STLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 563 INDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
I + +G +++ S + + +D K+
Sbjct: 176 ILEILKEKGIVIISSRE---ELSYCDVNENLHKYST------KIDKKD 214
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
+ + G G NG GK+TL + ++ + + + +
Sbjct: 30 MTIEKGNVVNFHGPNGIGKTTL--------------LKT--ISTYLKPLKGEIIYNGVPI 73
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ + ++ L E+ + S E + L + + + + L + +
Sbjct: 74 TKVKGKIFFLPEE-IIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD--LK 128
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC--VW--LEEELKTYKRILV 283
KK + S G R+ LA L V + +LD+P +D D+ V + E LK +++
Sbjct: 129 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 284 IISHSQDFLNGVCTNIIHLDKRKL 307
C +L K
Sbjct: 189 SSREELS----YCDVNENLHKYST 208
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 6e-15
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 23/194 (11%)
Query: 77 GSLAVHPKSRD---VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
GS +H V + + E+L+ E+ G +GL+G NG+GK+T
Sbjct: 2 GSDKIHHHHHHMGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTT---- 57
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL---AEQLVACEDDESQ 190
+ I ++ + S V EE + KL + +
Sbjct: 58 ----------LRI--ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
+ + S+ E G E + + +S G ++ +ARAL V
Sbjct: 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVN 164
Query: 251 PHLLLLDEPTNHLD 264
P L +LDEPT+ LD
Sbjct: 165 PRLAILDEPTSGLD 178
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 40/245 (16%)
Query: 398 PVIMVQNVSFRYSD----DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
++V+++ R G + F I+ L+GPNGAGK+T L +I + P
Sbjct: 14 GAVVVKDLRKRIGKKEILKG------ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 67
Query: 454 SVGMVRKN-----SHLRFARYH-----QHLHELLDLDISPLDYM-----LQSFPEVKDRE 498
S G+V R + ++ ++Y+ + + E
Sbjct: 68 SSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEE 125
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDME 554
+ + GL + + + S G +++ A +A P L +LDEPT+ LD+
Sbjct: 126 MVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA----RALMVNPRLAILDEPTSGLDVL 180
Query: 555 TIDALADAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRA 611
+ + EG +LVS H+ + + + I + NG + + G + + KE +A
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKERYKA 239
Query: 612 KVLKE 616
+ ++E
Sbjct: 240 QNIEE 244
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 38/211 (18%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRF---- 466
+ ++ ++GPNG+GKSTL+N+I G L G V K +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 467 ARYHQHLHELLDLDISPLDYML------------QSFP------EVKDREEMRKIIGRYG 508
R Q L ++ + L+ +L F E + E+ KI+
Sbjct: 85 VRTFQTPQPLKEM--TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPT---NHLDMETIDALADAIN 564
L+ +LS GQ V L P ++++DEP I +
Sbjct: 143 LSHLYDR-KAGELSGGQMKLVEIGRALMTN-PKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+++ H ++ + +++ NG++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT---NHLD 264
+A IL L + +K + SGG + + RAL P ++++DEP
Sbjct: 130 MVEKAFKILEFLKLSHLYDRK-AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 265 LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
ELK +II H D + ++ +
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 41/240 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
+I + N++ + I N+ + ++G +GAGKSTL+ + P
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 454 SVGMVR---------KNSHLRFARYH-----QHLHELLDLDIS---------PLDYMLQS 490
+ G V S L AR QH + LL S PL+ L +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN-LLS---SRTVFGNVALPLE--LDN 134
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTN 549
P+ + + + +++ GL + P LS GQK RV A LA P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASN-PKVLLCDQATS 192
Query: 550 HLDMET---IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
LD T I L IN GL +L++H+ ++ ++ + + + NG++ + + + +
Sbjct: 193 ALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSE 250
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 24/98 (24%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----------- 282
SGG + R+A+ARAL P +LL D+ T+ LD T + IL
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALD----------PATTRSILELLKDINRRLG 214
Query: 283 ---VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
++I+H D + +C + + +L E F
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 7e-12
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 46/197 (23%)
Query: 416 IYRNLEF--GIDLDTR----LALVGPNGAGKSTLLNLIYGDL-TPSVGMVRKN------- 461
+ R E GI L + ++++G +G+GKSTLL ++ G L P+ G V
Sbjct: 13 VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYT 71
Query: 462 -----SHLR-------FARYHQHLHELLDLDIS-------PLDYMLQSFPEVKDREEMRK 502
S LR F ++ L+ +++ P+ P+ + +E
Sbjct: 72 NEKELSLLRNRKLGFVFQFHY-----LIP-ELTALENVIVPMLK--MGKPKKEAKERGEY 123
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDAL 559
++ GL + P +LS G++ RV A P LL DEPT +LD + +
Sbjct: 124 LLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 560 ADAINDFEGGLVLVSHD 576
IN+ +V+V+H+
Sbjct: 183 FLKINEGGTSIVMVTHE 199
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
++ N G E+L+ L + G ++G +GSGKSTLL +LG + P +
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEK---------LAEQLVACEDDESQEQL 193
++ + + + +R K L +L A E+ +
Sbjct: 65 GKEVDYTNEKELS---------------LLRNRKLGFVFQFHYLIPELTALENVI----V 105
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
+ A+ R +L LG ++ +K + SGG + R+A+ARAL +P L
Sbjct: 106 PMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPIL 161
Query: 254 LLLDEPTNHLD 264
L DEPT +LD
Sbjct: 162 LFADEPTGNLD 172
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 79/204 (38%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVG 456
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI Y P G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENG 64
Query: 457 MVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG---------- 505
V L+D D++ D +R+ +G
Sbjct: 65 QV-----------------LIDGHDLALAD--PNW---------LRRQVGVVLQDNVLLN 96
Query: 506 -------RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVF 531
G ++V I +L +G Q+ R+
Sbjct: 97 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156
Query: 532 AYLAWQAPHLLLLDEPTNHLDMET 555
A P +L+ DE T+ LD E+
Sbjct: 157 ARALVNNPKILIFDEATSALDYES 180
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 61/190 (32%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTRE 152
+L + L + G G++G +GSGKSTL ++ G +V + D D+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG--QVLI-DGHDLALAD-- 77
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQ--LVACEDDESQEQLM---DIYD--RLDDISA 205
L Q +V Q+ ++ I D L +
Sbjct: 78 ---------------------PNWLRRQVGVV------LQDNVLLNRSIIDNISLANPGM 110
Query: 206 DTAE----ARAANILHGLGFTKEMQQK-KTK------DFSGGWRMRIALARALYVKPHLL 254
+ A+ A H F E+++ T SGG R RIA+ARAL P +L
Sbjct: 111 SVEKVIYAAKLAGA-HD--FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167
Query: 255 LLDEPTNHLD 264
+ DE T+ LD
Sbjct: 168 IFDEATSALD 177
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 43/190 (22%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDL-TPSVGMVRKN------------SHLR 465
++L+ + ++++GP+G+GKST+LN+I G L P+ G V + + +R
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 466 -------FARYHQHLHELLDLDIS-------PLDYMLQSFPEVKDREEM-RKIIGRYGLT 510
F +++ L+ ++ PL + + ++R + + + L
Sbjct: 82 RDKIGFVFQQFN-----LIP-LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFE 567
R QLS GQ+ RV A P ++L D+PT LD +T I L +N+ +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 568 GG-LVLVSHD 576
G +V+V+HD
Sbjct: 196 GKTVVVVTHD 205
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 33/156 (21%)
Query: 123 GSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK- 176
GSGKST+L ++G + P D+I L + ++R +K
Sbjct: 41 GSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT---------------KIRRDKI 85
Query: 177 --------LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQK 228
L L A E+ E L I+ +S + RA L +
Sbjct: 86 GFVFQQFNLIPLLTALENVE----LPLIFKYRGAMSGEERRKRALECLKMAELEERFANH 141
Query: 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
K SGG + R+A+ARAL P ++L D+PT LD
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 65/266 (24%), Positives = 95/266 (35%), Gaps = 102/266 (38%)
Query: 393 GKIPPPV---IMVQNVSFRY--SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
G P + + V F Y P + + L + LALVG +G GKST++ L+
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 448 ---YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKI 503
Y P G V LD +I L+ +Q R
Sbjct: 1080 ERFY---DPMAGSV-----------------FLDGKEIKQLN--VQWL---------RAQ 1108
Query: 504 IG-----------------RYGLTGRQ-------QVCPI--------------------- 518
+G YG R +
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 519 -RQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADAINDFEGGL--V 571
QLS GQK R+ A +A PH+LLLDE T+ LD E+ + +A++ G +
Sbjct: 1169 GTQLSGGQKQRIAIA----RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224
Query: 572 LVSHDFRL--INQVAEEIWICENGKV 595
+++H RL I Q A+ I + +NGKV
Sbjct: 1225 VIAH--RLSTI-QNADLIVVIQNGKV 1247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 210 ARAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
A+ ANI F + K K SGG + RIA+ARAL +PH+LLLDE T+
Sbjct: 1145 AKEANIHQ---FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 263 LD 264
LD
Sbjct: 1202 LD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 86/257 (33%)
Query: 393 GKIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI- 447
G P + + +N+ F Y S I + L + +ALVG +G GKST + L+
Sbjct: 378 GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 448 --YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKII 504
Y P GMV +D DI ++ V+ +R+II
Sbjct: 438 RLY---DPLDGMV-----------------SIDGQDIRTIN--------VRY---LREII 466
Query: 505 G-----------------RYGLTG--RQQV---CP-------IRQL-------------- 521
G RYG ++ I +L
Sbjct: 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 522 -SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
S GQK R+ A + P +LLLDE T+ LD E+ + A++ G ++++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 579 LINQVAEEIWICENGKV 595
+ + A+ I + G +
Sbjct: 587 TV-RNADVIAGFDGGVI 602
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + RIA+ARAL P +LLLDE T+ LD
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALD 558
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 81/245 (33%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV F Y+D +++ F + LALVGP+GAGKST+L L++ S G +R
Sbjct: 54 IEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG-------------- 505
+ DIS S +R IG
Sbjct: 113 IDGQ----------------DIS--QVTQAS---------LRSHIGVVPQDTVLFNDTIA 145
Query: 506 ---RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVFAYLA 535
RYG +V I +G +K RV A
Sbjct: 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL---INQVAEEIWIC 590
+AP ++LLDE T+ LD A+ ++ ++V+H RL +N A++I +
Sbjct: 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--RLSTVVN--ADQILVI 261
Query: 591 ENGKV 595
++G +
Sbjct: 262 KDGCI 266
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISH 287
SGG + R+A+AR + P ++LLDE T+ LD ++ L R ++++H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 81/206 (39%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSV 455
++ ++V F Y DD I R++ F ++ +A GP+G GKST+ +L+ Y P+
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---QPTA 56
Query: 456 GMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG--------- 505
G + +D I + L+++ R IG
Sbjct: 57 GEI-----------------TIDGQPID--NISLENW---------RSQIGFVSQDSAIM 88
Query: 506 --------RYGLTG---RQQVCP----------IRQLSDG---------------QKCRV 529
YGL G + + + + D Q+ R+
Sbjct: 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMET 555
A + P +L+LDE T LD E+
Sbjct: 149 AIARAFLRNPKILMLDEATASLDSES 174
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 9e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+A+ARA P +L+LDE T LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 83/206 (40%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVG 456
I + +VSF+Y+D+ I +++ I+ +A VG +G GKSTL+NLI Y D + G
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D--VTSG 396
Query: 457 MVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG---------- 505
+ L+D +I D++ S +R IG
Sbjct: 397 QI-----------------LIDGHNIK--DFLTGS---------LRNQIGLVQQDNILFS 428
Query: 506 -------RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVF 531
G ++V I L G QK R+
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 532 A--YLAWQAPHLLLLDEPTNHLDMET 555
A +L P +L+LDE T+ LD+E+
Sbjct: 489 ARIFLN--NPPILILDEATSALDLES 512
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 7e-10
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 10/173 (5%)
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
+ +E +++K + E +I+
Sbjct: 158 REVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFT 217
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA------RALYVKPHLLL 255
+ RA L E +++ SGG R+ + LA L + LL+
Sbjct: 218 EGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI 277
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHLDKR 305
LDEPT +LD + L ++ Y + ++++SH ++ + ++I +
Sbjct: 278 LDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA-DHVIRISLE 329
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC-------PIRQL 521
++ + +S + + + +++ R + P+ L
Sbjct: 190 VKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL 249
Query: 522 SDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LV 571
S G++ + A YLA + LL+LDEPT +LD E L + + ++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 572 LVSHDFRLINQVAEEI 587
LVSHD L + I
Sbjct: 309 LVSHDEELKDAADHVI 324
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 63/231 (27%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++++NV+ + + G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 460 KNSHLRFA------------------------RYHQHLHE-LLDLDISPLDYMLQSFPEV 494
+ + F RY + L+ D + F E
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-------ISKFAE- 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
KD +G G+T LS GQ+ R+ A ++ L LLD P +LD+
Sbjct: 119 KDNIV----LGEGGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 555 TIDALADAINDFE---GGL------VLVSHDFRLINQVAEEIWICENGKVT 596
T + FE L +LV+ + + A++I I G
Sbjct: 165 TEKEI------FESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSY 208
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG R RI+LARA+Y L LLD P +LD ++CV + + RILV +
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 187
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+ L I+ L + +Y G + + +
Sbjct: 188 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLQPDFSS 225
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 194 MDIYDR----LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+ +Y L ++ + R + LG + +K SGG R R+ALARAL +
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVI 143
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
+P LLLLDEP + +DL L EEL+ +R + ++H
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 52/169 (30%), Positives = 66/169 (39%), Gaps = 60/169 (35%)
Query: 421 EFGIDLDTR-----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
F +++D L+GP GAGKS L LI G + P G VR
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---------------- 56
Query: 476 LLDLDISPL------------DYMLQSFP------------------EVKDR-EEMRKII 504
L DI+PL DY L FP E R EM + +
Sbjct: 57 LNGADITPLPPERRGIGFVPQDYAL--FPHLSVYRNIAYGLRNVERVERDRRVREMAEKL 114
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
G L R+ +LS G++ RV A L Q P LLLLDEP + +D
Sbjct: 115 GIAHLLDRK----PARLSGGERQRVALARALVIQ-PRLLLLDEPLSAVD 158
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ +NV+F Y RN+ I +ALVG +G+GKST+ +LI
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 197 YDRLDDISADTAE--ARAANILHGLGFTKEMQQK-KTK------DFSGGWRMRIALARAL 247
Y R ++ S + E AR A + F +M T SGG R RIA+ARAL
Sbjct: 439 YARTEEYSREQIEEAARMAYAMD---FINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 248 YVKPHLLLLDEPTNHLD 264
+L+LDE T+ LD
Sbjct: 496 LRDSPILILDEATSALD 512
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ V++V+F Y ++ F I +ALVG +G+GKST+ NL
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+A+ARAL +L+LDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI- 146
+ + + + G E+L+ L+ G ++G +GSGKST L + E P I +
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 147 -FHLTREMPASDKSALTCVMEVDEERVR----------------LEKLAEQLVACEDDES 189
++ + + ++ R R LE + E +
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI------- 119
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
++ +S A RA L +G + Q K SGG + R+++ARAL +
Sbjct: 120 ---------QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 250 KPHLLLLDEPTNHLD 264
+P +LL DEPT+ LD
Sbjct: 171 EPDVLLFDEPTSALD 185
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 47/214 (21%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFARY-HQHLHEL 476
G+ L R ++++G +G+GKST L I PS G + ++ R L
Sbjct: 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83
Query: 477 LDLDISPLDYML----QSF---------------P-EVK--DREEMRKI----IGRYGLT 510
+ L L Q F P +V + + R+ + + G+
Sbjct: 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 511 GRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDME-------TIDALADA 562
R Q LS GQ+ RV A LA + P +LL DEPT+ LD E + LA+
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPELVGEVLRIMQQLAE- 201
Query: 563 INDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EG +V+V+H+ V+ + GK+
Sbjct: 202 ----EGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-09
Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 52/243 (21%)
Query: 390 PSCGKIPP-----PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDT----RLALVGPNGAGK 440
S G +P +I V + + L+ GI++ + ++GP+G+GK
Sbjct: 10 HSSGLVPRGSHMLQMIDVHQLKKSFGS-----LEVLK-GINVHIREGEVVVVIGPSGSGK 63
Query: 441 STLL---NL----------IYG-DLTPS----------VGMVRKNSHLRFARYHQHLHEL 476
ST L NL I G +L VGMV + +L F H+ L
Sbjct: 64 STFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL-FP----HMTVL 118
Query: 477 LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLA 535
++ ++P+ ++ +P K + +++ + GL + P LS GQ RV A LA
Sbjct: 119 NNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALA 175
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICEN 592
+ P ++L DEPT+ LD E + + + G+ V+V+H+ +V + + +
Sbjct: 176 ME-PKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDG 234
Query: 593 GKV 595
G +
Sbjct: 235 GYI 237
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ AEA+A +L +G K+ SGG R+A+ARAL ++P ++L DEPT+
Sbjct: 131 WPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
Query: 263 LD 264
LD
Sbjct: 190 LD 191
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 84/247 (34%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
I +V+F Y +++ F I T ALVG G+GKST+ L+Y
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY---------- 67
Query: 459 RKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG------------ 505
RF Y + +++ Y S +R IIG
Sbjct: 68 ------RF--YDAEGDIKIGGKNVN--KYNRNS---------IRSIIGIVPQDTILFNET 108
Query: 506 -----RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVFAY 533
YG ++V I L ++ R+ A
Sbjct: 109 IKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL---INQVAEEIW 588
+ P +++ DE T+ LD +T A+ D L++++H RL + AE I
Sbjct: 169 CLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--RLSTISS--AESII 224
Query: 589 ICENGKV 595
+ GK+
Sbjct: 225 LLNKGKI 231
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R RIA+AR L P +++ DE T+ LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 66/193 (34%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
I V Y R++ G+ R + L+GP+G+GK+T+L LI G P
Sbjct: 13 MTIEFVGVEKIYPGG----ARSVR-GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP 67
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPL------------DYMLQSFP--------- 492
+ G V + ++ L +Y L F
Sbjct: 68 TKGDVW----------------IGGKRVTDLPPQKRNVGLVFQNYAL--FQHMTVYDNVS 109
Query: 493 -----------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAP 539
E+ R E+ + + R +LS GQ+ RV A LA + P
Sbjct: 110 FGLREKRVPKDEMDARVRELLRFMRLESYANRF----PHELSGGQQQRVALARALAPR-P 164
Query: 540 HLLLLDEPTNHLD 552
+LL DEP +D
Sbjct: 165 QVLLFDEPFAAID 177
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 194 MDIYD------RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALAR 245
M +YD R + D +AR +L L + + SGG + R+ALAR
Sbjct: 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE---SYANRFPHELSGGQQQRVALAR 158
Query: 246 ALYVKPHLLLLDEPTNHLDL 265
AL +P +LL DEP +D
Sbjct: 159 ALAPRPQVLLFDEPFAAIDT 178
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 51/226 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N +F ++ P + F I +A+VG G GKS+LL+ + ++ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 460 --------------KNSHLR----F------ARYHQHLHELLDLDISPLDYMLQSFPEVK 495
+N LR F Y + L L+ P
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRS------VIQACALLPDLEILPS-G 116
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
DR E IG G+ LS GQK RV A + + L D+P + +D
Sbjct: 117 DRTE----IGEKGVN----------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 556 IDALADAINDFEGGL-----VLVSHDFRLINQVAEEIWICENGKVT 596
+ + + +G L +LV+H + Q + I + GK++
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKIS 207
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG + R++LARA+Y + L D+P + +D + + + LK RILV +
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV--T 186
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQ 338
HS +L II + K+ G+Y+ ++ Y
Sbjct: 187 HSMSYLP-QVDVIIVMSGGKISEM-GSYQELLARDGA-FAEFLRTYASHHHH 235
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 199 RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
R +L G+ E+ + + SGG + R ALARAL P L+LL
Sbjct: 106 GNGKGRTAQERQRIEAMLELTGIS---ELAGRYPHELSGGQQQRAALARALAPDPELILL 162
Query: 257 DEPTNHLDLDACVWLEEELKTYKRIL-------VIISHSQD 290
DEP + LD + E++ L V +SH ++
Sbjct: 163 DEPFSALDEQLRRQIREDM---IAALRANGKSAVFVSHDRE 200
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 51/223 (22%), Positives = 76/223 (34%), Gaps = 71/223 (31%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
+ + ++S + + L I L L ++G +G GK+TLL + G P
Sbjct: 3 AALHIGHLSKSFQN-----TPVLN-DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP 56
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYML-----------QS---FP------- 492
G + L I + L Q FP
Sbjct: 57 DSGEIS----------------LSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRN 100
Query: 493 -------------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQ 537
+ + R E M ++ G L GR +LS GQ+ R A LA
Sbjct: 101 IAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY----PHELSGGQQQRAALARALAPD 156
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGL--VLVSHD 576
P L+LLDEP + LD + + + + G V VSHD
Sbjct: 157 -PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 58/165 (35%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
+ L ++GP GAGK+ L LI G P G + L
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL----------------LDG 61
Query: 479 LDISPL------------DYMLQSFP-----------------EVKDR-EEMRKIIGRYG 508
D++ L +Y L FP + R + + +
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSL--FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
L R LS G++ RV A L P +LLLDEP + LD
Sbjct: 120 LLDRN----PLTLSGGEQQRVALARALVTN-PKILLLDEPLSALD 159
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
SGG + R+ALARAL P +LLLDEP + LD
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDP 160
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+NV F Y P + +++ F I ++ALVGP G+GK+T++NL+
Sbjct: 358 KNVWFSYDKKKPVL-KDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 55/266 (20%), Positives = 84/266 (31%), Gaps = 95/266 (35%)
Query: 390 PSCGKIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445
S P + + Q+VSF Y + + + L F + ALVGPNG+GKST+
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 446 LI---YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMR 501
L+ Y P+ G V LLD + D +
Sbjct: 64 LLQNLY---QPTGGKV-----------------LLDGEPLVQY-----------DHHYLH 92
Query: 502 KIIG-----------------RYGLTG---RQQVCP----------IRQL---------- 521
+ YGLT +++ I
Sbjct: 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 522 -----SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM--ETI--DALADAINDFEGGLVL 572
S GQ+ V A + P LL+LD T+ LD + L ++ VL
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL-YESPEWASRTVL 211
Query: 573 V-SHDFRL--INQVAEEIWICENGKV 595
+ + +L + A I + G V
Sbjct: 212 LITQ--QLSLA-ERAHHILFLKEGSV 234
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 197 YDRLDDISAD--TAEARAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIALARAL 247
Y + + TA A + H F Q SGG R +ALARAL
Sbjct: 115 YGLTRTPTMEEITAVAMESGA-HD--FISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171
Query: 248 YVKPHLLLLDEPTNHLDL-------DACVWLEEELKTYKRILVIISH 287
KP LL+LD T+ LD L E + R +++I+
Sbjct: 172 IRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLITQ 215
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 63/206 (30%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN---- 445
PS G++ V++++ +Y++ G I N+ F I R+ L+G G+GKSTLL+
Sbjct: 15 PSGGQM-----TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 446 --------LIYGDLTPSVGMVRKNSHLRFARYHQHLHEL-LDLDISPLDYMLQS------ 490
I G S+ L + + P + S
Sbjct: 70 LLNTEGEIQIDGVSWDSIT----------------LEQWRKAFGVIPQKVFIFSGTFRKN 113
Query: 491 ---FPEVKDRE--------EMRKIIGRY--GLTGRQQVCPIRQ----LSDGQKCRVVFAY 533
D+E +R +I ++ L + LS G K + A
Sbjct: 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLD-----FVLVDGGCVLSHGHKQLMCLAR 168
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDAL 559
+LLLDEP+ HLD T +
Sbjct: 169 SVLSKAKILLLDEPSAHLDPVT-YQI 193
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
S G + + LAR++ K +LLLDEP+ HLD
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALA 244
+ E +I+ + RA + + + + SGG R+ + LA
Sbjct: 12 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF--LSGGERIALGLA 69
Query: 245 ------RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDF 291
L + LL+LDEPT +LD + L ++ Y + ++++SH ++
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 125
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 468 RYHQHL-HELLDLDISPLDYMLQSFPEVKDREEMRKIIG---RYGLTGRQQVCPIRQLSD 523
+Y L + F E K E + + R + + P+ LS
Sbjct: 1 KYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSG 60
Query: 524 GQKCRVVFAY------LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVS 574
G++ + A+ LL+LDEPT +LD E L + + ++LVS
Sbjct: 61 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120
Query: 575 HDFRLI 580
HD L
Sbjct: 121 HDEELK 126
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
+ ++ +S + R A IL + ++ SG + R+ALA
Sbjct: 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD----IHHVLNHFPRELSGAQQQRVALA 152
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL P LLLLDEP ++LD
Sbjct: 153 RALVKDPSLLLLDEPFSNLD 172
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+NV FRY ++ + + F + + +A++G G+GKSTL+NLI
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 64/167 (38%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRFAR-- 468
GIDL + L+G NGAGK+T L+ I G + G + K +H+
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 469 -----------------------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
Y++ E + D L+++ FP +K+R K +G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFPRLKER---LKQLG 137
Query: 506 RY--GLTGRQQVCPI-RQL-SDGQKCRVVFAYLAWQAPHLLLLDEPT 548
G G QQ+ I R L S P LL++DEP+
Sbjct: 138 GTLSG--GEQQMLAIGRALMSR---------------PKLLMMDEPS 167
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 63/241 (26%)
Query: 390 PSCGKIPPPVIMVQNVSFR-YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
++SF +S G + +++ F I+ LA+ G GAGK++LL +I
Sbjct: 26 KQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 449 GDLTPSVGMVRKNSHLRFA-----------------------RYHQHLHE-LLDLDISPL 484
G+L PS G ++ + + F RY + L+ D
Sbjct: 86 GELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---- 141
Query: 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
+ F E KD +G G+T LS GQ+ R+ A ++ L LL
Sbjct: 142 ---ISKFAE-KDNIV----LGEGGIT----------LSGGQRARISLARAVYKDADLYLL 183
Query: 545 DEPTNHLDMETIDALADAINDFE---GGL------VLVSHDFRLINQVAEEIWICENGKV 595
D P +LD+ T + FE L +LV+ + + A++I I G
Sbjct: 184 DSPFGYLDVLTEKEI------FESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSS 236
Query: 596 T 596
Sbjct: 237 Y 237
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG R RI+LARA+Y L LLD P +LD ++CV + + RILV +
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 216
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+ L I+ L + +Y G + R +
Sbjct: 217 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLRPDFSS 254
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 166 EVDEERVRLEKLAEQLVACEDDES--QEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
++ + L+K+ ++ + I L++ ++ + L +
Sbjct: 209 KLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR 268
Query: 224 EMQQKKTKD---FSGGWRMRIALARAL-------YVKPHLLLLDEPTNHLDLDACVWLEE 273
SGG ++ +AL+ L + ++LDEPT +LD + L E
Sbjct: 269 VHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE 328
Query: 274 ELKTYKRI--LVIISHSQDF 291
+ K I ++II+H ++
Sbjct: 329 IFRKVKSIPQMIIITHHREL 348
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 10/149 (6%)
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ R + + L L+ F E+ K + V I
Sbjct: 221 RRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR-VHAPNGVLTID 279
Query: 520 QLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--L 570
LS G++ V + L ++LDEPT +LD LA+ + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 571 VLVSHDFRLINQVAEEIWICENGKVTKWE 599
++++H L + I + ++G V+K +
Sbjct: 340 IIITHHRELEDVADVIINVKKDGNVSKVK 368
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +Y L + + + A +L + ++ + SGG + R+A+A
Sbjct: 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKML-HID---KLLNRYPWQLSGGQQQRVAIA 145
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL +P +LLLDEP ++LD
Sbjct: 146 RALVKEPEVLLLDEPLSNLD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +Y+ ++ D + R AA +L + E+ + SGG R R+A+A
Sbjct: 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELL-QIE---ELLNRYPAQLSGGQRQRVAVA 153
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RA+ V+P +LL+DEP ++LD
Sbjct: 154 RAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +YD +L + + R A +L GL E+ +K ++ SGG R R+AL
Sbjct: 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-GLT---ELLNRKPRELSGGQRQRVALG 151
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RA+ KP + L+DEP ++LD
Sbjct: 152 RAIVRKPQVFLMDEPLSNLD 171
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +++ R IS D E R A L + + +K SGG + R+ALA
Sbjct: 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKL-LID---NLLDRKPTQLSGGQQQRVALA 145
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL +P +LL DEP ++LD
Sbjct: 146 RALVKQPKVLLFDEPLSNLD 165
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.84 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.81 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.79 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.78 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.77 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.77 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.76 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.75 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.74 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.74 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.71 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.7 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.69 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.69 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.67 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.67 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.67 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.65 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.63 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.61 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.61 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.6 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.57 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.57 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.57 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.56 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.53 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.52 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.51 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.49 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.49 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.48 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.45 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.42 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.42 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.41 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.41 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.4 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.37 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.37 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.36 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.35 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.35 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.32 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.32 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.31 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.31 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.31 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.31 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.3 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.29 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.28 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.28 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.24 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.23 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.21 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.17 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.17 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.17 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.16 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.16 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.16 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.14 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.14 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.13 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.12 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.11 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.11 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.11 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.07 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.06 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.05 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.05 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.04 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.04 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.04 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.02 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.02 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.98 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.98 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.98 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.98 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.98 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.96 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.95 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.95 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.94 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.93 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.92 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.92 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.9 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.87 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.86 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.86 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.85 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.82 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.8 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.79 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.77 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.77 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.75 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.74 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.74 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.69 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.69 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.68 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.65 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.65 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.62 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.59 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.58 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.57 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.57 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.54 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.53 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.53 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.51 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.5 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.48 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.47 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.46 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.46 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.43 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.43 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.42 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.4 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.39 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.37 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.35 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.35 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.31 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.31 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.28 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.27 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.25 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.25 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.23 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.23 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.22 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.21 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.18 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.18 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.13 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.09 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.08 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.06 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.06 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.06 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.06 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.05 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.04 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.03 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.02 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.01 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.01 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.0 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.99 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.99 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.98 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.97 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.97 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.93 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.91 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.88 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.88 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.87 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.85 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.84 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.84 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.83 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.82 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.82 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.82 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.82 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.8 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.79 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.79 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.76 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.76 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.76 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.75 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.74 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.71 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.69 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.67 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.67 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.67 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.65 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.64 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.63 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.63 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.63 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.63 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.62 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.6 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.6 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.59 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.57 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.55 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.55 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.55 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.54 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.51 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.49 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.39 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.39 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.37 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.37 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.35 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.33 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.31 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.29 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.26 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.26 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.25 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.23 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.22 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.21 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.16 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.16 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.13 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.13 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.07 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.07 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.06 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.04 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.04 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.01 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.99 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.99 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.97 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.96 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.96 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.92 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.92 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.92 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.91 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.91 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.9 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.89 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.88 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.86 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.86 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.86 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.84 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.83 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.83 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.81 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.76 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.76 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.75 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.74 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.74 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.73 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.73 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.72 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.68 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.68 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.67 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.65 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.64 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.63 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.58 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.57 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.57 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.56 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.55 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.55 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.54 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.54 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.54 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.52 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.5 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.49 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.44 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.43 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.42 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.42 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.39 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.37 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.34 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.32 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.32 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.27 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.27 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.25 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.25 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.24 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.21 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.18 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.18 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.17 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.16 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.11 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.04 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.03 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.02 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.0 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.97 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.92 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.9 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.89 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.89 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.87 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.87 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-77 Score=693.98 Aligned_cols=427 Identities=35% Similarity=0.606 Sum_probs=323.5
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCCceEEEeecccCCCCCcchhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV---PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~---p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
..|...|++++|+++.+|+|+||+|++|+++||+||||||||||||+|+|... +..+.+.+.+..++...
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~------- 506 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG------- 506 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC-------
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc-------
Confidence 45888899999999999999999999999999999999999999999985211 11111111111111000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.....+..+++. . .. .. . ..++.++|+.+||..+..++++.+|||||||||+
T Consensus 507 --------------------~~~~ltv~e~l~-~--~~--~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRva 558 (986)
T 2iw3_A 507 --------------------THSDTSVLDFVF-E--SG--VG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA 558 (986)
T ss_dssp --------------------CCTTSBHHHHHH-T--TC--SS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHH
T ss_pred --------------------cccCCcHHHHHH-H--hh--cC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHH
Confidence 000011111111 0 11 11 1 4678899999999656789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~ 322 (629)
|||||+.+|+||||||||||||+.++.+|+++|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.....
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~ 638 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP 638 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence 99999999999999999999999999999999988788999999999999999999999999999866778776532100
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCC------CCC
Q psy10512 323 ELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCG------KIP 396 (629)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 396 (629)
. ...+ .. +.. . ...+.+|.++ ...
T Consensus 639 ~----------------------~~~~-~~-----------------l~~----~------~~~~~~p~~~~~~~~~~~~ 668 (986)
T 2iw3_A 639 A----------------------AKAY-EE-----------------LSN----T------DLEFKFPEPGYLEGVKTKQ 668 (986)
T ss_dssp G----------------------GGGS-SS-----------------TTT----C------CCCCCCCCCCCCTTCCSTT
T ss_pred H----------------------HHHH-Hh-----------------hhh----h------hhhccccccccccccccCC
Confidence 0 0000 00 000 0 0011122111 123
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
.++|+++|++|.|++....+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++..+++|++|+....
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~ 748 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhh
Confidence 56899999999996422348999999999999999999999999999999999999999999999877899998874211
Q ss_pred c--CCCCCHHHHHhh-----------------------------------------------------------------
Q psy10512 477 L--DLDISPLDYMLQ----------------------------------------------------------------- 489 (629)
Q Consensus 477 ~--~~~~~~~~~~~~----------------------------------------------------------------- 489 (629)
+ ..+.++.+++..
T Consensus 749 l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~ 828 (986)
T 2iw3_A 749 IESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG 828 (986)
T ss_dssp GGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTT
T ss_pred hhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence 0 011122211100
Q ss_pred -----------------------------------------cCCChhhHHHHHHHHHHcCCCCcc-cccCcCcCChhHHH
Q psy10512 490 -----------------------------------------SFPEVKDREEMRKIIGRYGLTGRQ-QVCPIRQLSDGQKC 527 (629)
Q Consensus 490 -----------------------------------------~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkq 527 (629)
+.......+++.++|+.|||.... .++++.+|||||||
T Consensus 829 l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQ 908 (986)
T 2iw3_A 829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKV 908 (986)
T ss_dssp STTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHH
T ss_pred cccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHH
Confidence 000011245678899999997543 35678999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+||++|+|++|+++.
T Consensus 909 RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998999999999999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-76 Score=658.77 Aligned_cols=446 Identities=17% Similarity=0.246 Sum_probs=315.9
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKI-ANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i-~nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.++ +||+++|++. .+|+|+| +|++||++||+||||||||||||+|+|++.|+.|++.... . .....+.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~-~--------~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW-D--------GVIRAFR 90 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSH-H--------HHHHHTT
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcch-h--------hhHHhhC
Confidence 445 5999999886 4899999 9999999999999999999999999999999998731000 0 0000000
Q ss_pred hchHHHHHHHHHHHH--HhccCC-----h----hHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 166 EVDEERVRLEKLAEQ--LVACED-----D----ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
............... +..... + .+..++.. . ....+++.++|+.+||. ...++++.+||
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~---~------~~~~~~~~~~l~~lgl~-~~~~~~~~~LS 160 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK---K------ADETGKLEEVVKALELE-NVLEREIQHLS 160 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH---H------HCSSSCHHHHHHHTTCT-TTTTSBGGGCC
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh---h------hhHHHHHHHHHHHcCCC-hhhhCChhhCC
Confidence 000000000000000 000000 0 01111110 0 01123578899999997 56899999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEE--E
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLK--Y 309 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~--~ 309 (629)
|||||||+|||||+.+|+|||||||||+||+.++.+++++|+++ +.|||+||||++++..+||+|++|+++... .
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~ 240 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGI 240 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCccccccc
Confidence 99999999999999999999999999999999999999988765 789999999999999999999999864321 1
Q ss_pred EcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEec
Q psy10512 310 YGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTF 389 (629)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (629)
+..++..- +. +..+...... ... .. . ......+.+
T Consensus 241 ~~~~~~~~-----~~-----------------~~~~~~~~~~--------------------~~~-~~-~-~~~~~~~~~ 275 (538)
T 1yqt_A 241 FSQPKGTR-----NG-----------------INEFLRGYLK--------------------DEN-VR-F-RPYEIKFTK 275 (538)
T ss_dssp ECCCEEHH-----HH-----------------HHHHHHTEET--------------------TTT-EE-C-SSSCCCCCC
T ss_pred ccchhhHH-----HH-----------------HHHHhhhccc--------------------hhh-hc-c-ccccccccc
Confidence 11222210 00 0000000000 000 00 0 000001111
Q ss_pred cCCC--CCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEE
Q psy10512 390 PSCG--KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA 467 (629)
Q Consensus 390 ~~~~--~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~ 467 (629)
+... ....++++++|+++.|++ ..|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+ ...++
T Consensus 276 ~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~ 350 (538)
T 1yqt_A 276 TGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVA 350 (538)
T ss_dssp SSGGGSSCCCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEE
T ss_pred CCcccccCCCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEE
Confidence 1111 123568999999999953 3699999999999999999999999999999999999999999987 34689
Q ss_pred eeccchhcccCCCCCHHHHHhhc-CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQS-FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
|++|+... ....|+.+++... .......+.+.++++.+|+.+ ...+++.+|||||||||+|||||+.+|+||||||
T Consensus 351 ~v~Q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 351 YKPQYIKA--DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-LYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp EECSSCCC--CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEecCCcC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99998642 3456776655321 011112456788999999974 4567889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKE 607 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 607 (629)
||+|||+.++..++++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++...
T Consensus 428 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 99999999999999998764 67999999999999999999999986 6665 4677766543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=652.73 Aligned_cols=442 Identities=19% Similarity=0.264 Sum_probs=317.5
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 91 ANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 91 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
+||+++|++. .+|+++| +|++||++||+|||||||||||++|+|++.|+.|++.... ...+..+.....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~---------~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW---------DNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCH---------HHHHHHTTTSTH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcccccc---------chhhheeCCEeh
Confidence 8999999876 4999999 9999999999999999999999999999999998741100 000000000000
Q ss_pred HHHHHHHHHH-H--HhccCC---------hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 170 ERVRLEKLAE-Q--LVACED---------DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 170 ~~~~~~~~~~-~--~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
... ...... . +..... ..+..++.. . .....++.++|+.+||. +..++++.+|||||
T Consensus 165 ~~~-~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~------~---~~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 165 QNY-FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK------K---VDEVGKFEEVVKELELE-NVLDRELHQLSGGE 233 (607)
T ss_dssp HHH-HHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH------H---TCCSSCHHHHHHHTTCT-TGGGSBGGGCCHHH
T ss_pred hhh-hhhhhhhhcceEEeechhhhchhhccccHHHHhh------h---hHHHHHHHHHHHHcCCC-chhCCChhhCCHHH
Confidence 000 000000 0 000000 001111111 0 01123577899999997 57899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEE--EcC
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY--YGG 312 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~--~~g 312 (629)
||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++...+ +..
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~ 313 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSK 313 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceecc
Confidence 99999999999999999999999999999999999988765 7899999999999999999999998653211 111
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC
Q psy10512 313 NYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392 (629)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (629)
++... . .+..+...+... +.+ .. ......+.++..
T Consensus 314 ~~~~~----~------------------~i~~~~~~~~~~---------------~~~-------~~-~~~~~~~~~~~~ 348 (607)
T 3bk7_A 314 PKGTR----N------------------GINEFLQGYLKD---------------ENV-------RF-RPYEIRFTKLSE 348 (607)
T ss_dssp CEEHH----H------------------HHHHHHHTEETT---------------TTE-------EC-CSSCCCCCCSTT
T ss_pred chhHH----H------------------HHHHHHhhcchh---------------hhh-------hc-cccccccccCCC
Confidence 22110 0 000111100000 000 00 000111111111
Q ss_pred C--CCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeec
Q psy10512 393 G--KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470 (629)
Q Consensus 393 ~--~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~ 470 (629)
. ....++++++|+++.|++ . .|+++||+|.+||++||+||||||||||||+|+|+++|++|+|.+. ..++|++
T Consensus 349 ~~~~~~~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--~~i~~v~ 423 (607)
T 3bk7_A 349 RVDVERETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKP 423 (607)
T ss_dssp SCCCCCCEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--CCEEEEC
T ss_pred cccccCceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--eEEEEEe
Confidence 1 123468999999999953 3 6999999999999999999999999999999999999999999873 4689999
Q ss_pred cchhcccCCCCCHHHHHhhc-CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 471 QHLHELLDLDISPLDYMLQS-FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
|+... ....|+.+++... .......+.+.++|+.+|+.+. .++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 424 Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 424 QYIKA--EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SSCCC--CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCccC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 98642 3556777665432 1111224567889999999754 456889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHH
Q psy10512 550 HLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKE 607 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 607 (629)
|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |.+. ..|++++...
T Consensus 501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 99999999999998765 67999999999999999999999985 6665 4677766543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-72 Score=631.82 Aligned_cols=453 Identities=16% Similarity=0.225 Sum_probs=309.3
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
|++++|+.. ..|++++ ++++|+++||+||||||||||||+|+|++.|+.|++... ......+..+......
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~-------~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP-------PEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS-------SCHHHHHHHTTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecc-------cchhhhhheecChhhh
Confidence 467888754 3667666 689999999999999999999999999999999986310 0000001111111100
Q ss_pred HHHHHHHHHHHhc--cCCh-hHHHHH-----HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 171 RVRLEKLAEQLVA--CEDD-ESQEQL-----MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 171 ~~~~~~~~~~~~~--~~~~-~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..........+.. .+.. ...... ..+...+. ........++.++++.+|+. ...++++.+|||||||||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-HHCCSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHH
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-hhhhhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHH
Confidence 0000000000000 0000 000000 00000000 00112235788999999997 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE--cCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY--GGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~--~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+. ..++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~- 310 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV- 310 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH-
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH-
Confidence 999999999999999999999999999999988765 68999999999999999999999987654321 111110
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCC
Q psy10512 318 CKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPP 397 (629)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
+ . ....+..+... .... .. ......+..+. ....
T Consensus 311 -~-------~-------------~~~~~~~~~~~--------------------~~~~--~~-~~~~~~~~~~~--~~~~ 344 (608)
T 3j16_B 311 -R-------E-------------GINIFLDGHIP--------------------AENL--RF-RTEALQFRIAD--ATED 344 (608)
T ss_dssp -H-------H-------------HHHHHHHTEET--------------------TTTE--EC-SSSCCCCCCSS--SSCC
T ss_pred -H-------H-------------HHHHhhccccc--------------------hhhh--cc-ccccccccccc--cccc
Confidence 0 0 00001110000 0000 00 00000111110 0011
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCC-----CEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD-----TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQH 472 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-----e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~ 472 (629)
..+...++++.|+.. ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. ....++|++|.
T Consensus 345 ~~~~~~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~ 421 (608)
T 3j16_B 345 LQNDSASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQK 421 (608)
T ss_dssp CCCCSSSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSS
T ss_pred eeeeccceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccc
Confidence 122225678888542 23789999999999 78999999999999999999999999999842 23468899987
Q ss_pred hhcccCCCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy10512 473 LHELLDLDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~L 551 (629)
... .+..++.+++...... ......+.++++.+++.+. .++++.+|||||||||+|||||+.+|+||||||||+||
T Consensus 422 ~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 422 IAP--KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp CCC--CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred ccc--cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 532 3345677665432221 1234567789999999865 45688999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHHH
Q psy10512 552 DMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKET 608 (629)
Q Consensus 552 D~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 608 (629)
|+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++....
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 999999999988765 67999999999999999999999996 7876 57887766554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=620.66 Aligned_cols=448 Identities=17% Similarity=0.232 Sum_probs=305.5
Q ss_pred eEEEEeCCeeeeEeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGCELLQDTMLELN-CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
+.+.+||.. -|+-..|.+. +||++|||||||||||||||+|+|++.|+.|++.... ........+......
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~-------~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-------GKDEVLKRFRGKEIY 75 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCC-------CHHHHHHHHTTSTTH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcccccc-------chhhHHhhcCCeeHH
Confidence 456788642 3555556664 9999999999999999999999999999998762100 000000000000000
Q ss_pred HHHHHHHHH-HHh--ccC---C------hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 171 RVRLEKLAE-QLV--ACE---D------DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 171 ~~~~~~~~~-~~~--~~~---~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
. ....... ... ... . ..+...+ +. ......++.++++.+|+. ...++++.+||||||
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------l~---~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 76 N-YFKELYSNELKIVHKIQYVEYASKFLKGTVNEI------LT---KIDERGKKDEVKELLNMT-NLWNKDANILSGGGL 144 (538)
T ss_dssp H-HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHH------HH---HHCCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHH
T ss_pred H-HHHHHhhcccchhhccchhhhhhhhccCcHHHH------hh---cchhHHHHHHHHHHcCCc-hhhcCChhhCCHHHH
Confidence 0 0000000 000 000 0 0000000 00 001123577899999996 578999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEE--EcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKY--YGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~--~~g~~ 314 (629)
|||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +..++
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~ 224 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY 224 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhh
Confidence 9999999999999999999999999999999999998876 7899999999999999999999998654321 11122
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCC
Q psy10512 315 EAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGK 394 (629)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (629)
.. . ..+..+...+.... .+........... ... .......
T Consensus 225 ~~--~--------------------~~~~~~~~g~~~~~---------------~~~~r~~~~~~~~-~~~--~~~~~~~ 264 (538)
T 3ozx_A 225 AA--R--------------------VGINNFLKGYLPAE---------------NMKIRPDEIKFML-KEV--SDLDLSK 264 (538)
T ss_dssp EH--H--------------------HHHHHHHHTEETTT---------------TEECSSSCCCCSC-C-----------
T ss_pred hH--H--------------------HHHHHHHhhhchhh---------------hhhccchhhhccc-ccc--ccccccc
Confidence 10 0 00011111100000 0000000000000 000 0000001
Q ss_pred CCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchh
Q psy10512 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~ 474 (629)
...++++++++++.|++ ..|..+||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|...
T Consensus 265 ~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~ 340 (538)
T 3ozx_A 265 DLKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIF 340 (538)
T ss_dssp -CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCC
T ss_pred cccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcc
Confidence 23468999999999953 368889999999999999999999999999999999999999998765 46889988753
Q ss_pred cccCCCCCHHHHHhhcCCCh--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 475 ELLDLDISPLDYMLQSFPEV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD 552 (629)
. ....++.+++....... .....+.++++.+|+... .++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 341 ~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 341 P--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp C--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred c--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 2 34567777654321111 223457788999999754 456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHH
Q psy10512 553 METIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYK 606 (629)
Q Consensus 553 ~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~ 606 (629)
+.++..++++|+++ +.|||+||||++++..+||||++|++ |.+. ..+++.+..
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~-~~~~~~~~~ 476 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG-LATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec-cCCChHHHH
Confidence 99999999998765 56899999999999999999999986 4443 344444433
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-69 Score=657.54 Aligned_cols=205 Identities=26% Similarity=0.324 Sum_probs=168.0
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
..|+++||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999642 124899999999999999999999999999999999999999999999873 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAra 534 (629)
++|++|++. .++.|+.+++....+. ....+++.+.++..++.+.... ....+|||||||||+||||
T Consensus 1109 i~~v~Q~~~---l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI---LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC---CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc---cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 899999863 2456888888654321 1234556666666655322111 1235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+.+|+||||||||+|||+.+...+.+.|++. +.|||+||||++++.. ||||++|++|+|++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999876 4699999999999955 99999999999985 688877654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-66 Score=598.70 Aligned_cols=441 Identities=22% Similarity=0.270 Sum_probs=268.8
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCCceEE-----Eeeccc
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLL---------------------AVLGNREVPVPDHIDI-----FHLTRE 152 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~L~g~~~p~~g~i~i-----~~~~~~ 152 (629)
...+|+||||+|++||++|||||||||||||+ ++++|+..|+.|.+.. ...+..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 8888888887554421 111111
Q ss_pred CCCCCcchhhhhhhchHHH----HHHHHHHH--HHhccCChhHHHHHHHHHhhhh--ccCh-------hhHHHHHHHHHH
Q psy10512 153 MPASDKSALTCVMEVDEER----VRLEKLAE--QLVACEDDESQEQLMDIYDRLD--DISA-------DTAEARAANILH 217 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~--~~~~-------~~~~~~~~~~L~ 217 (629)
........+..+.+..... .......+ ....+...+..++ ..++..+. .... .+.. ....+|+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 187 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEA-LAFFDGLELTEKEAQIARLILREIR-DRLGFLQ 187 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CH-HHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHH-HHHhhccccchhhhHHHHHHHHHHH-HHHHHHH
Confidence 1111111122222111100 00000000 0000000011111 11110000 0000 0011 1224688
Q ss_pred hCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q psy10512 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFL 292 (629)
Q Consensus 218 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l 292 (629)
.+||.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|+++|+++ +.|||+||||++++
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 267 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99997544689999999999999999999999998 99999999999999999999988654 68999999999987
Q ss_pred HhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy10512 293 NGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKT 366 (629)
Q Consensus 293 ~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (629)
. .||+|++| ++|++++.+.+.+.+... ..+.
T Consensus 268 ~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~---------------------------------~~~~--------- 304 (670)
T 3ux8_A 268 L-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP---------------------------------NSLT--------- 304 (670)
T ss_dssp H-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT---------------------------------TCHH---------
T ss_pred h-hCCEEEEecccccccCCEEEEecCHHHHhcCc---------------------------------hhHH---------
Confidence 6 59999999 899999876443221100 0000
Q ss_pred HHHHhhcCCCcccccCcceEEeccC-CCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHH
Q psy10512 367 LAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445 (629)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk 445 (629)
..........+ .+. ........+.+.+.+ ..+|+||||+|++||++||+||||||||||++
T Consensus 305 -~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 305 -GQYLSGKKFIP----------IPAERRRPDGRWLEVVGAR-------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp -HHHHTTSSCCC----------CCSSCCCCCSCEEEEEEEC-------STTCCSEEEEEETTSEEEEECSTTSSHHHHHT
T ss_pred -HHHhccccccc----------cccccccccccceeecCcc-------ccccccceeEecCCCEEEEEeeCCCCHHHHHH
Confidence 00000000000 000 001112345554432 23799999999999999999999999999998
Q ss_pred HHH----------------------cCCCCCccEEEECCcee-----------E--------------------------
Q psy10512 446 LIY----------------------GDLTPSVGMVRKNSHLR-----------F-------------------------- 466 (629)
Q Consensus 446 ~l~----------------------G~~~p~~G~i~~~~~~~-----------~-------------------------- 466 (629)
+|+ |+..+ .|.|.+++... .
T Consensus 367 ~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (670)
T 3ux8_A 367 EVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRF 445 (670)
T ss_dssp TTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGG
T ss_pred HHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccc
Confidence 764 33322 23454433110 0
Q ss_pred ---------------Eeeccchhcc------------------------------cCCCCCHHHHHhhcCCChhhHHHHH
Q psy10512 467 ---------------ARYHQHLHEL------------------------------LDLDISPLDYMLQSFPEVKDREEMR 501 (629)
Q Consensus 467 ---------------~~~~q~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (629)
+++.+..... ....+++.+++.... ......+..
T Consensus 446 ~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~ 524 (670)
T 3ux8_A 446 SFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-SIPKIKRKL 524 (670)
T ss_dssp CTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTT-TCHHHHHHH
T ss_pred cccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHH-HhhhHHHHH
Confidence 0000000000 000123333332211 112234566
Q ss_pred HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEec
Q psy10512 502 KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSH 575 (629)
Q Consensus 502 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsH 575 (629)
+.+..+|+......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|+++ +.|||+|||
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 604 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 788899997554567889999999999999999998875 99999999999999999999998765 579999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 576 DFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 576 d~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
|++++ ..||||++| ++|+|+ +.|+++++.
T Consensus 605 d~~~~-~~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 605 NLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp CHHHH-TTCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred CHHHH-HhCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 99988 469999999 899997 578887754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=616.51 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=172.4
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
-|+++||+|+|+.+ ..++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.++|. ..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999643 224899999999999999999999999999999999999999999999983 368
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCccc------ccC----cCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQ------VCP----IRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~------~~~----~~~LSgGqkqrv~lAral 535 (629)
++++|++. -++-|+.+++..+. +.....+++.++++..++.+... +.+ ...||||||||++|||||
T Consensus 1156 ~~V~Qdp~---LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT---LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE---eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999864 34568899886543 23345677888888887743211 112 247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+++|+||||||||++||+++-..+.+.|++. +.|+|+|+|.++.+.. ||+|+||++|+|++ .|+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999886 5799999999999964 99999999999986 689888754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=499.01 Aligned_cols=333 Identities=19% Similarity=0.241 Sum_probs=237.9
Q ss_pred HHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEE
Q psy10512 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELK---TYKRIL 282 (629)
Q Consensus 208 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~---~~~~tv 282 (629)
+..++. .|..+||.....++++.+|||||+|||+||++|+.+|+ ||||||||++||+..+.+|++.|+ +.+.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344554 68899996333689999999999999999999999994 999999999999999999998664 458899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHH
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKL 356 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (629)
|+||||++++. .||+|++| ++|++++. |+++.+....... ...+
T Consensus 435 IvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~-g~~~~~~~~~~~~-----------------~~~~----------- 484 (842)
T 2vf7_A 435 FVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYS-GPPEGLKHVPESQ-----------------TGQY----------- 484 (842)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEE-ECGGGGGGCTTCH-----------------HHHH-----------
T ss_pred EEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEe-cCHHHHHhchHHH-----------------HHHH-----------
Confidence 99999999775 79999999 78888865 5555443210000 0000
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCC
Q psy10512 357 ARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPN 436 (629)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~N 436 (629)
+... .... +.....+.++|+++|+++ . +|+||||+|+.|+++||+|+|
T Consensus 485 -------------l~~~---~~~~---------~~~~~~~~~~L~v~~l~~------~-~L~~vsl~i~~Geiv~I~G~n 532 (842)
T 2vf7_A 485 -------------LFAD---RHTE---------PHTPREPAGWLELNGVTR------N-NLDNLDVRFPLGVMTSVTGVS 532 (842)
T ss_dssp -------------HHTC---CCCC---------CCCCCCCSCEEEEEEEEE------T-TEEEEEEEEESSSEEEEECCT
T ss_pred -------------hhhc---cccc---------ccccCCCCceEEEEeeee------c-ccccceEEEcCCCEEEEEcCC
Confidence 1110 0000 000112356899999985 1 499999999999999999999
Q ss_pred CCchHHHHHH-HHcCC-------CCC------------------cc-------EEEECCcee------------------
Q psy10512 437 GAGKSTLLNL-IYGDL-------TPS------------------VG-------MVRKNSHLR------------------ 465 (629)
Q Consensus 437 GsGKSTLlk~-l~G~~-------~p~------------------~G-------~i~~~~~~~------------------ 465 (629)
|||||||+++ |+|++ +|+ .| .|.+++...
T Consensus 533 GSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~i 612 (842)
T 2vf7_A 533 GSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQV 612 (842)
T ss_dssp TSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHH
Confidence 9999999996 77554 343 44 344443110
Q ss_pred ------------EEeeccchhcc--------------------cC------------------------C--------CC
Q psy10512 466 ------------FARYHQHLHEL--------------------LD------------------------L--------DI 481 (629)
Q Consensus 466 ------------~~~~~q~~~~~--------------------~~------------------------~--------~~ 481 (629)
.+|..+.+..+ +. . .+
T Consensus 613 r~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l 692 (842)
T 2vf7_A 613 RKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL 692 (842)
T ss_dssp HHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC
T ss_pred HHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc
Confidence 00000000000 00 0 01
Q ss_pred CHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHH
Q psy10512 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA---PHLLLLDEPTNHLDMETIDA 558 (629)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPT~~LD~~~~~~ 558 (629)
++.+.+. .+......+++.++|+.+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..
T Consensus 693 tv~e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 693 TVDEAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp BHHHHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred cHHHHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 1111111 1111122346788999999976444678899999999999999999996 79999999999999999999
Q ss_pred HHHHHhhc---CceEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 559 LADAINDF---EGGLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 559 l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
|+++|.++ +.|||+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 99988765 67999999999999 789999999 689997 578887764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=473.82 Aligned_cols=334 Identities=20% Similarity=0.312 Sum_probs=234.1
Q ss_pred HHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q psy10512 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELKTY---KRILVII 285 (629)
Q Consensus 211 ~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIiv 285 (629)
...+.|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+..+.+|++.|+++ |.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678899996434689999999999999999999999887 99999999999999999999998766 5799999
Q ss_pred ecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHH
Q psy10512 286 SHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQ 359 (629)
Q Consensus 286 sHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (629)
|||++++.. ||+|++| ++|++++.| +++++..... ... ..
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G-~~~e~~~~~~-----------------------------~~~--~~- 568 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQG-TVDELLKNPD-----------------------------SSL--TG- 568 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEE-CHHHHHHSCT-----------------------------TCH--HH-
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEee-chhhhhcCch-----------------------------hcc--hh-
Confidence 999999875 9999999 899998764 5444321100 000 00
Q ss_pred HHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCc
Q psy10512 360 AQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAG 439 (629)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsG 439 (629)
..+.. .... ..+.....+...+.+++++ .. .|+||||+|+.|+++||+|+||||
T Consensus 569 --------~~l~~---~~~~--------~~~~~~~~~~~~l~v~~~~------~~-~Lk~Vsl~I~~Geiv~I~G~SGSG 622 (916)
T 3pih_A 569 --------EYLSG---KRKI--------TVNKTRRLPYASLKIKGVR------HN-NLKNIDVEIPLGVFVCVTGVSGSG 622 (916)
T ss_dssp --------HHHHS---SSCC--------CCCSSCCCCSSEEEEEEEC------ST-TCCSEEEEEESSSEEEEECSTTSS
T ss_pred --------hhhhc---cccc--------ccccccccccceEEEeeec------cc-cccccceEEcCCcEEEEEccCCCC
Confidence 00001 0000 0111111123356666654 12 599999999999999999999999
Q ss_pred hHHHH---------HHHHcCCCCCccE------------EEECCce----------------------------------
Q psy10512 440 KSTLL---------NLIYGDLTPSVGM------------VRKNSHL---------------------------------- 464 (629)
Q Consensus 440 KSTLl---------k~l~G~~~p~~G~------------i~~~~~~---------------------------------- 464 (629)
||||+ +++.|...+..+. +..+...
T Consensus 623 KSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~ 702 (916)
T 3pih_A 623 KSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGY 702 (916)
T ss_dssp HHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSC
T ss_pred hhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhccc
Confidence 99997 4555544443321 1111100
Q ss_pred ------------------eEEeeccchhccc------------------------------CCCCCHHHHHhhcCCChhh
Q psy10512 465 ------------------RFARYHQHLHELL------------------------------DLDISPLDYMLQSFPEVKD 496 (629)
Q Consensus 465 ------------------~~~~~~q~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 496 (629)
..|++.+.+.... ...+++.+.+. .+.....
T Consensus 703 ~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~-f~~~~~~ 781 (916)
T 3pih_A 703 NKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE-FFKNIPS 781 (916)
T ss_dssp CGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH-HTTTCHH
T ss_pred ccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH-HHhcchh
Confidence 0001100000000 00112222111 1111122
Q ss_pred HHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceE
Q psy10512 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---EGGL 570 (629)
Q Consensus 497 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~v 570 (629)
..++.++|+.+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|++.|+++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3566788999999765556788999999999999999999876 699999999999999999999998765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 571 VLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 571 i~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|+||||++++.. ||+|++| ++|+|+ +.|+++++.+
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999999865 9999999 899997 5799877643
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=464.14 Aligned_cols=333 Identities=21% Similarity=0.265 Sum_probs=235.2
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKT---YKRILV 283 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvI 283 (629)
..++ +.|..+||.....++++.+|||||+|||+||++|..+| +||||||||++||+....+|++.|++ .|.|||
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 560 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 560 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3444 45889999633368999999999999999999999985 99999999999999999999987764 478999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLA 357 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (629)
+||||++++. .||+|++| ++|++++.| +++.+..... ....
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G-~~~e~~~~~~----------------------------slt~--- 607 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAG-TPEEVMNDPN----------------------------SLTG--- 607 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEE-CTTTTTTCTT----------------------------CTTH---
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEec-CHHHHHhhhH----------------------------HHHH---
Confidence 9999999986 69999999 789998765 4443321000 0000
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC-CCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCC
Q psy10512 358 RQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC-GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPN 436 (629)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~N 436 (629)
..|...... . +|.. .....+.|++++++. . .|+||||+|+.|+++||+|+|
T Consensus 608 ----------~~l~g~~~~-~----------~~~~~~~~~~~~L~v~~l~~------~-~Lk~Vsl~I~~Geiv~I~G~n 659 (972)
T 2r6f_A 608 ----------QYLSGKKFI-P----------IPAERRRPDGRWLEVVGARE------H-NLKNVSVKIPLGTFVAVTGVS 659 (972)
T ss_dssp ----------HHHHTSSCC-C----------CCSSCCCCCSCEEEEEEECS------S-SCCSEEEEEESSSEEECCBCT
T ss_pred ----------HHhcCCccc-c----------CccccccccceEEEEecCcc------c-ccccceEEEcCCCEEEEEcCC
Confidence 001110000 0 1111 111236899999862 2 599999999999999999999
Q ss_pred CCchHHHHHHHH-cCC-------CCCccE-------------EEECCce------------------------------e
Q psy10512 437 GAGKSTLLNLIY-GDL-------TPSVGM-------------VRKNSHL------------------------------R 465 (629)
Q Consensus 437 GsGKSTLlk~l~-G~~-------~p~~G~-------------i~~~~~~------------------------------~ 465 (629)
|||||||+++|+ |.+ .+..|. |.+++.. .
T Consensus 660 GSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~ 739 (972)
T 2r6f_A 660 GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKV 739 (972)
T ss_dssp TSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHH
Confidence 999999999854 322 123342 3333211 0
Q ss_pred EEeeccchhcccC----------------------------------------------------CCCCHHHHHhhcCCC
Q psy10512 466 FARYHQHLHELLD----------------------------------------------------LDISPLDYMLQSFPE 493 (629)
Q Consensus 466 ~~~~~q~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~ 493 (629)
.+|.+|.+..+.. ..+++.+.+.. +..
T Consensus 740 ~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~-~~~ 818 (972)
T 2r6f_A 740 RGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDF-FAS 818 (972)
T ss_dssp TTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHH-TCS
T ss_pred hcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHH-Hhc
Confidence 1222221110000 01122222211 111
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---C
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---E 567 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~ 567 (629)
.....++.++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.++ +
T Consensus 819 ~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 898 (972)
T 2r6f_A 819 IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898 (972)
T ss_dssp CHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 1122345688999999763455688999999999999999999865 999999999999999999999998765 6
Q ss_pred ceEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 568 GGLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 568 ~~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
.|||+||||++++ .+||+|++| ++|+|+ ..|+++++.
T Consensus 899 ~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 899 DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 7999999999998 579999999 689997 467776653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=378.09 Aligned_cols=207 Identities=25% Similarity=0.374 Sum_probs=176.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|+++||+++|+.+ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 3589999999999643 34899999999999999999999999999999999999999999999873
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|++...+. ..|+.+++... .+.....+++.++++.+||... .++++.+|||||||||+|||||+.+
T Consensus 84 ~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-hcCCcccCCHHHHHHHHHHHHHHcC
Confidence 248999998643333 57888876432 1222335678899999999754 4567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+||||||||+|||+.++..+++.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999998765 568999999999999999999999999997 5788877643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=370.45 Aligned_cols=203 Identities=24% Similarity=0.347 Sum_probs=170.0
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||+++|+.+. ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 489999999996432 24899999999999999999999999999999999999999999999873
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc--------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS--------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|++. +...+|+.+++... .+.....+++.++++.+|+.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14899999863 45567888876431 1112234567889999999765445678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++.+ .+||+|++|++|+++. .++..++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~ 232 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGF 232 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC--
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhh
Confidence 999999999999999999999999999998765 57999999999965 7999999999999974 5554444
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=386.92 Aligned_cols=208 Identities=20% Similarity=0.297 Sum_probs=177.4
Q ss_pred CCCCeEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------
Q psy10512 395 IPPPVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------- 463 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 463 (629)
...++|+++||++.|+.+. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3457899999999996422 34899999999999999999999999999999999999999999999873
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|++. +....|+.+++... .+.....+++.++|+.+||.+.. ++++.+|||||||||+|||
T Consensus 100 ~~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 100 LTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHH
Confidence 25899999863 55667888876432 22223456788999999997654 5678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+ ..|++.++.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999999999999998765 569999999999999999999999999997 578877653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=368.09 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=173.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------- 464 (629)
++|+++||+++|+. ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 57999999999953 358999999999999999999999999999999999999999999987631
Q ss_pred -----------eEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHH
Q psy10512 465 -----------RFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527 (629)
Q Consensus 465 -----------~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 527 (629)
.++|++|+. .+...+|+.+++... . +.....+++.++++.+|+.+...++++.+|||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH
T ss_pred cChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHH
Confidence 378888874 344567888876431 1 111234568899999999764135678999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999999999999999998765 568999999999999999999999999997 4688776
Q ss_pred HH
Q psy10512 605 YK 606 (629)
Q Consensus 605 ~~ 606 (629)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=377.83 Aligned_cols=220 Identities=22% Similarity=0.281 Sum_probs=167.9
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++||+++|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.. +.... ..
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~--i~~~~-~~----- 78 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP--IDYSR-KG----- 78 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCCSH-HH-----
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE--CCccc-cc-----
Confidence 6999999999975 469999999999999999999999999999999999999999988775432 21000 00
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
....+..+..+.++.. ..... +..+...+..........+..+++.++|+.+|+. +..++++.+|||||||||+||
T Consensus 79 -~~~~~~~ig~v~Q~~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 79 -IMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp -HHHHHHSEEEECSSGGGTCCSS-BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred -HHHHhCcEEEEEcCcccccccC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHH
Confidence 0000001111111110 11122 2333322222222344556677899999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+.+
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999887643 689999999999999999999999999999887665544
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=372.08 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.......
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--i~~~~~~~------ 95 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN--LKAKDTNL------ 95 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--SSSTTCCH------
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE--CCCccccH------
Confidence 5999999999999999999999999999999999999999999999999999999998875432 21000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
...+..+..+.+... ..+..+..++..+.. .+.........+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 96 -~~~~~~i~~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 96 -NKVREEVGMVFQRFN-LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp -HHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHH
T ss_pred -HHHhCcEEEEeCCCc-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHH
Confidence 000111111111111 112223333332211 222233344567789999999996 5789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999988654 68999999999999999999999999999876544
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=385.24 Aligned_cols=220 Identities=24% Similarity=0.295 Sum_probs=169.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+||||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+....-........
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~----- 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR----- 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG-----
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh-----
Confidence 599999999999999999999999999999999999999999999999999999999987643221000000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+..+..+++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||||+||||
T Consensus 79 ----~r~ig~vfQ~~~l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 79 ----ERRLGYLVQEGVLF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp ----GSCCEEECTTCCCC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ----hCCEEEEeCCCcCC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 00011111111122 2223333332222222334455677899999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.| ++.+.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999998887654 345889999999999999999999999999999887765544
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=365.64 Aligned_cols=203 Identities=21% Similarity=0.324 Sum_probs=173.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------- 464 (629)
++|+++||++.|+. ..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++..
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999953 358999999999999999999999999999999999999999999998731
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
.++|++|... +...+|+.+++... . +.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+
T Consensus 101 ~i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 101 EVGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-HAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HEEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHCC
Confidence 3789998753 44567888876431 1 1112345688999999997544 567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999998765 568999999999999999999999999997 468877654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=385.55 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=172.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++|++..+|+||||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+............+..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~--- 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM--- 79 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE---
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE---
Confidence 49999999999999999999999999999999999999999999999999999999988754322110000011111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
++|+...++..+..++ ..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 80 ----------VfQ~~~l~p~ltV~en-i~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 80 ----------VFQSYALYPHLSVAEN-MSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp ----------ECTTCCCCTTSCHHHH-HTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ----------EecCCcCCCCCCHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHH
Confidence 1122222222233333 32222333455566778899999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999988877654 789999999999999999999999999999887766544
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=379.32 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=175.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------e
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------L 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 464 (629)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. .
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 36999999999953 35899999999999999999999999999999999999999999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|+. .+...+|+.+++.... +.....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 81 RLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA-GRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp CCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 488999975 3556789999876532 2223456788999999998654 5678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++|||||||++||+..+..+.+.|.+ .+.|+|+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 99999999999999999988875543 4679999999999999999999999999997 5788877543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=366.85 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=176.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.++|+++||++.|+. ..+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 368999999999953 35899999999999999999999999999999999999999999999874 23
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc-----
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ----- 537 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~----- 537 (629)
++|++|... +.+..|+.+++.... ......+++.++++.+|+.+.. ++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-QRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-TSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 788888753 345678888875432 2223466788999999997654 46779999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 -APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 -~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 99999999999999999999999998776 248999999999999999999999999997 578887764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=386.45 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=170.4
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+. ++.......+
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~--~i~~~~~~~~- 100 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ--ELTTLSESEL- 100 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE--ECSSCCHHHH-
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE--ECCcCCHHHH-
Confidence 6999999999964 46999999999999999999999999999999999999999998887543 2221110000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+..+.++++....++..+..+++ .+...+......+..+++.++|+.+||. +..++++.+|||||||||+
T Consensus 101 -----~~~r~~Ig~v~Q~~~l~~~~TV~env-~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 101 -----TKARRQIGMIFQHFNLLSSRTVFGNV-ALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp -----HHHHTTEEEECSSCCCCTTSCHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHH
T ss_pred -----HHHhCcEEEEeCCCccCCCCCHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHH
Confidence 00011111111221112222333333 3333333445566678899999999996 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|++++.|.+.+.+
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999988654 789999999999999999999999999999876555443
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=371.20 Aligned_cols=220 Identities=24% Similarity=0.338 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCC-----C---Cc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA-----S---DK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~-----~---~~ 158 (629)
+|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+.. +.. . ..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN--INLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--cccccccccccccc
Confidence 5999999999999999999999999999999999999999999999999999999998875422 110 0 00
Q ss_pred chhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhccChhhHHHHHHHHHHhCCCCchh-hhcccCCCChH
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDDISADTAEARAANILHGLGFTKEM-QQKKTKDFSGG 236 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~L~~lgl~~~~-~~~~~~~LSGG 236 (629)
... .....+..+..+.+... ..+..+..++..+.. ...........+++.++++.+|+. +. .++++.+||||
T Consensus 84 ~~~----~~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 84 DKN----QLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGG 157 (262)
T ss_dssp CHH----HHHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHH
T ss_pred Chh----hHHHHhcceEEEecCcc-cCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHH
Confidence 000 00000111111111111 112223333332211 222233344567789999999997 56 79999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999988654 68999999999999999999999999999977554
Q ss_pred H
Q psy10512 314 Y 314 (629)
Q Consensus 314 ~ 314 (629)
.
T Consensus 238 ~ 238 (262)
T 1b0u_A 238 E 238 (262)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=370.14 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=175.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|+++||++.|+. ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 458999999999953 35899999999999999999999999999999999999999999999863
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
..++|++|.....+....|+.+++.... +.....+++.++++.+|+... .++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-AQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHH
Confidence 2478999976433334568888875421 111234568889999999754 456789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceE--EEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~v--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+.+|+||||||||+|||+.++..+++.|.++ +.|| |+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999998776 5689 99999999999999999999999997 468777653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=356.52 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=167.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 463 (629)
++|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999953 35899999999999999999999999999999999999999999998762
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +....|+.+++... .+.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-SRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 24889998753 44567888876431 11112345688999999997654 56789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecC
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 600 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++ .+||++++|++|+++. .|
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~-~g 221 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG-EI 221 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-Ee
Confidence 99999999999999999999999998765 56999999999998 8999999999999974 44
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=360.13 Aligned_cols=204 Identities=20% Similarity=0.271 Sum_probs=173.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 458999999999953 35899999999999999999999999999999999999999999999873 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHcC-CCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRYG-LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|... +...+|+.+++.... ......+.+.++++.++ +.... ++++.+|||||||||+|||||+.+|
T Consensus 82 ~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 82 GIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3899998753 445678888775421 11123456778899994 86544 4578999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999998775 468999999999999999999999999997 467776653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=379.34 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=171.4
Q ss_pred CCceeEEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cc
Q psy10512 83 PKSRDVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KS 159 (629)
Q Consensus 83 ~~~~~i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~ 159 (629)
-.+.+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ..
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR--VTDLPPQKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTCCGGGS
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE--CCcCChhhC
Confidence 356789999999999 88889999999999999999999999999999999999999999998875432 21100 01
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.+ +++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 88 ~ig~-------------v~Q~~~l~-~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~Q 152 (355)
T 1z47_A 88 NVGL-------------VFQNYALF-QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQ 152 (355)
T ss_dssp SEEE-------------ECGGGCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHH
T ss_pred cEEE-------------EecCcccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHH
Confidence 1111 11121222 2223333333222222334455567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999887654 7899999999999999999999999999998766544
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 233 l~ 234 (355)
T 1z47_A 233 VY 234 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=361.63 Aligned_cols=205 Identities=21% Similarity=0.317 Sum_probs=174.3
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeE
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRF 466 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~ 466 (629)
.++|+++||++.|+. ..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 467999999999953 35899999999999999999999999999999999999999999999873 248
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|... +...+|+.+++... .+.....+++.++++.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 91 ~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 91 SYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 89998753 34567888876431 11112235678899999997654 567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||||+|||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 9999999999999999999998765 568999999999999999999999999997 4687777643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=365.58 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=172.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 357999999999953 35899999999999999999999999999999999999999999999863 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC------------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF------------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQK 526 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 526 (629)
.++|++|+.. +....|+.+++.... ......+++.++++.+|+... .++++.+||||||
T Consensus 83 ~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqk 159 (257)
T 1g6h_A 83 GIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGGQM 159 (257)
T ss_dssp TEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHH
T ss_pred CEEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-hCCCchhCCHHHH
Confidence 4889998753 334578888764321 111234568899999999754 4567899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 603 (629)
|||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~ 238 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGE 238 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999999999998776 5699999999999999999999999999974 67766
Q ss_pred H
Q psy10512 604 D 604 (629)
Q Consensus 604 ~ 604 (629)
+
T Consensus 239 ~ 239 (257)
T 1g6h_A 239 E 239 (257)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=368.76 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=165.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.. +......
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~--~~~~~~~------- 81 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN--LNSWQPK------- 81 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE--TTTSCHH-------
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE--CCcCCHH-------
Confidence 6999999999999999999999999999999999999999999999999999999999875432 2111100
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+.....+. .+..++...... ........+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 82 --~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 82 --ALARTRAVMRQYSELAFP-FSVSEVIQMGRA--PYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp --HHHHHEEEECSCCCCCSC-CBHHHHHHGGGT--TSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHH
T ss_pred --HHhheEEEEecCCccCCC-CCHHHHHHhhhh--hcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHH
Confidence 000000000000011112 233333322211 112344567889999999996 57889999999999999999999
Q ss_pred Hcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 247 LYV------KPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 247 L~~------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+. +|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999 99999999999999999999999988765 3599999999999999999999999999998765433
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=377.71 Aligned_cols=203 Identities=23% Similarity=0.281 Sum_probs=176.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+. .+...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 fQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 81 FQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp CTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-TCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9986 356678998887532 22223456788999999998654 567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~ 223 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 9999999999999999888765 679999999999999999999999999997 4688877543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=357.96 Aligned_cols=214 Identities=22% Similarity=0.294 Sum_probs=162.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~~~~~~~~~------ 75 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK--EVDYTNEKE------ 75 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTE--ECCSSCHHH------
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE--ECCCCCHHH------
Confidence 599999999999999999999999999999999999999999999999999999998877532 221110000
Q ss_pred chHHH-HHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEER-VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
....+ ..+..+.+... ..+..+..++..+.............+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 76 ~~~~~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHY-LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEecCcc-cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHH
Confidence 00000 00111111111 112223333333222222233334556789999999996 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|++++.|
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999988654 68999999999998 799999999999998764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=360.56 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=161.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ ..+|+|+||+|++||++||+|||||||||||++|+|+++|++|+|.+.+.. +........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~--~~~~~~~~~- 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK--TNDLDDDEL- 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CTTCCHHHH-
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE--cccCCHHHH-
Confidence 3899999999973 469999999999999999999999999999999999999999998875432 211110000
Q ss_pred hhhhchHH-HHHHHHHHHHHhccCChhHHHHHHHHHhhhh---ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 163 CVMEVDEE-RVRLEKLAEQLVACEDDESQEQLMDIYDRLD---DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
... +..+..+.++...++..+..+++. ...... .....+..+++.++++.+|+.....++++.+||||||
T Consensus 78 -----~~~~~~~i~~v~Q~~~l~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 78 -----TKIRRDKIGFVFQQFNLIPLLTALENVE-LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp -----HHHHHHHEEEECTTCCCCTTSCHHHHHH-HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred -----HHHhhccEEEEecCCccCCCCcHHHHHH-HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 000 000111111111111223333332 221111 2334455678899999999975445899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++.+ .+||+|++|++|+++..+.
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999988654 78999999999965 7999999999999987643
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=372.64 Aligned_cols=205 Identities=24% Similarity=0.287 Sum_probs=176.7
Q ss_pred CCCeEEEEEEEEEE-cCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------ee
Q psy10512 396 PPPVIMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LR 465 (629)
Q Consensus 396 ~~~~l~~~~l~~~y-~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ 465 (629)
+.++|+++||+++| +. . .+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 11 ~~~~l~~~~l~~~y~g~-~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-A-RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTS-T-TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 45689999999999 53 3 3899999999999999999999999999999999999999999999873 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYA-NRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999853 45678998876532 12222356788999999997654 56779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999988765 679999999999999999999999999997 468877654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=355.28 Aligned_cols=199 Identities=26% Similarity=0.371 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. +|+++||+|++ ++++|+||||||||||+|+|+|+++|++|+|.++|. ..++|+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 4789999999952 59999999999 999999999999999999999999999999999873 247888
Q ss_pred ccchhcccCCCCCHHHHHhhcCC--C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP--E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|... +...+|+.+++..... . ....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 76 PQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CSSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred cCCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88753 4456788888754321 1 12246688999999997654 56789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+|||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999998765 568999999999999999999999999997 468877654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=361.30 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=174.1
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEE
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~ 467 (629)
+|+++||+++|+.+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996222 35899999999999999999999999999999999999999999999873 2489
Q ss_pred eeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHcCCC--CcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
|++|++... ....|+.+++.... +.....+++.++++.+|+. +.. ++++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGG-CCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhh-cCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999975322 24578888775431 2222356788999999997 544 567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999998775 568999999999999999999999999997 467776654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=366.98 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=163.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++.......
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~--~~~~~~~~~------ 78 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK--DITNKEPAE------ 78 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE--ECTTCCHHH------
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE--ECCCCCHHH------
Confidence 599999999999999999999999999999999999999999999999999999999887542 221100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh--hc-----------cChhhHHHHHHHHHHhCCCCchhhhcccCCC
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL--DD-----------ISADTAEARAANILHGLGFTKEMQQKKTKDF 233 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~-----------~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 233 (629)
..+..+..+.++...+ +..+..++....... .. ........++.++++.+|+. +..++++.+|
T Consensus 79 --~~~~~i~~v~q~~~l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 154 (257)
T 1g6h_A 79 --LYHYGIVRTFQTPQPL-KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGEL 154 (257)
T ss_dssp --HHHHTEEECCCCCGGG-GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGS
T ss_pred --HHhCCEEEEccCCccC-CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhC
Confidence 0000000000110111 111222222221111 01 12233456788999999996 5789999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999988765 78999999999999999999999999999877
Q ss_pred cCcH
Q psy10512 311 GGNY 314 (629)
Q Consensus 311 ~g~~ 314 (629)
+.+.
T Consensus 235 g~~~ 238 (257)
T 1g6h_A 235 GRGE 238 (257)
T ss_dssp EESH
T ss_pred eCHH
Confidence 5543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=376.72 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=167.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~ 164 (629)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ...+.+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r~ig~- 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL--VNDIPPKYREVGM- 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGGTTEEE-
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEE--CCCCChhhCcEEE-
Confidence 4899999999999999999999999999999999999999999999999999999998875432 21110 001111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
+++....+ +..+..++..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||
T Consensus 80 ------------v~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 80 ------------VFQNYALY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp ------------ECSSCCCC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred ------------EecCcccC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 11111112 2223333333222222222233356789999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654 789999999999999999999999999999877655443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-44 Score=376.27 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=169.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~------ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKD--VTELPPKD------ 74 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGG------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEE--CCcCCHhH------
Confidence 4899999999998899999999999999999999999999999999999999999998875432 21100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+++....+ +..+..++..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 75 -----r~ig~v~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 -----RNVGLVFQNWALY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp -----TTEEEECTTCCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred -----CcEEEEecCcccC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHH
Confidence 0011111111112 2223333333222222334445567899999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999887654 789999999999999999999999999999877665544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=361.78 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=164.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.. ...
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--~~~-~~~------- 84 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVE-EPH------- 84 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTT-CHH-------
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--CCc-cHH-------
Confidence 5999999999999999999999999999999999999999999999999999999998875422 111 000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+... ..+..+..++..+...+.........+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 85 --~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 85 --EVRKLISYLPEEAG-AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp --HHHTTEEEECTTCC-CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHH
T ss_pred --HHhhcEEEEcCCCC-CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 00000001111111 112223333333322222233334456788999999996 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|++++.+.
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 229 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999988654 6899999999999999999999999999987643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=376.31 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=169.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-------CCCCCcc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-------MPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-------~~~~~~~ 159 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.... .+.. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~-~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK-DR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG-GS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh-HC
Confidence 489999999999999999999999999999999999999999999999999999999887543211 1100 01
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.++ ++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 82 ~ig~v-------------~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 82 DIAMV-------------FQSYALY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQ 146 (372)
T ss_dssp SEEEE-------------CSCCCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHH
T ss_pred CEEEE-------------eCCCccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHH
Confidence 11111 1111112 2223333333222222334445567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999998887654 7899999999999999999999999999998776655
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 227 l~ 228 (372)
T 1g29_1 227 VY 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=355.34 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|+++||++.|+.+ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ..++|++|... +.
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CS
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cC
Confidence 79999999999622 358999999999999999999999999999999999999999999853 35899999753 33
Q ss_pred CCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 479 LDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 479 ~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
...|+.+++.... +.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4678888765321 1222346688999999997644 56789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 550 HLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + +.|+++++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998775 5689999999999999999999999999 5 567776653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=370.43 Aligned_cols=203 Identities=22% Similarity=0.257 Sum_probs=175.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 258999
Q ss_pred ccchhcccCCCCCHHHHHhhcCC--C---hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP--E---VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++..... . ....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 81 FQNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-DRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp CSSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99753 4567899988764321 1 11235688999999997654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 223 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD 223 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999988765 579999999999999999999999999997 4688877543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=375.62 Aligned_cols=214 Identities=23% Similarity=0.328 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~ 164 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ...+.++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD--VTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEE--CCCCChhhCcEEEE
Confidence 4999999999999999999999999999999999999999999999999999999998875432 21110 0111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
. +....++.. +..++..+..........+..+++.++|+.+||. ++.++++.+|||||||||+||
T Consensus 89 ~-------------Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 89 F-------------QSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp E-------------C------CC-CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred e-------------cCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 1 111111222 2222222222222233445567899999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654 789999999999999999999999999999877665443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=369.67 Aligned_cols=202 Identities=24% Similarity=0.271 Sum_probs=174.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 258999
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 81 FQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-NRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CTTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-hCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99753 45677898886532 12222346788999999998654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999988765 579999999999999999999999999997 468877654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=375.56 Aligned_cols=216 Identities=22% Similarity=0.306 Sum_probs=168.5
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccC-----CCCCcc
Q psy10512 87 DVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM-----PASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~--~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~-----~~~~~~ 159 (629)
+|+++||+++|++.. +|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+....- ......
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999999887 9999999999999999999999999999999999999999998875432110 000001
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.++ ++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 83 ~ig~v-------------~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~Q 147 (353)
T 1oxx_K 83 KIGMV-------------FQTWALY-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQ 147 (353)
T ss_dssp CEEEE-------------ETTSCCC-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHH
T ss_pred CEEEE-------------eCCCccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHH
Confidence 11111 1111112 2223333333222222334445567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999887654 7899999999999999999999999999998766554
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 228 l~ 229 (353)
T 1oxx_K 228 LY 229 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=369.67 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=173.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 5899999999953 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 81 RDIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp SSEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 24788998753 45678898876532 12222346788999999997654 567799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 9999999999999999999999988765 579999999999999999999999999997 468877754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=357.74 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=162.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +........
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~----- 78 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD--ITNKPAHVI----- 78 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CTTCCHHHH-----
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--CCCCCHHHH-----
Confidence 5999999999999899999999999999999999999999999999999999999998875422 211100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCC-CCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG-FTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.+..+..+.+.. ...+..+..++..+.. ..........+.+.++++.++ +. +..++++.+|||||||||+|||
T Consensus 79 ---~~~~i~~v~q~~-~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 79 ---NRMGIALVPEGR-RIFPELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp ---HHTTEEEECSSC-CCCTTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHH
T ss_pred ---HhCCEEEEecCC-ccCCCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHH
Confidence 000000011111 1112223333332221 111223345567888999994 85 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999988754 6899999999999999999999999999987643
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=369.72 Aligned_cols=202 Identities=26% Similarity=0.342 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCe--EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||+++|+. .. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 5899999999963 34 899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +...+|+.+++..... .....+++.++++.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 81 DRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GSCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHh
Confidence 24788998753 4567899988754321 112346788999999997654 56789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999988765 579999999999999999999999999997 468877654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=369.48 Aligned_cols=202 Identities=21% Similarity=0.250 Sum_probs=172.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999953 35899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++..... .....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 89 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 89 FQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99853 4567899998865321 112245688999999997654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999988765 579999999999999999999999999997 468877654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=365.47 Aligned_cols=217 Identities=22% Similarity=0.279 Sum_probs=163.0
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCC--CCCcchh
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP--ASDKSAL 161 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~--~~~~~~~ 161 (629)
..++|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++. ......
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~--~~~~~~~~~~~- 94 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK--MPGKVGYSAET- 94 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB--CCC---CCHHH-
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE--EcccccCCHHH-
Confidence 345699999999999999999999999999999999999999999999999999999998887532 221 100000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCCh-hHHHHHHHHHh----hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDD-ESQEQLMDIYD----RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 236 (629)
.+..+..+.+........ .+..++..... .+.........+++.++++.+|+. +..++++.+||||
T Consensus 95 --------~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG 165 (279)
T 2ihy_A 95 --------VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTG 165 (279)
T ss_dssp --------HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHH
T ss_pred --------HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHH
Confidence 000011111221111111 12222222110 001111233456788999999996 5789999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRIL--VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tv--IivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|| |+||||++++..+||+|++|++|++++.+
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999988765 6799 99999999999999999999999998764
Q ss_pred C
Q psy10512 312 G 312 (629)
Q Consensus 312 g 312 (629)
.
T Consensus 246 ~ 246 (279)
T 2ihy_A 246 A 246 (279)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=369.92 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=164.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++. +|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +...
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~--i~~~---------- 67 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD--VTDL---------- 67 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE--CTTS----------
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE--CCCC----------
Confidence 38899999999988 9999999999999999999999999999999999999999998875422 2110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..++++...+ +..+..++..+......... . +++.++|+.+|+. ++.++++.+|||||||||+||||
T Consensus 68 -~~~~r~ig~v~Q~~~l~-~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 68 -SPEKHDIAFVYQNYSLF-PHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp -CHHHHTCEEECTTCCCC-TTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHH
T ss_pred -chhhCcEEEEecCcccC-CCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 01111111122221222 22233333332222222222 2 6789999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999887654 78999999999999999999999999999987665443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.28 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=172.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
||+++||+++|+. . +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 4899999999953 4 899999999999999999999999999999999999999999999873 248899
Q ss_pred ccchhcccCCCCCHHHHHhhcC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|+.. +...+|+.+++.... ..... +++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~Q~~~--l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~-~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 78 YQNYS--LFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLL-DRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp CTTCC--CCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred ecCcc--cCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99753 456778888765321 11112 6788999999998654 45779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~ 216 (348)
T 3d31_A 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF 216 (348)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999988765 579999999999999999999999999997 468877654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=350.03 Aligned_cols=202 Identities=26% Similarity=0.348 Sum_probs=167.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+++|+++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999322235899999999999999999999999999999999999999999999873 2488
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|... +. ..|+.+++....+. ...+.+.++++.+++..... ..++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~--l~-~~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDNV--LL-NRSIIDNISLANPG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSCC--CT-TSBHHHHHTTTCTT-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCc--cc-cccHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999753 22 35888887643322 23456777888888753322 23458999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|+||||||||++||+.++..+++.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++.
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999999999999876 579999999999986 49999999999997 468776654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=354.73 Aligned_cols=204 Identities=20% Similarity=0.298 Sum_probs=167.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC--CCCCccEEEECCce----------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD--LTPSVGMVRKNSHL---------- 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~---------- 464 (629)
.++|+++||++.|++ ..+|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 458999999999953 3589999999999999999999999999999999999 47899999998731
Q ss_pred --eEEeeccchhcccCCCCCHHHHHhh---------cCC--C-hhhHHHHHHHHHHcCCCCcccccCcC-cCChhHHHHH
Q psy10512 465 --RFARYHQHLHELLDLDISPLDYMLQ---------SFP--E-VKDREEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRV 529 (629)
Q Consensus 465 --~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv 529 (629)
.++|++|... +....++.+++.. ... . ....+++.++++.+|+.....++++. +|||||||||
T Consensus 96 ~~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 96 GEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hCCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 2788888753 3345666665422 111 1 11235678899999996433455666 5999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|+||||||||+|||+.++..+++.|.++ +.|||+||||++++..+ ||++++|++|+++ +.|++++.
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999999999999999999886 45899999999999886 9999999999997 46776654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=360.23 Aligned_cols=211 Identities=20% Similarity=0.228 Sum_probs=161.7
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFH--G---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~--~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++||+++|+ + +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.. . .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~--~~~--~-~- 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER--KKG--Y-E- 75 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCH--H-H-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE--Cch--H-H-
Confidence 589999999997 5 679999999999999999999999999999999999999999998875321 110 0 0
Q ss_pred hhhhhchHHHHHHHHHHHHH-hccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc-hhhhcccCCCChHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK-EMQQKKTKDFSGGWRM 239 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqrq 239 (629)
.+..+..+.+.. ..+.. .+..++..+..... .......+++.++++.+|+.. +..++++.+|||||||
T Consensus 76 --------~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 76 --------IRRNIGIAFQYPEDQFFA-ERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp --------HGGGEEEECSSGGGGCCC-SSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred --------hhhhEEEEeccchhhcCC-CcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 000000011110 01112 23333332221111 222233567889999999962 5678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988654 68999999999999999999999999999876543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=350.28 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=157.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|++ +|+|+||+|++ +++||+||||||||||||+|+|+++|++|+|.+.+....-.......+.++.+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q- 77 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ- 77 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS-
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC-
Confidence 789999999986 49999999999 99999999999999999999999999999988754321100000011111111
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
... ..+..+..++..+.... .......+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 78 ------------~~~-l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 78 ------------DYA-LFPHLSVYRNIAYGLRN--VERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp ------------SCC-CCTTSCHHHHHHTTCTT--SCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ------------CCc-cCCCCcHHHHHHHHHHH--cCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHH
Confidence 001 11111222222221111 11122256788999999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999988654 68999999999999999999999999999876543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=351.39 Aligned_cols=200 Identities=20% Similarity=0.263 Sum_probs=162.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC--CCCCccEEEECCce------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD--LTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~------------ 464 (629)
+|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 6899999999953 3589999999999999999999999999999999999 88999999998731
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc------C-CC-hhhHHHHHHHHHHcCCCCcccccCcCc-CChhHHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS------F-PE-VKDREEMRKIIGRYGLTGRQQVCPIRQ-LSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~------~-~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqrv~lAral 535 (629)
.++|++|... +....++.+++... . .. ....+.+.++++.+|+.....++++.+ |||||||||+|||||
T Consensus 81 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 81 GLFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp TBCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred cEEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 2567777653 33456777765321 1 11 122456788999999953334567788 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 603 (629)
+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence 9999999999999999999999999999876 45899999999999888 5999999999997 467766
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.29 Aligned_cols=199 Identities=21% Similarity=0.346 Sum_probs=171.1
Q ss_pred eEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEE-
Q psy10512 399 VIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFA- 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~- 467 (629)
+|+++||++.|+.. ...+|+++||+|+ |++++|+||||||||||||+|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 48999999999631 0348999999999 9999999999999999999999999 99999999873 2588
Q ss_pred eeccchhcccCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCC-CcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLT-GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
|++|... + ..|+.+++.... .. ...+++.++++.+|+. .. ..+++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~-~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKG-LDRDLFLEMLKALKLGEEI-LRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTC-CCHHHHHHHHHHTTCCGGG-GGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcc-hHHHHHHHHHHHcCCChhH-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9998753 2 678888764321 11 2356788999999997 54 4567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcC-EEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAE-EIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+|||+.++..+.+.|.++..|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence 99999999999999999999986699999999999999999 99999999997 467776653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=347.97 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=157.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+ .++.++...
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~------ 77 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS------ 77 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC------
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc------
Confidence 599999999998 888999999999999999999999999999999999999999998852 222221110
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-c---cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-D---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
++.. +..++........ . .......+++.++++.+|+. +..++++.+|||||
T Consensus 78 ----------------------~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq 133 (253)
T 2nq2_C 78 ----------------------PFAY-SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQ 133 (253)
T ss_dssp ----------------------SSCC-BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHH
T ss_pred ----------------------CCCC-CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHH
Confidence 0011 1111111111000 0 11223456788999999996 57789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+|||||+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+ ++. |+
T Consensus 134 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~-g~ 211 (253)
T 2nq2_C 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKF-GE 211 (253)
T ss_dssp HHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEE-EE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Eec-CC
Confidence 99999999999999999999999999999999999988764 6899999999999999999999999999 655 44
Q ss_pred HHH
Q psy10512 314 YEA 316 (629)
Q Consensus 314 ~~~ 316 (629)
.++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.340 Sum_probs=169.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 469999999999644 45999999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + +..|+.+++....+. ...+.+.++++.+++.... ...+..+|||||||||+|||||+
T Consensus 131 ~~v~Q~~~--l-f~~Tv~eNi~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 131 GVVPQDTV--L-FNDTIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp EEECSSCC--C-CSEEHHHHHHTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCc--c-CcccHHHHHHhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 99999863 2 245889988754432 2344566666666654322 12345789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|+||||||||++||+.+...|.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 5799999999999976 9999999999997 4788877654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=356.37 Aligned_cols=216 Identities=21% Similarity=0.287 Sum_probs=160.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
.+|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|++ .|++|+|.+.+.. +.....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~--i~~~~~----- 91 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD--LLALSP----- 91 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE--GGGSCH-----
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE--CCcCCH-----
Confidence 3599999999999999999999999999999999999999999999999984 5778888775321 110000
Q ss_pred hhhchHHHHH--HHHHHHHHhccCChhHHHHHHHHHhhh----h--ccChhhHHHHHHHHHHhCCCCchhhhcccC-CCC
Q psy10512 164 VMEVDEERVR--LEKLAEQLVACEDDESQEQLMDIYDRL----D--DISADTAEARAANILHGLGFTKEMQQKKTK-DFS 234 (629)
Q Consensus 164 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l----~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LS 234 (629)
..+.. +..+.+....++..+..+++......+ . .....+..+++.++++.+|+.....++++. +||
T Consensus 92 -----~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 92 -----EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS 166 (267)
T ss_dssp -----HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCC
T ss_pred -----HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCC
Confidence 00000 000000000111112222222211111 1 122233456788999999996456788887 599
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+||||||||++||+.++.++++.|+++ +.|||+||||++++..+ ||++++|++|+++..
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999876 57999999999999886 999999999999987
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 247 g~~ 249 (267)
T 2zu0_C 247 GDF 249 (267)
T ss_dssp ECT
T ss_pred cCH
Confidence 654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=350.77 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=167.8
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.+|+++||++.|+.+ ...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 479999999999641 134899999999999999999999999999999999999999999999873 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhh---------HHHHHHHHHHc--CCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKD---------REEMRKIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
++|++|... +. ..|+.+++......... ...+.++++.+ |+.... .+++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--cc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHHHHHHH
Confidence 889999763 22 35888887643221111 11234567777 675543 45679999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999999876 3589999999999975 9999999999997 4688776643
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=349.06 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=168.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
+|+++||+++|+++. .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSS-CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCC-ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999994233 4899999999999999999999999999999999999999999999763 2478
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|... +. ..|+.+++..........+.+.++++.+++.+.... .++.+|||||||||+|||||+.
T Consensus 80 ~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 80 FVSQDSA--IM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp EECCSSC--CC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCc--cc-cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 8888753 22 348888875431111234567888999998654322 2457999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998775 579999999999986 59999999999996 5788877643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=346.46 Aligned_cols=197 Identities=28% Similarity=0.342 Sum_probs=169.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
+|+++||++. . +|+++||+|++|++++|+||||||||||||+|+|+++|+ |+|.+++.. .++
T Consensus 4 ~l~~~~l~~~-----~-vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES-----T-RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET-----T-TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE-----E-EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 7899999975 2 799999999999999999999999999999999999999 999998742 488
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC-------
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH------- 540 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~------- 540 (629)
|++|+.. +....|+.+++..........+.+.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 77 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp EECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred EECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 9999763 3456788888764321111256788999999997654 46789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 221 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 221 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999776 568999999999999999999999999997 467776653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=354.65 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=156.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR--EVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~--~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++||+++|+++++|+|+||+|++|++++|+||||||||||+++|+|+ +.|++|+|.+.+. ++........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~--~~~~~~~~~~--- 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE--NILELSPDER--- 77 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE--ECTTSCHHHH---
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE--ECCCCCHHHH---
Confidence 48999999999999999999999999999999999999999999999998 7788888877542 2211100000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhc--cChhhHHHHHHHHHHhCCCCchhhhcccCC-CChHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDD--ISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMR 240 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~-LSGGqrqR 240 (629)
.+..+..+.+....+ +..+..++..... .... .......+++.++++.+|+..+..++++.+ ||||||||
T Consensus 78 -----~~~~i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 78 -----ARKGLFLAFQYPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp -----HHTTBCCCCCCCC-C-CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred -----HhCcEEEeccCCccc-cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 000000000000011 1122222222211 1111 122334567889999999954567899999 99999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEEcC
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~~g 312 (629)
|+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+ ||+|++|++|+++..+.
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999998765 57999999999999988 59999999999997654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=339.39 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=161.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.+|+++||+++|+.+...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 37999999999963233489999999999999999999999999999999999999999999988 4899999863 2
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. .|+.+++...... ......++++.+++.... ...++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~-~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 81 MP-GTIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CS-BCHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred cC-CCHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 23 4888887643221 122334455555543211 1224579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 548 TNHLDMETIDALADAI-NDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l-~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 444 568999999999986 59999999999997 468776653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=345.00 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=158.7
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++|++++|++ +++|+|+||+|+ |++++|+||||||||||||+|+|++ |++|++.+.+....... ....+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~-~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCS-CCTTEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchH-HhhheE
Confidence 3889999999987 789999999999 9999999999999999999999999 99999887543211000 011111
Q ss_pred -hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 163 -CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
++.+.. .. ..+..++ ...+..+. ....+++.++++.+|+..+..++++.+|||||||||
T Consensus 78 ~~v~Q~~--------------~l-~~tv~en-l~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 78 TNLPEAY--------------EI-GVTVNDI-VYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp ECCGGGS--------------CT-TSBHHHH-HHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred EEeCCCC--------------cc-CCcHHHH-HHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 111110 01 1122222 22221111 112456889999999962467899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcc-eeEEEcCCeEEEEcC
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCT-NIIHLDKRKLKYYGG 312 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d-~ii~l~~G~i~~~~g 312 (629)
+|||||+.+|+||||||||++||+.++.++++.|+++..|||+||||++++..+|| ++++|++|+++..+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999886699999999999999999 999999999987653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=341.33 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=161.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|+++||++.|+.....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963223489999999999999999999999999999999999999999999998 4899999853 2
Q ss_pred CCCCHHHHHhhcCCChhhHHHHHHHHHH------cCCCCc----ccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 479 LDISPLDYMLQSFPEVKDREEMRKIIGR------YGLTGR----QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gl~~~----~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
...|+.+++....... .+...++++. +++... ...+++.+|||||||||+|||||+.+|+||||||||
T Consensus 78 ~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 QNDSLRENILFGCQLE--EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CSEEHHHHHHTTSCCC--TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCHHHHhhCccccC--HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3568888876432111 1122233333 333211 123567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHh---hc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 549 NHLDMETIDALADAIN---DF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~---~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++||+.++..+.+.|. ++ +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999999984 33 568999999999985 69999999999997 4688776643
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=339.55 Aligned_cols=190 Identities=20% Similarity=0.291 Sum_probs=161.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------eEEeecc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------RFARYHQ 471 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~~~~~~q 471 (629)
.+|+++||+++|+. .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 57999999999953 48999999999999999999999999999999999999999999998842 5899999
Q ss_pred chhcccCCCCCHHHHHhhc---CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 472 HLHELLDLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
... +....|+.+++... .......+++.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 753 34556888776431 1101225678899999999765 5678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 549 NHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++||+.++..+.+.|.++ +.|||+||||++++..+||+++++ .|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999998776 468999999999999999998854 4555
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=344.00 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=152.5
Q ss_pred eeEEEEeEEEEe--CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y--~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
-+|+++||+++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +......
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~--~~~~~~~---- 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD--LALADPN---- 79 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTTSCHH----
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--hhhCCHH----
Confidence 369999999999 46789999999999999999999999999999999999999999988875422 1110000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
..+..+..+.+... ..+. +..++..+.. .. ...+++.++++.+++. +..+ +++.+
T Consensus 80 -----~~~~~i~~v~Q~~~-l~~~-tv~enl~~~~--~~----~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 80 -----WLRRQVGVVLQDNV-LLNR-SIIDNISLAN--PG----MSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp -----HHHHHEEEECSSCC-CTTS-BHHHHHTTTC--TT----CCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTC
T ss_pred -----HHHhcEEEEeCCCc-cccc-cHHHHHhccC--CC----CCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCC
Confidence 00001101111101 1111 2222222110 01 1134566677777774 3333 34689
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|++++.
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ 224 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988765 789999999999986 5999999999999976
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 225 g~~ 227 (247)
T 2ff7_A 225 GKH 227 (247)
T ss_dssp ECH
T ss_pred CCH
Confidence 543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=341.75 Aligned_cols=203 Identities=25% Similarity=0.298 Sum_probs=167.1
Q ss_pred CeEEEEEEEEEEcCCC-CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDDG-PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
++|+++||++.|+... ..+|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999996431 2489999999999999999999999999999999999997 899999873 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral 535 (629)
++|++|.+. +. ..|+.+++...... ...+.+.++++.+++.... ..+++.+|||||||||+|||||
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 95 IGIVPQDTI--LF-NETIKYNILYGKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp EEEECSSCC--CC-SEEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--cc-ccCHHHHHhccCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 889999763 22 35888887643222 2345567778777764321 1245689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 468999999999986 59999999999997 4688777643
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=350.11 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=155.4
Q ss_pred eeEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 86 RDVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 86 ~~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +.....
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--i~~~~~---- 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP--LVQYDH---- 88 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--GGGBCH----
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE--cccCCH----
Confidence 46999999999986 789999999999999999999999999999999999999999988875422 110000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccCh-hh-----HHHHHHHHHHhC--CCCchhhhcccCCCC
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA-DT-----AEARAANILHGL--GFTKEMQQKKTKDFS 234 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~L~~l--gl~~~~~~~~~~~LS 234 (629)
...+..+..+.+... ..+. +..++..+... .... .. ....+.++++.+ |+. ...++++.+||
T Consensus 89 -----~~~~~~i~~v~Q~~~-l~~~-tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LS 158 (271)
T 2ixe_A 89 -----HYLHTQVAAVGQEPL-LFGR-SFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLS 158 (271)
T ss_dssp -----HHHHHHEEEECSSCC-CCSS-BHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSC
T ss_pred -----HHHhccEEEEecCCc-cccc-cHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCC
Confidence 000001111111111 1122 33333222111 1111 11 112345677777 674 45678899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++.. ||+|++|++|+++..
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999775 5799999999999875 999999999999876
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 238 g~~ 240 (271)
T 2ixe_A 238 GTH 240 (271)
T ss_dssp ECH
T ss_pred CCH
Confidence 543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=392.91 Aligned_cols=387 Identities=12% Similarity=0.055 Sum_probs=239.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTML-ELNCGRRYGLLGLNGSGKSTLLAV--LGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
++.+++.+.+++.++|+++|| .|++|++++|+||||||||||+++ ++|+..|..|.+.+.+... ...
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~------~~~---- 82 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET------PQD---- 82 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC------HHH----
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC------HHH----
Confidence 445566666678889999999 999999999999999999999999 7899888888877753210 000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.......+....+.... ...+....... ...+.++++.+++. +..++.+.+||||
T Consensus 83 --~~~~~~~~g~~~q~~~~-------------~~~l~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~LS~g-------- 137 (525)
T 1tf7_A 83 --IIKNARSFGWDLAKLVD-------------EGKLFILDASP-DPEGQEVVGGFDLS-ALIERINYAIQKY-------- 137 (525)
T ss_dssp --HHHHHGGGTCCHHHHHH-------------TTSEEEEECCC-CSSCCSCCSSHHHH-HHHHHHHHHHHHH--------
T ss_pred --HHHHHHHcCCChHHhhc-------------cCcEEEEecCc-ccchhhhhcccCHH-HHHHHHHHHHHHc--------
Confidence 00000000000111000 00000000000 00111233444443 3456666777776
Q ss_pred HHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHHhh---cCCEEEEEecCHHHH---------HhhcceeEEEcCCe-
Q psy10512 245 RALYVKPHLLLLDEPTNH-----LDLDACVWLEEELKT---YKRILVIISHSQDFL---------NGVCTNIIHLDKRK- 306 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~-----LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l---------~~~~d~ii~l~~G~- 306 (629)
+|++|+|||||+. ||+..+..+.++++. .+.|||+|||+++++ ..+||+|++|++|+
T Consensus 138 -----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 138 -----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp -----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred -----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 4889999999984 688988888776654 488999999999984 66799999999843
Q ss_pred ---EEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccc-cC
Q psy10512 307 ---LKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVT-TD 382 (629)
Q Consensus 307 ---i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 382 (629)
....-... ++. ... ...+ ..+.. ..
T Consensus 213 ~G~~~r~l~~~---------------------------------k~r-~~~----------------~~~~-~~~~~i~~ 241 (525)
T 1tf7_A 213 GERRRRTLEIL---------------------------------KLR-GTS----------------HMKG-EYPFTITD 241 (525)
T ss_dssp TTCCEEEEEEE---------------------------------EET-TSC----------------CCCS-EEEEEEET
T ss_pred CCceeEEEEEE---------------------------------ECC-CCC----------------CCCc-eEEEEEcC
Confidence 22110000 000 000 0000 00000 00
Q ss_pred cceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeee-eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE-EEE
Q psy10512 383 KTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL-EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-VRK 460 (629)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~v-sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~-i~~ 460 (629)
.-+. .+|.......+.+.++++++.|+. |+.+ +..|.+|++++|+||||||||||+++|+|...|. |. +
T Consensus 242 ~gi~-v~p~~~~~~~~~~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-- 312 (525)
T 1tf7_A 242 HGIN-IFPLGAMRLTQRSSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-- 312 (525)
T ss_dssp TEEE-ECCTTTCCSCCCCCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--
T ss_pred CCEE-EEeccccccccccccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--
Confidence 0000 112111112345678888766531 3332 4589999999999999999999999999999885 54 2
Q ss_pred CCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 461 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+.+.++.... ....... .+.. . +.+ +..+|+.... ..++.+|||||+||+++|+++..+|+
T Consensus 313 -----i~~~~ee~~~------~l~~~~~-~~g~--~---~~~-~~~~g~~~~~-~~~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 313 -----ILFAYEESRA------QLLRNAY-SWGM--D---FEE-MERQNLLKIV-CAYPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp -----EEEESSSCHH------HHHHHHH-TTSC--C---HHH-HHHTTSEEEC-CCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -----EEEEEeCCHH------HHHHHHH-HcCC--C---HHH-HHhCCCEEEE-EeccccCCHHHHHHHHHHHHHhhCCC
Confidence 1222332111 0111111 1111 1 111 2245554333 34568999999999999999999999
Q ss_pred EEEEeCCCCCCCHH-----HHHHHHHHHh---hcCceEEEEecCH----------HHHHhhcCEEEEEeCCE
Q psy10512 541 LLLLDEPTNHLDME-----TIDALADAIN---DFEGGLVLVSHDF----------RLINQVAEEIWICENGK 594 (629)
Q Consensus 541 lLlLDEPT~~LD~~-----~~~~l~~~l~---~~~~~vi~vsHd~----------~~~~~~~d~i~~l~~G~ 594 (629)
+||+| ||++||.. .+..+.++++ +.+.|||+||||. ..+..+||+|++|++|+
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999 99999998 8887776664 4467999999999 88889999999998875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=340.03 Aligned_cols=203 Identities=22% Similarity=0.228 Sum_probs=155.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|+ |+|.+.+.. +.....
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~--~~~~~~-------- 68 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP--LEAWSA-------- 68 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE--GGGSCH--------
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE--CCcCCH--------
Confidence 5999999987 6999999999999999999999999999999999999999 988775322 110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..+.++.. ..+..+..++..+.. .... . .+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 69 -~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~-~~~~--~--~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAra 140 (249)
T 2qi9_C 69 -TKLALHRAYLSQQQT-PPFATPVWHYLTLHQ-HDKT--R--TELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAV 140 (249)
T ss_dssp -HHHHHHEEEECSCCC-CCTTCBHHHHHHTTC-SSTT--C--HHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHH
T ss_pred -HHHhceEEEECCCCc-cCCCCcHHHHHHHhh-ccCC--c--HHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 000001101111111 111123333322211 1111 1 56788999999996 57889999999999999999999
Q ss_pred HccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPH-------LLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~-------iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+ ||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++++.+.
T Consensus 141 L~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 141 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999 99999999999999999999988765 6899999999999999999999999999987643
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.75 Aligned_cols=209 Identities=20% Similarity=0.272 Sum_probs=151.5
Q ss_pred eeEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..|+++||+|+|+ +.++|+||||+|++|+++||+||||||||||+++|+|++.|++|+|.+.+.. +......
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~--i~~~~~~----- 124 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD--ISQVTQA----- 124 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE--TTSBCHH-----
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE--cccCCHH-----
Confidence 4699999999995 5789999999999999999999999999999999999999999998875432 2111000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc----------hhhhcccCCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK----------EMQQKKTKDFS 234 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 234 (629)
..+..+..+.++. ..++. +..++..+.. .... ...+.++++.+++.. ....+.+.+||
T Consensus 125 ----~~r~~i~~v~Q~~-~lf~~-Tv~eNi~~~~--~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 125 ----SLRSHIGVVPQDT-VLFND-TIADNIRYGR--VTAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp ----HHHHTEEEECSSC-CCCSE-EHHHHHHTTS--TTCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ----HHhcceEEEecCC-ccCcc-cHHHHHHhhc--ccCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 0011111111111 11122 2222222111 0111 123444444444431 12345567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+.. ||+|++|++|+|++.|.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~ 271 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGR 271 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988765 6899999999999986 99999999999998765
Q ss_pred cH
Q psy10512 313 NY 314 (629)
Q Consensus 313 ~~ 314 (629)
+.
T Consensus 272 ~~ 273 (306)
T 3nh6_A 272 HE 273 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=333.62 Aligned_cols=199 Identities=21% Similarity=0.289 Sum_probs=151.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|+++||+++|++ ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.... .....+.++.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEEC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEe
Confidence 36999999999998 9999999999999999999999999999999999999999999887543211 0000011110
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
++... .+..+..++..+...+... ... .+++.++++.+|+.. . ++++.+|||||||||+|||
T Consensus 85 -------------q~~~~-~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 85 -------------EEIIV-PRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLAS 146 (214)
T ss_dssp -------------SSCCC-CTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHH
T ss_pred -------------CCCcC-CCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHH
Confidence 01011 1111222222222111111 122 467889999999974 5 8899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+++++ .|+|
T Consensus 147 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999999999988765 589999999999999999998855 4454
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=337.99 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=152.5
Q ss_pred EEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCCC-cchhhhh
Q psy10512 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPASD-KSALTCV 164 (629)
Q Consensus 88 i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~~-~~~~~~~ 164 (629)
|+++||+++| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.... ..... ...+.++
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 8899999999 6678999999999999999999999999999999999999999999988643211 11000 0111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKDF 233 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~L 233 (629)
.+ .. ...+. +..++..+. +. ......++.++++.+++.. ..+ +++.+|
T Consensus 82 ~q-------------~~-~l~~~-tv~enl~~~--~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 82 SQ-------------DS-AIMAG-TIRENLTYG--LE---GDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp CC-------------SS-CCCCE-EHHHHTTSC--TT---SCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCC
T ss_pred cC-------------CC-ccccc-cHHHHHhhh--cc---CCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcC
Confidence 11 00 01122 222221111 00 0111345677788888753 333 456899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~- 218 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGS- 218 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCC-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999888765 789999999999986 5999999999999865
Q ss_pred CcHHH
Q psy10512 312 GNYEA 316 (629)
Q Consensus 312 g~~~~ 316 (629)
|+.+.
T Consensus 219 g~~~~ 223 (243)
T 1mv5_A 219 GKHNE 223 (243)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 44443
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=351.34 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=170.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+++|+.+...+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 4699999999995333458999999999999999999999999999999999998 8999999873 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCc-----------CChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ-----------LSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral 535 (629)
+|++|+.. + +..|+.+++.... ....+++.++++.+++.+... +++.+ |||||||||+|||||
T Consensus 97 g~v~Q~~~--l-f~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 97 GVIPQKVF--I-FSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp EEESCCCC--C-CSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EEEcCCcc--c-CccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999863 2 2358888875221 234567889999999976544 45566 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++.+ ..||||++|++|+|+ ..|+++++..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 46899999998766 569999999999997 4688877644
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=320.63 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=141.2
Q ss_pred eeEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcc
Q psy10512 86 RDVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKS 159 (629)
Q Consensus 86 ~~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~ 159 (629)
.+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ ..++.....
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-- 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-- 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS--
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC--
Confidence 3699999999995 57899999999999999999999999999999999999999999987642 222211100
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcc
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKK 229 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~ 229 (629)
. +..++..+... .. ..+..++++.+++... ..+++
T Consensus 83 ---------------------------~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 83 ---------------------------G-TIKENIIFGVS---YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp ---------------------------B-CHHHHHHTTSC---CC----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred ---------------------------C-CHHHHhhccCC---cC----hHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 0 11111110000 00 0011122222332110 12345
Q ss_pred cCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 230 TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTY--KRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 230 ~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L-~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.+ .++ +.|||+||||++++. .||++++|++|+
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999864 443 679999999999986 599999999999
Q ss_pred EEEEcCc
Q psy10512 307 LKYYGGN 313 (629)
Q Consensus 307 i~~~~g~ 313 (629)
++..+.+
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9876543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=336.18 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=149.5
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+|+++||+++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++| .|+|.+.+.. +......
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~--i~~~~~~---- 89 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN--VNKYNRN---- 89 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE--GGGBCHH----
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE--hhhcCHH----
Confidence 5999999999986 4699999999999999999999999999999999999876 6877764321 1100000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchh----------hhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM----------QQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 233 (629)
..+..+..+.+... ..+. +..++..+. . ... ..+++.++++.+++.... .++++.+|
T Consensus 90 -----~~~~~i~~v~Q~~~-l~~~-tv~enl~~~-~---~~~--~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 90 -----SIRSIIGIVPQDTI-LFNE-TIKYNILYG-K---LDA--TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp -----HHHTTEEEECSSCC-CCSE-EHHHHHHTT-C---TTC--CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred -----HHhccEEEEcCCCc-cccc-CHHHHHhcc-C---CCC--CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 00000000111111 1122 333332211 1 111 123456677777764211 13567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|+++..+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKG 235 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 579999999999986 59999999999998765
Q ss_pred Cc
Q psy10512 312 GN 313 (629)
Q Consensus 312 g~ 313 (629)
.+
T Consensus 236 ~~ 237 (260)
T 2ghi_A 236 TH 237 (260)
T ss_dssp CH
T ss_pred CH
Confidence 43
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.69 Aligned_cols=192 Identities=21% Similarity=0.308 Sum_probs=142.7
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcch
Q psy10512 87 DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKSA 160 (629)
Q Consensus 87 ~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~~ 160 (629)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +.++....
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~---- 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ---- 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCC----
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCC----
Confidence 489999999997 57899999999999999999999999999999999999999999987643 22221100
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHH---HHHhCCCCc----hhhhcccCCC
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN---ILHGLGFTK----EMQQKKTKDF 233 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~L~~lgl~~----~~~~~~~~~L 233 (629)
.. +..++..+... .... ....+.+ +++.+++.+ ...++++.+|
T Consensus 79 -------------------------~~-tv~enl~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 79 -------------------------ND-SLRENILFGCQ---LEEP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp -------------------------SE-EHHHHHHTTSC---CCTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred -------------------------Cc-CHHHHhhCccc---cCHH-HHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 00 11111111100 0111 1111111 122222211 1246778999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK---TY--KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~---~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|. ++ +.|||+||||++++. .||++++|++|+++
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS 207 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999883 22 689999999999985 79999999999998
Q ss_pred EEcCc
Q psy10512 309 YYGGN 313 (629)
Q Consensus 309 ~~~g~ 313 (629)
..+.+
T Consensus 208 ~~g~~ 212 (237)
T 2cbz_A 208 EMGSY 212 (237)
T ss_dssp EEECH
T ss_pred EeCCH
Confidence 76543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=331.55 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=148.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
++|+++||++.+ . .+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|... +
T Consensus 39 ~~l~~~~l~~~~---~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l 110 (290)
T 2bbs_A 39 DSLSFSNFSLLG---T-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--I 110 (290)
T ss_dssp -----------C---C-CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEcC---c-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--c
Confidence 469999999864 2 389999999999999999999999999999999999999999999988 4899999753 2
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. .|+.+++. .... ....+..+++.+++.... ...++.+|||||||||+|||||+.+|++||||||
T Consensus 111 ~~-~tv~enl~-~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 111 MP-GTIKENII-GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp CS-SBHHHHHH-TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred Cc-ccHHHHhh-Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 22 48888886 3321 122344455555653221 1123579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 548 TNHLDMETIDALADAI-NDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l-~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+|||+.++..+++.+ .++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 246 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence 9999999999999974 343 569999999999985 59999999999997 468877764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=348.55 Aligned_cols=209 Identities=21% Similarity=0.347 Sum_probs=159.1
Q ss_pred eeEEEEeEEEEe--CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y--~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++||+|+| ++..+|+||||+|++||+++|+||||||||||||+|+|++. ++|+|.+.+. ++......
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~--~i~~~~~~---- 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV--SWDSITLE---- 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC--BTTSSCHH----
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE--ECCcCChH----
Confidence 469999999999 66789999999999999999999999999999999999987 7788776532 22111100
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC-----------
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD----------- 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----------- 232 (629)
..+..+..+++... .++. +..++...+ .....+++.++++.+++. ++.++++.+
T Consensus 91 -----~~rr~ig~v~Q~~~-lf~~-tv~enl~~~-------~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~ 155 (390)
T 3gd7_A 91 -----QWRKAFGVIPQKVF-IFSG-TFRKNLDPN-------AAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCV 155 (390)
T ss_dssp -----HHHHTEEEESCCCC-CCSE-EHHHHHCTT-------CCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTT
T ss_pred -----HHhCCEEEEcCCcc-cCcc-CHHHHhhhc-------cccCHHHHHHHHHHhCCH-HHHhhccccccccccccccc
Confidence 00111111111111 1122 222222111 112245678899999996 678888888
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++.+. .||||++|++|+|+..
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY 234 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 579999999997664 6999999999999988
Q ss_pred cCcHHHH
Q psy10512 311 GGNYEAF 317 (629)
Q Consensus 311 ~g~~~~~ 317 (629)
+.+.+.|
T Consensus 235 g~~~el~ 241 (390)
T 3gd7_A 235 DSILELY 241 (390)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 7765554
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=356.45 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=171.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999643234899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral 535 (629)
+|++|++. + +..|+.+++.... +. ...+++.++++.+++.+.... .+..+|||||||||+|||||
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 420 ALVSQNVH--L-FNDTIANNIAYAAEGE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EEEcCCCc--c-ccccHHHHHhccCCCC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 99999864 2 2358888886543 22 345677888888887543221 23478999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|++++..+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999876 568999999999986 699999999999974 788877643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=357.22 Aligned_cols=204 Identities=26% Similarity=0.360 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 459999999999754445899999999999999999999999999999999999999999999883 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + ++.|+.+++..+.+. ...+++.++++..++.+... ..+..+|||||||||+|||||+
T Consensus 418 ~~v~Q~~~--l-~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 418 GLVQQDNI--L-FSDTVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp EEECSSCC--C-CSSBHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-CcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 99999853 2 344899988765443 33456677777776543221 1234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999775 4699999999999865 9999999999997 4788877654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=356.02 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=171.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643234899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral 535 (629)
+|++|++. + +..|+.+++.... +. ...+++.++++.+++.+... ..+..+|||||||||+|||||
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 420 ALVSQNVH--L-FNDTVANNIAYARTEE-YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEECSSCC--C-CSSBHHHHHHTTTTSC-CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEccCCc--C-CCCCHHHHHhccCCCC-CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999864 2 2358999886543 22 34567788888887753322 124579999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|+++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 9999999999999999999999999999876 579999999999986 699999999999974 688877644
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=354.32 Aligned_cols=204 Identities=22% Similarity=0.293 Sum_probs=168.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 469999999999654445899999999999999999999999999999999999999999999873 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc----------ccccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR----------QQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + +..|+.+++....+. ...+++.+.++..++.+. ....+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-f~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 420 SAVPQETV--L-FSGTIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEECSSCC--C-CSEEHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred EEECCCCc--C-cCccHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999863 2 245888888654432 233445555555444211 122456799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+|++ .|+++++.+
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999875 569999999999985 799999999999974 799887754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=357.46 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=169.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
.-|+++||+|+|+++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 353 ~~i~~~~v~~~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 3599999999996544 4899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc----------CcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC----------PIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + ++.|+.+++..+.+. ...+++.++++.+++.+..... ...+|||||||||+|||||+
T Consensus 432 ~~v~Q~~~--l-f~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQDTI--L-FSTTVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTTCC--C-CSSBHHHHHHSSSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-ccccHHHHHhcCCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999863 2 345899988754432 2334566777766664332221 23689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998876 6799999999999965 9999999999997 4799887654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=346.26 Aligned_cols=211 Identities=19% Similarity=0.270 Sum_probs=155.5
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~--~~~~~----- 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV--RDYKL----- 412 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh--hhCCH-----
Confidence 46999999999974 6799999999999999999999999999999999999999999998865321 10000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
...+..+..+.++... .+. +..++..... . ....++++.++++.+|+. +..+ +.+.+
T Consensus 413 ----~~~~~~i~~v~Q~~~l-~~~-tv~eni~~~~----~-~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 413 ----TNLRRHFALVSQNVHL-FND-TIANNIAYAA----E-GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred ----HHHhcCeEEEcCCCcc-ccc-cHHHHHhccC----C-CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCc
Confidence 0001111111111111 111 2222222111 0 011234567777777774 2333 34589
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIER 559 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988775 689999999999987 6999999999999976
Q ss_pred cCcHHHH
Q psy10512 311 GGNYEAF 317 (629)
Q Consensus 311 ~g~~~~~ 317 (629)
| +.+++
T Consensus 560 g-~~~~l 565 (582)
T 3b5x_A 560 G-RHADL 565 (582)
T ss_pred C-CHHHH
Confidence 5 44433
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=312.81 Aligned_cols=186 Identities=22% Similarity=0.333 Sum_probs=127.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~~~~ 162 (629)
.|+++||++.+ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +.++....
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~------ 111 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM------ 111 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCC------
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccC------
Confidence 59999999863 6799999999999999999999999999999999999999999886532 22221110
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcccCC
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKKTKD 232 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 232 (629)
+.+..+++. . . ... ...+.++++.+++... ..++++.+
T Consensus 112 -----------------------~~tv~enl~--~--~-~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (290)
T 2bbs_A 112 -----------------------PGTIKENII--G--V-SYD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159 (290)
T ss_dssp -----------------------SSBHHHHHH--T--T-CCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CC
T ss_pred -----------------------cccHHHHhh--C--c-ccc----hHHHHHHHHHhChHHHHHhccccccchhcCccCc
Confidence 011111111 0 0 000 0111223333333211 12334689
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L-~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+++.+ .++ +.|||+||||++++. .||+|++|++|+++.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999864 333 689999999999986 599999999999987
Q ss_pred EcCc
Q psy10512 310 YGGN 313 (629)
Q Consensus 310 ~~g~ 313 (629)
.+.+
T Consensus 239 ~g~~ 242 (290)
T 2bbs_A 239 YGTF 242 (290)
T ss_dssp EECH
T ss_pred eCCH
Confidence 6543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=343.99 Aligned_cols=211 Identities=20% Similarity=0.298 Sum_probs=151.0
Q ss_pred eeEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.+++.+ +...+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~--i~~~~------ 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD--VRTVK------ 411 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB--GGGBC------
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE--cccCC------
Confidence 4699999999995 4679999999999999999999999999999999999999999999875432 11100
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc----------hhhhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK----------EMQQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~L 233 (629)
....+..+..+.|+. ...+. +..++..... .... .+.+.+.++..++.+ ...++.+.+|
T Consensus 412 ---~~~~r~~i~~v~Q~~-~lf~~-tv~eni~~~~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 412 ---LKDLRGHISAVPQET-VLFSG-TIKENLKWGR--EDAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp ---HHHHHHHEEEECSSC-CCCSE-EHHHHHTTTC--SSCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred ---HHHHHhheEEECCCC-cCcCc-cHHHHHhccC--CCCC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 001111111111110 11122 2222221110 0111 122333344433321 2335667899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.|
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 689999999999986 79999999999999875
Q ss_pred CcHHHH
Q psy10512 312 GNYEAF 317 (629)
Q Consensus 312 g~~~~~ 317 (629)
. ++++
T Consensus 560 ~-~~el 564 (587)
T 3qf4_A 560 T-HKEL 564 (587)
T ss_dssp C-HHHH
T ss_pred C-HHHH
Confidence 4 4443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.23 Aligned_cols=208 Identities=21% Similarity=0.281 Sum_probs=154.6
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.+ +...+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~--~~~~~~----- 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD--LREYTL----- 412 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE--TTTBCH-----
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE--ccccCH-----
Confidence 46999999999974 679999999999999999999999999999999999999999998875432 111000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
...+..+..+.++.. ..+. +..++..... .. ...++++.++++.+|+. +..+ +.+.+
T Consensus 413 ----~~~~~~i~~v~Q~~~-l~~~-tv~eni~~~~-~~----~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 413 ----ASLRNQVALVSQNVH-LFND-TVANNIAYAR-TE----EYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp ----HHHHHTEEEECSSCC-CCSS-BHHHHHHTTT-TS----CCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCS
T ss_pred ----HHHHhhCeEEccCCc-CCCC-CHHHHHhccC-CC----CCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCC
Confidence 000111101111111 1122 3333322211 01 11235577788888875 3333 34589
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 789999999999886 6999999999999977
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
|.+
T Consensus 560 g~~ 562 (582)
T 3b60_A 560 GTH 562 (582)
T ss_dssp ECH
T ss_pred cCH
Confidence 543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=344.83 Aligned_cols=208 Identities=19% Similarity=0.281 Sum_probs=150.3
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~--~~~~~----- 410 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI--KDFLT----- 410 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG--GGSCH-----
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh--hhCCH-----
Confidence 46999999999974 5799999999999999999999999999999999999999999988754321 11000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 233 (629)
...+..+..+.++ ....+. +..++.... . ....++.+.++++.+++.+. ...+...+|
T Consensus 411 ----~~~r~~i~~v~Q~-~~l~~~-tv~eni~~~----~--~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 411 ----GSLRNQIGLVQQD-NILFSD-TVKENILLG----R--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ----HHHHHTEEEECSS-CCCCSS-BHHHHHGGG----C--SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ----HHHhhheEEEeCC-CccCcc-cHHHHHhcC----C--CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 0001111001111 011122 222222111 0 01112345556666665321 122345689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|++++.|
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETG 557 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 5799999999999864 9999999999999875
Q ss_pred Cc
Q psy10512 312 GN 313 (629)
Q Consensus 312 g~ 313 (629)
.+
T Consensus 558 ~~ 559 (578)
T 4a82_A 558 TH 559 (578)
T ss_dssp CH
T ss_pred CH
Confidence 44
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=345.91 Aligned_cols=210 Identities=17% Similarity=0.244 Sum_probs=152.4
Q ss_pred eeEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..|+++|++|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i--~~~~~------ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI--RKIKR------ 424 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG--GGSCH------
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh--hhCCH------
Confidence 35999999999974 6799999999999999999999999999999999999999999988754321 11000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcc-----------cCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKK-----------TKDF 233 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~-----------~~~L 233 (629)
...+..+..+.++. ...+. +..++..... ... .++.+.++++.+++. +..++. ..+|
T Consensus 425 ---~~~r~~i~~v~Q~~-~lf~~-tv~eni~~~~--~~~----~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 425 ---SSLRSSIGIVLQDT-ILFST-TVKENLKYGN--PGA----TDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp ---HHHHHHEEEECTTC-CCCSS-BHHHHHHSSS--TTC----CTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTS
T ss_pred ---HHHHhceEEEeCCC-ccccc-cHHHHHhcCC--CCC----CHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCC
Confidence 01111111111111 11122 2222222110 011 123355566666663 223332 3789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+.. ||+|++|++|++++.|
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMG 571 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 7899999999999875 9999999999999765
Q ss_pred CcHHHH
Q psy10512 312 GNYEAF 317 (629)
Q Consensus 312 g~~~~~ 317 (629)
+++++
T Consensus 572 -~~~~l 576 (598)
T 3qf4_B 572 -KHDEL 576 (598)
T ss_dssp -CHHHH
T ss_pred -CHHHH
Confidence 44443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=328.49 Aligned_cols=196 Identities=19% Similarity=0.315 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
..++++|+++.|++. .|+++||+|.+||++||+||||||||||+++|+|+++|+.|+|.+ .++.|+.....
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~---- 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY---- 360 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCC----
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCC----
Confidence 469999999999875 689999999999999999999999999999999999999998853 23333221100
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+. .++...... .... ..+++.++++.+|+. +..++++.+|||||||||
T Consensus 361 ------------------------~~tv-~~~~~~~~~-~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 361 ------------------------EGTV-YELLSKIDA-SKLN---SNFYKTELLKPLGII-DLYDREVNELSGGELQRV 410 (538)
T ss_dssp ------------------------SSBH-HHHHHHHHH-HHHT---CHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHH
T ss_pred ------------------------CCcH-HHHHHhhhc-cCCC---HHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHH
Confidence 0001 111100000 0000 124577899999996 678999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNYE 315 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~~ 315 (629)
+|||||+.+|+||||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |++...+.+.+
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999999999999999999999999988653 78999999999999999999999986 67776766644
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 491 ~ 491 (538)
T 1yqt_A 491 M 491 (538)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=338.93 Aligned_cols=200 Identities=27% Similarity=0.412 Sum_probs=163.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc-CCCCCccEEEECCceeEEeeccchhccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG-DLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.|...|+++.|++ ..+|+++||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|... .+
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~ 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GT 507 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CC
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-cc
Confidence 4666799999953 358999999999999999999999999999999994 22 110 0011234677776532 23
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
....++.+++...... . .+++.++|+.+||.....++++.+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 508 ~~~ltv~e~l~~~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585 (986)
T ss_dssp CTTSBHHHHHHTTCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred ccCCcHHHHHHHhhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 4567888877542212 1 5678899999999644456788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.|.+.|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.+
T Consensus 586 ~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 586 WLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999998777999999999999999999999999999767899888754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=331.27 Aligned_cols=196 Identities=19% Similarity=0.316 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
..++++|+++.|++. .|+++||+|.+||++||+||||||||||||+|+|++.|++|+|.+ .++.|+.....
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~---- 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY---- 430 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCC----
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCC----
Confidence 469999999999874 689999999999999999999999999999999999999998853 23333221100
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+. .++...... ... ....++.++|+.+|+. +..++++.+|||||||||
T Consensus 431 ------------------------~~tv-~e~~~~~~~-~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 431 ------------------------EGTV-YELLSKIDS-SKL---NSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRV 480 (607)
T ss_dssp ------------------------SSBH-HHHHHHHHH-HHH---HCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHH
T ss_pred ------------------------CCcH-HHHHHhhhc-cCC---CHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHH
Confidence 0001 111100000 000 0124577889999996 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNYE 315 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~~ 315 (629)
+|||||+.+|+||||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |.+...+.+.+
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999999999999999999999999999999988754 78999999999999999999999986 77776666644
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 561 ~ 561 (607)
T 3bk7_A 561 M 561 (607)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=324.83 Aligned_cols=195 Identities=20% Similarity=0.241 Sum_probs=150.9
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe-----ecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH-----LTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~-----~~~~~~~~~~~~ 160 (629)
..++++|+++.|++. .|.++||+|++||++||+||||||||||+++|+|+++|++|+|.+.. ..+.....
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~---- 342 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN---- 342 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCC----
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccc----
Confidence 358999999999884 57888999999999999999999999999999999999999986421 11111000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+++...... ... .....+.++++.+|+. +..++++.+||||||||
T Consensus 343 ------------------------~~~tv~~~l~~~~~~--~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QR 393 (538)
T 3ozx_A 343 ------------------------YDGTVQQYLENASKD--ALS--TSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQK 393 (538)
T ss_dssp ------------------------CSSBHHHHHHHHCSS--TTC--TTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHH
T ss_pred ------------------------cCCCHHHHHHHhhhh--ccc--hhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHH
Confidence 000111111111000 000 1124567889999996 67899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNY 314 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~ 314 (629)
|+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |.+...+.+.
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999999999888654 78999999999999999999999986 4454444443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=354.19 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=167.2
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.-|+++||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999643 234899999999999999999999999999999999999999999999884 25
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral 535 (629)
++|++|++. + +..|+.+++..+.+. ...+++.+.++..++.+.. ......+|||||||||+|||||
T Consensus 466 i~~v~Q~~~--l-~~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 466 IGVVSQEPV--L-FATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp EEEECSSCC--C-CSSCHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--c-CCccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 899999863 2 345899988755433 2344555555554432111 1124468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+++...+.+.+... +.|+|+|||+++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999988764 5799999999999976 9999999999997 4788877644
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=351.98 Aligned_cols=202 Identities=26% Similarity=0.320 Sum_probs=171.4
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
-|+++||+|+|+.. ..++|+|+||+|++|+.++||||+|||||||+++|.|+++|++|+|.++|. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 59999999999642 335899999999999999999999999999999999999999999999983 369
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. -++.|+.+++..+.+. ..++++.++++..++.+.... .....||||||||++||||++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred cccCCcce---eeCCchhHHHhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 99999863 3566899998766544 356678888877765432211 123579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|+|||||||||+||+++...+.+.|.++ +.|+|+|||++..+. .||+|++|++|+|++ .|+++++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL~ 640 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRALM 640 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHHH
Confidence 999999999999999999999999999876 679999999999985 599999999999985 78887753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=319.58 Aligned_cols=194 Identities=16% Similarity=0.269 Sum_probs=149.8
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCCce----EEEeecccCCCCCcch
Q psy10512 91 ANFSITFHG-CELLQDTMLELNCG-----RRYGLLGLNGSGKSTLLAVLGNREVPVPDHI----DIFHLTREMPASDKSA 160 (629)
Q Consensus 91 ~nls~~y~~-~~~L~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~L~g~~~p~~g~i----~i~~~~~~~~~~~~~~ 160 (629)
.+++++|++ ..+++++||++.+| |++||+|||||||||||++|+|+++|++|.. .+.+..+......
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~--- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF--- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCC---
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccC---
Confidence 567889976 45899999999999 8899999999999999999999999998862 1222222211100
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
..+..+.+. ..+.. .......+.++++.+|+. +..++++.+||||||||
T Consensus 427 -------------------------~~tv~e~~~---~~~~~--~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQR 475 (608)
T 3j16_B 427 -------------------------PGTVRQLFF---KKIRG--QFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQR 475 (608)
T ss_dssp -------------------------CSBHHHHHH---HHCSS--TTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHH
T ss_pred -------------------------CccHHHHHH---HHhhc--ccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHH
Confidence 000011100 00000 001124567789999997 57899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNY 314 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~ 314 (629)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++ |++...+.+.
T Consensus 476 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999999999999988887654 78999999999999999999999996 8888877776
Q ss_pred HHHH
Q psy10512 315 EAFC 318 (629)
Q Consensus 315 ~~~~ 318 (629)
+.+.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 6543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=315.39 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=130.3
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHH---------------------HHHHcCCCCCccEEE-------ECCc---
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLL---------------------NLIYGDLTPSVGMVR-------KNSH--- 463 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~~~--- 463 (629)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|. +.+.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 379999999999999999999999999998 999999999966553 3321
Q ss_pred ----eeEEeeccchhc-----------------ccCCCCCHHHHHhhc--CC--Ch---hhH------HHHHHHHHHcCC
Q psy10512 464 ----LRFARYHQHLHE-----------------LLDLDISPLDYMLQS--FP--EV---KDR------EEMRKIIGRYGL 509 (629)
Q Consensus 464 ----~~~~~~~q~~~~-----------------~~~~~~~~~~~~~~~--~~--~~---~~~------~~~~~~l~~~gl 509 (629)
..+++++|.... .....+++.+++... .. .. ... .....+++.+||
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 112333332110 001123333333210 00 00 000 111235888999
Q ss_pred CCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhc
Q psy10512 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVA 584 (629)
Q Consensus 510 ~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~ 584 (629)
.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|++.|+++ +.|||+||||++++. .|
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~ 270 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AA 270 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HC
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hC
Confidence 7654567889999999999999999999998 99999999999999999999998765 579999999999875 59
Q ss_pred CEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 585 EEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 585 d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|+|++| ++|+++ +.|+++++..
T Consensus 271 d~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 271 DYLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp SEEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CEEEEecccccccCCEEE-EecCHHHHhc
Confidence 999999 899997 5788877643
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=291.79 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK---PHLLLLDEPTNHLDLDACVWLEEELKT---YKRIL 282 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tv 282 (629)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|++.|.+ .+.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 346789999999974346889999999999999999999996 799999999999999999999888764 47899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCc
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGN 313 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~ 313 (629)
|+||||++++ .+||+|++| ++|+|++.+.+
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999 789999999 79999876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=289.03 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHLDLDACVWLEEELKTY---KRIL 282 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tv 282 (629)
..++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|.++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3567789999999654567899999999999999999999875 799999999999999999999987654 7899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCcHH
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYE 315 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~ 315 (629)
|+||||++++.. ||+|++| ++|+|++.|.+.+
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999999999865 9999999 8999998876544
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-32 Score=298.78 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=155.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-E-EEECCc--eeEEeeccc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-M-VRKNSH--LRFARYHQH 472 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~~--~~~~~~~q~ 472 (629)
.++++++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+++|++| + |.+++. ..+++++|.
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788999988773 68999999999999999999999999999999999999 8 988763 357788887
Q ss_pred hhcc-cCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH--HccCCCE----EE
Q psy10512 473 LHEL-LDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL--AWQAPHL----LL 543 (629)
Q Consensus 473 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----Ll 543 (629)
.... .....++.+++.... ......+.+..+++.+|+.... . +.+|||||||||+|||+ |+.+|++ ||
T Consensus 188 ~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~-~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 188 ISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERIN-E--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp CEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGG-G--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred hhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCccc-c--hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 5321 112234443331100 0101123345678888987643 2 57999999999999999 9999999 99
Q ss_pred EeC-CCCCCCHHHHHHHHHHHhhcCceEEEEecCHH------HHHhhcCE-----EEEEe-CCEEEEecCCHHHHH
Q psy10512 544 LDE-PTNHLDMETIDALADAINDFEGGLVLVSHDFR------LINQVAEE-----IWICE-NGKVTKWEGNILDYK 606 (629)
Q Consensus 544 LDE-PT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 606 (629)
||| ||++||+. ...|.+++++++.++|+||||.+ ++..+||+ |++|+ +|+++ .|+.++..
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred EeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 999 99999999 88888888888889999999987 88899999 99999 99996 68876653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=279.92 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q psy10512 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHLDLDACVWLEEELKTY---KRILV 283 (629)
Q Consensus 210 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvI 283 (629)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999743578899999999999999999999865 999999999999999999999887654 78999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYE 315 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~ 315 (629)
+||||++++ .+||+|++| ++|++++.+.+.+
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 999999998 579999999 7899997755433
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=262.80 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEE----cC
Q psy10512 233 FSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHL----DK 304 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l----~~ 304 (629)
|||||||||+||++|+.+| +||||||||||||+.++.+|.+.|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999887 58999999999887 579999999 99
Q ss_pred CeEEEE
Q psy10512 305 RKLKYY 310 (629)
Q Consensus 305 G~i~~~ 310 (629)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-28 Score=260.97 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEE----eC
Q psy10512 521 LSDGQKCRVVFAYLAWQAP--HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWIC----EN 592 (629)
Q Consensus 521 LSgGqkqrv~lAral~~~p--~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l----~~ 592 (629)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.+||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 5999999999999999999 999999999999999999999999988 47999999999887 579999999 99
Q ss_pred CEEEE
Q psy10512 593 GKVTK 597 (629)
Q Consensus 593 G~i~~ 597 (629)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98864
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-30 Score=285.06 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=141.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-c-eEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-H-IDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~-i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+..|+.| . +.+.+... ..+..+
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~-------~~i~~v 184 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ-------QPIFTV 184 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT-------SCSSSC
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc-------CCeeee
Confidence 588889999885 79999999999999999999999999999999999999 8 87764110 000001
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+... +.......+..++. +..... .. .....++..+++.+|+.. ..+ +.+|||||||||+||
T Consensus 185 pq~~~-----------l~~~~~~~tv~eni-~~~~~~-~~-~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 185 PGCIS-----------ATPISDILDAQLPT-WGQSLT-SG-ATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp SSCCE-----------EEECCSCCCTTCTT-CSCBCB-SS-CCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHH
T ss_pred ccchh-----------hcccccccchhhhh-cccccc-cC-cchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHH
Confidence 00000 00000000000000 000000 00 001123456788899964 344 789999999999999
Q ss_pred HH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHHhhcce-----eEEEc-CC
Q psy10512 245 RA--LYVKPHL----LLLDE-PTNHLDLDACVWLEEELKTYKRILVIISHSQD------FLNGVCTN-----IIHLD-KR 305 (629)
Q Consensus 245 ra--L~~~P~i----LLLDE-PT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~------~l~~~~d~-----ii~l~-~G 305 (629)
|| |+.+|++ ||||| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G 326 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLD 326 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCT
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCC
Confidence 99 9999999 99999 99999999 88888888888999999999988 88899999 99999 99
Q ss_pred eEEEEcCcHH
Q psy10512 306 KLKYYGGNYE 315 (629)
Q Consensus 306 ~i~~~~g~~~ 315 (629)
+++ . ++.+
T Consensus 327 ~iv-~-g~~~ 334 (460)
T 2npi_A 327 GVS-A-VDDV 334 (460)
T ss_dssp TCC-C-CCHH
T ss_pred cEE-E-CCHH
Confidence 998 4 4443
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=239.94 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=74.2
Q ss_pred cCcCcCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAW------QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~ 586 (629)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|.++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 577899999999999999999 799999999999999999999999999876 4689999999998 567999
Q ss_pred EEEEeCCEEE
Q psy10512 587 IWICENGKVT 596 (629)
Q Consensus 587 i~~l~~G~i~ 596 (629)
+++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=237.71 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=75.4
Q ss_pred hcccCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcc
Q psy10512 227 QKKTKDFSGGWRMRIALARALY------VKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCT 297 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d 297 (629)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++++.|.++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 799999999999999999999999988765 6899999999998 56899
Q ss_pred eeEEEcCCeEEE
Q psy10512 298 NIIHLDKRKLKY 309 (629)
Q Consensus 298 ~ii~l~~G~i~~ 309 (629)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=219.19 Aligned_cols=145 Identities=19% Similarity=0.100 Sum_probs=94.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhcc
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (629)
||||+|++|++++|+||||||||||++++.+. ...+.. +..+ .+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~-------------------d~~~--------g~~~~ 47 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS-------------------DFCR--------GLMSD 47 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH-------------------HHHH--------HHHCS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc-------------------HHHH--------HHhcC
Confidence 68999999999999999999999999986531 111110 0000 00000
Q ss_pred CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264 (629)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD 264 (629)
+..........+.. ....+ ......|... ..+ .....|||||||++|||||+.+|++|+|||||++||
T Consensus 48 -~~~~~~~~~~~~~~--------~~~~~-~~~~~~g~~~-~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld 115 (171)
T 4gp7_A 48 -DENDQTVTGAAFDV--------LHYIV-SKRLQLGKLT-VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQ 115 (171)
T ss_dssp -STTCGGGHHHHHHH--------HHHHH-HHHHHTTCCE-EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHH
T ss_pred -cccchhhHHHHHHH--------HHHHH-HHHHhCCCeE-EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHH
Confidence 00000000000000 01111 1222345432 222 345679999999999999999999999999999999
Q ss_pred HH----------------HHHHHHHHHh---hcCCEEEEEecCHHHHHh
Q psy10512 265 LD----------------ACVWLEEELK---TYKRILVIISHSQDFLNG 294 (629)
Q Consensus 265 ~~----------------~~~~l~~~L~---~~~~tvIivsHd~~~l~~ 294 (629)
+. ....+.+.|+ +.|.|+|+||||++++..
T Consensus 116 ~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 116 ERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 99 5577777753 337899999999999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-26 Score=217.22 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=96.5
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHH
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (629)
|+||+|++|++++|+||||||||||++++.+-. .........++++|..... ....... ....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~d~~~g~~~~~~~~~-----~~~~~~~------~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISSDFCRGLMSDDENDQ-----TVTGAAF------DVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEHHHHHHHHCSSTTCG-----GGHHHHH------HHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEccHHHHHHhcCcccch-----hhHHHHH------HHHH
Confidence 689999999999999999999999999865321 1111111112223221100 0000000 0001
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHH
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME----------------TIDALADA 562 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~----------------~~~~l~~~ 562 (629)
.........|...... .....||||||||+|||+++.+|++|+|||||++||+. ....+.+.
T Consensus 64 ~~~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 64 YIVSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp HHHHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 1112223345543322 23567999999999999999999999999999999999 55788887
Q ss_pred Hhhc---CceEEEEecCHHHHHhh
Q psy10512 563 INDF---EGGLVLVSHDFRLINQV 583 (629)
Q Consensus 563 l~~~---~~~vi~vsHd~~~~~~~ 583 (629)
|.++ +.|+|+||||++++..+
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHHE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhhh
Confidence 5443 67899999999999763
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-27 Score=230.82 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=95.8
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC--------CceeEEeeccchhccc-CCCCCHHH
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLRFARYHQHLHELL-DLDISPLD 485 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~~~ 485 (629)
.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... ....++|++|...+.+ ........
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 378885 89999999999999999999999999 9999998431 1224677777642222 11000011
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
.+. .....+.+.++++. |+ ||||||+|||||+.+|+||||||||++ ++..+.+.|.+
T Consensus 89 ~~~----~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 89 ALR----DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp HHT----TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTT
T ss_pred HHH----HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHH
Confidence 111 00112345555554 33 999999999999999999999999999 88899999987
Q ss_pred c--CceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 566 F--EGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 566 ~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
+ +.+|| ||||++++.. +....+|.
T Consensus 146 l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 146 LGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp BCTTCEEE-EEEC----------------CC
T ss_pred hcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 7 45788 9999987753 33445554
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-27 Score=229.40 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=95.3
Q ss_pred EeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHH
Q psy10512 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175 (629)
Q Consensus 96 ~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (629)
+|+++.+|+|+ ++|++++|+|||||||||||++|+|+ .|++|++......... ......+.++.+..
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-VEAGEKLGFLPGTL------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-CCTTCCCCSSCC---------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-hhhhcceEEecCCH-------
Confidence 46667789986 89999999999999999999999999 9999998532111110 00011111111110
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEE
Q psy10512 176 KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255 (629)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLL 255 (629)
.+.+..+ .. ..+..+.... ...++.++++. |+ ||||||+|||||+.+|+|||
T Consensus 76 --~enl~~~--~~------~~~~~~~~~~---~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 --NEKIDPY--LR------PLHDALRDMV---EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp ------CTT--TH------HHHHHHTTTS---CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEE
T ss_pred --HHHHHHH--HH------HHHHHHHHhc---cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEE
Confidence 0011000 00 0001111100 01234555554 32 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHh
Q psy10512 256 LDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNG 294 (629)
Q Consensus 256 LDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~ 294 (629)
|||||++ ++.++++.|+++ +.||| ||||++++..
T Consensus 128 LDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred EeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 9999999 888888888776 57888 9999987663
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=208.51 Aligned_cols=142 Identities=12% Similarity=0.109 Sum_probs=101.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCC-ccEEEE-----CCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRK-----NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~-----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
+++|+||||||||||+++|+|++... .|.... .....++|.+|... ..+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~--------~~~~~--------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE--------GKKKI--------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT--------CCEEE---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc--------HHHHH---------------
Confidence 68999999999999999999998522 222110 01123455554421 00010
Q ss_pred HHHHcCCCC-cccccCcCcCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCceEEEEe
Q psy10512 503 IIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYL-----AWQAPHLLLLDE--PTNHLDMETIDALADAINDFEGGLVLVS 574 (629)
Q Consensus 503 ~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--PT~~LD~~~~~~l~~~l~~~~~~vi~vs 574 (629)
+..+++.. ....+++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.++|++|
T Consensus 59 -~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 59 -FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp -EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred -HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 01111111 12345678999999999999996 999999999999 9999999999999999988767788888
Q ss_pred ---cCHHHHHhhcCEEEEEeCCEEEEe
Q psy10512 575 ---HDFRLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 575 ---Hd~~~~~~~~d~i~~l~~G~i~~~ 598 (629)
||.+++..+|++ .+|++..+
T Consensus 138 H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 138 PIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp CSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred ccCCCchHHHHHHhc----CCcEEEEe
Confidence 599999999997 45666543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=218.82 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred ccCcCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEE-
Q psy10512 515 VCPIRQLSDGQKCRVVFAYLAW----QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEI- 587 (629)
Q Consensus 515 ~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i- 587 (629)
+.++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.+.|.++ +.+||+|||+.+ +..+||++
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~ 292 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH 292 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence 3467899999999999999997 688999999999999999999999999887 458999999965 45789987
Q ss_pred -EEEeCCEEEEecCCHHH
Q psy10512 588 -WICENGKVTKWEGNILD 604 (629)
Q Consensus 588 -~~l~~G~i~~~~g~~~~ 604 (629)
++|.+|.......+.++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 88888876555555444
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=219.06 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred hhcccCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhccee
Q psy10512 226 QQKKTKDFSGGWRMRIALARALY----VKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LAraL~----~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~i 299 (629)
.++++.+|||||||||+||+||+ .+|+||||||||++||+..+.++.+.|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678999999999999999997 689999999999999999999999999876 579999999965 56689987
Q ss_pred --EEEcCCeEEEEcCc
Q psy10512 300 --IHLDKRKLKYYGGN 313 (629)
Q Consensus 300 --i~l~~G~i~~~~g~ 313 (629)
++|.+|........
T Consensus 292 ~~v~~~~g~s~~~~~~ 307 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVE 307 (322)
T ss_dssp EEEEESSSCEEEEECC
T ss_pred EEEEEeCCEEEEEEEE
Confidence 88898866554333
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-24 Score=203.02 Aligned_cols=81 Identities=6% Similarity=-0.025 Sum_probs=71.8
Q ss_pred hhhcccCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe---cCHHHHHh
Q psy10512 225 MQQKKTKDFSGGWRMRIALARA-----LYVKPHLLLLDE--PTNHLDLDACVWLEEELKTYKRILVIIS---HSQDFLNG 294 (629)
Q Consensus 225 ~~~~~~~~LSGGqrqRv~LAra-----L~~~P~iLLLDE--PT~~LD~~~~~~l~~~L~~~~~tvIivs---Hd~~~l~~ 294 (629)
..++++.+||||||||++||+| |+.+|++||||| ||++||+....++.+.|.+.+.|+|++| ||++++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 4567889999999999999996 999999999999 9999999999999999988778788888 59999999
Q ss_pred hcceeEEEcCCeEEE
Q psy10512 295 VCTNIIHLDKRKLKY 309 (629)
Q Consensus 295 ~~d~ii~l~~G~i~~ 309 (629)
+|++ .+|+++.
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 9998 4455543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-25 Score=240.47 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=128.7
Q ss_pred eEeeeeeEEEeCCC--------------------EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce--eEEeeccc
Q psy10512 415 WIYRNLEFGIDLDT--------------------RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL--RFARYHQH 472 (629)
Q Consensus 415 ~il~~vsl~i~~Ge--------------------~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~~~~~~q~ 472 (629)
.+++++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|..++.. +.++++|+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 37999999999999 999999999999999999999999999999877632 12555554
Q ss_pred hhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChh--HHHHHHHHHHHcc----------CCC
Q psy10512 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG--QKCRVVFAYLAWQ----------APH 540 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 540 (629)
. ....+++.++..... ....+.++++.+++.+.. ..+ . |||| |+||+.||++|+. +|+
T Consensus 117 ~---~~~~ltv~D~~g~~~----~~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 117 P---NIPNVVFWDLPGIGS----TNFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp S---SCTTEEEEECCCGGG----SSCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred c---ccCCeeehHhhcccc----hHHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 2 112233333221111 123467889999986542 223 3 9999 9999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--------C----ceEEEEecCHHH--HHhhcCEEE-EEeCCE
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF--------E----GGLVLVSHDFRL--INQVAEEIW-ICENGK 594 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~--------~----~~vi~vsHd~~~--~~~~~d~i~-~l~~G~ 594 (629)
+|+|||||+|||+.++..+++.|+++ + .+|+++||++.. +..+||+|. .+..|.
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999998888777654 1 347788999887 889999885 344443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=201.83 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=75.3
Q ss_pred hcccC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc
Q psy10512 227 QKKTK-DFSGGWRMRIALARALY---------VKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVC 296 (629)
Q Consensus 227 ~~~~~-~LSGGqrqRv~LAraL~---------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~ 296 (629)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46777 89999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred ceeEEEcCCeEEEEcCc
Q psy10512 297 TNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 297 d~ii~l~~G~i~~~~g~ 313 (629)
|++++|++|+++..+.+
T Consensus 335 ~~i~~l~~G~i~~~g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTPVADE 351 (359)
T ss_dssp SEEEEEETTEEEECCCT
T ss_pred CEEEEEECCEEEecCCH
Confidence 99999999999876544
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=202.47 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=68.5
Q ss_pred hhcccCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q psy10512 226 QQKKTKDFSGGWRM------RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVC 296 (629)
Q Consensus 226 ~~~~~~~LSGGqrq------Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~ 296 (629)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|.++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888889999999999999999999999999988765 469999999976 56789
Q ss_pred ceeEEEc
Q psy10512 297 TNIIHLD 303 (629)
Q Consensus 297 d~ii~l~ 303 (629)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999885
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-24 Score=227.51 Aligned_cols=172 Identities=14% Similarity=0.114 Sum_probs=122.7
Q ss_pred eeeeEeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc
Q psy10512 100 CELLQDTMLELNCGR--------------------RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~ 159 (629)
..+|++|||+|++|+ ++||+||||||||||+|+|+|+..|+.|++.+.+... ...
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~--t~~--- 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV--TME--- 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec--cee---
Confidence 468999999999999 9999999999999999999999999999887643211 000
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChH--H
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG--W 237 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG--q 237 (629)
..+.+.. .. +.. .+++.+ .+. ....++.++|+.+++.. . +..+. |||| |
T Consensus 111 --~~v~q~~--------------~~-~~l------tv~D~~-g~~--~~~~~~~~~L~~~~L~~-~-~~~~~-lS~G~~~ 161 (413)
T 1tq4_A 111 --RHPYKHP--------------NI-PNV------VFWDLP-GIG--STNFPPDTYLEKMKFYE-Y-DFFII-ISATRFK 161 (413)
T ss_dssp --CEEEECS--------------SC-TTE------EEEECC-CGG--GSSCCHHHHHHHTTGGG-C-SEEEE-EESSCCC
T ss_pred --EEecccc--------------cc-CCe------eehHhh-ccc--chHHHHHHHHHHcCCCc-c-CCeEE-eCCCCcc
Confidence 0000000 00 000 000000 000 01234678899999853 2 33344 9999 9
Q ss_pred HHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCEEEEEecCHHH--HH
Q psy10512 238 RMRIALARALYV----------KPHLLLLDEPTNHLDLDACVWLEEELKTY------------KRILVIISHSQDF--LN 293 (629)
Q Consensus 238 rqRv~LAraL~~----------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~------------~~tvIivsHd~~~--l~ 293 (629)
+||++||+||+. +|++|||||||++||+.++..+++.|+++ ..+|+++||+++. +.
T Consensus 162 kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e 241 (413)
T 1tq4_A 162 KNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 241 (413)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHH
Confidence 999999999999 99999999999999999988887766543 2468888999987 99
Q ss_pred hhcceeE-EEcCC
Q psy10512 294 GVCTNII-HLDKR 305 (629)
Q Consensus 294 ~~~d~ii-~l~~G 305 (629)
.+||+|. .|..|
T Consensus 242 ~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 242 VLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHhCccc
Confidence 9999996 55544
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-25 Score=228.56 Aligned_cols=163 Identities=21% Similarity=0.178 Sum_probs=120.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
.|+++||+|.|+ . .+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. .+++|.... +.
T Consensus 101 ~i~~~~vs~~y~--~-~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~l-f~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF--I-NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHF-WL 166 (305)
T ss_dssp HHHHTTCCHHHH--H-HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGG-GG
T ss_pred eEEEEEEEEEcC--h-hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCcccc-cc
Confidence 488999999996 2 4899999999999999999999999999999999999 89984 344444221 11
Q ss_pred CCCCHHH-HHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 479 LDISPLD-YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 479 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
.++.+ ++... +. . ...+.+.++.+ +.... + ...|||||||| ||||+.+|+||| |++||+.+..
T Consensus 167 --~ti~~~ni~~~-~~-~-~~~~~~~i~~~-L~~gl-d--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~ 230 (305)
T 2v9p_A 167 --ASLADTRAALV-DD-A-THACWRYFDTY-LRNAL-D--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAED 230 (305)
T ss_dssp --GGGTTCSCEEE-EE-E-CHHHHHHHHHT-TTGGG-G--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCG
T ss_pred --ccHHHHhhccC-cc-c-cHHHHHHHHHH-hHccC-C--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHH
Confidence 12222 22111 11 1 12455666664 43322 2 57899999999 999999999999 9999999888
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
.+.. +||++..+ .+||+| +|++|+|+ ..|+.+++
T Consensus 231 ~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 231 RYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 7752 29998876 579999 99999997 57998887
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=202.15 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=69.1
Q ss_pred ccCcCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcC
Q psy10512 515 VCPIRQLSDGQKC------RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 515 ~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d 585 (629)
.+++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|.++ +.+||+||||.+ +..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 3577899999999 678888889999999999999999999999999999876 348999999966 567899
Q ss_pred EEEEEe--CCEE
Q psy10512 586 EIWICE--NGKV 595 (629)
Q Consensus 586 ~i~~l~--~G~i 595 (629)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999986 5543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-22 Score=199.68 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=99.8
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAE 179 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (629)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+. ...........+.++.+.... +...
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~--~~~~~~~~~~~i~~~~q~~~~---~~~~-- 79 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSAT--TRAPRPGEVDGVDYHFIDPTR---FQQL-- 79 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEE--SSCCCTTCCBTTTBEECCHHH---HHHH--
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEccccc--ccCCcccccCCCeeEecCHHH---HHHH--
Confidence 346777 7999999999999999999999999999874222111111 000000001111111111111 1000
Q ss_pred HHhccCChhHHHHHHHHHh--hhhccChhhHHHHHHHH------HHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC
Q psy10512 180 QLVACEDDESQEQLMDIYD--RLDDISADTAEARAANI------LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251 (629)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~------L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 251 (629)
....... ....++. .+.........+++.+. ++.+|+. ...++++..|| +|+.+|
T Consensus 80 --~~~~~l~---~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p 142 (207)
T 1znw_A 80 --IDQGELL---EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPP 142 (207)
T ss_dssp --HHTTCEE---EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECS
T ss_pred --HhcCCce---eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECC
Confidence 0000000 0000000 11112222334445554 5555663 55677888888 999999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 252 HLLLLDEPTNHL----DLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 252 ~iLLLDEPT~~L----D~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
++++|||||++| |+..+..+.+.++++ +.|+|+||||++++..+||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 777888888776543 6799999999999999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-22 Score=209.13 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=119.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLD 480 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~ 480 (629)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+++++|... .....
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 45788899999999999999999999999999999999999886521 2455555431 01222
Q ss_pred CCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q psy10512 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDA 558 (629)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~ 558 (629)
.++.+++........+ ..+++.+|+.+.. ..++.+|| +||++|||+++.+|+ +|+|| ||+|||+....
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCC-HHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcch-hHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 2333433211000000 1245667776543 34678999 999999999999999 99999 99999987652
Q ss_pred HHHHHhhcCceEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy10512 559 LADAINDFEGGLVLVSH---------DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 559 l~~~l~~~~~~vi~vsH---------d~~~~~~~~d~i~~l~~G~i 595 (629)
...-...+.++|++|| .++.+..++..|.++..|+.
T Consensus 240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 2333346789999999 67788888899999999964
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-25 Score=225.93 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=112.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|.|..+ ..+.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~-v~q~~~lf~~t------- 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF-ANHKSHFWLAS------- 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG-GGTTSGGGGGG-------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE-ecCcccccccc-------
Confidence 488999999998 77999999999999999999999999999999999987 6777431 11110000000
Q ss_pred chHHHHHHHHHHH-HHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAE-QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
+.. .+... .... ..+.+.++.+ ++. ..+ +..|||||||| ||
T Consensus 169 ----------i~~~ni~~~----------------~~~~-----~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---AR 210 (305)
T 2v9p_A 169 ----------LADTRAALV----------------DDAT-----HACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AA 210 (305)
T ss_dssp ----------GTTCSCEEE----------------EEEC-----HHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CC
T ss_pred ----------HHHHhhccC----------------cccc-----HHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HH
Confidence 000 00000 0000 1233444443 332 223 78999999999 99
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||+.+|+||| |++||+.+...+.. +||++..+ .+||+| +|++|++++. |+.+.
T Consensus 211 All~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~~-g~~~e 263 (305)
T 2v9p_A 211 VQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPFN-ITDAD 263 (305)
T ss_dssp CEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCCC-CCHHH
T ss_pred HHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEEe-CCHHH
Confidence 9999999999 99999998877752 28998875 589999 9999999865 45443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=198.46 Aligned_cols=84 Identities=21% Similarity=0.106 Sum_probs=75.2
Q ss_pred cCcC-cCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcC
Q psy10512 516 CPIR-QLSDGQKCRVVFAYLAW---------QAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 516 ~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d 585 (629)
+++. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.|.++..++|++||+ +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 4666 79999999999999999 8999999999999999999999999999988889999995 33 899
Q ss_pred EEEEEeCCEEEEecCCHHH
Q psy10512 586 EIWICENGKVTKWEGNILD 604 (629)
Q Consensus 586 ~i~~l~~G~i~~~~g~~~~ 604 (629)
++++|++|+|+ ..|++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~ 353 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEM 353 (359)
T ss_dssp EEEEEETTEEE-ECCCTTT
T ss_pred EEEEEECCEEE-ecCCHHH
Confidence 99999999997 4676654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-22 Score=211.33 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=100.2
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
++++++||.+++|++++|+||||||||||+++|+|++.|+.|.+.+.+.. ++...
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~-e~~~~------------------------ 213 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE-EIVFK------------------------ 213 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC-CCCCS------------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee-ccccc------------------------
Confidence 37899999999999999999999999999999999999999988875321 00000
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
.. ... +++ +.. |||+||++|||||..+|++|||||||
T Consensus 214 -----~~---------~~~-------------------i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 214 -----HH---------KNY-------------------TQL--------FFG--GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp -----SC---------SSE-------------------EEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred -----cc---------hhE-------------------EEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 00 000 000 000 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 261 NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
+. +... ++..+..-+.|+|+++|+.+ +...|||+++|.+|..
T Consensus 251 ~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 251 SS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp ST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred hH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 82 2222 33333332347999999999 6778999999998853
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-23 Score=202.40 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=98.3
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC-------ceeEEeeccchhcccCCCCCHHHHH
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
+++.| .+|++|++++|+||||||||||+++|+|++++..+.+.... ...++|++|..... ..+++.+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~l 85 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQGEL 85 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHTTCE
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhcCCc
Confidence 36777 78999999999999999999999999999963322211100 12356666654211 111111111
Q ss_pred h---------h--cCCChhhHHHHHHH------HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 488 L---------Q--SFPEVKDREEMRKI------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 488 ~---------~--~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
. . +.+.....+.+.+. ++.+|+... ...++..|| +|+.+|++++|||||++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~lS-----------~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAI-KKTMPEAVT-----------VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHH-HHHCTTSEE-----------EEEECSCHHHHHHHHHT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHH-HHhcCCcEE-----------EEEECCCHHHHHHHHHh
Confidence 0 0 11111112223333 444455322 233456777 89999999999999999
Q ss_pred C----CHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 551 L----DMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 551 L----D~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
| |+..+..+.+++.++ +.++|+||||++++..+||+|++|.
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 8 777888888887654 4589999999999999999999984
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=200.21 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=70.4
Q ss_pred cCcCcC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEE
Q psy10512 516 CPIRQL-SDGQKCRVVFAYLAWQAP--HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWIC 590 (629)
Q Consensus 516 ~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l 590 (629)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|.++ +.+||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467888 999999999999999999 999999999999999999999998876 568999999999885 69999999
Q ss_pred eCC
Q psy10512 591 ENG 593 (629)
Q Consensus 591 ~~G 593 (629)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-23 Score=215.96 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=127.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEE-----------------------EeCCCEEEEECCCCCchHHHHHHHHcCCCCCc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFG-----------------------IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~-----------------------i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~ 455 (629)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 588999999994 256776664 88999999999999999999999999999987
Q ss_pred cEEEECCceeEEeeccchhcccCCCCCHHHHHhh----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH
Q psy10512 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 456 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 531 (629)
|. ..+++++|+.. +... ++.+++.. +.+...+.+.+.++|+.++ .+.. ..++..|||||+|||++
T Consensus 119 G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~-~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSD-YACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCS-CEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcc-cCCcccCChhhhhhhhh
Confidence 64 35778888643 2222 55554421 1222234567788888888 4433 24567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH-HhhcCEEEEEeCC
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI-NQVAEEIWICENG 593 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~-~~~~d~i~~l~~G 593 (629)
|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+||.+.. ..+++|...+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998522 12333334578889988765 3445565555444
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-21 Score=204.54 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=100.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
+++++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++...+. .. . ...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~---------~~-~----------~~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV---------FK-H----------HKN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC---------CS-S----------CSS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc---------cc-c----------chh--
Confidence 6899999999999999999999999999999999999999999987642110 00 0 000
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEec
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsH 575 (629)
.+++ +.. |||+||++||+||..+|++|||||||+. +..+ +++.+..-+.|+|++||
T Consensus 218 ----------~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H 273 (330)
T 2pt7_A 218 ----------YTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLH 273 (330)
T ss_dssp ----------EEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEE
T ss_pred ----------EEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEc
Confidence 0000 000 8999999999999999999999999982 2222 23333322347999999
Q ss_pred CHHHHHhhcCEEEEEeCCEE
Q psy10512 576 DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 576 d~~~~~~~~d~i~~l~~G~i 595 (629)
+.+ +...|||+++|.+|..
T Consensus 274 ~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 274 AGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp CSS-HHHHHHHHHHHHHTSG
T ss_pred ccH-HHHHhhhheehhcCCc
Confidence 999 6678999999988853
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-23 Score=204.99 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEEeeccchhcccCC--CC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFARYHQHLHELLDL--DI 481 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~~~~q~~~~~~~~--~~ 481 (629)
-|+||||+|++|++++|+||||||||||+++|+|++ | |.|.+ +. ..++|++|........ ..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 98987 31 1244555543211000 00
Q ss_pred CHHHH--HhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHH
Q psy10512 482 SPLDY--MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF-----AYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 482 ~~~~~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDEPT~~LD~~ 554 (629)
...++ +...... .....+.++++...+. ... ..|||||+||++| +++++..|++++|||||+++|.+
T Consensus 88 ~~l~~~~~~~~~~g-~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~ 161 (218)
T 1z6g_A 88 DFLEYDNYANNFYG-TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTE 161 (218)
T ss_dssp CEEEEEEETTEEEE-EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCC
T ss_pred chhhhhhcccccCC-CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCC
Confidence 00000 0000001 1234566777654431 111 4799999999999 89999999999999999999998
Q ss_pred HHHHHHHHHhhc
Q psy10512 555 TIDALADAINDF 566 (629)
Q Consensus 555 ~~~~l~~~l~~~ 566 (629)
+...+.+.|...
T Consensus 162 ~~~~i~~~l~~~ 173 (218)
T 1z6g_A 162 NQEQIQKRMEQL 173 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888887777543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-21 Score=202.09 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=120.2
Q ss_pred EeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHH
Q psy10512 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175 (629)
Q Consensus 96 ~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (629)
.|+....+.++||++++|++++|+||||||||||+++|+|++.|..|.+.+.+.+ ... ..+ . .+ ...+.
T Consensus 83 ~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d--~~r--~~a---~---~q-l~~~~ 151 (302)
T 3b9q_A 83 MLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD--TFR--AAA---S---DQ-LEIWA 151 (302)
T ss_dssp HHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC--CSC--HHH---H---HH-HHHHH
T ss_pred HhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec--ccc--hhH---H---HH-HHHHH
Confidence 3443333467899999999999999999999999999999999998988775321 110 000 0 00 00000
Q ss_pred HHHHHHhccCChhH-HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--
Q psy10512 176 KLAEQLVACEDDES-QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH-- 252 (629)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~-- 252 (629)
. ...+...+.... ......+++.+...... .....+++.+|+. +..++++.+|| +||++|||||+.+|+
T Consensus 152 ~-~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~---~~d~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~ 223 (302)
T 3b9q_A 152 E-RTGCEIVVAEGDKAKAATVLSKAVKRGKEE---GYDVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEI 223 (302)
T ss_dssp H-HHTCEEECCC--CCCHHHHHHHHHHHHHHT---TCSEEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEE
T ss_pred H-hcCceEEEecCCccCHHHHHHHHHHHHHHc---CCcchHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCee
Confidence 0 001111111100 00011111111000000 0001245677875 34567788999 999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec---------CHHHHHhhcceeEEEcCCeE
Q psy10512 253 LLLLDEPTNHLDLDACVWLEEELKTYKRILVIISH---------SQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 253 iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsH---------d~~~l~~~~d~ii~l~~G~i 307 (629)
+|+|| ||++||+.... ..+-...+.|+|++|| .++.+..++..|.++..|+.
T Consensus 224 lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 224 LLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999 99999998653 3333356899999999 67778888889999999964
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-21 Score=204.81 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=118.5
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCCC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLDI 481 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~ 481 (629)
.+||++++|++++|+||||||||||+++|+|+++|+.|+|.+.+.. .+++++|.... .....
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChhh
Confidence 4678889999999999999999999999999999999999886521 24455543210 11122
Q ss_pred CHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q psy10512 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l 559 (629)
++.+++........+ ..+++.+|+.+.. ..++.+|| +||++|||+++.+|+ +|||| ||+|||+.+..
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 333333211000000 1245567776543 34678999 999999999999999 99999 99999988653
Q ss_pred HHHHhhcCceEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy10512 560 ADAINDFEGGLVLVSH---------DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsH---------d~~~~~~~~d~i~~l~~G~i 595 (629)
...-...+.++|++|| .+..+...+..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333345789999999 57778788899999999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-22 Score=198.59 Aligned_cols=180 Identities=12% Similarity=0.036 Sum_probs=101.3
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCC--CcchhhhhhhchHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPAS--DKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 176 (629)
..-|+||||+|++|++++|+||||||||||+++|+|++ | |.+.+ +.... .... ....+.++..... .+..
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~---~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT---IFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH---HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH---HHHH
Confidence 34699999999999999999999999999999999987 5 88876 32111 0000 0111111111111 0100
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH-----HHHHccCC
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL-----ARALYVKP 251 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L-----AraL~~~P 251 (629)
...+....... .+.... ... ....+.++++...+. ..+ .+|||||+||++| |++|+.+|
T Consensus 83 ~~~~~~~l~~~-------~~~~~~--~g~--~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYD-------NYANNF--YGT--LKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEE-------EETTEE--EEE--EHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhh-------hccccc--CCC--cHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 00000000000 000000 011 123456666654431 222 5799999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----------CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 252 HLLLLDEPTNHLDLDACVWLEEELKTY----------KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 252 ~iLLLDEPT~~LD~~~~~~l~~~L~~~----------~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
++++|||||+++|.++...+.+.|... ..+.|+|+||++.+...+++++.-
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLN 207 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999988777666655432 356778888888887777777643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=188.85 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=112.9
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
..+|+++++.|++|++++|+||||||||||++.|+|...|..| .+.+... +... .....++....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~--e~~~------------~~~~~r~~~~~ 87 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML--EESV------------EETAEDLIGLH 87 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES--SSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC--cCCH------------HHHHHHHHHHH
Confidence 3579999999999999999999999999999999999888767 5544321 2110 00111111111
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH-HHHHHHHHHHccCCCEEEEe
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW-RMRIALARALYVKPHLLLLD 257 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-rqRv~LAraL~~~P~iLLLD 257 (629)
. ..+......+ ... .+...+..+.+.++++..++. ....+..+|.++ +||+. |+++..+|++||||
T Consensus 88 ~----~~~~~~~~~l-~~~----~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilD 154 (296)
T 1cr0_A 88 N----RVRLRQSDSL-KRE----IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILD 154 (296)
T ss_dssp T----TCCGGGCHHH-HHH----HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEE
T ss_pred c----CCChhhcccc-ccC----CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEc
Confidence 0 0010000000 000 011122334455555544442 123346789999 66666 99999999999999
Q ss_pred CCCC---C---CCH-HHHHHHHHHHh----hcCCEEEEEecCH--H--------------------HHHhhcceeEEEcC
Q psy10512 258 EPTN---H---LDL-DACVWLEEELK----TYKRILVIISHSQ--D--------------------FLNGVCTNIIHLDK 304 (629)
Q Consensus 258 EPT~---~---LD~-~~~~~l~~~L~----~~~~tvIivsHd~--~--------------------~l~~~~d~ii~l~~ 304 (629)
|||+ + +|. .....+.+.|+ +.+.|||++||+. + .+..+||+|++|++
T Consensus 155 ept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred CccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 9999 4 455 55566666654 4588999999994 5 78889999999998
Q ss_pred CeE
Q psy10512 305 RKL 307 (629)
Q Consensus 305 G~i 307 (629)
|+.
T Consensus 235 ~~~ 237 (296)
T 1cr0_A 235 NQQ 237 (296)
T ss_dssp C--
T ss_pred Ccc
Confidence 864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-21 Score=212.52 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=117.6
Q ss_pred EEEEeEEEEeCCeeeeEee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDT-MLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
++++++++.|++ |+.+ +..|.+|++++|+||||||||||+++|+|...|. |.-.++...++.
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~------------- 320 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES------------- 320 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC-------------
T ss_pred cccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC-------------
Confidence 445555554432 2322 4589999999999999999999999999987764 542122211110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.. .+ .... ..+ .++ +.+ +..+|+. ...+.++.+|||||+||+++|++
T Consensus 321 --~~--~l---~~~~----------------~~~-g~~-------~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~ 367 (525)
T 1tf7_A 321 --RA--QL---LRNA----------------YSW-GMD-------FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEI 367 (525)
T ss_dssp --HH--HH---HHHH----------------HTT-SCC-------HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHH
T ss_pred --HH--HH---HHHH----------------HHc-CCC-------HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHH
Confidence 00 00 0000 000 111 011 2234543 34567789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHH-----HHHHHHHHH---hhcCCEEEEEecCH----------HHHHhhcceeEEEcCCe
Q psy10512 247 LYVKPHLLLLDEPTNHLDLD-----ACVWLEEEL---KTYKRILVIISHSQ----------DFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~-----~~~~l~~~L---~~~~~tvIivsHd~----------~~l~~~~d~ii~l~~G~ 306 (629)
+..+|++|||| ||++||.. .+..+.+++ ++.+.|+|+|||+. .++..+||+|++|++|+
T Consensus 368 l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 368 NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999 99999998 777666544 55689999999999 88889999999999886
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-21 Score=211.58 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=125.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------ 464 (629)
+++++++++++.|+.+. .+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|..
T Consensus 129 ~~~l~~~~v~~~~~tg~-~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGV-RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCSC-HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCCc-eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35789999999996333 489999 9999999999999999999999999999999999999887641
Q ss_pred -------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHHHHHH
Q psy10512 465 -------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 465 -------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lAra 534 (629)
.+++++|. +.++...+.. .+.+....+.++-... .....+..||+|| |||+||
T Consensus 207 ~~~~l~r~i~~v~q~-------~~~~~~~~~v-------~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA-- 269 (438)
T 2dpy_A 207 GPDGRARSVVIAAPA-------DVSPLLRMQG-------AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA-- 269 (438)
T ss_dssp HHHHHHTEEEEEECT-------TSCHHHHHHH-------HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--
T ss_pred cccccCceEEEEECC-------CCCHHHHHHH-------HHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--
Confidence 13344432 1112111100 0001111111111100 0112356899999 999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------c------eEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFE------G------GLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~------~------~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+.+|++ |+|||+.....+.+++.++. + ||+++|||++ ..+||++++|.+|+|+.
T Consensus 270 -l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 270 -IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp -TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred -hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 888888 99999999999999997762 3 7899999998 67899999999999863
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-20 Score=219.09 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=113.5
Q ss_pred CCeEEEEE-----EEEEEcCCCCeEeeeeeEEEeC-------CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce
Q psy10512 397 PPVIMVQN-----VSFRYSDDGPWIYRNLEFGIDL-------DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL 464 (629)
Q Consensus 397 ~~~l~~~~-----l~~~y~~~~~~il~~vsl~i~~-------Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~ 464 (629)
.++|++++ |++.|.++. .+++|++|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~-~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDD-FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCC-CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CceEEEEeccccEEEEEecCCc-eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 45799999 999994333 489999999987 899999999999999999999 998752 1
Q ss_pred eEE-eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 465 RFA-RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 465 ~~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
.+| |++|... .+++.+.+. .++|+.+... ...+++|+++++ +++|++++.+|.|||
T Consensus 817 qiG~~Vpq~~~-----~l~v~d~I~----------------~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 QMGCYVPAEVC-----RLTPIDRVF----------------TRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp TTTCCEESSEE-----EECCCSBEE----------------EECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred heeEEeccCcC-----CCCHHHHHH----------------HHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 234 6666432 112222221 1234433222 234678888775 999999999999999
Q ss_pred EeCCCCCCCHHHH-HHHHHHH---hhc-CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 544 LDEPTNHLDMETI-DALADAI---NDF-EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 544 LDEPT~~LD~~~~-~~l~~~l---~~~-~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
|||||+|+|+... ..++..| .+. +.++|++|||.+++..+||+++++ +|++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999998763 3344444 333 668999999999999999998876 46664
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-21 Score=206.57 Aligned_cols=184 Identities=15% Similarity=0.255 Sum_probs=124.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
+++++++++++.|+.+. .+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|... ......
T Consensus 43 ~~~i~~~~l~~~~~tg~-~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~ 115 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGV-RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEF 115 (347)
T ss_dssp SCSTTCCCCCSEECCSC-HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHH
T ss_pred CCCeeecccceecCCCC-EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHH
Confidence 45789999999996333 489999 99999999999999999999999999999999999987765320 000000
Q ss_pred cCCCCCH--HHH--HhhcCCChhhHHHHHHHHHHcCCC------C-c--ccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 477 LDLDISP--LDY--MLQSFPEVKDREEMRKIIGRYGLT------G-R--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 477 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~gl~------~-~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
... ... .+. +...........++...+..+++. + . .....+..||+|| |||++| +.+|++
T Consensus 116 i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 116 LAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp HTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred HHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 000 000 000 000000000111111111111111 0 0 0013567899999 899999 578877
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhcC----c------eEEEEecCHHHHHhhcCEEEEEeCCEEEEecCC
Q psy10512 544 LDEPTNHLDMETIDALADAINDFE----G------GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~~----~------~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 601 (629)
|+|||+.....+.+++.+.+ + ||+++|||++ ..+||+++++.+|+|+. +++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl-~~~ 249 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL-TRE 249 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB-CHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE-eCC
Confidence 99999999999999998762 2 6889999999 67899999999999973 443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-21 Score=207.11 Aligned_cols=189 Identities=13% Similarity=0.174 Sum_probs=121.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.++++++++.|+ +..+|+++ |+|.+|+++||+||||||||||+++|+|+..|+.|.+.+.+. . ...+....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~--~-----~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE--R-----GREVNEFL 116 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC--C-----HHHHHHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc--c-----HHHHHHHH
Confidence 588999999998 77899999 999999999999999999999999999999887665544321 1 00000000
Q ss_pred h-chHHHHHHHHHHHH-Hhc--cCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 E-VDEERVRLEKLAEQ-LVA--CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~-~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
. .... .... +.. ..+......+...+. ...+.+++...+-.-...-..+..||+|| |||
T Consensus 117 ~~~~~~------~~~~~v~~~~~~~~~~~~r~~~~~~----------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 117 ALLPQS------TLSKCVLVVTTSDRPALERMKAAFT----------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp TTSCHH------HHTTEEEEEECTTSCHHHHHHHHHH----------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHH
T ss_pred Hhhhhh------hhhceEEEEECCCCCHHHHHHHHHH----------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHH
Confidence 0 0000 0000 000 000000000000000 00011111111100000014578899999 899
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KR-----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~-----tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
++| +.+|++ |+|||+.....+.+++.+. |. ||+++|||++ ..+||++++|.+|+|+..+
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 999 578877 9999999999999998765 33 7999999999 6789999999999998654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=164.45 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=71.8
Q ss_pred hhcccCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q psy10512 226 QQKKTKDFSGGWRMRIALA------RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVC 296 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LA------raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~ 296 (629)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999998775 579999999995 56799
Q ss_pred ceeEEE--cCCe
Q psy10512 297 TNIIHL--DKRK 306 (629)
Q Consensus 297 d~ii~l--~~G~ 306 (629)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=215.18 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=109.6
Q ss_pred eeEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc
Q psy10512 86 RDVKIAN-----FSITF-HGCELLQDTMLELNC-------GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152 (629)
Q Consensus 86 ~~i~i~n-----ls~~y-~~~~~L~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~ 152 (629)
..|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |++.+...-+. ++.++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~--~Vpq~ 825 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC--YVPAE 825 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC--CEESS
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE--EeccC
Confidence 3599999 99999 667899999999987 999999999999999999999 87543110000 00000
Q ss_pred CCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
. .. ..+.+. ++..+|+.+ ...+..++
T Consensus 826 ~-----~~---------------------------------l~v~d~---------------I~~rig~~d-~~~~~~st 851 (1022)
T 2o8b_B 826 V-----CR---------------------------------LTPIDR---------------VFTRLGASD-RIMSGEST 851 (1022)
T ss_dssp E-----EE---------------------------------ECCCSB---------------EEEECC----------CH
T ss_pred c-----CC---------------------------------CCHHHH---------------HHHHcCCHH-HHhhchhh
Confidence 0 00 000000 112334432 23344567
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHH---HHHhhc-CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC-VWLE---EELKTY-KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~-~~l~---~~L~~~-~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
+|+++++ +++|++++.+|++|||||||+|+|+... ..++ +.|.+. +.++|++||+.+++..+||+++++ +|++
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~ 929 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHM 929 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeE
Confidence 8887775 9999999999999999999999998763 3333 444443 789999999999999999999887 4777
Q ss_pred EE
Q psy10512 308 KY 309 (629)
Q Consensus 308 ~~ 309 (629)
..
T Consensus 930 ~~ 931 (1022)
T 2o8b_B 930 AC 931 (1022)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-22 Score=209.12 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=118.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLE-----------------------LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~ 143 (629)
.|+++||++.|+ +++++++|. +++|+++||+||||||||||+++|+|++.|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 488899999994 677777764 8999999999999999999999999999887764
Q ss_pred eEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc
Q psy10512 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223 (629)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~ 223 (629)
-.+..+.++..... . ...+++.. ... ...........+.++|+.++ .
T Consensus 121 ~~v~~v~qd~~~~~-----------~------t~~e~~~~-------------~~~-~g~~~~~d~~~~~~~L~~l~-~- 167 (312)
T 3aez_A 121 PRVDLVTTDGFLYP-----------N------AELQRRNL-------------MHR-KGFPESYNRRALMRFVTSVK-S- 167 (312)
T ss_dssp CCEEEEEGGGGBCC-----------H------HHHHHTTC-------------TTC-TTSGGGBCHHHHHHHHHHHH-T-
T ss_pred CeEEEEecCccCCc-----------c------cHHHHHHH-------------HHh-cCCChHHHHHHHHHHHHHhC-C-
Confidence 33333333211000 0 00001100 000 01111112345667777776 3
Q ss_pred hhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-HhhcceeEEE
Q psy10512 224 EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL-NGVCTNIIHL 302 (629)
Q Consensus 224 ~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l-~~~~d~ii~l 302 (629)
...+.++.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.++-..+|+|+|+.+.. ..+++|.+.+
T Consensus 168 ~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 168 GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHH
Confidence 23456788999999999999999999999999999999998521 12333323568888888653 4456666666
Q ss_pred cCCe
Q psy10512 303 DKRK 306 (629)
Q Consensus 303 ~~G~ 306 (629)
.++.
T Consensus 243 rd~~ 246 (312)
T 3aez_A 243 RTTA 246 (312)
T ss_dssp TTTG
T ss_pred Hhcc
Confidence 5543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=211.23 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=107.4
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCCCceEEEeecccC
Q psy10512 87 DVKIANFSITF-----HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTREM 153 (629)
Q Consensus 87 ~i~i~nls~~y-----~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L--------~g~~~p~~g~i~i~~~~~~~ 153 (629)
.|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+| .|...|..+. .+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~-~~~------ 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA-EVS------ 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE-EEE------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc-cch------
Confidence 46666654333 234688999999999999999999999999999999 4433332110 000
Q ss_pred CCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCC
Q psy10512 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF 233 (629)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 233 (629)
. +..++..+|+. +.....+
T Consensus 704 ------------------------------------------------~---------~d~i~~~ig~~----d~l~~~l 722 (934)
T 3thx_A 704 ------------------------------------------------I---------VDCILARVGAG----DSQLKGV 722 (934)
T ss_dssp ------------------------------------------------C---------CSEEEEECC-------------
T ss_pred ------------------------------------------------H---------HHHHHHhcCch----hhHHHhH
Confidence 0 00122334443 1224568
Q ss_pred ChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 234 SGGWRMRIALARAL--YVKPHLLLLDEPTNHLDLDACVWL----EEELKT-YKRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 234 SGGqrqRv~LAraL--~~~P~iLLLDEPT~~LD~~~~~~l----~~~L~~-~~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
|+|+.+++.+|++| +.+|++|||||||+|||+.....+ .+.|.+ .+.++|++||+.++. .+||++..+.+|+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~ 801 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLH 801 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeE
Confidence 88888888888888 999999999999999999876555 344544 478999999997765 6899999999998
Q ss_pred EEEE
Q psy10512 307 LKYY 310 (629)
Q Consensus 307 i~~~ 310 (629)
+...
T Consensus 802 v~~~ 805 (934)
T 3thx_A 802 VTAL 805 (934)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-20 Score=198.14 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=116.9
Q ss_pred EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhc
Q psy10512 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA 183 (629)
Q Consensus 104 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (629)
.++||++++|++++|+||||||||||+++|+|++.|..|.+.+...+ ... ... . .+ ...+. ....+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D--~~r--~~a---~---eq-l~~~~-~r~~i~~ 215 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD--TFR--AAA---S---DQ-LEIWA-ERTGCEI 215 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC--CSC--HHH---H---HH-HHHHH-HHHTCEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc--ccc--cch---h---HH-HHHHH-HhcCeEE
Confidence 46899999999999999999999999999999999988888775321 110 000 0 00 00000 0011111
Q ss_pred cCCh-------hHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EE
Q psy10512 184 CEDD-------ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LL 254 (629)
Q Consensus 184 ~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iL 254 (629)
.+.. .+..+...... ....+ ..+++.+|+. +..++.+.+|| +||++|||||+.+|+ +|
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~~-~~~~d--------~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lL 282 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRGK-EEGYD--------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILL 282 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHHH-HTTCS--------EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE
T ss_pred EEecccccChhhhHHHHHHHHH-hCCCH--------HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEE
Confidence 1110 01111111100 00000 1245677875 34567788999 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec---------CHHHHHhhcceeEEEcCCeE
Q psy10512 255 LLDEPTNHLDLDACVWLEEELKTYKRILVIISH---------SQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsH---------d~~~l~~~~d~ii~l~~G~i 307 (629)
+|| ||++||+.... ..+-...+.|+|++|| .++.+...+..|.++..|+.
T Consensus 283 vLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 283 VLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 999 99999998653 2333456899999999 46777788889999998864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-21 Score=207.72 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=124.5
Q ss_pred eeEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..++++++++.|+ +..+|+++ |+|.+|++++|+|||||||||||++|+|+..|+.|.+.+.+... ..+..+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~-------~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG-------REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-------HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec-------HHHHHH
Confidence 3588999999998 67899999 99999999999999999999999999999988877666543210 000000
Q ss_pred hhchHHHHHHHHHHHHHhcc-CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC-chhhhcccCCCChHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVAC-EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGqrqRv~ 242 (629)
.... .........+... ...........+..... ...++....+-. ..+.+ .+..||+|| |||+
T Consensus 202 ~~~~---~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~---------~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENI---LGPDGRARSVVIAAPADVSPLLRMQGAAYAT---------RIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTT---THHHHHHTEEEEEECTTSCHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHH
T ss_pred HHhh---ccccccCceEEEEECCCCCHHHHHHHHHHHH---------HHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHH
Confidence 0000 0000000111111 11111111111111100 000111111100 01122 267799999 9999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK------R------ILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~------~------tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|| +.+|++ |++||+.....+.+.|.+++ + ||+++|||++ ..+||++++|.+|+++..
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEEC
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEe
Confidence 99 888888 99999999999999987652 2 8999999999 678999999999999875
Q ss_pred cC
Q psy10512 311 GG 312 (629)
Q Consensus 311 ~g 312 (629)
+.
T Consensus 337 ~~ 338 (438)
T 2dpy_A 337 RR 338 (438)
T ss_dssp HH
T ss_pred CC
Confidence 43
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=187.74 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred cccCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeE
Q psy10512 228 KKTKDFSGGWRMRIALARALY----VKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNII 300 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~----~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii 300 (629)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 589999999999999999999999999876 35999999997665 5799999
Q ss_pred EEc
Q psy10512 301 HLD 303 (629)
Q Consensus 301 ~l~ 303 (629)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=161.01 Aligned_cols=80 Identities=31% Similarity=0.412 Sum_probs=71.0
Q ss_pred ccCcCcCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcC
Q psy10512 515 VCPIRQLSDGQKCRVVFA------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 515 ~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d 585 (629)
.+++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 457899999999999876 8999999999999999999999999999999876 358999999995 568999
Q ss_pred EEEEE--eCCEE
Q psy10512 586 EIWIC--ENGKV 595 (629)
Q Consensus 586 ~i~~l--~~G~i 595 (629)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 56643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-19 Score=185.32 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=108.2
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEEC-CceeEEeeccchhcc-cCCCCCHHHHHhhc-C
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKN-SHLRFARYHQHLHEL-LDLDISPLDYMLQS-F 491 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~~~~~~~~q~~~~~-~~~~~~~~~~~~~~-~ 491 (629)
+|+++++.|.+|++++|+||||||||||++.|+|.+.|++| .|.+. .......+.+..... ........+.+... .
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 69999999999999999999999999999999999999888 56432 211000000000000 01111111111100 0
Q ss_pred CChhhHHHHHHHHHHcCCCCcccccCcCcCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH
Q psy10512 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQ-KCRVVFAYLAWQAPHLLLLDEPTN---H---LDM-ETIDALADAI 563 (629)
Q Consensus 492 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPT~---~---LD~-~~~~~l~~~l 563 (629)
......+.+..+++..++. ... .+..+|.++ +||+. |+++..+|++|||||||+ + +|. .....+.+.|
T Consensus 104 ~~~~~~~~~~~~l~~~~l~--i~~-~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L 179 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFH--LYD-SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKL 179 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEE--EEC-CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEE--EEC-CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHH
Confidence 0001112233344333331 112 235789999 66666 999999999999999999 5 455 5566677666
Q ss_pred hh----cCceEEEEecCH--H--------------------HHHhhcCEEEEEeCCEE
Q psy10512 564 ND----FEGGLVLVSHDF--R--------------------LINQVAEEIWICENGKV 595 (629)
Q Consensus 564 ~~----~~~~vi~vsHd~--~--------------------~~~~~~d~i~~l~~G~i 595 (629)
++ ++.+||++||+. + .+..+||+|++|++|+.
T Consensus 180 ~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 180 KGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 44 467999999994 5 78889999999998864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-20 Score=182.54 Aligned_cols=142 Identities=19% Similarity=0.187 Sum_probs=98.1
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeeccchhcccCCCCCHHHHHhhcCCChhhH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (629)
|++++|+||||||||||+++|+|+++ ++| |.+++. ..+++.+|.... .. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~~---~------------ 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----TR---G------------ 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----CE---E------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----ce---e------------
Confidence 78999999999999999999999999 889 765431 224444443210 00 0
Q ss_pred HHHHHHHHHcCCCCc------ccccCcCcCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhh
Q psy10512 498 EEMRKIIGRYGLTGR------QQVCPIRQLSDGQKCRV-VFAY---LAWQAPHLLLLDE--PTNHLDMETIDALADAIND 565 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--PT~~LD~~~~~~l~~~l~~ 565 (629)
.+..+++... ....+...+|+||++++ ++++ |++.+|++||||| ||+.+|+...+.|.+++..
T Consensus 60 -----~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 60 -----PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp -----EEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred -----hhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 0111222111 12234457999999988 4454 5899999999999 9999999999999999987
Q ss_pred cCceEE---EEecCH--HHHHhhcCEEEEEeCCEEEEe
Q psy10512 566 FEGGLV---LVSHDF--RLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 566 ~~~~vi---~vsHd~--~~~~~~~d~i~~l~~G~i~~~ 598 (629)
+...|| .||||. .++.+++ .+.+|+|+..
T Consensus 135 ~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp SSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred CCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 655443 456987 5555554 4577777654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-20 Score=189.57 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=85.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEEeeccchhcccCCCCCHHHHHhhcC--CChhhHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDRE 498 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 498 (629)
.++|+||||||||||+|+|+|+..|++|+|.+++. ..+++++|... +...+|+.+++..+. ......+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 48999999999999999999999999999987653 35778887642 223334444322111 1111122
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHH
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFR 578 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~ 578 (629)
.+..++. . ......+.+|||||+|||++||+++. +++|||||.+||+...+. +..|.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~-~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~-l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----E-QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEF-MKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----H-HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHH-HHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----H-HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHH-HHHHHhc-CcEEEEEeccc
Confidence 3333333 1 22234567999999999999999886 999999999999988544 4455554 78888888765
Q ss_pred H
Q psy10512 579 L 579 (629)
Q Consensus 579 ~ 579 (629)
.
T Consensus 152 ~ 152 (270)
T 3sop_A 152 T 152 (270)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-20 Score=185.41 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-PDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+++++|++. ++|+++| +++|++++|+||||||||||+++|+|++.|. +|.+.+.....++...
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~---------- 69 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK---------- 69 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC----------
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC----------
Confidence 455666543 5899999 8999999999999999999999999999887 8888765432111000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
... .+ +.. ..+|+.. ..| |++||+|
T Consensus 70 -------------------~~~----------~~--v~q-----------~~~gl~~-------~~l------~~~la~a 94 (261)
T 2eyu_A 70 -------------------HKK----------SI--VNQ-----------REVGEDT-------KSF------ADALRAA 94 (261)
T ss_dssp -------------------CSS----------SE--EEE-----------EEBTTTB-------SCH------HHHHHHH
T ss_pred -------------------Ccc----------ee--eeH-----------HHhCCCH-------HHH------HHHHHHH
Confidence 000 00 000 0234321 222 8999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
|..+|++||||||| |+++...+.+.. ..+.+||+++|+.+ +..+||++++|..
T Consensus 95 L~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 95 LREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 99999999999999 999987766654 45889999999988 5678999988753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-20 Score=185.37 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=100.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
+++++++++. .+|+++| +.+|++++|+||||||||||+++|+|+++|+ +|.|.+.+.. +.|+++...
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~--- 72 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKK--- 72 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSS---
T ss_pred CCChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcc---
Confidence 3456677642 2799999 8999999999999999999999999999998 9999876532 233332210
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
. + .. . ..+|+.. ..| |++||++|..+|++||||||| |+++..
T Consensus 73 ----~---~----v~--q---------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 73 ----S---I----VN--Q---------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp ----S---E----EE--E---------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred ----e---e----ee--H---------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 0 00 0 0234321 122 899999999999999999999 999987
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEE
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~ 588 (629)
.+.+.. ..+.+|+++||+.+ +..+|||++
T Consensus 115 ~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~ 143 (261)
T 2eyu_A 115 TALRAA-ETGHLVFGTLHTNT-AIDTIHRIV 143 (261)
T ss_dssp HHHHHH-HTTCEEEEEECCSS-HHHHHHHHH
T ss_pred HHHHHH-ccCCEEEEEeCcch-HHHHHHHHh
Confidence 776654 34778999999987 456677654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-19 Score=204.62 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=106.5
Q ss_pred CeEEEEEEEEEEcC---CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHH--------HcCCCCCccEEEECCceeE
Q psy10512 398 PVIMVQNVSFRYSD---DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--------YGDLTPSVGMVRKNSHLRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~~ 466 (629)
..|.+++...-+-. +...+++|++|++.+|++++|+||||||||||||+| +|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 34566655432211 123478999999999999999999999999999999 66555543221 1
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLL 544 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlL 544 (629)
+.+. .++.++|+.+. ....+|+|+.+++.+|+++ +.+|+||||
T Consensus 703 ~~~d-------------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 703 SIVD-------------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp ECCS-------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred hHHH-------------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 1110 11222333321 2346788888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH----HHHHhh-cCceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 545 DEPTNHLDMETIDAL----ADAIND-FEGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 545 DEPT~~LD~~~~~~l----~~~l~~-~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
||||+|||+.....+ .+.+.+ .+.++|++|||.++. .+||++..+.+|++.
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 999999999877665 333433 367899999997766 689999888888875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-19 Score=203.98 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=99.0
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc
Q psy10512 87 DVKIANFSITF-------HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y-------~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~ 159 (629)
.|.+++...-+ ++..+++|+||++++|++++|+||||||||||||+|+++....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 36666544322 2456889999999999999999999999999999997531100
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
+...+.+... ..+.. +..++..+|+. +...+..++||+|++|
T Consensus 701 --------------------q~g~~vpa~~--------~~i~~---------~d~i~~~ig~~-d~l~~~~stfs~em~~ 742 (918)
T 3thx_B 701 --------------------QIGSYVPAEE--------ATIGI---------VDGIFTRMGAA-DNIYKGRSTFMEELTD 742 (918)
T ss_dssp --------------------HHTCCBSSSE--------EEEEC---------CSEEEEEC-----------CCHHHHHHH
T ss_pred --------------------hcCccccchh--------hhhhH---------HHHHHHhCChH-HHHHHhHHHhhHHHHH
Confidence 0000000000 00000 01123344543 2345567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HH---Hh-hcCCEEEEEecCHHHHHhhccee
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLE-EE---LK-TYKRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~-~~---L~-~~~~tvIivsHd~~~l~~~~d~i 299 (629)
++.|+++ +.+|+||||||||+|||+.....+. .. |. +.+.|+|++|||++++ .+||+.
T Consensus 743 ~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 743 TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 9999999 8999999999999999998776654 33 32 2478999999998765 456543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=199.83 Aligned_cols=145 Identities=22% Similarity=0.217 Sum_probs=106.5
Q ss_pred eEEEEEEEEEEcC---CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-CCccEEEECCceeEEeeccchh
Q psy10512 399 VIMVQNVSFRYSD---DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-PSVGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 399 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~~~~~~q~~~ 474 (629)
.|.+++.. ++- +...+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.......+++++|.+
T Consensus 550 ~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~- 623 (765)
T 1ewq_A 550 RLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY- 623 (765)
T ss_dssp SEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE-
T ss_pred cEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh-
Confidence 46777763 321 223489999998 99999999999999999999999874 677875432223344443311
Q ss_pred cccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CC
Q psy10512 475 ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLLDEP---TN 549 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---T~ 549 (629)
..+++.+. ....+|+|+++++.+++++ +.+|++|||||| |+
T Consensus 624 ------------------------------~~~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 624 ------------------------------TRIGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ------------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred ------------------------------ccCCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 01111111 1124799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHhhcCceEEEEecCHHHHHhhc
Q psy10512 550 HLDMETI-DALADAINDFEGGLVLVSHDFRLINQVA 584 (629)
Q Consensus 550 ~LD~~~~-~~l~~~l~~~~~~vi~vsHd~~~~~~~~ 584 (629)
+||..+. ..+.+.|.+.+.++|++|||.+++. +|
T Consensus 670 ~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9999886 5788888887789999999998874 44
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-19 Score=177.78 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=102.5
Q ss_pred CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC-CceeEEeeccchhcccCCCCCHHHHHhh--c
Q psy10512 414 PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQHLHELLDLDISPLDYMLQ--S 490 (629)
Q Consensus 414 ~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~ 490 (629)
..+|+|+||++.+|+++||+||||||||||+++|+|++ |.+.++ ....+++++|.. +...++..++... .
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHHTT
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhhcc
Confidence 34899999999999999999999999999999999976 443222 122466777762 2334566554321 1
Q ss_pred ---CC--ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 491 ---FP--EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 491 ---~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+. .....+.+.+.|+.+. .. ...++..||+||+||+.+ ++++.+|+++|||||...+|.. +.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~L~~l~--~~-~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~ 152 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRTLKNIV--EG-KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD 152 (245)
T ss_dssp CCCTTSGGGBCHHHHHHHHHHHH--TT-CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT
T ss_pred CCCCCCcccccHHHHHHHHHHHH--CC-CCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH
Confidence 11 1122344556666542 22 234567999999999988 5888899999999998888764 222
Q ss_pred -cCceEEEEecC-HHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 566 -FEGGLVLVSHD-FRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 566 -~~~~vi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
.+.+|+++||+ ......+++.+ ++|. ++++..+.+
T Consensus 153 ~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 36789999997 55556666555 5563 455554443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-18 Score=201.39 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCC
Q psy10512 414 PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFP 492 (629)
Q Consensus 414 ~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 492 (629)
..|++|+||++.+|++++|+||||||||||||+|+++.... .|.........++.+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~----------------------- 716 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV----------------------- 716 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC-----------------------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH-----------------------
Confidence 34899999999999999999999999999999997642110 110000000000100
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhh----cC
Q psy10512 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA-DAIND----FE 567 (629)
Q Consensus 493 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~-~~l~~----~~ 567 (629)
..++.++|+.+... ...+++|+||+|++.|+++ +.+|+||||||||+|||+.....+. ..+.. .+
T Consensus 717 --------d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 717 --------DGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp --------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 01222344433322 3457899999999999999 8999999999999999998877765 44432 36
Q ss_pred ceEEEEecCHHHHHhhcC
Q psy10512 568 GGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 568 ~~vi~vsHd~~~~~~~~d 585 (629)
.++|++|||.+++ .+||
T Consensus 787 ~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 787 SLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp CEEEEECSCGGGG-GHHH
T ss_pred CeEEEEeCcHHHH-HHHh
Confidence 7899999998876 3454
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=163.35 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=43.4
Q ss_pred HHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHH----HHhhcCCEEEEEec----CHHHHH
Q psy10512 241 IALARALYV-------KPHLLLLDEPTNHLDLD-------A-----CVWLEE----ELKTYKRILVIISH----SQDFLN 293 (629)
Q Consensus 241 v~LAraL~~-------~P~iLLLDEPT~~LD~~-------~-----~~~l~~----~L~~~~~tvIivsH----d~~~l~ 293 (629)
+..+++++. +|++|+|||||++||+. . ...+.+ ..++.+.|||+||| +-..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~ 188 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILA 188 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhH
Confidence 455555544 99999999999999983 1 113333 33456899999999 555599
Q ss_pred hhcceeEEEcCC
Q psy10512 294 GVCTNIIHLDKR 305 (629)
Q Consensus 294 ~~~d~ii~l~~G 305 (629)
.+||++++|++|
T Consensus 189 ~~~d~~l~l~~~ 200 (231)
T 4a74_A 189 HSATLRVYLRKG 200 (231)
T ss_dssp -CCSEEEEEEEC
T ss_pred hhceEEEEEEec
Confidence 999999999875
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=163.91 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=83.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
.|++|++++|+||||||||||+++|+|++.|..|.....+. ..|+.... .... +.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~--~i~~~~~~------~~~~--------------~~i~~ 78 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGS--VIWIDTEN------TFRP--------------ERIRE 78 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCE--EEEEESSS------CCCH--------------HHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCE--EEEEECCC------CCCH--------------HHHHH
Confidence 68999999999999999999999999966653322111111 11111100 0000 11111
Q ss_pred HHHHcCCCCcc---cccCcCcCChhHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH------------HHHH
Q psy10512 503 IIGRYGLTGRQ---QVCPIRQLSDGQK-CRVVFAYLAWQ-------APHLLLLDEPTNHLDMET------------IDAL 559 (629)
Q Consensus 503 ~l~~~gl~~~~---~~~~~~~LSgGqk-qrv~lAral~~-------~p~lLlLDEPT~~LD~~~------------~~~l 559 (629)
+...+++.... .-.....++++++ +.+..+..++. +|++|+|||||++||+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 79 IAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp HHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHH
Confidence 22222221100 0001123444443 33555555554 999999999999999841 1234
Q ss_pred HHHH----hhcCceEEEEec----CHHHHHhhcCEEEEEeCC
Q psy10512 560 ADAI----NDFEGGLVLVSH----DFRLINQVAEEIWICENG 593 (629)
Q Consensus 560 ~~~l----~~~~~~vi~vsH----d~~~~~~~~d~i~~l~~G 593 (629)
++.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 4433 345789999999 555599999999999875
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-20 Score=175.79 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecc-cCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHH
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR-EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (629)
|++++|+||||||||||+++|+|++. ++| +.+.+... ..... ...+..+. + . .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~-~~~ig~~~------------------~-~-~--- 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQG-GRRIGFDV------------------V-T-L--- 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETT-SSEEEEEE------------------E-E-T---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhh-hceEEEEE------------------E-e-c---
Confidence 78999999999999999999999987 788 76643221 00000 00000000 0 0 0
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhCCCCc------hhhhcccCCCChHHHHHH-HHHH---HHccCCCEEEEeC--C
Q psy10512 192 QLMDIYDRLDDISADTAEARAANILHGLGFTK------EMQQKKTKDFSGGWRMRI-ALAR---ALYVKPHLLLLDE--P 259 (629)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~------~~~~~~~~~LSGGqrqRv-~LAr---aL~~~P~iLLLDE--P 259 (629)
.... ..+..+++.. ....++...+|||||+++ +|++ |++.+|+|||||| |
T Consensus 55 -----~g~~-------------~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~ 116 (189)
T 2i3b_A 55 -----SGTR-------------GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK 116 (189)
T ss_dssp -----TSCE-------------EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCST
T ss_pred -----ccce-------------ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCc
Confidence 0000 0011122211 123445667999999998 4455 6899999999999 9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEE---EEecCHHHHHhhcceeEEEcCCeEEEEc-CcHHHH
Q psy10512 260 TNHLDLDACVWLEEELKTYKRILV---IISHSQDFLNGVCTNIIHLDKRKLKYYG-GNYEAF 317 (629)
Q Consensus 260 T~~LD~~~~~~l~~~L~~~~~tvI---ivsHd~~~l~~~~d~ii~l~~G~i~~~~-g~~~~~ 317 (629)
|+.+|+.....|.++|..+..+|| .||||.+ ..++|+|..+.+|+|+... .|.+..
T Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~~~nr~~~ 176 (189)
T 2i3b_A 117 MELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVTKENRNHL 176 (189)
T ss_dssp TTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECCSSSGGGH
T ss_pred cccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeChHhHHHH
Confidence 999999999999999987655453 4559973 2344555556777777644 344433
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=165.46 Aligned_cols=167 Identities=14% Similarity=0.048 Sum_probs=104.8
Q ss_pred eeeeEeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTML-ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.+.+... +.. .. .+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~--~~~--------------~~--~~~~~~ 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT--EES--------------RD--SIIRQA 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES--SSC--------------HH--HHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc--ccC--------------HH--HHHHHH
Confidence 456888887 89999999999999999999999999877666666654321 110 00 000000
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEE
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLL 256 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLL 256 (629)
..+... ...... ..+..++.. ...++ . .. .....|.++.++...+.+...+|+ +||+
T Consensus 71 ~~~~~~-~~~~~~------~~~~~~~~~---------~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llil 129 (235)
T 2w0m_A 71 KQFNWD-FEEYIE------KKLIIIDAL---------MKEKE-D-QW---SLVNLTPEELVNKVIEAKQKLGYGKARLVI 129 (235)
T ss_dssp HHTTCC-CGGGBT------TTEEEEECC---------C-----C-TT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHhcch-HHHHhh------CCEEEEecc---------ccccC-c-ee---eecCCCHHHHHHHHHHHHHhhCCCceEEEE
Confidence 011100 000000 000000000 00001 0 01 123459999999888888888999 9999
Q ss_pred eCCCCCC--CHHHHHHHHHHHh----hcCCEEEEEecCH--------HHHHhhcceeEEEcCC
Q psy10512 257 DEPTNHL--DLDACVWLEEELK----TYKRILVIISHSQ--------DFLNGVCTNIIHLDKR 305 (629)
Q Consensus 257 DEPT~~L--D~~~~~~l~~~L~----~~~~tvIivsHd~--------~~l~~~~d~ii~l~~G 305 (629)
||||+.+ |+.....+.+.|+ +.+.|||++||+. ..+..+||+|++|+..
T Consensus 130 De~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 130 DSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred ECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999888 9877777766654 4578999999999 4588999999999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-18 Score=170.74 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=86.1
Q ss_pred CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE-------EeecccCCCCCcchhhhhhhchHH
Q psy10512 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI-------FHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 98 ~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i-------~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.+ ....++..... .
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~---------l--- 73 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKV---------L--- 73 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCC---------C---
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccc---------c---
Confidence 5677999999999999999999999999999999999964 33211 11111100000 0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC--hhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS--ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
+..++.........+. .......+.+.|+.+. .....++..||+||+||+++ ++++
T Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~ 131 (245)
T 2jeo_A 74 ------------------TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVV 131 (245)
T ss_dssp ------------------CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEE
T ss_pred ------------------CHhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEe
Confidence 0000000000000010 0001123344444331 23456788999999999988 6888
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCH-HHHHhhcceeEEEcCC
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQ-DFLNGVCTNIIHLDKR 305 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~-~~l~~~~d~ii~l~~G 305 (629)
.+|+++|||||...+|.. +.+ ..+.+|+++||+. .....+++++ ++|
T Consensus 132 ~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 132 YPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 999999999999888864 211 1377999999974 4445555555 555
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=192.81 Aligned_cols=145 Identities=21% Similarity=0.141 Sum_probs=102.5
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITF---HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y---~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
.|.+++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+. +. ....+.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--------pa-~~~~i~ 617 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--------PA-EEAHLP 617 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--------SS-SEEEEC
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--------eh-hcccee
Confidence 47777764323 345689999999 99999999999999999999999753 4445421 00 000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.. + . ++..++..+. ....+|+|+++++.
T Consensus 618 --------------------~v-~------------~---------------i~~~~~~~d~----l~~g~S~~~~e~~~ 645 (765)
T 1ewq_A 618 --------------------LF-D------------G---------------IYTRIGASDD----LAGGKSTFMVEMEE 645 (765)
T ss_dssp --------------------CC-S------------E---------------EEEECCC----------CCSHHHHHHHH
T ss_pred --------------------eH-H------------H---------------hhccCCHHHH----HHhcccHHHHHHHH
Confidence 00 0 0 0111222211 12358999999999
Q ss_pred HHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHhhcCCEEEEEecCHHHHHhhc
Q psy10512 243 LARAL--YVKPHLLLLDEP---TNHLDLDACV-WLEEELKTYKRILVIISHSQDFLNGVC 296 (629)
Q Consensus 243 LAraL--~~~P~iLLLDEP---T~~LD~~~~~-~l~~~L~~~~~tvIivsHd~~~l~~~~ 296 (629)
+|++| +.+|++|||||| |++||..+.. .+.+.|.+.+.|+|++|||.++.. +|
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99999 999999999999 9999998874 688888877899999999998864 44
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=162.25 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=103.5
Q ss_pred EeeeeeE-EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeE-EeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 416 IYRNLEF-GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 416 il~~vsl-~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.|+++.+ .+++|++++|+||||||||||++.|++...+..|.|.+.+.... ..+..... .+.... ... ... .
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~--~ 84 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAK-QFNWDF--EEY-IEK--K 84 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHH-HTTCCC--GGG-BTT--T
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHH-HhcchH--HHH-hhC--C
Confidence 5788887 89999999999999999999999999988887777754321000 00000000 000000 000 000 0
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHHhh----
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHL--DMETIDALADAIND---- 565 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~L--D~~~~~~l~~~l~~---- 565 (629)
... +......++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 85 ~~~---~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~ 156 (235)
T 2w0m_A 85 LII---IDALMKEKE-DQ----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK 156 (235)
T ss_dssp EEE---EECCC-----CT----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEE---EeccccccC-ce----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh
Confidence 000 000000001 00 0113459999999888888888999 99999999888 98887777777654
Q ss_pred cCceEEEEecCH--------HHHHhhcCEEEEEeCC
Q psy10512 566 FEGGLVLVSHDF--------RLINQVAEEIWICENG 593 (629)
Q Consensus 566 ~~~~vi~vsHd~--------~~~~~~~d~i~~l~~G 593 (629)
.+.+||++||+. ..+..+||+|++|+..
T Consensus 157 ~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 157 WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 467999999999 5588999999999854
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=151.32 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=77.2
Q ss_pred hhcccCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhccee
Q psy10512 226 QQKKTKDFSGGWRMRIALARALYV----KPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LAraL~~----~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~i 299 (629)
..+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|+++ +.++|+|||+...+ .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 456688999999999999999974 46999999999999999999999999876 46899999997654 689999
Q ss_pred EE--EcCCeEEEEcCcHHHHHH
Q psy10512 300 IH--LDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 300 i~--l~~G~i~~~~g~~~~~~~ 319 (629)
+. +.+|.......+.+.+.+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHH
Confidence 84 457876666666665443
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-19 Score=174.53 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=106.0
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcC--CChhhHHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMR 501 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 501 (629)
.++|+++||+||||||||||+++|+|++.| .+++++|+.........++.+.....+ +.....+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 568999999999999999999999999876 356666654321112345544432222 2223456678
Q ss_pred HHHHHcCCCCcccccCcCcCChhH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhhc----
Q psy10512 502 KIIGRYGLTGRQQVCPIRQLSDGQ----KCRVVFAYLAWQAPHLLLLDEPTNH-------LDMETIDALADAINDF---- 566 (629)
Q Consensus 502 ~~l~~~gl~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPT~~-------LD~~~~~~l~~~l~~~---- 566 (629)
++++.+++.... ..|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~-~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPV-EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCE-EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCc-CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 888888887654 45788999996 4788999999999999999999999 9998888888777653
Q ss_pred CceEEEEecCH
Q psy10512 567 EGGLVLVSHDF 577 (629)
Q Consensus 567 ~~~vi~vsHd~ 577 (629)
+.++++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 66888899984
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-18 Score=177.01 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=80.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC-cchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHH
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD-KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (629)
.++||||||||||||+++|+|+..|++|++.+.+.. ++... ...+..+.+.. ......+..++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~--i~~~~~~~~i~~v~q~~-------------~~~~~ltv~d~- 67 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK--IPKTVEIKAIGHVIEEG-------------GVKMKLTVIDT- 67 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-----------------CCEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc--cCcceeeeeeEEEeecC-------------CCcCCceEEec-
Confidence 489999999999999999999999999988775432 11110 01111111100 00000000000
Q ss_pred HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10512 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273 (629)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~ 273 (629)
..+..... .....+.+.+++. ....+..+.+|||||+|||+||||++. +++|||||++||+.... ++.
T Consensus 68 ~~~g~~~~---~~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~ 135 (270)
T 3sop_A 68 PGFGDQIN---NENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMK 135 (270)
T ss_dssp CC--CCSB---CTTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHH
T ss_pred hhhhhhcc---cHHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHH
Confidence 00000000 0111122333333 244566788999999999999999986 99999999999998854 444
Q ss_pred HHhhcCCEEEEEecCHHH
Q psy10512 274 ELKTYKRILVIISHSQDF 291 (629)
Q Consensus 274 ~L~~~~~tvIivsHd~~~ 291 (629)
.|.+. .+||+|.|..+.
T Consensus 136 ~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 136 HLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHTT-SEEEEEETTGGG
T ss_pred HHHhc-CcEEEEEecccc
Confidence 55555 888888887543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=143.98 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=77.9
Q ss_pred cCcCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAWQ----APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWI 589 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~~----~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~ 589 (629)
+++..||||||||++||++|+. +|+++||||||++||+.+...+.+.|.++ ..++|+|||+...+ .+||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4678999999999999999974 56999999999999999999999999876 35799999998765 68999986
Q ss_pred E--eCCEEEEecCCHHHHHHHH
Q psy10512 590 C--ENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 590 l--~~G~i~~~~g~~~~~~~~~ 609 (629)
+ .+|.......+..++.+.+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHHH
Confidence 5 5787665667777766544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-17 Score=158.56 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=97.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC-----CCCccEEEECC------ceeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL-----TPSVGMVRKNS------HLRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~------~~~~~ 467 (629)
+|+++|++|.|+ .. ++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+ ...+.
T Consensus 3 ~l~~~~~~~~~~--~~-~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMS--AP-DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEE--ES-SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheee--cC-CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 578999999996 23 6777 889999999999999999999999999998 88888765321 11110
Q ss_pred eeccchhcccCCCC-----CHH-HHHhh-------------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 468 RYHQHLHELLDLDI-----SPL-DYMLQ-------------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 468 ~~~q~~~~~~~~~~-----~~~-~~~~~-------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..+........... ... .++.. ..+.......+..++...++.......++..+|+||+||
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 00000000000000 000 11100 001112233466677778886543344678899999999
Q ss_pred -HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 529 -VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 529 -v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
+..+++++.+|.++++|||||++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999988764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-17 Score=159.81 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=98.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCCceEEEe---ecccCCCCCc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE-----VPVPDHIDIFH---LTREMPASDK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~-----~p~~g~i~i~~---~~~~~~~~~~ 158 (629)
.|+++|++|.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|++|...+.. ........+.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 388999999997 467877 999999999999999999999999999987 67777654211 0000000000
Q ss_pred chhh--hhh-hc-hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 159 SALT--CVM-EV-DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 159 ~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
.... ... .. ...+..+....+..... +.. .+...+. .........+..++...+++.-....++..+|
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSL-QGL------VVLMDIR-HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTE-EEE------EEEEETT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcc-cEE------EEEEECC-CCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0000 000 00 00000111111100000 000 0000000 00112233455667777876433355688899
Q ss_pred hHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 235 GGWRMR-IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY 278 (629)
Q Consensus 235 GGqrqR-v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~ 278 (629)
+||+|| +.++++++.+|.++++|||||+||..++..+++.|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999999 89999999999999999999999999999999888654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-17 Score=172.77 Aligned_cols=145 Identities=16% Similarity=0.126 Sum_probs=96.6
Q ss_pred EEEEEEEcCCCCeEeeeeeE-------EEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchh
Q psy10512 403 QNVSFRYSDDGPWIYRNLEF-------GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl-------~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~ 474 (629)
..++++|.+...+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|...... +.+....
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~-~e~~~~~-- 168 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP-IEFVHES-- 168 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCC--
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc-HHhhhhc--
Confidence 56677764433345666665 67889999999999999999999999999997 5665432110 0000000
Q ss_pred cccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 475 ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~ 554 (629)
... + ... . ..+ ...++-.+ +||+||.++|++||||||| |.+
T Consensus 169 -----~~~---~----v~q--~---------~~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 169 -----KKC---L----VNQ--R---------EVH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp -----SSS---E----EEE--E---------EBT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred -----ccc---c----eee--e---------eec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 000 0 000 0 000 01122222 9999999999999999999 888
Q ss_pred HHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 555 ~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
+.+.+.++.. .+.+||+++|+.+.+ ..|||++.|.
T Consensus 210 ~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 210 TIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 8777776643 377899999999988 6788887663
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-18 Score=179.90 Aligned_cols=163 Identities=20% Similarity=0.132 Sum_probs=72.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCCceEEEeecccCCCC-Ccchhhhhhhch
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTREMPAS-DKSALTCVMEVD 168 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~-~~p~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~ 168 (629)
.||+++|+++.++++++|+| +||||||+|||||+++|.|. ..|..| +.+.+. .+... .........+..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~--~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE--KIERTVQIEASTVEIEER 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC--
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc--ccCCcceEeeEEEEecCC
Confidence 58899999999999999998 99999999999999999997 667666 433211 10000 000000000000
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
. ....+... ++... ...... .+.....+..+. +..++++.++|||+|||+.+|||++
T Consensus 73 ~-------~~~~ltv~--Dt~g~-----~~~~~~--~e~~~~l~~~l~-------~~~~~~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 73 G-------VKLRLTVV--DTPGY-----GDAINC--RDCFKTIISYID-------EQFERYLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp --------CCEEEEEE--EEC------------------CTTHHHHHH-------HHHHHHHHHHTSSCCTTCCCCCCCE
T ss_pred C-------cccCcchh--hhhhh-----hhhcCc--HHHHHHHHHHHH-------HHHHHHHHHhCHHhhhhhhhhhhhh
Confidence 0 00000000 00000 000000 000000111111 2335678899999999999999986
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHhh-cCCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTNH-LDLDACVWLEEELKT-YKRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~~-LD~~~~~~l~~~L~~-~~~tvIivsHd~~ 290 (629)
+|++||||++ ||+.... ++..+.. .+.++|+++||+.
T Consensus 130 ----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred ----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 9999999986 9998853 3333433 3567888889973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-18 Score=175.75 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=74.1
Q ss_pred EEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC-CCCCccEEEECCc--------eeEEeeccch
Q psy10512 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD-LTPSVGMVRKNSH--------LRFARYHQHL 473 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~--------~~~~~~~q~~ 473 (629)
+||++.|+. ..++++++|+| +|+||||||||||++.|+|. +.|++| |...+. ..+++..|..
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 478899953 34899999998 99999999999999999998 889988 543321 1123333321
Q ss_pred hcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC-CC
Q psy10512 474 HELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH-LD 552 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~-LD 552 (629)
. ....+++++........ ...+....++..+ .. ....++.++|||||||+.+||+++ +|++||||++ ||
T Consensus 73 ~--~~~~ltv~Dt~g~~~~~-~~~e~~~~l~~~l--~~-~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 73 G--VKLRLTVVDTPGYGDAI-NCRDCFKTIISYI--DE-QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp ---CCEEEEEEEEC------------CTTHHHHH--HH-HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred C--cccCcchhhhhhhhhhc-CcHHHHHHHHHHH--HH-HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 1 11112222221110000 0000111111111 11 112456799999999999999886 9999999985 99
Q ss_pred HHHHHHHHHHHhh-cCceEEEEecCHH
Q psy10512 553 METIDALADAIND-FEGGLVLVSHDFR 578 (629)
Q Consensus 553 ~~~~~~l~~~l~~-~~~~vi~vsHd~~ 578 (629)
+...+ ++..+.. .+.++|+++||+.
T Consensus 143 ~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 98853 3333333 2457888899973
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-17 Score=170.26 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=94.7
Q ss_pred EeEEEEeC--CeeeeEeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-CceEEEeecccCCCCCcch
Q psy10512 91 ANFSITFH--GCELLQDTML-------ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-DHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 91 ~nls~~y~--~~~~L~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~-g~i~i~~~~~~~~~~~~~~ 160 (629)
.+++++|- ..+.|+++.+ .+.+|++++|+|||||||||||++|+|++.|.. |.+.......+.......
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~- 170 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK- 170 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-
Confidence 45555652 2234566665 677888999999999999999999999988763 444322111111000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
..+... .++ ...++-.+
T Consensus 171 -------------------------------------~~v~q~--------------~~~---------~~~~~~~~--- 187 (356)
T 3jvv_A 171 -------------------------------------CLVNQR--------------EVH---------RDTLGFSE--- 187 (356)
T ss_dssp -------------------------------------SEEEEE--------------EBT---------TTBSCHHH---
T ss_pred -------------------------------------cceeee--------------eec---------cccCCHHH---
Confidence 000000 000 00122222
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
+||+||.++|++||||||| |.++...+.+.. ..|.+||+++|+.+.+ .+|||++.|..
T Consensus 188 -~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 188 -ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp -HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred -HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 9999999999999999999 888877766654 4488999999999988 68999998854
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-16 Score=157.88 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHH----hhcCCEE
Q psy10512 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN--HLDLDA---CVWLEEEL----KTYKRIL 282 (629)
Q Consensus 212 ~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~--~LD~~~---~~~l~~~L----~~~~~tv 282 (629)
+..+++.+++. +..++++..||+|+.+++ ++++.+|++|||||||+ ++|... ...++..| ++.+.||
T Consensus 99 ~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 44566777775 345778999999997765 68888999999999999 999743 24444444 4558999
Q ss_pred EEEecCHHHHH
Q psy10512 283 VIISHSQDFLN 293 (629)
Q Consensus 283 IivsHd~~~l~ 293 (629)
|+|+|+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-16 Score=182.51 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=90.9
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.........++++.|.
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i--------------------- 653 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI--------------------- 653 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE---------------------
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH---------------------
Confidence 489999999 99999999999999999999999997432 2232110111112222221
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHhh-cCc
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA----LADAIND-FEG 568 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~----l~~~l~~-~~~ 568 (629)
+..++..+... ...+.+|+|+++ ++.+...+.+|++|||||||+|+|+..... +++.+.+ .+.
T Consensus 654 ----------~~~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 654 ----------FTRVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ----------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred ----------HhhCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 01111111111 123457777764 444555689999999999988888754433 4444555 367
Q ss_pred eEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 569 GLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 569 ~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++|++|||.+++ .+||++..+.+|++
T Consensus 722 ~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 722 LTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp EEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred eEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 899999999876 48887655555443
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-16 Score=182.69 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=92.5
Q ss_pred CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHH
Q psy10512 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 98 ~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (629)
++..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|. .++.. ...+
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--------~vpa~-~~~i--------------- 647 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--------YVPAQ-KVEI--------------- 647 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--------CBSSS-EEEE---------------
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--------ccchh-cccc---------------
Confidence 445689999999 99999999999999999999999986321 1111 00000 0000
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEE
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLL 256 (629)
... + . ++..+|..+ ......+++|+++++ ++.+..++.+|++|||
T Consensus 648 -----~~~-~------------~---------------i~~~~~~~d-~l~~~~stf~~e~~~-~~~il~~a~~psLlLL 692 (800)
T 1wb9_A 648 -----GPI-D------------R---------------IFTRVGAAD-DLASGRSTFMVEMTE-TANILHNATEYSLVLM 692 (800)
T ss_dssp -----CCC-C------------E---------------EEEEEC------------CHHHHHH-HHHHHHHCCTTEEEEE
T ss_pred -----eeH-H------------H---------------HHhhCCHHH-HHHhhhhhhhHHHHH-HHHHHHhccCCCEEEE
Confidence 000 0 0 001111111 112224567877765 4444556899999999
Q ss_pred eCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 257 DEPTNHLDLDACV----WLEEELKT-YKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 257 DEPT~~LD~~~~~----~l~~~L~~-~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
||||+|+|+.... .+.+.|.+ .+.++|++|||.++. .+||++..+.++++.
T Consensus 693 DEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred ECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 9997777765433 34555555 488999999999876 489988767666554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=144.96 Aligned_cols=76 Identities=18% Similarity=0.080 Sum_probs=57.4
Q ss_pred cCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHH----HHHHhhcCCEEEEEecCHH----
Q psy10512 230 TKDFSGGW--RMRIALARALYVK-PHLLLLDEPTNHLDLDA--------CVWL----EEELKTYKRILVIISHSQD---- 290 (629)
Q Consensus 230 ~~~LSGGq--rqRv~LAraL~~~-P~iLLLDEPT~~LD~~~--------~~~l----~~~L~~~~~tvIivsHd~~---- 290 (629)
+..+|+++ +++++.+++++.+ |++||+||||+.||+.. ...+ .++.++.+.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34556664 5688888899986 99999999999999732 2333 3333455889999999865
Q ss_pred ---------HHHhhcceeEEEcCC
Q psy10512 291 ---------FLNGVCTNIIHLDKR 305 (629)
Q Consensus 291 ---------~l~~~~d~ii~l~~G 305 (629)
.+..+||.+++|+..
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CccccCCCcceeecCcEEEEEEEe
Confidence 678899999999754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=167.29 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=70.3
Q ss_pred cccCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 228 KKTKDF-SGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 228 ~~~~~L-SGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999988765 689999999999876 69999999
Q ss_pred cCC
Q psy10512 303 DKR 305 (629)
Q Consensus 303 ~~G 305 (629)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=153.30 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=92.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC----ceeEEeeccchhcccCCCCCHHH---HHh-hcCCCh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS----HLRFARYHQHLHELLDLDISPLD---YML-QSFPEV 494 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~---~~~-~~~~~~ 494 (629)
.+.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+... .+... .+. ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e--------~~~~~~~~r~~~~g~~-- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAE--------DPPTAIHHRLHALGAH-- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESS--------SCHHHHHHHHHHHHTT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECC--------CCHHHHHHHHHHHHhh--
Confidence 478999999999999999999999998664 34432210 1123333211 11111 111 1111
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHh----h
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN--HLDMETI---DALADAIN----D 565 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~--~LD~~~~---~~l~~~l~----~ 565 (629)
........+++.+++.... ..++..||+||.+++ ++++.+|++||+||||+ ++|.... ..++..|. +
T Consensus 94 ~~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp SCHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 1233456678888886543 456789999997765 57888999999999999 9997433 55555554 3
Q ss_pred cCceEEEEecCHHHHH
Q psy10512 566 FEGGLVLVSHDFRLIN 581 (629)
Q Consensus 566 ~~~~vi~vsHd~~~~~ 581 (629)
.+.+||++||+.....
T Consensus 170 ~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAA 185 (279)
T ss_dssp HCCEEEEEEEC-----
T ss_pred cCCEEEEEecCCCccc
Confidence 4679999999987763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=142.55 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=92.8
Q ss_pred EeeeeeE-EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCCh
Q psy10512 416 IYRNLEF-GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEV 494 (629)
Q Consensus 416 il~~vsl-~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 494 (629)
.|+.+.. .+++|++++|+||||||||||++.|++ .+ .+.+. |+... ...+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~--------~i~~~------~~~~~~---------- 60 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVA--------YVDTE------GGFSPE---------- 60 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEE--------EEESS------CCCCHH----------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEE--------EEECC------CCCCHH----------
Confidence 4566554 689999999999999999999999999 22 22222 22111 001111
Q ss_pred hhHHHHHHHHHHcCCCCc--ccccCcCcCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHHHH
Q psy10512 495 KDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQ--KCRVVFAYLAWQA-PHLLLLDEPTNHLDMET--------IDALAD 561 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPT~~LD~~~--------~~~l~~ 561 (629)
++..++..+++... .....+..+|+++ ++++..+++++.+ |++||+||||+.+|... ...+.+
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 61 ----RLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp ----HHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ----HHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 11111222222100 0001223456664 5678888899986 99999999999999732 233333
Q ss_pred HH----hhcCceEEEEecCHH-------------HHHhhcCEEEEEeCC
Q psy10512 562 AI----NDFEGGLVLVSHDFR-------------LINQVAEEIWICENG 593 (629)
Q Consensus 562 ~l----~~~~~~vi~vsHd~~-------------~~~~~~d~i~~l~~G 593 (629)
.| ++.+.+||+++|... .+..+||.+++|+..
T Consensus 137 ~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 33 445778999999865 677899999999754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-18 Score=165.16 Aligned_cols=145 Identities=19% Similarity=0.081 Sum_probs=94.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhH
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES 189 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (629)
.++|+++||+||||||||||+++|+|++.| .+.+ ..++........ ... .. .....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~--v~~d~~~~~~~~------~~~-~~-------~~~~~----- 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVAL--LPMDHYYKDLGH------LPL-EE-------RLRVN----- 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEE--EEGGGCBCCCTT------SCH-HH-------HHHSC-----
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEE--EecCccccCccc------ccH-HH-------hcCCC-----
Confidence 578999999999999999999999998654 2322 222211110000 000 00 00000
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC---
Q psy10512 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW----RMRIALARALYVKPHLLLLDEPTNH--- 262 (629)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq----rqRv~LAraL~~~P~iLLLDEPT~~--- 262 (629)
+. ........++.++++.+++.. ..++++.++|+|+ +||+++|++++.+|.+|++||||++
T Consensus 59 -------~~----~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d 126 (211)
T 3asz_A 59 -------YD----HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMD 126 (211)
T ss_dssp -------TT----SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCS
T ss_pred -------CC----ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcC
Confidence 00 000111234556666666653 3566789999996 4788999999999999999999999
Q ss_pred ----CCHHHHHHHHHHHhh----cCCEEEEEecCHH
Q psy10512 263 ----LDLDACVWLEEELKT----YKRILVIISHSQD 290 (629)
Q Consensus 263 ----LD~~~~~~l~~~L~~----~~~tvIivsHd~~ 290 (629)
||+.....+.+.+.+ .+.|+++++|+..
T Consensus 127 ~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 899888777776654 3789999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-16 Score=160.65 Aligned_cols=139 Identities=14% Similarity=0.006 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCCCCHHHHHh
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLDISPLDYML 488 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~~~ 488 (629)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+++++|... .....++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 689999999999999999999999999999999886531 1233333221 011111122211
Q ss_pred hcCCChhhHHHHH-HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 489 QSFPEVKDREEMR-KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 489 ~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
... ..... .+++..|..+. ....++..++||++|||+++.+|+ +|.|| |+++.+.. ..+...-..
T Consensus 179 ~~~-----~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~ 246 (304)
T 1rj9_A 179 AMK-----ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEA 246 (304)
T ss_dssp HHH-----HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHH
T ss_pred HHH-----hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHH
Confidence 000 00000 01122233221 112345555899999999999999 67777 66665432 233333334
Q ss_pred cCceEEEEecCHH
Q psy10512 566 FEGGLVLVSHDFR 578 (629)
Q Consensus 566 ~~~~vi~vsHd~~ 578 (629)
.+.++|++||+..
T Consensus 247 ~~~t~iivTh~d~ 259 (304)
T 1rj9_A 247 VGLTGVIVTKLDG 259 (304)
T ss_dssp HCCSEEEEECTTS
T ss_pred cCCcEEEEECCcc
Confidence 5789999999853
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-16 Score=178.52 Aligned_cols=170 Identities=16% Similarity=0.253 Sum_probs=88.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeee----------eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCce--
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNL----------EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSHL-- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~v----------sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~-- 464 (629)
+.+.++||++.|+.....+++.+ +|+++. +||+|||||||||||++|+|+..| ++|.|.+.+..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46789999999963221234333 355553 999999999999999999999989 79999877632
Q ss_pred ------------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 465 ------------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 465 ------------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
.++|++|... +....++. +.+......++.... .+| ++++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~-------------e~i~~~~~~~~~~~~-------~~s---~~~i~l~ 140 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVE-------------KEINKAQNAIAGEGM-------GIS---HELITLE 140 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHH-------------TTHHHHHHHHHCSSS-------CCC---SCCEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHH-------------HHHHHHHHHhcCCcc-------ccc---hHHHHHH
Confidence 2333333321 11111111 112222222222111 011 1122233
Q ss_pred HHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CceEEEEecCHHHH--------Hhh----cCEEEE
Q psy10512 533 YLAWQAPHLLLLDEP------TNHLDMETIDALADAINDF-----EGGLVLVSHDFRLI--------NQV----AEEIWI 589 (629)
Q Consensus 533 ral~~~p~lLlLDEP------T~~LD~~~~~~l~~~l~~~-----~~~vi~vsHd~~~~--------~~~----~d~i~~ 589 (629)
.+....|+++|+||| |++||+.....+.+++.++ ..+++++|||.+.+ ..+ +..|.|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 334458999999999 9999999999999999885 23578899997633 333 245777
Q ss_pred EeCCEE
Q psy10512 590 CENGKV 595 (629)
Q Consensus 590 l~~G~i 595 (629)
+.++.+
T Consensus 221 lTK~Dl 226 (608)
T 3szr_A 221 LTKPDL 226 (608)
T ss_dssp EECGGG
T ss_pred ecchhh
Confidence 776543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-15 Score=156.52 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=88.1
Q ss_pred eeeEee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCC----Cc-eEEEeecccCCCCCcchhhhhhhchHHHH
Q psy10512 101 ELLQDT-MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVP----DH-IDIFHLTREMPASDKSALTCVMEVDEERV 172 (629)
Q Consensus 101 ~~L~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~----g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (629)
+.|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. |. +.+.. .+. . . +.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~--e~~-~------------~--~~ 180 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT--ENT-F------------R--PE 180 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES--SSC-C------------C--HH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC--CCC-C------------C--HH
Confidence 456665 6899999999999999999999999999987 5555 33 33321 110 0 0 01
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc----
Q psy10512 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY---- 248 (629)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---- 248 (629)
.+..+.+.... +.. . +++.+-+. . . .-|++++|++.++++++
T Consensus 181 ~i~~i~q~~~~--~~~------~-------------------v~~ni~~~----~-~--~~~~~~~~~l~~~~~~~~~lS 226 (349)
T 1pzn_A 181 RIREIAQNRGL--DPD------E-------------------VLKHIYVA----R-A--FNSNHQMLLVQQAEDKIKELL 226 (349)
T ss_dssp HHHHHHHTTTC--CHH------H-------------------HGGGEEEE----E-C--CSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCC--CHH------H-------------------HhhCEEEE----e-c--CChHHHHHHHHHHHHHHHHhc
Confidence 11111111100 000 1 11111110 0 0 11467788888888887
Q ss_pred ---cCCCEEEEeCCCCCCCHHH------------HHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 249 ---VKPHLLLLDEPTNHLDLDA------------CVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 249 ---~~P~iLLLDEPT~~LD~~~------------~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
.+|++||+||||++||+.. ...+...| ++++.|||+++|+......+++..+....|++..
T Consensus 227 ~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 227 NTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp SSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred cccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence 6899999999999999852 23444333 3458899999999876655445555666666553
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-15 Score=156.15 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=88.9
Q ss_pred Eeeee-eEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CCCc----cE-EEECCceeEEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNL-EFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TPSV----GM-VRKNSHLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~v-sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+. |. |++++...+ .++. +.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~-----------i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPER-----------IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHH-----------HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHH-----------HHHH
Confidence 35555 6889999999999999999999999999998 7776 46 555432110 0000 0111
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH-----
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW-------QAPHLLLLDEPTNHLDMET----- 555 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPT~~LD~~~----- 555 (629)
...+.- . .. .+++.+-+. .. .-|+++.|++.++++++ .+|++||+||||++||+..
T Consensus 186 ~q~~~~-~-~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~ 253 (349)
T 1pzn_A 186 AQNRGL-D-PD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGA 253 (349)
T ss_dssp HHTTTC-C-HH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTT
T ss_pred HHHcCC-C-HH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccccc
Confidence 111100 0 01 222222110 01 12578889999998888 6899999999999999862
Q ss_pred -------HHHHHHHHh----hcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 556 -------IDALADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 556 -------~~~l~~~l~----~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
...++..|. +++.+||+++|+...+..+++...+...|+
T Consensus 254 ~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 254 LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 334444443 347799999998776544333333444444
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-15 Score=163.19 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=87.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE--EEECC-----ceeEEeec
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM--VRKNS-----HLRFARYH 470 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~--i~~~~-----~~~~~~~~ 470 (629)
.+|.++||++.|+. . .+++++||+| +|+|+||||||||+++|+|...|..|. +.... ...++++.
T Consensus 10 ~~l~~~~l~~~y~~-~-~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYR-K-SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTT-T-TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECC-E-EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 46899999999963 3 4899999997 999999999999999999998865541 11111 11244444
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC---EEEEeCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEP 547 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEP 547 (629)
|... ....+++++........ ........+.+.+ . ..++.+++||++|||+++.+|+ +|++|||
T Consensus 82 q~~~--~~~~Ltv~Dt~g~~~~~-~~~~~~~~i~~~i------~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 82 KEGG--VQLLLTIVDTPGFGDAV-DNSNCWQPVIDYI------D----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp -------CEEEEEEECC------------CHHHHHHH------H----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred ecCC--cccceeeeechhhhhhc-cchhhHHHHHHHH------H----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 4321 11122222221111000 0000011111111 0 1456677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHhhcCceEEEEecCHHH
Q psy10512 548 T-NHLDMETIDALADAINDFEGGLVLVSHDFRL 579 (629)
Q Consensus 548 T-~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~ 579 (629)
| ++||+.....+ +.|.. +..||+|.|-.+.
T Consensus 149 t~~~L~~~d~~~l-k~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDIEFM-KRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHHHHH-HHHTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHHHHH-HHHhc-cCcEEEEEEcccC
Confidence 9 69999875443 44443 5677777775543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-15 Score=159.96 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=86.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCc--eEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH--IDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~--i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|.++||+++|+++.+++++||+| +||||||||||||+++|+|...|.+|. +.+... .......+..+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~----~t~~~~~i~~v 80 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK----KTVQVEQSKVL 80 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------CCEEEEEECC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCc----cceeeeeEEEE
Confidence 589999999999999999999998 999999999999999999998765542 111000 00000000000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+.. . ....+....... . .... ........+.+.+. ..++.+.+||++||
T Consensus 81 ~q~~----~---~~~~Ltv~Dt~g-~------~~~~---~~~~~~~~i~~~i~-------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 81 IKEG----G---VQLLLTIVDTPG-F------GDAV---DNSNCWQPVIDYID-------------SKFEDYLNAESRVN 130 (418)
T ss_dssp -------------CEEEEEEECC---------------------CHHHHHHHH-------------HHHHHHTTTSCC-C
T ss_pred EecC----C---cccceeeeechh-h------hhhc---cchhhHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 0000 0 000000000000 0 0000 00000011111111 13455677899999
Q ss_pred HHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q psy10512 245 RALYVKPH---LLLLDEPT-NHLDLDACVWLEEELKTYKRILVIISHSQD 290 (629)
Q Consensus 245 raL~~~P~---iLLLDEPT-~~LD~~~~~~l~~~L~~~~~tvIivsHd~~ 290 (629)
|+++.+|+ ||++|||| ++||+....++. .|.. +.+||+|.|..+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk-~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK-RLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH-HHTT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHHHHHH-HHhc-cCcEEEEEEccc
Confidence 99999999 99999999 699998865554 4444 678888887644
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-15 Score=152.27 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHH
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (629)
+|++++|+||||||||||+++|+|++.|..|.+.+...+ +.... .. .....+.. ...+...+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D--~~r~~--a~-------~ql~~~~~-~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD--TFRAA--GG-------TQLSEWGK-RLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC--CSSTT--TT-------HHHHHHHH-HHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec--CCChh--HH-------HHHHHHHH-hcCceEEEeCCCCC
Confidence 699999999999999999999999999999988775432 11100 00 00000000 00111111100000
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHH
Q psy10512 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACV 269 (629)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~ 269 (629)
....+++.+.. .........+++..|... ...+.+.+ ..+||++|||||+.+|+ +|.|| |+++.+.. .
T Consensus 169 p~~~v~~~v~~---~~~~~~d~~llDt~G~~~-~~~~~~~e---Ls~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~ 238 (304)
T 1rj9_A 169 SAALAYDAVQA---MKARGYDLLFVDTAGRLH-TKHNLMEE---LKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--E 238 (304)
T ss_dssp HHHHHHHHHHH---HHHHTCSEEEECCCCCCT-TCHHHHHH---HHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--H
T ss_pred HHHHHHHHHHH---HHhCCCCEEEecCCCCCC-chHHHHHH---HHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--H
Confidence 00011111000 000000001233345432 22233344 45899999999999999 67777 66665533 2
Q ss_pred HHHHHHhhcCCEEEEEecCH
Q psy10512 270 WLEEELKTYKRILVIISHSQ 289 (629)
Q Consensus 270 ~l~~~L~~~~~tvIivsHd~ 289 (629)
.+..+-...+.|+|++||+.
T Consensus 239 ~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHcCCcEEEEECCc
Confidence 33333345588999999984
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-14 Score=147.89 Aligned_cols=75 Identities=32% Similarity=0.472 Sum_probs=67.9
Q ss_pred cccCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcce
Q psy10512 228 KKTKDFSGGWRMRI------ALARALYVK-PHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 228 ~~~~~LSGGqrqRv------~LAraL~~~-P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~ 298 (629)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 99999999999999999999999998763 59999999987 5789999
Q ss_pred eEEEc
Q psy10512 299 IIHLD 303 (629)
Q Consensus 299 ii~l~ 303 (629)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-15 Score=158.36 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCCh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEV 494 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 494 (629)
+|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|...+.. +.+. ...... + .+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~-------~~~~~~---~----v~Q- 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYV-------FKHKKS---I----VNQ- 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSC-------CCCSSS---E----EEE-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhhh-------hccCce---E----EEe-
Confidence 566665 7899999999999999999999999999998 8998653321 0000 000000 0 000
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEe
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVS 574 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vs 574 (629)
. .+|+. +..| +.+|+++|..+|++||+|||| |+++...+.+.. ..+.+||.++
T Consensus 189 -~---------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~ 241 (372)
T 2ewv_A 189 -R---------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTL 241 (372)
T ss_dssp -E---------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECC
T ss_pred -e---------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEE
Confidence 0 13332 1344 469999999999999999999 888766655554 3366789999
Q ss_pred cCHHHHHhhcCEE
Q psy10512 575 HDFRLINQVAEEI 587 (629)
Q Consensus 575 Hd~~~~~~~~d~i 587 (629)
|+.+ +..+|||+
T Consensus 242 H~~~-~~~~~~rl 253 (372)
T 2ewv_A 242 HTNT-AIDTIHRI 253 (372)
T ss_dssp CCCS-HHHHHHHH
T ss_pred Ccch-HHHHHHHH
Confidence 9865 55566664
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=144.96 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=67.5
Q ss_pred cCcCcCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCE
Q psy10512 516 CPIRQLSDGQKCRV------VFAYLAWQA-PHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 516 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~ 586 (629)
.++..|||||+||| ++|++++.+ |++|||||||++||+..+..+.+.|.++. .+||+||||.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46789999999988 567888999 99999999999999999999999998873 48999999987 5689999
Q ss_pred EEEEe
Q psy10512 587 IWICE 591 (629)
Q Consensus 587 i~~l~ 591 (629)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-14 Score=141.59 Aligned_cols=144 Identities=11% Similarity=0.162 Sum_probs=85.6
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCce-------eEEeeccchhcccCCCCCHHHHHhhcC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSHL-------RFARYHQHLHELLDLDISPLDYMLQSF 491 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~ 491 (629)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++. .++|++|..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~------------------ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH------------------ 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH------------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH------------------
Confidence 346789999999999999999999999999986 67777654421 122222221
Q ss_pred CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE
Q psy10512 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLV 571 (629)
Q Consensus 492 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi 571 (629)
.........-.+..... ....+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.+|+
T Consensus 72 ------~~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~ 134 (219)
T 1s96_A 72 ------DEFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIF 134 (219)
T ss_dssp ------HHHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEE
T ss_pred ------HHHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEE
Confidence 11111111000000000 001111111222 34455678999999 99999999999887 367899
Q ss_pred EEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 572 LVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 572 ~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
++|||++.+.. |+ +.+| .++.+++.+.+
T Consensus 135 i~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 135 ILPPSKIELDR---RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp EECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred EECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence 99999998865 32 4555 35666655444
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-15 Score=159.77 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=97.3
Q ss_pred eEeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCCCC----CceEEEee--cccCCCCCcchhhhhhhchHHHHHH
Q psy10512 103 LQDTMLELNC--GRRYGLLGLNGSGKSTLLAVLGNREVPVP----DHIDIFHL--TREMPASDKSALTCVMEVDEERVRL 174 (629)
Q Consensus 103 L~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~L~g~~~p~~----g~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (629)
.+.|+++|.+ |++++|+||||||||||+++|+|++.|.. |.+.+... +.+.... .. +. ..+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~-~~--------~~--~~I 226 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQ-YS--------DY--PQM 226 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSC-TT--------TH--HHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCC-hh--------HH--HHH
Confidence 5679999999 99999999999999999999999998877 66543210 0011000 00 00 011
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc-cCCCE
Q psy10512 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY-VKPHL 253 (629)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~i 253 (629)
....+.. ......+.+.+.... . ...+..+..+|+|++++..+++++. .+|++
T Consensus 227 ~~~~q~~--------~~~~~t~~~nl~~~~----------------~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 280 (365)
T 1lw7_A 227 ALGHQRY--------IDYAVRHSHKIAFID----------------T--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDV 280 (365)
T ss_dssp HHHHHHH--------HHHHHHHCSSEEEES----------------S--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSE
T ss_pred HHHHHHH--------HHHHHhccCCEEEEe----------------C--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCE
Confidence 1110000 000011111111111 0 1112223456677788888888875 69999
Q ss_pred EEEeC---CC------CCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 254 LLLDE---PT------NHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 254 LLLDE---PT------~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
+|||| |+ .++|+..+..+.+.|. +.+.+||+++|. ....++|+++.+|+
T Consensus 281 llLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 281 TILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp EEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred EEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 99999 65 5899988888888773 337899999986 56667777776664
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-14 Score=151.33 Aligned_cols=130 Identities=20% Similarity=0.130 Sum_probs=88.7
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
+|++++ +++|++++|+||||||||||+++|+|++.|. .|.|.+.....++.. ...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~--~~~-------------------- 182 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHK-------------------- 182 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC--CCS--------------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh--ccC--------------------
Confidence 344444 7899999999999999999999999998886 687755332111000 000
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
...+... .+|+. +..| +.+|+++|..+|++||+||||
T Consensus 183 -------------------~~~v~Q~-----------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 183 -------------------KSIVNQR-----------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp -------------------SSEEEEE-----------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC
T ss_pred -------------------ceEEEee-----------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC
Confidence 0000000 12331 2345 469999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 261 NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
|+++...+.+.. ..+.++|.++|+.+ +..+|||++.|.
T Consensus 220 ---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 220 ---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp ---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred ---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 888766555443 34789999999966 777889887653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=131.36 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc--CCCC-----CccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG--DLTP-----SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.|++|++++|+||||||||||++.|++ +.+| ..|.+++.+.. ....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~~~------------ 72 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TFRP------------ 72 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CCCH------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------CcCH------------
Confidence 488999999999999999999999999 5665 34444443211 0011
Q ss_pred hHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----HH
Q psy10512 496 DREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCR-VVFAYLAW--QAPHLLLLDEPTNHLDME-------T-----ID 557 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqr-v~lAral~--~~p~lLlLDEPT~~LD~~-------~-----~~ 557 (629)
.++..++..+|+... ..-.....++..+... +.-+..++ .+|++|++||||+.+|.. + ..
T Consensus 73 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 73 --ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp --HHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 011111122222110 0000112345555433 22232333 589999999999999975 2 23
Q ss_pred HHHHHHh----hcCceEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q psy10512 558 ALADAIN----DFEGGLVLVSHDFRLINQ-------------------VAEEIWICENG 593 (629)
Q Consensus 558 ~l~~~l~----~~~~~vi~vsHd~~~~~~-------------------~~d~i~~l~~G 593 (629)
.+...|. +.+.+||+++|....... +||.+++|+.+
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3333333 347799999997665433 89999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-15 Score=171.97 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred eEEEEeEEEEeCC--eeeeEee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCCceEEEeecccC
Q psy10512 87 DVKIANFSITFHG--CELLQDT----------MLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VPDHIDIFHLTREM 153 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-~~g~i~i~~~~~~~ 153 (629)
.+.++||++.|+. +++|+.+ +|+++. +||||||||||||||++|+|+..| ++|.+.+.+.....
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4788999999975 3355444 366664 999999999999999999999888 68888665432110
Q ss_pred ---C-C-CCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhc
Q psy10512 154 ---P-A-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQK 228 (629)
Q Consensus 154 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 228 (629)
. . .....+.++. +.. .+.+..+ +.+.+. .+...+...+
T Consensus 87 ~~~~~~~~~~~~i~~v~-------------Q~~-~l~~~~t------v~e~i~---------~~~~~~~~~~-------- 129 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQD-------------YEI-EISDASE------VEKEIN---------KAQNAIAGEG-------- 129 (608)
T ss_dssp EECSSSSCCEEEESCC----------------C-CCCCHHH------HHTTHH---------HHHHHHHCSS--------
T ss_pred ecCCccccceeEEeeec-------------ccc-cCCCHHH------HHHHHH---------HHHHHhcCCc--------
Confidence 0 0 0001111100 000 0111111 111110 0001111100
Q ss_pred ccCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHH
Q psy10512 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEP------TNHLDLDACVWLEEELKTY-----KRILVIISHSQDF 291 (629)
Q Consensus 229 ~~~~LSGGqrqRv~LAraL~~~P~iLLLDEP------T~~LD~~~~~~l~~~L~~~-----~~tvIivsHd~~~ 291 (629)
..+| ++++.++.+....|+++|+||| |++||+.....+.+.+.++ +.++++++||.+.
T Consensus 130 --~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 130 --MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp --SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred --cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 0111 1223333444568999999999 9999999999988888775 4688999999763
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-15 Score=157.45 Aligned_cols=155 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred EEEEEEEE---EcCCCCeEe---------eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEe
Q psy10512 401 MVQNVSFR---YSDDGPWIY---------RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFAR 468 (629)
Q Consensus 401 ~~~~l~~~---y~~~~~~il---------~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~ 468 (629)
++++++|. |++....+| +++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 67778877 742111244 99999999999999999999999999999999999999999987531100
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
.... . . .+...+.. .+...++++..++..|+.++...|+.+++|||+
T Consensus 216 ~~~~-~-------~---~v~~v~~q----------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 216 LPDH-P-------N---HVHLFYPS----------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp CTTC-S-------S---EEEEECC--------------------------------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred cccc-C-------C---EEEEeecC----------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 0000 0 0 00000000 000012455568889999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 549 NHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
. .+.. .+++.+..-..+++.++|+.. +...++|+..+..+.
T Consensus 263 ~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 263 G---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp S---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred H---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 6 2222 233333332346888999965 667788888877653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=130.64 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=36.6
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHH----hhcCCEEEEEecCHHHHHh------------------
Q psy10512 249 VKPHLLLLDEPTNHLDLD-------A-----CVWLEEEL----KTYKRILVIISHSQDFLNG------------------ 294 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~-------~-----~~~l~~~L----~~~~~tvIivsHd~~~l~~------------------ 294 (629)
.+|++|++||||+.+|+. + ...+...| ++.+.|||+++|.......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 2 22333333 3458999999997665443
Q ss_pred -hcceeEEEcCC
Q psy10512 295 -VCTNIIHLDKR 305 (629)
Q Consensus 295 -~~d~ii~l~~G 305 (629)
+||.+++|+.+
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 89999999865
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-14 Score=140.55 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChh
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE 188 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~---g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (629)
.+++++|+||||||||||+++|+ |+..|+.|.+.+..... . . .....+....+. ....+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~----~--~---------~~~~~i~~~~~~-~~~~~~~ 89 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA----S--T---------EVGEMAKQYIEK-SLLVPDH 89 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT----T--C---------HHHHHHHHHHHT-TCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc----C--C---------hHHHHHHHHHHc-CCCCCHH
Confidence 47999999999999999999999 98877766653321100 0 0 000111111111 1111222
Q ss_pred HHHHHH-HHHhh-------hhccChhhHHHHHHHHHH--hCC------------CCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 189 SQEQLM-DIYDR-------LDDISADTAEARAANILH--GLG------------FTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 189 ~~~~~~-~~~~~-------l~~~~~~~~~~~~~~~L~--~lg------------l~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+...+. ..... +....... ..+..+.. .++ + ....++.+..||| |+ +|
T Consensus 90 ~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~a 159 (246)
T 2bbw_A 90 VITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YN 159 (246)
T ss_dssp HHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EE
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cc
Confidence 222211 11100 11121111 22333322 233 2 2345778899999 66 77
Q ss_pred H-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q psy10512 247 L-YVKPHLLLLD----EPTNHLDLDACVWLEEELKTY 278 (629)
Q Consensus 247 L-~~~P~iLLLD----EPT~~LD~~~~~~l~~~L~~~ 278 (629)
| +.+|++++|| |||++||+.+...+.+.|..+
T Consensus 160 l~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 160 LDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 8 9999999999 999999999988888887765
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-15 Score=142.25 Aligned_cols=138 Identities=15% Similarity=0.022 Sum_probs=82.3
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee---------EEeeccchhcccCCCCCHHHHHhhcC--
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR---------FARYHQHLHELLDLDISPLDYMLQSF-- 491 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~---------~~~~~q~~~~~~~~~~~~~~~~~~~~-- 491 (629)
.+.+|++++|+||||||||||+++|+|. |..|.|.+++... ++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 7889998876321 123332211 0111222211000
Q ss_pred ---CChhhHHHHHHHHHHcCCCCccc-ccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q psy10512 492 ---PEVKDREEMRKIIGRYGLTGRQQ-VCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE 567 (629)
Q Consensus 492 ---~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~ 567 (629)
.... ..+..++..+++..... ..++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 79 YAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0000 00000001111111000 2345689999999999999999999876 68988888888876553
Q ss_pred --ceEEEEecC
Q psy10512 568 --GGLVLVSHD 576 (629)
Q Consensus 568 --~~vi~vsHd 576 (629)
..+++.|++
T Consensus 149 ~~~~~~i~t~~ 159 (191)
T 1zp6_A 149 AFEHHVLPVSG 159 (191)
T ss_dssp GGGGGEEECTT
T ss_pred cccccEEECCC
Confidence 234555543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-15 Score=157.18 Aligned_cols=164 Identities=9% Similarity=0.041 Sum_probs=96.8
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCchHHHHHHHHcCCCCCc----cEEEECCceeEEeeccchhcccCCCCCHHHHHhhc
Q psy10512 417 YRNLEFGIDL--DTRLALVGPNGAGKSTLLNLIYGDLTPSV----GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490 (629)
Q Consensus 417 l~~vsl~i~~--Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 490 (629)
...|++.|.+ |++++|+||||||||||+++|+|++.|++ |.+.+.+... ... ......-...+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~----~~~----~~~~~~~~~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG----GDE----QAMQYSDYPQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS----SCT----TSSCTTTHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC----CCc----ccCChhHHHHHHHH
Confidence 4678999999 99999999999999999999999999998 7664421000 000 00000000111111
Q ss_pred CCChhhHHHHHHHHHHcCC-CCcccccCcCcCChhHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHH
Q psy10512 491 FPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAW-QAPHLLLLDE---PT------NHLDMETIDAL 559 (629)
Q Consensus 491 ~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---PT------~~LD~~~~~~l 559 (629)
.. ..........+.+-+ ........+..+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+
T Consensus 230 ~q--~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 230 HQ--RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HH--HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HH--HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 00 000000011111111 001111123456777788888888874 6999999999 65 58999999999
Q ss_pred HHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 560 ADAINDF----EGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 560 ~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
.++|.++ +.+||+++|. ....++|+++.+++
T Consensus 308 ~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 8888443 5689999986 45556777666554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=141.63 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=67.7
Q ss_pred cCcCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---ceEEEEecCHHHHHhhcCEEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAW----QAPHLLLLDEPTNHLDMETIDALADAINDFE---GGLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~---~~vi~vsHd~~~~~~~~d~i~ 588 (629)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456889999999999999999 5899999999999999999999999998863 4899999997765 5799999
Q ss_pred EEe
Q psy10512 589 ICE 591 (629)
Q Consensus 589 ~l~ 591 (629)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-13 Score=129.62 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=35.3
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTN-HLDLDACVWLEEELKT---YKRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~-~LD~~~~~~l~~~L~~---~~~tvIivsHd~~ 290 (629)
.+|++||||||++ ++|+.....+.+.+.. .+.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3999999999985 9999999888887754 3689999998763
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-14 Score=148.59 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=101.9
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCC
Q psy10512 89 KIANFSIT---FHG--CELL---------QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP 154 (629)
Q Consensus 89 ~i~nls~~---y~~--~~~L---------~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~ 154 (629)
++++++|+ |+. ..+| +++||.|++|++++|+||||||||||+++|+|++.|..|.+.+.+. .++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~-~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV-PELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS-SCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc-cccC
Confidence 56777777 753 3355 9999999999999999999999999999999999999998887532 1111
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 155 ASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
..... ....-... .+....++
T Consensus 216 ~~~~~--------------------------------------~~v~~v~~---------------------q~~~~~~~ 236 (361)
T 2gza_A 216 LPDHP--------------------------------------NHVHLFYP---------------------SEAKEEEN 236 (361)
T ss_dssp CTTCS--------------------------------------SEEEEECC-----------------------------
T ss_pred ccccC--------------------------------------CEEEEeec---------------------Cccccccc
Confidence 00000 00000000 00000123
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
++..++..|+.+|..+|+.+++|||+. .+.. .+.+.+..-..|+|.++|+.+ +...++|++.+..+.
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRG---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCS---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchH---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 455688999999999999999999996 2222 233333332347889999976 777899999998764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-14 Score=137.71 Aligned_cols=161 Identities=12% Similarity=0.016 Sum_probs=82.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChh
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE 188 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (629)
.+++|++++|+||||||||||+++|+|. |..|.+.+................++.+...... ...+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~l~~----- 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR---MIMQIAAD----- 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHH---HHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhH---HHHHHHHH-----
Confidence 5789999999999999999999999997 5667666543211000000000111110000000 00000000
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhh--hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ--QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266 (629)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~ 266 (629)
....+.. ... . ..+..++..+++. .+. +.++..+|+|++|+++++|++..+|+++ +|+.
T Consensus 75 ----~~~~~~~-~~~-~----~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~ 135 (191)
T 1zp6_A 75 ----VAGRYAK-EGY-F----VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPL 135 (191)
T ss_dssp ----HHHHHHH-TSC-E----EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHH
T ss_pred ----HHHHHhc-cCC-e----EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHH
Confidence 0000000 000 0 0000011112221 111 3456789999999999999999999877 6888
Q ss_pred HHHHHHHHHhhcC--CEEEEEecCHHHHHhhccee
Q psy10512 267 ACVWLEEELKTYK--RILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 267 ~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~i 299 (629)
....+++.+..+. ..+++.|++. .+..++++|
T Consensus 136 ~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 136 VVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 8888888776542 2344455432 223345544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=127.98 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCC
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKR 305 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G 305 (629)
..++..++++||| ||+.+...+.+.+. .+.||+++|||++.+.. |+ +..|
T Consensus 102 ~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 102 EQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp HHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred HHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 3444568999999 99999999999887 47899999999998876 43 6666
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-14 Score=143.97 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCchHHHHHHHH---cCCCCCccEEEECCce---eEEe----eccchhcccCCCCCHHHHHhh------
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIY---GDLTPSVGMVRKNSHL---RFAR----YHQHLHELLDLDISPLDYMLQ------ 489 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~---~~~~----~~q~~~~~~~~~~~~~~~~~~------ 489 (629)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+.. .+++ +.|.. .+....++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 9999999988664311 1111 11211 11111222222211
Q ss_pred -------cCCChhhHHHHHHHHHHcCCC-------------CcccccCcCcCChhHHHHHHHHHHH-ccCCCEEEEe---
Q psy10512 490 -------SFPEVKDREEMRKIIGRYGLT-------------GRQQVCPIRQLSDGQKCRVVFAYLA-WQAPHLLLLD--- 545 (629)
Q Consensus 490 -------~~~~~~~~~~~~~~l~~~gl~-------------~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD--- 545 (629)
+++. ....+..+.....+. .....+++..||| || +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~--~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPR--TLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCC--SHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCC--CHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 1222 122233332111211 1112345678999 66 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHhhcC
Q psy10512 546 -EPTNHLDMETIDALADAINDFE 567 (629)
Q Consensus 546 -EPT~~LD~~~~~~l~~~l~~~~ 567 (629)
|||++||+.+.+.+.+.|..+.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999988887763
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-15 Score=144.26 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecC-HHHHHhhcceeEEEc
Q psy10512 234 SGGWRMRIALAR------ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHS-QDFLNGVCTNIIHLD 303 (629)
Q Consensus 234 SGGqrqRv~LAr------aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd-~~~l~~~~d~ii~l~ 303 (629)
|+|++|++.++. +|+.+|....+|+ +||+..... ++.+..+ +.++|.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 889888888888 8999999888884 899988777 6666554 4689999999 999999999998 9
Q ss_pred CCeEEEEc
Q psy10512 304 KRKLKYYG 311 (629)
Q Consensus 304 ~G~i~~~~ 311 (629)
+|+++..+
T Consensus 170 ~g~~~~~~ 177 (189)
T 2bdt_A 170 NPRFIFCM 177 (189)
T ss_dssp CGGGSCC-
T ss_pred CCcEEEee
Confidence 99988654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-15 Score=143.21 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=93.2
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMR 501 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (629)
|++++|+||||||||||+++|++ |..|.+.+++.. ..+++++... .....++.+.+. ..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---------~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNIT---------DLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHH---------HHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHH---------HHHH
Confidence 67999999999999999999997 677888776531 1122222110 000001111110 0011
Q ss_pred HHHHHcCC----C---CcccccCcCcC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 502 KIIGRYGL----T---GRQQVCPIRQL--SDGQKCRVVFAY------LAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 502 ~~l~~~gl----~---~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
.++ ..+. + .......+..+ |+|++|++.++. +++.+|....+|+ +||+..+.. ++.+..+
T Consensus 68 ~~~-~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 68 NFL-LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp HHH-HTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred HHH-hcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 111 1111 0 00001112345 889888888888 8888998888884 899988877 7777665
Q ss_pred ---CceEEEEecC-HHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 567 ---EGGLVLVSHD-FRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 567 ---~~~vi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.++|.+||. ++.+..+||+|+ ++|+++ +.|+++-+.
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~ 183 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE 183 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence 3578889998 999999999998 999986 577766543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-13 Score=146.03 Aligned_cols=168 Identities=9% Similarity=0.029 Sum_probs=98.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCCCCccEEEEC---C--ceeEEeecc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN---S--HLRFARYHQ 471 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---~--~~~~~~~~q 471 (629)
.|++.+ ++.|++ .+ ++++||+|++|++ ++|+||||||||||+++|+|+.- .|..... + ...+++++|
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 356667 788853 33 9999999999999 99999999999999999999852 2211110 0 124667766
Q ss_pred chhcccCCCCCHHHHHhhcCC-Ch---------hhHHHHHHHHHHc-CCCCc---ccccC----c-------CcCChhHH
Q psy10512 472 HLHELLDLDISPLDYMLQSFP-EV---------KDREEMRKIIGRY-GLTGR---QQVCP----I-------RQLSDGQK 526 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~l~~~-gl~~~---~~~~~----~-------~~LSgGqk 526 (629)
.... ...+++.+++..+.. .. .....+..+|..+ ++... ..+.+ + ..|+...
T Consensus 90 ~~~l--~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 90 ESNV--RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp C--C--EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred cCcc--ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 5321 112233222211110 00 0123445556655 54311 01111 1 2455555
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c---CceEEEEecCH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND-F---EGGLVLVSHDF 577 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~-~---~~~vi~vsHd~ 577 (629)
+.|+++|..++++|++|+||..|.+.....+.+.+.+ + +.+|+.+|.|-
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999888888777764 3 45788888753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-13 Score=142.75 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=89.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC-----------CCCCccEEEECCceeEEeeccchhcccCCCCCHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD-----------LTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD 485 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 485 (629)
-++++|+++.|++++|+|+|||||||||++|+|. +.|+.|.|.+.+...+. +.+.+. ......+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~-l~DtpG----li~~a~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFT-LADIPG----IIEGASE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEE-EEECCC----CCCCGGG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEE-EEeccc----cccchhh
Confidence 5889999999999999999999999999999998 34445555444311111 111100 0000000
Q ss_pred HHhhcCCCh--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH---H
Q psy10512 486 YMLQSFPEV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL---A 560 (629)
Q Consensus 486 ~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l---~ 560 (629)
+ ..+... ...+++..++..++++ ..++.+||+|++|++.+|++|+..|.||+| |.+|+.....+ .
T Consensus 222 ~--~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~ 291 (416)
T 1udx_A 222 G--KGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALA 291 (416)
T ss_dssp S--CCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHH
T ss_pred h--hhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHH
Confidence 0 000000 0001122233444554 346789999999999999999999999999 99998655322 2
Q ss_pred HHHhhcCceEEEEe-cCH
Q psy10512 561 DAINDFEGGLVLVS-HDF 577 (629)
Q Consensus 561 ~~l~~~~~~vi~vs-Hd~ 577 (629)
+.+.+.+.++|+|| |.-
T Consensus 292 ~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 292 DALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTTTSCEEECCTTTC
T ss_pred HHHHhcCCeEEEEECCCc
Confidence 33333345676665 443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-13 Score=140.82 Aligned_cols=118 Identities=19% Similarity=0.086 Sum_probs=81.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhH
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (629)
++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+.. .+.. .. .
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d-----~~~~---------~~------------~ 142 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-----TQRP---------AA------------R 142 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC-----SSCH---------HH------------H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-----cccH---------hH------------H
Confidence 345566 899999999999999999999999999988888653210 0000 00 0
Q ss_pred HHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHhhc
Q psy10512 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP-TNHLDMETIDALADAINDF 566 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-T~~LD~~~~~~l~~~l~~~ 566 (629)
.....+.+..|+.-.... ...+..+.+|.+|+.+...+++++|+||| +.++|......+.......
T Consensus 143 ~ql~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 143 EQLRLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 011123345566422111 11234456789999998899999999999 9999998888887776654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-13 Score=126.48 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=71.3
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
+|.+.+|+.++|+||||||||||+++|++.+.|..|... .|+ +..+.+ ..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~----------~~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI----------FRL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH----------HHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH----------HHH
Confidence 456778999999999999999999999999877666321 010 011110 001
Q ss_pred HHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CceEEEEecC
Q psy10512 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 501 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
........ .. -....+.+|++||||||++ ++|+.....+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111100 00 0112234899999999985 99999999998888654 5689999987
Q ss_pred H
Q psy10512 577 F 577 (629)
Q Consensus 577 ~ 577 (629)
.
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=128.25 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=41.0
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHH----hhcCCEEEEEecCH-------------------HHHH
Q psy10512 249 VKPHLLLLDEPTNHLDLDAC------------VWLEEEL----KTYKRILVIISHSQ-------------------DFLN 293 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~------------~~l~~~L----~~~~~tvIivsHd~-------------------~~l~ 293 (629)
.+|++|++||||+.+|.+.. ..+...| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 3333433 45589999999982 2357
Q ss_pred hhcceeEEEcCC
Q psy10512 294 GVCTNIIHLDKR 305 (629)
Q Consensus 294 ~~~d~ii~l~~G 305 (629)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-14 Score=130.73 Aligned_cols=59 Identities=15% Similarity=-0.090 Sum_probs=52.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|.|.+.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP 66 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence 33456788888788999999999999999999999999999999999999 999988653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-12 Score=135.65 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=74.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-CCccEEEEC-C-------ceeEEeeccchhcccCCCCCHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-PSVGMVRKN-S-------HLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
++++++. .+|++++|+||||||||||+++|+|+.. |+.|.|... + ...+++++|... +....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 5566654 4799999999999999999999999999 999999865 3 124667766532 22222333321
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
....+.......+.++++.+|+.... ++++.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~-~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYR-DCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSST-TCCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhc-CCCcccCC-HHHHHHHHHhcC
Confidence 11111111233456778888987654 56778999 999999999875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=128.80 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=83.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHH--HHHcCCCCCcc-----EEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLN--LIYGDLTPSVG-----MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk--~l~G~~~p~~G-----~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.|++|++++|+||||||||||++ ++.++.+|+.| .+++++.. ..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~-------------- 224 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF-------------- 224 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC--------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc--------------
Confidence 57899999999999999999999 44677777554 33332210 00
Q ss_pred hHHHHHHHHHHcCCCCccc--ccCcCcCChhHHHHHHH--HHHH--ccCCCEEEEeCCCCCCCHHHH------------H
Q psy10512 496 DREEMRKIIGRYGLTGRQQ--VCPIRQLSDGQKCRVVF--AYLA--WQAPHLLLLDEPTNHLDMETI------------D 557 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~--~~~~~~LSgGqkqrv~l--Aral--~~~p~lLlLDEPT~~LD~~~~------------~ 557 (629)
...++..+...+|+..... +-.+.....++.++-.+ +..+ ..+|++||+||||+.+|.+.. .
T Consensus 225 ~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 225 RPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 0122233344445432100 00111223343333333 3232 257999999999999996432 3
Q ss_pred HHHHHH----hhcCceEEEEecCH-------------------HHHHhhcCEEEEEeCC
Q psy10512 558 ALADAI----NDFEGGLVLVSHDF-------------------RLINQVAEEIWICENG 593 (629)
Q Consensus 558 ~l~~~l----~~~~~~vi~vsHd~-------------------~~~~~~~d~i~~l~~G 593 (629)
.++..| ++++.+||+|+|.. ..+..+||.+++|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 344444 34578999999982 3357889999999865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.5e-13 Score=142.36 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=89.1
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC------ceEEEeecccCCCCCcchhhhhhhchHHHHHHHH
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD------HIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (629)
-++++|+++.|+.++|||+|||||||||++|+|..+...+ ...+..+...- ..... +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~----l~Dtp-------- 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFT----LADIP-------- 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEE----EEECC--------
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEE----EEecc--------
Confidence 4799999999999999999999999999999997421000 00010000000 00000 00000
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhh--HHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEE
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADT--AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iL 254 (629)
.+.... .....+.... ..+++..+|..+++. +.++.+||+|++|++++|++|+..|.||
T Consensus 214 ------Gli~~a---------~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~IL 274 (416)
T 1udx_A 214 ------GIIEGA---------SEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLV 274 (416)
T ss_dssp ------CCCCCG---------GGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred ------ccccch---------hhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEE
Confidence 000000 0000000000 001122334444543 4567789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEe-cCHHHHHhhcce
Q psy10512 255 LLDEPTNHLDLDACVW---LEEELKTYKRILVIIS-HSQDFLNGVCTN 298 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~---l~~~L~~~~~tvIivs-Hd~~~l~~~~d~ 298 (629)
+| |.+|+..... +.+.+.+.+.++|+|| |..+-+..+++.
T Consensus 275 Vl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 275 AL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp EE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred EE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99 9999865432 3333444466777666 554434444433
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.8e-12 Score=114.90 Aligned_cols=86 Identities=26% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
+|+.++|+||||||||||+++|+|.+.+ .|. ...|+... ... . .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~~~---------------~-~---------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--SMP---------------L-T---------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--TSC---------------C-C----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--Hhh---------------H-H----------
Confidence 8999999999999999999999999887 451 11122110 000 0 0
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---Cce-EEEEecC
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGG-LVLVSHD 576 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~-vi~vsHd 576 (629)
+++.+|++||||||+. +|....+.+.++++.. +.+ +|++||.
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6655577888877654 466 7888884
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-12 Score=138.79 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=92.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC-------CCCce--EEEeecccCCC
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNREVP-------VPDHI--DIFHLTREMPA 155 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~~p-------~~g~i--~i~~~~~~~~~ 155 (629)
.+++.+ +++|++.+ |+++||+|++|++ ++||||||||||||+++|+|+... .++.. .+.+..++...
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 477777 89999888 9999999999999 999999999999999999998421 01110 01111111000
Q ss_pred C-CcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC-CCCch---hhhcc-
Q psy10512 156 S-DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL-GFTKE---MQQKK- 229 (629)
Q Consensus 156 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~---~~~~~- 229 (629)
. ..+....+. +....... ..+..+ ......++..+|... ++... ..+..
T Consensus 94 ~~~ltv~D~~~------------------~g~~~~~~---~~~~~i----~~~i~~q~~~~L~e~~~i~r~l~~~~d~rV 148 (427)
T 2qag_B 94 RLKLTIVSTVG------------------FGDQINKE---DSYKPI----VEFIDAQFEAYLQEELKIRRVLHTYHDSRI 148 (427)
T ss_dssp EEEEEEEEEEC------------------CCC-CCHH---HHSHHH----HHHHHHHHHHHHHHC--CCCCCCCSCC--C
T ss_pred ccccchhhhhh------------------hhhccccc---hhhhHH----HHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000000 00000000 000000 001123334444433 33200 01111
Q ss_pred ---c-------CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecC
Q psy10512 230 ---T-------KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHS 288 (629)
Q Consensus 230 ---~-------~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd 288 (629)
+ ..|+-.. +.|+++|..+++||++||||..|.+.....+.+.+.+ .+.+|+.+|.|
T Consensus 149 h~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 149 HVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred cEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 1 2455555 8999999999999999999999999888877766653 46788888865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-12 Score=116.13 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
+|+.++|+||||||||||+++|++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999997655
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-13 Score=148.13 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=88.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc--hhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS--ALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~--~~~~~~ 165 (629)
+.++++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|++.|..|+|.+.....+....... .+..-.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcccc
Confidence 3445555555545567776 4 37899999999999999999999999998888988776543332211100 000000
Q ss_pred hchHHHHHHHH-HHHHHhc--cC---ChhHHHHHHHHHhh----hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 166 EVDEERVRLEK-LAEQLVA--CE---DDESQEQLMDIYDR----LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 166 ~~~~~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
.... ...+.. +.+.... .. +..+.......... +..+....... +...|..+|+... ..+.+|||
T Consensus 222 g~~f-~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 222 DMTF-ARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp TBCH-HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH---HHHHHEEE
T ss_pred CcCH-HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHH---HHHHHHHH
Confidence 0000 000000 0010000 01 11223222222110 11111122222 3345777888642 26789999
Q ss_pred HHHHHHHHHHHHccCCCEEEE
Q psy10512 236 GWRMRIALARALYVKPHLLLL 256 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLL 256 (629)
||+|| |||+|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-13 Score=142.55 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhh
Q psy10512 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGV 295 (629)
Q Consensus 232 ~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~ 295 (629)
+||+||+||+..+++++.+|+++ ||| ..+.+.|+++ +.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 4455555443 57999999975444433
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-13 Score=131.91 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=82.3
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
.++|++++|+||||||||||+++|+|++.|+ .|.|..++.. +........ .. .. ....+...+...+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~----~~~~~~~~~--~~--~~--~~~~~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH----LDNRLLEPR--GL--LP--RKGAPETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB----CCHHHHGGG--TC--GG--GTTSGGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc----CCHHHHHHh--cc--cc--cCCCCchhhHHHH
Confidence 4689999999999999999999999999864 5666544321 110000000 00 00 0011111122223
Q ss_pred HHHHHHcCCCC----cccccCcCcCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEec
Q psy10512 501 RKIIGRYGLTG----RQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575 (629)
Q Consensus 501 ~~~l~~~gl~~----~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsH 575 (629)
...+..+.... ...+ ....+|+||+|+++++ ++++.++.++++|||.. ..+..+-..+|++++
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 33333331111 1112 2235799999999988 77788888877888741 112333457899999
Q ss_pred CHHH-HHhhcCE
Q psy10512 576 DFRL-INQVAEE 586 (629)
Q Consensus 576 d~~~-~~~~~d~ 586 (629)
+.+. +.+++.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 9886 5666666
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-14 Score=154.85 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=96.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee--------EEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR--------FARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~--------~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
++++++|.|.+|+.++|+|||||||||||++|+|+++|+.|.|.+.+..- +.+..+... .....+..+.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~--~~~~~~~~~~l 326 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM--GEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS--SSCCBCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc--ccCCcCHHHHH
Confidence 57889999999999999999999999999999999999999998865321 111111100 00011111111
Q ss_pred -------------------------h---hcCCChh--hHHHHHHHHHHcCC-----CCccc---c---cCcCcCChhHH
Q psy10512 488 -------------------------L---QSFPEVK--DREEMRKIIGRYGL-----TGRQQ---V---CPIRQLSDGQK 526 (629)
Q Consensus 488 -------------------------~---~~~~~~~--~~~~~~~~l~~~gl-----~~~~~---~---~~~~~LSgGqk 526 (629)
. .+..... -...+.+++.++.. ..... + .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 0 0100000 00112333333322 21110 0 12246899999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEE--EecCHHHHHhhcCE
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVL--VSHDFRLINQVAEE 586 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~--vsHd~~~~~~~~d~ 586 (629)
||++++. + | |+|||+.+...+++.|.++ +.++++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987751 2 7 9999998877666666555 357764 89999999988863
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-14 Score=145.79 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC--------CCCccEEEECCcee--------------------------EEee---c
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL--------TPSVGMVRKNSHLR--------------------------FARY---H 470 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~~~~~--------------------------~~~~---~ 470 (629)
++++|+|+|||||||||+.|.|+. .|+.|+|.+++..- ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 78999987765321 0011 0
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhH-----HHH------HHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDR-----EEM------RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
|.. .+.++.++.++.....+..... ... ..++..+++..... .. .+||+||+||+..+++++.+|
T Consensus 85 q~~--~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~-~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 85 DKG--NIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHT--SCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH-HH-HHCHHHHHHHHTCSEEEEECT
T ss_pred hcC--CCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH-HH-hhchHHHHHHHhCCEEEEECc
Confidence 110 0011111111111000000000 000 01122334433222 22 379999999999989999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhh
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQV 583 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~ 583 (629)
+++ ||| ..+.+.|+++ +.+|+++||+...+..+
T Consensus 161 dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 161 DVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp TTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred ccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 987 999 4555555554 46899999964444333
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-11 Score=129.26 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=72.4
Q ss_pred EEEEECCCCCchHHHHHHHHc-CCCCCccEEEECCce---------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG-DLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (629)
.+.|+||||+|||||+++|+| ++.|+.|.+.+++.. .++++++.....+. .+ + . ......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-----~-~~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT--PS--D-----M-GNNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEEC--CC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEec--Hh--h-----c-CCcchH
Confidence 389999999999999999999 889999998776421 12233322111010 00 0 0 001111
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecC
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHD 576 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd 576 (629)
.+++.++.+.-..... ... .||| +..+|++||||||++ ||..+...|.+.|.+.. .++|++||+
T Consensus 108 ~~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp HHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred HHHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 3444444442211111 111 5676 788999999999999 99999999999999873 579999999
Q ss_pred HHH
Q psy10512 577 FRL 579 (629)
Q Consensus 577 ~~~ 579 (629)
...
T Consensus 174 ~~~ 176 (354)
T 1sxj_E 174 MSP 176 (354)
T ss_dssp SCS
T ss_pred HHH
Confidence 653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-13 Score=142.29 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=57.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEee
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~ 149 (629)
.|+++++++.|++..+|+++||++.+|++++|+||||||||||+++|+|++.|..|.+.+...
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 377889999998788999999999999999999999999999999999999998999887654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-14 Score=151.38 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=86.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee-------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR------------- 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~------------- 465 (629)
++.++++++.|+. ..+|+++ + ..+|++++|+|||||||||||++|+|+++|++|.|...+...
T Consensus 143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 4566677666632 2267777 5 378999999999999999999999999999999997643210
Q ss_pred --EEee---------ccchhcccCCC----CCHHHHHhh---c------CCChhhHHHHHHHHHHcCCCCcccccCcCcC
Q psy10512 466 --FARY---------HQHLHELLDLD----ISPLDYMLQ---S------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521 (629)
Q Consensus 466 --~~~~---------~q~~~~~~~~~----~~~~~~~~~---~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 521 (629)
+++. .|.+...+... .++.+.+.. + ... .....+...|..+|+.... .+.+|
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~-~~~~~~i~rL~~lgl~~~~---~~~~L 294 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHT-NTAVGAVTRLRDMGIEPFL---ISSSL 294 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECC-SSSHHHHHHHHHHTCCHHH---HHHHE
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccch-hhHHHHHHHHHHcCCcHHH---HHHHH
Confidence 1111 12221111111 233333321 1 011 1112334457788886532 56799
Q ss_pred ChhHHHHHHHHHHHccCCCEEE
Q psy10512 522 SDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 522 SgGqkqrv~lAral~~~p~lLl 543 (629)
||||+|| |||+|+.+|+++.
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999876
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-12 Score=138.34 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=42.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+++||++.+|++++|+|+||||||||+++|+|+++|+.|+|.+.+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 568899999999999999999999999999999999999998853
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-12 Score=132.13 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=87.2
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee-----------------EEeeccchhcccCCCCCHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR-----------------FARYHQHLHELLDLDISPLDY 486 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~-----------------~~~~~q~~~~~~~~~~~~~~~ 486 (629)
.++|++++|+||||||||||+++|+|+++|+.|+|.+.+... +.+++|... ..+..++.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHH
Confidence 367999999999999999999999999999999998764211 112222110 0111111111
Q ss_pred HhhcCCChhhHHHHH-HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 487 MLQSFPEVKDREEMR-KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 487 ~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+.... ..... -+++..|..+.. ...+.+|| .+++++..++.+++||.+|. .|. ...+...-..
T Consensus 204 l~~~~-----~~~~d~vliDtaG~~~~~-~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~ 267 (328)
T 3e70_C 204 IQHAK-----ARGIDVVLIDTAGRSETN-RNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEA 267 (328)
T ss_dssp HHHHH-----HHTCSEEEEEECCSCCTT-TCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHH
T ss_pred HHHHH-----hccchhhHHhhccchhHH-HHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHh
Confidence 11000 00000 001112221111 11223333 48999999999999996665 332 2222222234
Q ss_pred cCceEEEEecCH---------HHHHhhcCEEEEEeCCEE
Q psy10512 566 FEGGLVLVSHDF---------RLINQVAEEIWICENGKV 595 (629)
Q Consensus 566 ~~~~vi~vsHd~---------~~~~~~~d~i~~l~~G~i 595 (629)
.+.++|++||.- ..+....-.|.++..|+-
T Consensus 268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 578899999953 234455567888888864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-12 Score=137.79 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------e
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------L 464 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~ 464 (629)
|+++++++.|+. ..+++++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+.+. .
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 456677777742 23799999999999999999999999999999999999999999976431 1
Q ss_pred eEEeeccchhcccCCCC----------CHHHH-------------------------Hhhc-------C-CC-hhhHH--
Q psy10512 465 RFARYHQHLHELLDLDI----------SPLDY-------------------------MLQS-------F-PE-VKDRE-- 498 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~----------~~~~~-------------------------~~~~-------~-~~-~~~~~-- 498 (629)
++++++|.......... ...+. +... . +. ....+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 23445554321110000 00000 0000 0 00 00000
Q ss_pred --HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 499 --EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ------APHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 499 --~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
.+.+....+.+. .....+...+|+|++|++..+++++. .|++++ ||++|...++.|++.|.++
T Consensus 188 ~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011222222231 11111234689999999999999887 688877 9999999999999998764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-13 Score=126.48 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=72.7
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCceeEEee---ccchh-cccC-----CCCCHHHHHhhcCCChh
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSHLRFARY---HQHLH-ELLD-----LDISPLDYMLQSFPEVK 495 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~~~~~~---~q~~~-~~~~-----~~~~~~~~~~~~~~~~~ 495 (629)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.....+- ..... .... .......++.. . .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~--~--~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR--V--S 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE--C--C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec--C--C
Confidence 589999999999999999999999998 899988764211100 00000 0000 00000000000 0 0
Q ss_pred hHH--HHHHHHHH-c-CCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CCCHHHHHHHHH
Q psy10512 496 DRE--EMRKIIGR-Y-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL-------LLDEPTN---HLDMETIDALAD 561 (629)
Q Consensus 496 ~~~--~~~~~l~~-~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPT~---~LD~~~~~~l~~ 561 (629)
.+. .+.+++.. + |+.. .-...|||||+||++||||++.+|++. +-|.|.. .+|....+.+.+
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~ 154 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE 154 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence 111 34555555 4 3322 122359999999999999999998763 3355532 234455566666
Q ss_pred HHhh
Q psy10512 562 AIND 565 (629)
Q Consensus 562 ~l~~ 565 (629)
.|.+
T Consensus 155 ~i~~ 158 (171)
T 2f1r_A 155 FILS 158 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-12 Score=118.02 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=50.8
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 463 (629)
.+++++.|+. ..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+.+.
T Consensus 10 ~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 10 DEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY 68 (158)
T ss_dssp SHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT
T ss_pred CHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE
Confidence 3456666742 24799999999999999999999999999999999999 99999987663
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-12 Score=130.70 Aligned_cols=122 Identities=12% Similarity=0.010 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhh-----------cCCCh
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-----------SFPEV 494 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-----------~~~~~ 494 (629)
.+.+++|+|++|||||||.++|.+++.+. |. ....+.+++|+.. ..+.+..+.+.. +.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f---~~~~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF---YLTHEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG---BCCHHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc---cCChHHHHHHhccccccchhhhccCcch
Confidence 46799999999999999999999999763 20 0111222244321 112222222211 12333
Q ss_pred hhHHHHHHHHHHcCCC------Cc-ccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 495 KDREEMRKIIGRYGLT------GR-QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~------~~-~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~ 555 (629)
.+...+.+.+..+.-. .. .....-..+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 4455666777776432 10 0111235899999999999843333899999999999999853
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-11 Score=125.56 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=90.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHh--ccCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV--ACED 186 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 186 (629)
..++|++++|+||||||||||+++|+|++.|..|.+.+...+ +... ... ..+......+. ....
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D--~~r~--~a~----------eql~~~~~~~gv~~v~q 190 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD--TFRA--GAI----------EQLEEHAKRIGVKVIKH 190 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--CSST--THH----------HHHHHHHHHTTCEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec--cccc--chH----------HHHHHHHHHcCceEEec
Confidence 347899999999999999999999999999999988775432 1111 000 00111111111 1111
Q ss_pred hhHHHHHHHHHhhhhccChhhHHHHH-HHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy10512 187 DESQEQLMDIYDRLDDISADTAEARA-ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265 (629)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~ 265 (629)
.........+++.+.. .. .... .-+++..|... .....+.+|| .++|++..++.+++||.+|. .|.
T Consensus 191 ~~~~~p~~~v~e~l~~---~~-~~~~d~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~ 257 (328)
T 3e70_C 191 SYGADPAAVAYDAIQH---AK-ARGIDVVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI 257 (328)
T ss_dssp CTTCCHHHHHHHHHHH---HH-HHTCSEEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH
T ss_pred cccCCHHHHHHHHHHH---HH-hccchhhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH
Confidence 0000000111111100 00 0000 00122233321 1222233343 48999999999999996665 333
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCH---------HHHHhhcceeEEEcCCeE
Q psy10512 266 DACVWLEEELKTYKRILVIISHSQ---------DFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 266 ~~~~~l~~~L~~~~~tvIivsHd~---------~~l~~~~d~ii~l~~G~i 307 (629)
...+..+-...+.|+|++||.- +.+....-.|.++..|+-
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 2333333345688999999953 344455567888887754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-13 Score=152.46 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=98.5
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh-----hhh--hchHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT-----CVM--EVDEERVR 173 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~ 173 (629)
.++++++|.+++|+.++|+|||||||||||++|+|+++|..|.+.+.+.. ++.......+. .+. ... ....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~-E~~~~~~~~v~~~~r~~~~~~~~~-~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR-EIKLYHENWIAEVTRTGMGEGEID-MYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC-CCCCCCSSEEEEECBCCSSSCCBC-HHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc-cccCCCCCeEEEEeecccccCCcC-HHHH
Confidence 46788999999999999999999999999999999999988888775421 11110000000 000 000 0000
Q ss_pred HHHHHHHHhcc------CChhHHHHHHHHHhhhh-------ccChhhHHHHHHHHHH-hCCCCchhh---h---cccCCC
Q psy10512 174 LEKLAEQLVAC------EDDESQEQLMDIYDRLD-------DISADTAEARAANILH-GLGFTKEMQ---Q---KKTKDF 233 (629)
Q Consensus 174 ~~~~~~~~~~~------~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~L~-~lgl~~~~~---~---~~~~~L 233 (629)
+. ..+... ......+ ...++..+. .+....+...+..+.. .+++...+. + .....+
T Consensus 326 l~---~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 326 LR---AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HH---TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HH---HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 00 000000 0000111 111111110 1111222222222221 134432221 1 234568
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHHhhcc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVI--ISHSQDFLNGVCT 297 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIi--vsHd~~~l~~~~d 297 (629)
|||++||+++| ++ | |+|||+.....+++.|.++ +.|+|+ +||+++++...|+
T Consensus 402 s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999998765 11 7 9999998876666655544 568875 8999999998884
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=122.52 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=40.1
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHH-Hhhccee
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFL-NGVCTNI 299 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l-~~~~d~i 299 (629)
+..+|+|||||||++ ||+.+...|.+.|.+. +.++|++||+++.+ ..+.+|+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc
Confidence 788999999999999 9999999999999876 46899999997532 3344444
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=118.40 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=87.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++.+.+..+.+.+... +... .
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~--d~~~---~-------- 139 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA--DTQR---P-------- 139 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC--CSSC---H--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC--Cccc---H--------
Confidence 55677888887543 788888 99999999999999999999999998877777765432 1100 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.... ++. .+.+..|+.. ... ....+..+.+|.+|++++
T Consensus 140 -~~~~-------ql~-------------------------------~~~~~~~l~~-~~~--~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 140 -AARE-------QLR-------------------------------LLGEKVGVPV-LEV--MDGESPESIRRRVEEKAR 177 (295)
T ss_dssp -HHHH-------HHH-------------------------------HHHHHHTCCE-EEC--CTTCCHHHHHHHHHHHHH
T ss_pred -hHHH-------HHH-------------------------------HhcccCCeEE-EEc--CCCCCHHHHHHHHHHHHH
Confidence 0000 000 0011123321 000 001233455789999998
Q ss_pred ccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q psy10512 248 YVKPHLLLLDEP-TNHLDLDACVWLEEELKT 277 (629)
Q Consensus 248 ~~~P~iLLLDEP-T~~LD~~~~~~l~~~L~~ 277 (629)
..+++++|+||| ++++|......+......
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 899999999999 999999888887776654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-13 Score=132.40 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=78.6
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCC-------------CCccEEEECCceeEEeeccchh---ccc-----CCCCCH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLT-------------PSVGMVRKNSHLRFARYHQHLH---ELL-----DLDISP 483 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~~~~~~q~~~---~~~-----~~~~~~ 483 (629)
++|++++|+||||||||||+++|+|+++ |..|.+ ++. .|.+.... ... ....+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~~~~~~~~i~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVTREMMQRDIAAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECCHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEccHHHHHHHHHcCCCEeeeee
Confidence 5799999999999999999999999886 555552 221 11111100 000 000000
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 484 LDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV---VFAY-LAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
..++ + . ...+.+.++++.-... .. . + .+ .|-++.. ..++ +++.+|.+++|||||+++|.++.+.+
T Consensus 77 ~~n~---~-g-~~~~~i~~~~~~~~~~-~~-~--~-~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i 145 (198)
T 1lvg_A 77 SGNL---Y-G-TSKEAVRAVQAMNRIC-VL-D--V-DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESL 145 (198)
T ss_dssp TTEE---E-E-EEHHHHHHHHHTTCEE-EE-E--C-CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHH
T ss_pred cCcc---C-C-CCHHHHHHHHHcCCcE-EE-E--C-CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHH
Confidence 0000 0 1 1334555555431110 00 0 0 00 1111111 1455 67888999999999999999888888
Q ss_pred HHHHhhcCceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
.+.|...... +.++|. . ..+|.|++++
T Consensus 146 ~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 146 AKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp HHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred HHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 8877654322 244562 1 5689887765
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-12 Score=125.30 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH-HHhhcce
Q psy10512 231 KDFSGGWRMRIALA-RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF-LNGVCTN 298 (629)
Q Consensus 231 ~~LSGGqrqRv~LA-raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~-l~~~~d~ 298 (629)
..+|+||+||+++| ++++.++.++++|||. +..+...--.+|+++++.+. +.+++.|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 45799999999998 8999999998999984 11223333567888888776 5555655
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=118.03 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=73.2
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
+|...+|++++|+|||||||||+++.|++.+.+..|+|.+.+. +.. .. ...+.+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~-------r~-----------~a~eqL 151 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF-------RA-----------AAIEQL 151 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT-------CH-----------HHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc-------cH-----------HHHHHH
Confidence 4456788999999999999999999999999998888765321 100 00 011234
Q ss_pred HHHHHHcCCCCcccccCcCcCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy10512 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRV---VFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 501 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPT~ 549 (629)
..+++.+|++. +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 45666777742 236789999999 89999999999999999985
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-11 Score=124.68 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=71.7
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCCceEEE-eecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-PVPDHIDIF-HLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-p~~g~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
++++++. .+|++++|+||||||||||+++|+|... |..|.+.+. +.+..... ...+..+.+ .
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~--~~~i~~v~q-------------~ 269 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT--AARLYHFPH-------------G 269 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C--CCEEEECTT-------------S
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE--EEEEEEECC-------------C
Confidence 5666664 4799999999999999999999999998 999988764 21111000 000000000 0
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
....+.+ ...+ ..+..+...+....+.++++.+|+. .+.+..+.+|| ||+||++||+++
T Consensus 270 ~~l~dtp-gv~e-----~~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 270 GDVIDSP-GVRE-----FGLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CEEEECH-HHHT-----CCCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred CEecCcc-cHHH-----hhhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 0000000 0000 0112233344456677889999996 56788999999 999999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-11 Score=130.60 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=41.8
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
-+++||++.+|++++|+|+||||||||+++|+|++.|..|.|.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 468999999999999999999999999999999999888888775
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=115.74 Aligned_cols=135 Identities=9% Similarity=0.096 Sum_probs=87.1
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
.+|++++|+|||||||||++..|++.+.++.| .|. ++..+.. ..+. .+....+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~--------lv~~D~~-----r~~a-------------~eqL~~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA--------FITTDTY-----RIAA-------------VEQLKTY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE--------EEECCCS-----STTH-------------HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE--------EEecCcc-----cchH-------------HHHHHHH
Confidence 46899999999999999999999999998778 343 2322211 1111 1223333
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----C-ceEEEE--ecC
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----E-GGLVLV--SHD 576 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~-~~vi~v--sHd 576 (629)
.+.+|+.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++..-. . ..++++ ||+
T Consensus 157 ~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 4445554211 122 2334566664 4899999999 9999987665554433222 1 234444 999
Q ss_pred HHHHHhhcCEEEEEeCCEEE
Q psy10512 577 FRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 577 ~~~~~~~~d~i~~l~~G~i~ 596 (629)
...+.++|+++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99999999987766667665
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-11 Score=122.43 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=73.0
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCc----------e-eEEeeccchhcc-cC--CCCCHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSH----------L-RFARYHQHLHEL-LD--LDISPLDY 486 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~~--~~~~~~~~ 486 (629)
+..|++++|+||||||||||+|+|+ ++.|++|+|.. .|. . .+++++|.+... +. ..+++ +.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999987 442 0 246776664211 11 23444 33
Q ss_pred Hhhc----------C----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 487 MLQS----------F----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 487 ~~~~----------~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
+... + +.......+.++|+.++|......+++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111 1 111234568899999999863445677899998889999986
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=106.40 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=41.7
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCCEEEEEecCHHH--------HHhhcceeEEEcC
Q psy10512 249 VKPHLLLLDEPTNHL--DLDAC----VWLEEELKTYKRILVIISHSQDF--------LNGVCTNIIHLDK 304 (629)
Q Consensus 249 ~~P~iLLLDEPT~~L--D~~~~----~~l~~~L~~~~~tvIivsHd~~~--------l~~~~d~ii~l~~ 304 (629)
.+|+++++|+|++.+ |+... ..|.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55322 23444556678999999998775 5678999999964
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=111.84 Aligned_cols=137 Identities=14% Similarity=0.150 Sum_probs=85.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhH
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES 189 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (629)
.+|++++|+|||||||||++..|++.+.+..| .+.+.. .+... .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~--~D~~r--~~-----------------------------a 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT--TDTYR--IA-----------------------------A 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE--CCCSS--TT-----------------------------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe--cCccc--ch-----------------------------H
Confidence 47999999999999999999999998877667 444322 11100 00 0
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269 (629)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~ 269 (629)
.+. ...+.+.+|++.. ...+ +...+.+|++ +.+|+++|+| |+++|+....
T Consensus 150 ~eq-------------------L~~~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~ 199 (296)
T 2px0_A 150 VEQ-------------------LKTYAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQ 199 (296)
T ss_dssp HHH-------------------HHHHHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHH
T ss_pred HHH-------------------HHHHHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHH
Confidence 000 0011112333210 0112 2334666765 4899999999 9999987655
Q ss_pred HHHHHHhhc-----CCEEEEE--ecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 270 WLEEELKTY-----KRILVII--SHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 270 ~l~~~L~~~-----~~tvIiv--sHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
.+.++.+-. ..+++++ +|+.+.+.++|+++..+..+.++..
T Consensus 200 ~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 200 YIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 544433221 1235555 8999999999999887777777753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=113.40 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=70.5
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhcc
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (629)
.++|...+|++++|+|||||||||++..|++.+.+..+.+.+...+ .. +...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D--~~----------------r~~a---------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD--TF----------------RAAA---------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--TT----------------CHHH----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc--cc----------------cHHH----------
Confidence 3566678899999999999999999999999988776676653211 00 0000
Q ss_pred CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy10512 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI---ALARALYVKPHLLLLDEPTN 261 (629)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv---~LAraL~~~P~iLLLDEPT~ 261 (629)
.+.+..+++.+|++. +..+|||+.+++ +|++++..+|+++|+|||..
T Consensus 148 ------------------------~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ------------------------IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------------------------HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------------------------HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001112233445531 346789999999 99999999999999999974
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-13 Score=129.12 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 243 LAR-ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 243 LAr-aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
.|+ +++.+|.+++|||||+++|.++...+.+.|.....- +.++|.. ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 566 788899999999999999988877777766543211 2445621 56899887763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-12 Score=136.37 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=99.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc------------CCCCCccEEEECCce------------e---EEeeccchhc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG------------DLTPSVGMVRKNSHL------------R---FARYHQHLHE 475 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~~------------~---~~~~~q~~~~ 475 (629)
.+..|.+++|+|+||||||||+++|+| .+.|+.|.|.+.+.. . ..++.+...
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG- 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG- 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc-
Confidence 456899999999999999999999999 667999999887521 0 112221111
Q ss_pred ccCCCCCHHHHHhhcCCChhhHHHHHHHHH-------HcCCCCcccccCcCcCChhHHHHHHHHHHHccCC--CEEEEeC
Q psy10512 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIG-------RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP--HLLLLDE 546 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDE 546 (629)
+....+..+.+ ...+...+. -+...+ ...+..+||+. +| +++++||
T Consensus 95 -l~~~~s~~e~L---------~~~fl~~ir~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 95 -LTKGASTGVGL---------GNAFLSHVRAVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp -GCCCCCSSSSS---------CHHHHHHHTTCSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred -cccCCcHHHHH---------HHHHHHHHHHHHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 11111110000 001111111 111111 23344567653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc-C---ceEEEEecCHHHHHhhcCEEE-EEeCC-EEEEecCCH
Q psy10512 547 PTNHLDMETIDALADAINDF-E---GGLVLVSHDFRLINQVAEEIW-ICENG-KVTKWEGNI 602 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~-~---~~vi~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~ 602 (629)
|+.++|+...+..++.+... . .++ ++|+...+..+|+++. +|++| +++ +.|++
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCC
Confidence 99999999999988888776 3 343 3999999999999999 89999 775 34554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-11 Score=125.30 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=33.1
Q ss_pred cccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~ 267 (629)
.+...+||||+||+.+|++...+|+|||+||||++||+..
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 3457899999999999844333999999999999999853
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-12 Score=131.63 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=53.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEE-------------------eCCCEEEEECCCCCchHHHHHHHHcCCC--CCccE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGI-------------------DLDTRLALVGPNGAGKSTLLNLIYGDLT--PSVGM 457 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i-------------------~~Ge~i~ivG~NGsGKSTLlk~l~G~~~--p~~G~ 457 (629)
+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 578999999993 3789999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q psy10512 458 VRK 460 (629)
Q Consensus 458 i~~ 460 (629)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-12 Score=119.85 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---CCceEEE
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREVPV---PDHIDIF 147 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~p~---~g~i~i~ 147 (629)
++++|+|+||||||||+++|+|++.|. .|.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 589999999999999999999998886 5666554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-10 Score=122.83 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=56.3
Q ss_pred cCcCChhHHHHHHHHHHH--cc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 518 IRQLSDGQKCRVVFAYLA--WQ---------------APHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 518 ~~~LSgGqkqrv~lAral--~~---------------~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
.+.+||||+|-.-+|.+. ++ .-.+++|||. +-+|.+.+...++++++++--+|++|=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 567999999964444332 22 1258999999 9999999999999999999999999988 56
Q ss_pred HhhcCEEEEEe
Q psy10512 581 NQVAEEIWICE 591 (629)
Q Consensus 581 ~~~~d~i~~l~ 591 (629)
..++|.++.+-
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66778887654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-11 Score=125.55 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
...+|++++|.+++| ++|+||||||||||+++|+|...+ +.+.+.+ .++.... .......+..++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g--~~l~~~~---------~~~~~~~i~~vf 96 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKG--PELLNMY---------VGESERAVRQVF 96 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEET--TTTCSST---------THHHHHHHHHHH
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEc--HHHHhhh---------hhHHHHHHHHHH
Confidence 445889999999999 999999999999999999998654 4444432 2221110 001112222333
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeC
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDE 258 (629)
+......+.. .+.+.+..+........ .+......++.+.+|||||+||+.|++|+..+|++| ||
T Consensus 97 ~~a~~~~p~i------~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 97 QRAKNSAPCV------IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DP 161 (274)
T ss_dssp HHHHHTCSEE------EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred HHHHhcCCCe------EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence 2211110000 00111111110000000 011123456778899999999999999999999975 99
Q ss_pred CCC------------CCCHHHHHHHHHHHhh
Q psy10512 259 PTN------------HLDLDACVWLEEELKT 277 (629)
Q Consensus 259 PT~------------~LD~~~~~~l~~~L~~ 277 (629)
|+. ..|...+..+++.+..
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 863 3477888888876643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-12 Score=131.99 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=84.0
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEeeccchhcccCCCCCHH
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFARYHQHLHELLDLDISPL 484 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~~~q~~~~~~~~~~~~~ 484 (629)
+|++++|.++.| ++|+||||||||||+++|+|.+.+ |.|.+++.. .+++++|.... ....+++.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~-~~p~i~~~ 109 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKN-SAPCVIFF 109 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH-TCSEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh-cCCCeEee
Confidence 688899999999 999999999999999999999887 677776531 12222222110 01111111
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC------------CCC
Q psy10512 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN------------HLD 552 (629)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~------------~LD 552 (629)
+.+...... ..... .+.......+.+.+|||||+||+.|++|+..+|++| |||+. -.|
T Consensus 110 Deid~~~~~-r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 110 DEVDALCPR-RSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCC
T ss_pred ehhhhhhcc-cCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcC
Confidence 111111110 00000 011111223456789999999999999999999985 99964 336
Q ss_pred HHHHHHHHHHHhh
Q psy10512 553 METIDALADAIND 565 (629)
Q Consensus 553 ~~~~~~l~~~l~~ 565 (629)
...+..+++.+..
T Consensus 180 ~~~r~~il~~~~~ 192 (274)
T 2x8a_A 180 PADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7788888777653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=101.66 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=41.0
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCceEEEEecCHHH--------HHhhcCEEEEEeC
Q psy10512 537 QAPHLLLLDEPTNHL--DMETI----DALADAINDFEGGLVLVSHDFRL--------INQVAEEIWICEN 592 (629)
Q Consensus 537 ~~p~lLlLDEPT~~L--D~~~~----~~l~~~l~~~~~~vi~vsHd~~~--------~~~~~d~i~~l~~ 592 (629)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 55333 23344445667899999998775 5678999999864
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=116.39 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=103.4
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEECC-ceeEEeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNS-HLRFARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.|+++...+.+|+++.|.|++|+|||||+..|++...+..| .|.+.. ......+.+.+. .......... +..+...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~-~~~~~~~~~~-l~~g~l~ 269 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML-CAEGNINAQN-LRTGKLT 269 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH-HHHHTCCHHH-HHTSCCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH-HHHcCCCHHH-HhcCCCC
Confidence 57888878999999999999999999999999987766444 332211 000000000000 0000111111 1111111
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHHHHHHHHH
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW--QAPHLLLLDEPTNHLDM--------ETIDALADAI 563 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPT~~LD~--------~~~~~l~~~l 563 (629)
......+...++.++....... ....+|.++.+ ..++.+. .+|+++|+|+++...+. .....+...|
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~L 346 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSL 346 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 1223344555555544332222 23579999987 4555554 68999999999998743 2334444445
Q ss_pred h----hcCceEEEEec---------C--HH--------HHHhhcCEEEEEeCCEE
Q psy10512 564 N----DFEGGLVLVSH---------D--FR--------LINQVAEEIWICENGKV 595 (629)
Q Consensus 564 ~----~~~~~vi~vsH---------d--~~--------~~~~~~d~i~~l~~G~i 595 (629)
+ +++.+||+++| | +. .+.+.||.|++|+.+..
T Consensus 347 k~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 347 KALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 4 45779999999 3 22 57788999999986543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-10 Score=123.41 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN--REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV 182 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g--~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (629)
.+++.+..+..+.|.|++||||||++++|.. +..+.++.+.+...+... .....+..+..... .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~--~el~~~~~lPhl~~------------~ 224 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM--LELSVYEGIPHLLT------------E 224 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS--SGGGGGTTCTTBSS------------S
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch--hhhhhhccCCcccc------------e
Confidence 4788889999999999999999999999875 556678888876543211 00000000000000 0
Q ss_pred ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh---cccCCCChHHHHHH----------HHHHHHcc
Q psy10512 183 ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ---KKTKDFSGGWRMRI----------ALARALYV 249 (629)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~---~~~~~LSGGqrqRv----------~LAraL~~ 249 (629)
...+. ........++ ..++++|. +++..+|+.. +.. +....+||||+|+. .+|+++..
T Consensus 225 Vvtd~---~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~ 295 (512)
T 2ius_A 225 VVTDM---KDAANALRWC----VNEMERRY-KLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK 295 (512)
T ss_dssp CBCSH---HHHHHHHHHH----HHHHHHHH-HHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC
T ss_pred eecCH---HHHHHHHHHH----HHHHHHHH-HHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhcccccccc
Confidence 00010 0001111111 12344453 5777788752 221 22346888987752 35677788
Q ss_pred CCC-EEEEeCCCCCCCHHH--HHHHHHHH----hhcCCEEEEEecCHH-------HHHhhcceeEEE
Q psy10512 250 KPH-LLLLDEPTNHLDLDA--CVWLEEEL----KTYKRILVIISHSQD-------FLNGVCTNIIHL 302 (629)
Q Consensus 250 ~P~-iLLLDEPT~~LD~~~--~~~l~~~L----~~~~~tvIivsHd~~-------~l~~~~d~ii~l 302 (629)
.|. ++++||+++.+|... ...++..| +.+|.++|++||++. ...++.+||++-
T Consensus 296 lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 898 899999999988432 22222223 234679999999987 566777777653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.6e-10 Score=121.06 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
..+|+++||+|++ ++++|+|||||||||||++|+|++.|+.|++.+.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 4589999999999 99999999999999999999999999999988754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-11 Score=128.98 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=56.8
Q ss_pred cccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeE-
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNII- 300 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii- 300 (629)
..+..+||+. +| +++++|||++.+|+......++.+... +.|++ +|+...+..+|+++.
T Consensus 129 ~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~ 194 (392)
T 1ni3_A 129 AEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQ 194 (392)
T ss_dssp TCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHH
T ss_pred ceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHH
Confidence 4455577753 99 999999999999999998888877665 34543 999999999999999
Q ss_pred EEcCC-eEEEE
Q psy10512 301 HLDKR-KLKYY 310 (629)
Q Consensus 301 ~l~~G-~i~~~ 310 (629)
+|++| +++..
T Consensus 195 ~L~~G~~~~~~ 205 (392)
T 1ni3_A 195 YLTETKQPIRK 205 (392)
T ss_dssp HHHTTCSCGGG
T ss_pred HhccCCceeec
Confidence 99999 87643
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-09 Score=117.28 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=103.0
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
...|+++..-+.+|+++.|.|++|+|||||+..|++...+..| .+.+. ..+.+. .....++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~--s~E~s~------------~~l~~r~~~-- 253 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF--SLEMSA------------QQLVMRMLC-- 253 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE--ESSSCH------------HHHHHHHHH--
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE--ECCCCH------------HHHHHHHHH--
Confidence 3568888888999999999999999999999998876544334 34332 222211 000111100
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc--cCCCEEEE
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY--VKPHLLLL 256 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~--~~P~iLLL 256 (629)
.. ... +. ..+ .. ..+.. ....++.+.+..++... +.-.....+|+++.+ +.++.+. .+|+++++
T Consensus 254 ~~-~~~-~~---~~l---~~--g~l~~-~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livI 319 (454)
T 2r6a_A 254 AE-GNI-NA---QNL---RT--GKLTP-EDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVI 319 (454)
T ss_dssp HH-HTC-CH---HHH---HT--SCCCH-HHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEE
T ss_pred HH-cCC-CH---HHH---hc--CCCCH-HHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEE
Confidence 00 000 00 000 00 11111 11223334444333221 112224679999886 5566665 68999999
Q ss_pred eCCCCCCCH--------HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHHhhcceeEEEcCC
Q psy10512 257 DEPTNHLDL--------DACVWLEEELK----TYKRILVIISH---------S--QD--------FLNGVCTNIIHLDKR 305 (629)
Q Consensus 257 DEPT~~LD~--------~~~~~l~~~L~----~~~~tvIivsH---------d--~~--------~l~~~~d~ii~l~~G 305 (629)
|+|+...+. .....+...|+ +++.+||+++| | +. .+...||.|++|..+
T Consensus 320 D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 320 DYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp ECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 999998843 23344444443 56899999999 3 22 467789999999876
Q ss_pred eE
Q psy10512 306 KL 307 (629)
Q Consensus 306 ~i 307 (629)
..
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 53
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-11 Score=127.67 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=94.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCCCceEEEeecccCCCC
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCG-------RRYGLLGLNGSGKSTLLAVLGNRE----VPVPDHIDIFHLTREMPAS 156 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~L~g~~----~p~~g~i~i~~~~~~~~~~ 156 (629)
++.++++..||+..+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+.+|.+...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--------- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--------- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---------
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---------
Confidence 56678888888888999999999887 899999999999999999999976 2333322110
Q ss_pred CcchhhhhhhchHHHHHHHHHH-HHHhccC-----ChhHHHHHHHHHhhhhccC----hhhHHHHHHHHHHhCCCCchhh
Q psy10512 157 DKSALTCVMEVDEERVRLEKLA-EQLVACE-----DDESQEQLMDIYDRLDDIS----ADTAEARAANILHGLGFTKEMQ 226 (629)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~L~~lgl~~~~~ 226 (629)
...+ ...+.... ..+...+ .....+.+....... ... .......+...+..++|.. .
T Consensus 90 -~~~l---------~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~--a 156 (334)
T 1in4_A 90 -QGDM---------AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG--A 156 (334)
T ss_dssp -HHHH---------HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS-CCCC---------------CCCEEEE--E
T ss_pred -HHHH---------HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE--e
Confidence 0000 00000000 0000000 111111111111100 000 1122234555666677742 5
Q ss_pred hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcce
Q psy10512 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ 298 (629)
...+..||+|++||+.++ .+||+.+...+.++|++... ..-++|+.+.+..+|++
T Consensus 157 t~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp ESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred cCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 667789999999998654 66777677767666654310 01147898888888775
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-10 Score=116.63 Aligned_cols=100 Identities=13% Similarity=0.016 Sum_probs=59.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCce-----------eEEeeccchhc-------------
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSHL-----------RFARYHQHLHE------------- 475 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~~-----------~~~~~~q~~~~------------- 475 (629)
++..|++++|+|||||||||||++|+|+..|++|.|.+ .|.. .+++++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999987 4321 24566665421
Q ss_pred -ccCCCCCHHHHHhhc--CCChhhHHHHHHHHHHcCCCCcccccCcCcCCh
Q psy10512 476 -LLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523 (629)
Q Consensus 476 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 523 (629)
.+..++++ +++... .........+.++|+.+||......+++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11223333 322110 111123456889999999963344456677774
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-10 Score=124.12 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=96.3
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHc--CCCCCccEEEEC---Cce-eEEeeccchhcccC-CCCCHHH---HHh
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGMVRKN---SHL-RFARYHQHLHELLD-LDISPLD---YML 488 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~---~~~-~~~~~~q~~~~~~~-~~~~~~~---~~~ 488 (629)
.+++++..+..+.|+|++||||||+++.|.. +..++.|.+.+. ... .+..+...++ ... .-..+.+ .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPh-l~~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPH-LLTEVVTDMKDAANALR 237 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTT-BSSSCBCSHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCc-ccceeecCHHHHHHHHH
Confidence 3678888999999999999999999999876 555666666542 110 0111111000 000 0011111 110
Q ss_pred hcCCChhhHHHHHHHHHHcCCCCcccc--cCcCcCChhHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHHH
Q psy10512 489 QSFPEVKDREEMRKIIGRYGLTGRQQV--CPIRQLSDGQKCRV----------VFAYLAWQAPH-LLLLDEPTNHLDMET 555 (629)
Q Consensus 489 ~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPT~~LD~~~ 555 (629)
. . ....+++ .+++..+|+...... +....+|+||+|+. .+++++...|. ++++||++..+|...
T Consensus 238 ~-~-~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~ 314 (512)
T 2ius_A 238 W-C-VNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG 314 (512)
T ss_dssp H-H-HHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH
T ss_pred H-H-HHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh
Confidence 0 0 0011223 367788888643221 11236899998753 35566777888 899999999988432
Q ss_pred --HHHHHHHHh----hcCceEEEEecCHH-------HHHhhcCEEEE
Q psy10512 556 --IDALADAIN----DFEGGLVLVSHDFR-------LINQVAEEIWI 589 (629)
Q Consensus 556 --~~~l~~~l~----~~~~~vi~vsHd~~-------~~~~~~d~i~~ 589 (629)
.+.++..|. .++.++|++||+.. ...++.+||.+
T Consensus 315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 222222232 23557999999987 55677778765
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-11 Score=128.98 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=96.7
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCC-------CEEEEECCCCCchHHHHHHHHcCC----CCCccEEEECC------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLD-------TRLALVGPNGAGKSTLLNLIYGDL----TPSVGMVRKNS------ 462 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~G-------e~i~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~------ 462 (629)
++.++++..|+. ..+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 444566666643 23789999999876 899999999999999999999998 67777664322
Q ss_pred -----ceeEEeeccchhcccCCCCCHHHHHhh---cCC------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 463 -----HLRFARYHQHLHELLDLDISPLDYMLQ---SFP------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 463 -----~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
...+.++.+... +. .+..+.+.. .+. .......+...+..+++.. ...++..||+|++||
T Consensus 97 ~~~~~~~~v~~iDE~~~--l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHR--LN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGGG--CC--HHHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchhh--cC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 123445544321 11 123332211 110 0011223344555566643 234568999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCE
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~ 586 (629)
+.++ .+||+.+.+.+.+.|.+.... .-++|+.+.+..+|++
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 8655 677777777777777654211 1147888887777764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=97.40 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+.+.+|++++.+|+++++| ||++|..+++.+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=103.26 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHH---HHHhhcCCEEEEEecCHH------
Q psy10512 239 MRIALARALYVK--PHLLLLDEPTNHL----------DL----DA---CVWLE---EELKTYKRILVIISHSQD------ 290 (629)
Q Consensus 239 qRv~LAraL~~~--P~iLLLDEPT~~L----------D~----~~---~~~l~---~~L~~~~~tvIivsHd~~------ 290 (629)
+-+.++++++.. |+++++|||++.+ |+ .. ...+. ..+++++.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678878754 9999999999998 32 11 12222 233667899999999653
Q ss_pred ----------HHHhhcceeEEEcCCeEE
Q psy10512 291 ----------FLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 291 ----------~l~~~~d~ii~l~~G~i~ 308 (629)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 266789999988876654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-10 Score=114.88 Aligned_cols=127 Identities=14% Similarity=0.052 Sum_probs=70.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe-ecccCCCCCcc----hhhhhhhchHHHHHHHHHHHHHhc
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH-LTREMPASDKS----ALTCVMEVDEERVRLEKLAEQLVA 183 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 183 (629)
++..|++++|+||||||||||+++|+ +..|..|.+.+.. .+.+....... ....+.+.+..+ .+..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~--------~~~l 231 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS--------KVEA 231 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS--------SCCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC--------cCcc
Confidence 44579999999999999999999999 9999999998711 11111111000 011111100000 0000
Q ss_pred cCChhHHHHHHHHHh-------hhhc-cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 184 CEDDESQEQLMDIYD-------RLDD-ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 184 ~~~~~~~~~~~~~~~-------~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
++. .+.+++...+. .+.. ....+...++.++|+.++|.....++++..|||.+++++.|||
T Consensus 232 ~~~-lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 232 TMF-VKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGT-SCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred ccc-CCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 00011100000 1111 1222334578899999999855778899999999999999986
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-10 Score=118.43 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCCceE
Q psy10512 87 DVKIANFSITFHGCELLQDTMLEL-------------------NCGRRYGLLGLNGSGKSTLLAVLGNREV--PVPDHID 145 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p~~g~i~ 145 (629)
.|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+|++. |+.|.+.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 388999999994 7899999988 9999999999999999999999999887 8889887
Q ss_pred EE
Q psy10512 146 IF 147 (629)
Q Consensus 146 i~ 147 (629)
+.
T Consensus 115 vi 116 (308)
T 1sq5_A 115 LI 116 (308)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.9e-10 Score=113.59 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=56.7
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCc--------e--eEEeeccchhccc-CC-CCCHHHHHh
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSH--------L--RFARYHQHLHELL-DL-DISPLDYML 488 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~--------~--~~~~~~q~~~~~~-~~-~~~~~~~~~ 488 (629)
+.+|++++|+||||||||||+++|+|+..|..|.|.. .|. . ..+++.|.+.... .+ .+++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999986 331 0 1466666643211 11 3455 4331
Q ss_pred hcC----------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 489 QSF----------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 489 ~~~----------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..+ ........+.++++.++|....... ...|+.|++||
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-y~~lls~~~~~ 303 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-YVEFMTEIKDR 303 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-HHHHHHHHhhc
Confidence 111 1112234688999999997543333 35677787763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-09 Score=103.07 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=22.9
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHH-cCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY-GDLT 452 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~-G~~~ 452 (629)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999 9983
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.6e-09 Score=102.26 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=22.9
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-NREV 138 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~-g~~~ 138 (629)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999 9874
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=99.20 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=81.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
.+++|+++.|.||||||||||+..++.......|.+. |+... ......
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl--------yi~~E------~~~~~~------------------ 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA--------FIDAE------HALDPE------------------ 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE--------EEESS------CCCCHH------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE--------EEECC------CCcCHH------------------
Confidence 5789999999999999999998888765443333332 22211 000000
Q ss_pred HHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH----H---HHHHHHH--
Q psy10512 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA--PHLLLLDEPTNHL----------DM----E---TIDALAD-- 561 (629)
Q Consensus 503 ~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~--p~lLlLDEPT~~L----------D~----~---~~~~l~~-- 561 (629)
...++|+...... .....+.. +-+.++++++.. |++||+|||++.+ |. . ..+.+.+
T Consensus 105 ~a~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~ 181 (349)
T 2zr9_A 105 YAKKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMT 181 (349)
T ss_dssp HHHHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHH
Confidence 1233444311100 01112332 345677777654 9999999999998 32 1 1122222
Q ss_pred -HHhhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCEE
Q psy10512 562 -AINDFEGGLVLVSHDFR----------------LINQVAEEIWICENGKV 595 (629)
Q Consensus 562 -~l~~~~~~vi~vsHd~~----------------~~~~~~d~i~~l~~G~i 595 (629)
.+++++.+||+++|-.. .+..+||.++.++.+.+
T Consensus 182 ~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 182 GALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp HHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 23566789999999643 25678999888876544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-10 Score=116.76 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=42.4
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+++.+.|+...++++++|++++| ++|+||||||||||+++|++... .+.+.+.
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 34445565667899999999999 99999999999999999999763 4555553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-09 Score=106.61 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEe-CCeeeeEeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 87 DVKIANF-SITF-HGCELLQDTMLELNC---GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 87 ~i~i~nl-s~~y-~~~~~L~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.|+++|+ +++| ++..+|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 9999 777899999999999 9999999999999999999998853
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-10 Score=115.98 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=41.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+++.+.|++..+++++++++++| ++|+||||||||||+++|++... .+.+.+.
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 34444455556889999999999 99999999999999999999763 4555543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.4e-06 Score=100.30 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.+.+|+.+.|.||+|+|||||+..++.....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4899999999999999999999998876544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-08 Score=91.76 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
...|++++.+|+++++| ||++|..+++.+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45688999999999999 999999999988887754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-09 Score=106.20 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=42.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 463 (629)
.|+++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++.
T Consensus 9 ~l~l~~~~~~~~--------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE--------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccC--------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 578888865552 1 566666 899999999999999999999999999999987764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.9e-10 Score=118.25 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=78.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE-CC-----ceeEEeeccchhcccCCCCCHHHHHhh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK-NS-----HLRFARYHQHLHELLDLDISPLDYMLQ 489 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~-----~~~~~~~~q~~~~~~~~~~~~~~~~~~ 489 (629)
+++++++.+++|++++|+||||||||||+++|+|.. .|.+.. .. +..+++++|.... +..+.+....+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~r 233 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTTT
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHHh
Confidence 789999999999999999999999999999999954 677765 21 1123333433211 1111111111000
Q ss_pred cCCChh---hHHHHHHHHHH---------------cCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE-EeCCCC
Q psy10512 490 SFPEVK---DREEMRKIIGR---------------YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL-LDEPTN 549 (629)
Q Consensus 490 ~~~~~~---~~~~~~~~l~~---------------~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPT~ 549 (629)
...... ....+...+.. .-+...........+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 234 ~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 234 DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 010000 01223334430 1111112233456799999999999888899999988 999987
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-10 Score=106.12 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
.+.+|++|+.+|+++++| ||+||..++..+++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-09 Score=105.46 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=43.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
.|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+|++.|++|.|.+.+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4889998876642 456666 89999999999999999999999999999887653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-08 Score=94.54 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=77.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 508 (629)
+++|+|+|||||||+.++|+++ |...++... .... +. .+. ...+..+...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~-----------~~--~~~---~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VARE-----------VV--AKD---SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHH-----------TT--CSS---CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHH-----------Hc--cCC---hHHHHHHHHHhC
Confidence 6899999999999999999983 433222100 0000 00 011 123455666777
Q ss_pred CCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CceEEEEecCHHHH--HhhcC
Q psy10512 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGGLVLVSHDFRLI--NQVAE 585 (629)
Q Consensus 509 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~-~~~vi~vsHd~~~~--~~~~d 585 (629)
... ..|.|+.+|..++..+..+|..+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||
T Consensus 56 ~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 531 14688999999999888887654333 3456677777777777654 34678888987665 57799
Q ss_pred EEEEEeC
Q psy10512 586 EIWICEN 592 (629)
Q Consensus 586 ~i~~l~~ 592 (629)
.+++++-
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9998853
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-10 Score=116.03 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~ 468 (629)
.+++++.+.|.. +.++++++|.+++| ++|+||||||||||+++|++.+. .|.|.+++.. .+.+
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345666666642 34789999999999 99999999999999999999885 6777765421 1122
Q ss_pred eccchhcccCCCCCHHHHHhh--cCCCh---hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQ--SFPEV---KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|.... ....+++++.+.. ..... .........+.. .+..|||||+||+.|++++..+|++
T Consensus 124 ~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~-- 190 (278)
T 1iy2_A 124 LFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI-- 190 (278)
T ss_dssp HHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--
T ss_pred HHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--
Confidence 2222210 0111122221100 00000 000111112211 2357999999999999999999987
Q ss_pred EeCCC
Q psy10512 544 LDEPT 548 (629)
Q Consensus 544 LDEPT 548 (629)
||++.
T Consensus 191 ld~~l 195 (278)
T 1iy2_A 191 LDPAL 195 (278)
T ss_dssp SCHHH
T ss_pred CCHhH
Confidence 67653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-08 Score=111.80 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=91.4
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc-cEEEECCc------eeEEeeccchhccc----------
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV-GMVRKNSH------LRFARYHQHLHELL---------- 477 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~------~~~~~~~q~~~~~~---------- 477 (629)
.+++++++.+..|+.++|+||||||||||+++|++++++.. |.+.+.+. ..+.++++.....+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~ 127 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKS 127 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999999999987 66655331 22344332210000
Q ss_pred ----------CCCCCHHHHHhh-cC-----CCh-hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 478 ----------DLDISPLDYMLQ-SF-----PEV-KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 478 ----------~~~~~~~~~~~~-~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
....+...++.. .. +-. ........++..+... . ...+.+|+|++|++..++....++.
T Consensus 128 ~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~-~~~g~~~~g~~~~i~~g~~~~a~~g 203 (604)
T 3k1j_A 128 QESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---P-FQSGGLGTPAHERVEPGMIHRAHKG 203 (604)
T ss_dssp HTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---C-C----CCCCGGGGEECCHHHHTTTS
T ss_pred chhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---h-hhcCCccccccccccCceeeecCCC
Confidence 000000000000 00 000 0001122232222211 1 1225799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 541 LLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+|+|||... |++.....|.+.|.+
T Consensus 204 vL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 204 VLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred EEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999988 899999999999974
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.6e-09 Score=102.95 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=35.9
Q ss_pred CeEEEEEE-EEEEcCCCCeEeeeeeEEEeC---CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 398 PVIMVQNV-SFRYSDDGPWIYRNLEFGIDL---DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 398 ~~l~~~~l-~~~y~~~~~~il~~vsl~i~~---Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
++|+++|+ ++.|+.+ ..+|+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999323 3489999999999 99999999999999999999998653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-08 Score=113.47 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=94.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-CceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-DHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
++++.-||...+++++++.+..|+.++|+||||+|||||+++|++...+.. +.+.+... ....... .+..+... .
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~--~~~~~~p-~i~~~p~g-~ 113 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN--PEDENMP-RIKTVPAC-Q 113 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC--TTCTTSC-EEEEEETT-H
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC--cccccCC-cEEEEecc-h
Confidence 344556788889999999999999999999999999999999999987765 33333221 1111110 00000000 0
Q ss_pred HHHHHHHHHHHHhc-cCChhHHHHH--HHHHhhhh--cc---Ch---hhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 170 ERVRLEKLAEQLVA-CEDDESQEQL--MDIYDRLD--DI---SA---DTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 170 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~--~~---~~---~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
....+......... .......... ..+...+. +. .. .........++..+.. .......+|+|++
T Consensus 114 ~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~----~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 114 GRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH----DPFQSGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----CCC----CCCCGG
T ss_pred HHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----chhhcCCcccccc
Confidence 00000000000000 0000000000 00000000 00 00 0000011222222211 1122357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
|++..++....++.+|+|||... |++.....|...|.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 899999999998874
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.5e-08 Score=93.71 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
|+++++|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 6788899999999999999999999999985
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.9e-08 Score=93.41 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--HhhcceeEEEc
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-KRILVIISHSQDFL--NGVCTNIIHLD 303 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-~~tvIivsHd~~~l--~~~~d~ii~l~ 303 (629)
.|.|+.+|..+++.++.+|+.+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888755443 4456777777777777654 45788888987654 56789888885
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-08 Score=92.92 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=108.07 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=58.0
Q ss_pred hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-CEEEE-EecCHHHHHhhcceeE
Q psy10512 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN-HLDLDACVWLEEELKTY--K-RILVI-ISHSQDFLNGVCTNII 300 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~-~LD~~~~~~l~~~L~~~--~-~tvIi-vsHd~~~l~~~~d~ii 300 (629)
+..+.-+|+|+.+|..++++++.++++||+|||.. +||......++..+... + .+|++ .||+.+.+..+++...
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC
Confidence 34567799999999999999999999999999997 99988766666555433 2 35666 4899988888877543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=107.82 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=56.0
Q ss_pred CcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-ceEEE-EecCHHHHHhhcCE
Q psy10512 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDALADAINDF--E-GGLVL-VSHDFRLINQVAEE 586 (629)
Q Consensus 517 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l~~~l~~~--~-~~vi~-vsHd~~~~~~~~d~ 586 (629)
.+..+|+|+.+|..+++.++.++++||+|||.. +||......++..+... . ..|++ .|||.+.+..+++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 456789999999999999999999999999996 99988776666665543 2 35666 49998888777764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-07 Score=88.36 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=33.9
Q ss_pred EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 104 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
++++|.+.+| +++|+||||||||||+++|.+++.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999987766544
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-07 Score=98.04 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=77.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC-----------CCccEEEECCcee-----EEeeccchhcccCCCCCHHHHHhh---
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT-----------PSVGMVRKNSHLR-----FARYHQHLHELLDLDISPLDYMLQ--- 489 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~--- 489 (629)
+++|+|++|||||||++.|+|... |+.|.|.+++..- .|++.+.+..........++.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 499999999999999999999876 5668888776311 122211110000000000111100
Q ss_pred -----cCCChh--h---HHHHHHHHHHcCCCCcc---cccCcCcCChhHHHHHHHH----HHH-ccCCCEEEEeCCCCCC
Q psy10512 490 -----SFPEVK--D---REEMRKIIGRYGLTGRQ---QVCPIRQLSDGQKCRVVFA----YLA-WQAPHLLLLDEPTNHL 551 (629)
Q Consensus 490 -----~~~~~~--~---~~~~~~~l~~~gl~~~~---~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPT~~L 551 (629)
...... . ...+.+++..+++.... ....+..+|+|+++++.++ +.+ ..+|++ +|||++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 001101 1 12345677887765432 1224567899988888877 555 434444 899999
Q ss_pred CHHHHHHHHHHHhhc
Q psy10512 552 DMETIDALADAINDF 566 (629)
Q Consensus 552 D~~~~~~l~~~l~~~ 566 (629)
|..+.+.|.+.|.+.
T Consensus 337 ~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 337 KRTNLELLRDKIYQL 351 (364)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999999888653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-07 Score=100.00 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=70.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.+.++++.++.| +.|+||+|+|||||+++|++.... .+.++. .. ++. ..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is--~~----------~~~-~~~---- 89 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHIS--GS----------DFV-ELF---- 89 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEE--GG----------GTT-TCC----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCC--HH----------HHH-HHH----
Confidence 466677777777 889999999999999999985421 011110 00 000 000
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHhh
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP----------TNHLDMETIDALADAIND 565 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------T~~LD~~~~~~l~~~l~~ 565 (629)
++ +|+++.|..|++|....|.+|++||+ +++.|.+....+.+++..
T Consensus 90 ----------------------~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 90 ----------------------VG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp ----------------------TT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred ----------------------hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 00 26788899999999999999999999 446676655555555543
Q ss_pred c-------CceEEEEecCHHHH
Q psy10512 566 F-------EGGLVLVSHDFRLI 580 (629)
Q Consensus 566 ~-------~~~vi~vsHd~~~~ 580 (629)
+ +..||.+||+.+.+
T Consensus 146 ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGS
T ss_pred HhccCCCCCEEEEEecCChhhh
Confidence 2 23578889988654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-07 Score=87.86 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=35.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~ 457 (629)
++++|.+.+| +++|+||||||||||+++|++++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 7889999998 99999999999999999999998887664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-07 Score=101.36 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHhh---c----CCEEEEEecCHHHHH
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPT----------NHLDLDACVWLEEELKT---Y----KRILVIISHSQDFLN 293 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT----------~~LD~~~~~~l~~~L~~---~----~~tvIivsHd~~~l~ 293 (629)
|++++|..+++|....|.||++||+. ++.|......+..+|.. + +..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67888999999999999999999994 35666555444444432 2 457888999987553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=95.68 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC-CceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHH
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 506 (629)
-.++|+|++|+|||||++.|+|... ..|..... ....++.+.+.. . .+..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~-----~-----------------------~~~l 218 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGY-----F-----------------------RYQI 218 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETT-----E-----------------------EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecC-----c-----------------------eEEE
Confidence 3689999999999999999998752 11111000 000111111000 0 0011
Q ss_pred cCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CceEEEEe--cCHH
Q psy10512 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD-EPTNHLDMETIDALADAINDF--EGGLVLVS--HDFR 578 (629)
Q Consensus 507 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPT~~LD~~~~~~l~~~l~~~--~~~vi~vs--Hd~~ 578 (629)
++..+... .++..+|+|++|++. +.+...++-++++| +|++++|......+...+... +..+|+|. ||+.
T Consensus 219 ~Dt~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 219 IDTPGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EECTTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EeCCCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11122111 345689999998776 55555677789999 999999999887777776653 46788888 8874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-08 Score=93.88 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=41.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. .+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 477888888888889999999999999999999999999999999875 56776
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-08 Score=98.13 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
...|++|+.+|.++++| ||+||..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999999988887754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-07 Score=86.94 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.0
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977665
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-07 Score=94.94 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=30.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
|++..|++++|+|||||||||||++|+|+..|+.|.+.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 456689999999999999999999999999999999887
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-06 Score=88.49 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=78.7
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
+-|+.+.--+.+|+.+.|.|++|+|||||+.-|+.......+.+-++ ..+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f--SlEms-------------------------- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF--SLEMS-------------------------- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE--ESSSC--------------------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eCCCC--------------------------
Confidence 44666655789999999999999999999987765322211222221 11111
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
..+...++......+.+. .+.+ ..||+++.+|+..|...+.+++++|.|+|+
T Consensus 86 ------------------------~~ql~~Rlls~~~~v~~~-~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~ 137 (338)
T 4a1f_A 86 ------------------------AEQLALRALSDLTSINMH-DLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSY 137 (338)
T ss_dssp ------------------------HHHHHHHHHHHHHCCCHH-HHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTT
T ss_pred ------------------------HHHHHHHHHHHhhCCCHH-HHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 000111111122222221 1221 479999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHH-hhc-CCEEEEEec
Q psy10512 261 NHLDLDACVWLEEEL-KTY-KRILVIISH 287 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L-~~~-~~tvIivsH 287 (629)
. ++.........+ ++. +..+|||-|
T Consensus 138 ~--si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 138 V--RIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp C--CHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred C--cHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4 455544444434 345 567887754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-06 Score=87.56 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=37.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCHHHHHhhcce
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKT------YKRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~------~~~tvIivsHd~~~l~~~~d~ 298 (629)
.+|.||+|||+... |......|...+.+ .+.++|++||+.++...+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 45889999999876 99888888887743 356899999998766554443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.8e-06 Score=87.39 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCC--EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 426 LDT--RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 426 ~Ge--~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
.+. .+.|.||+|+|||||++.+++.+.+..+ ..+.++... ...+. ...+..+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~------~~~~~-------------~~~~~~l 94 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGF------IYRNF-------------TAIIGEI 94 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETT------TCCSH-------------HHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCc------cCCCH-------------HHHHHHH
Confidence 345 8999999999999999999998876531 111111100 01111 1223344
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHH-HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc------CceEEEEecC
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL-AWQAPHLLLLDEPTNHLDMETIDALADAINDF------EGGLVLVSHD 576 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra-l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~------~~~vi~vsHd 576 (629)
+..++... +....+.++......... -...|.+|+|||+... |......|...+.++ +..+|++||+
T Consensus 95 ~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 95 ARSLNIPF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHTTCCC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHhCccC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 55555421 112334443332221111 1245889999999876 998888888887543 4578899999
Q ss_pred HHHHHhhc
Q psy10512 577 FRLINQVA 584 (629)
Q Consensus 577 ~~~~~~~~ 584 (629)
.++...+.
T Consensus 169 ~~~~~~l~ 176 (389)
T 1fnn_A 169 DAVLNNLD 176 (389)
T ss_dssp THHHHTSC
T ss_pred chHHHHhC
Confidence 87665443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-07 Score=86.29 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~ 140 (629)
++|.+|++++|+||||||||||+++|++.+.|.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468899999999999999999999999987654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.8e-06 Score=86.60 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=47.6
Q ss_pred cccCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CCEEEEEe--cCHH
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKPHLLLLD-EPTNHLDLDACVWLEEELKT-Y-KRILVIIS--HSQD 290 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P~iLLLD-EPT~~LD~~~~~~l~~~L~~-~-~~tvIivs--Hd~~ 290 (629)
.++..+|+|++|++. +.+...++-|+++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55555677889999 99999999987666655544 3 67788888 8864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-07 Score=94.24 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
+++.+|++++|+||||+|||||+++|+|...|..|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 677899999999999999999999999999998898876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-07 Score=90.64 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE--EECC
Q psy10512 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV--RKNS 462 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i--~~~~ 462 (629)
+|++..++. ..+.+..++...+|++++|+||||||||||+++|++.+. ..|.+ ++++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 355655532 225677788889999999999999999999999999987 67876 5443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.5e-06 Score=88.14 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCchh---hhcccCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 211 RAANILHGLGFTKEM---QQKKTKDFSGGWRMRIALA----RAL-YVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 211 ~~~~~L~~lgl~~~~---~~~~~~~LSGGqrqRv~LA----raL-~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
.+.++|+.+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|||++|..+...|++.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 345667766653211 1234667898988888877 665 444554 89999999999988887754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-06 Score=83.47 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=24.4
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34899999999999999999999999999999998753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.2e-06 Score=86.98 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=33.1
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc--CCCCCccEEEE
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGMVRK 460 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~ 460 (629)
+|++++++++ .|+|+|++|||||||++.|+| ++++..|.+..
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 6888888887 899999999999999999999 66777777653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-06 Score=83.02 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVR 459 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~ 459 (629)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999998874 445553
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-06 Score=88.38 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=76.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-|+.......+. +.|+. ++++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fS--------lEms~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFS--------LEMSAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEE--------SSSCHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEe--------CCCCHHHHH--------
Confidence 356655578999999999999999999998887654322222 23322 223322211
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc-CceEEEE
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI-NDF-EGGLVLV 573 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l-~~~-~~~vi~v 573 (629)
.++.... .++...... -+.||+++.+|+..|...+.+++++|.|+|+.. +.........+ .++ +..+|+|
T Consensus 91 --~Rlls~~--~~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 91 --LRALSDL--TSINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp --HHHHHHH--HCCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred --HHHHHHh--hCCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 1111122 233221111 257999999999999999999999999998654 44433333333 333 3455555
Q ss_pred e
Q psy10512 574 S 574 (629)
Q Consensus 574 s 574 (629)
-
T Consensus 163 D 163 (338)
T 4a1f_A 163 D 163 (338)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.6e-07 Score=89.69 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=29.2
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCCc
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDH 143 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~---g~~~p~~g~ 143 (629)
..++.+.+ ++|++++|+||||||||||+++|+ |+..|+.|.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 33444443 789999999999999999999999 876554443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-07 Score=98.77 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred EeeeeeEEEeCCC------EEEEECCCCCchHHHHHHHHcCCC--CCccEEEECCceeEEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNLEFGIDLDT------RLALVGPNGAGKSTLLNLIYGDLT--PSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~vsl~i~~Ge------~i~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
.+.+++..+..+. ++||+||||||||||+++|.+++. |+.|.+.+-....+ +........ ... . .
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f-~~~~~~l~~--~~~--~--~ 147 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF-LYSNAKLEK--QGL--M--K 147 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG-BCCHHHHHH--TTC--G--G
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc-ccchhhhhh--HHH--H--h
Confidence 4555555555554 899999999999999999999987 45666533211000 000000000 000 0 0
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~ 553 (629)
..+++...+...+.+.+..+--.......|. +|.+..+|+..+...+..|+|+|++.|..-.|.
T Consensus 148 ~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~--yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNAIKSGQRNVRIPV--YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHHHHTTCSSEEEEE--EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hccCcccccHHHHHHHHHhhhccccccccch--hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 0112322334445555554432211122333 444444444333445678999999999887765
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.03 E-value=4e-05 Score=80.42 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.+++|+++.|+||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999999887766655
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=81.98 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=29.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
|++|+++.|.||||||||||+..++....+..|.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 67999999999999999999999988665544544
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00014 Score=90.60 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=25.7
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+++|+++.|.||.|+|||||+.-++....
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999877765443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=83.08 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=29.9
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+..+...+|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 334566789999999999999999999999987 7777654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=82.04 Aligned_cols=37 Identities=35% Similarity=0.320 Sum_probs=24.9
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3799999999999999999999999999999999766
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-06 Score=82.03 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=28.1
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++-+..++.++|++++|+||||||||||+++|++.+ |.+.+.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~ 59 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAE 59 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEE
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEc
Confidence 333344677899999999999999999999999865 655553
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-07 Score=96.35 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=44.8
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhCCCCC--CCCceEE
Q psy10512 92 NFSITFHGCELLQDTMLELNCGR------RYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDI 146 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~L~g~~~p--~~g~i~i 146 (629)
.|++.|++...|.+++..+..+. ++||+||||||||||+++|.+++.+ ..|.+.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 45666777788888998888887 9999999999999999999998763 4455544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.6e-06 Score=80.55 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
+|++++|+||||||||||+++|.+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-06 Score=87.63 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=33.4
Q ss_pred eCCCEEEEECCCCCchHHHHHHHH---cCCCCCccEEE
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIY---GDLTPSVGMVR 459 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~ 459 (629)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999986
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=81.35 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=82.07 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-+++|+++.|.||+|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.2e-05 Score=84.39 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
++.+++++|||||||||++..|++.+.+..+.|.+-.. +. . .....+....+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~--------D~-------~-----------r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA--------DV-------Y-----------RPAAYDQLLQLGN 149 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE--------CC-------S-----------CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec--------Cc-------c-----------chhHHHHHHHHHH
Confidence 46799999999999999999999999887776654210 00 0 0011122333344
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHhh
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT-NH--LDMETIDALADAIND 565 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT-~~--LD~~~~~~l~~~l~~ 565 (629)
..|++..... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|.....++...+..
T Consensus 150 ~~gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 150 QIGVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp TTTCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred hcCCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 4455321110 111111222334556656688888888887 45 677666666655443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=81.21 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhcCCE--EEEEec
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE-ELKTYKRI--LVIISH 287 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~-~L~~~~~t--vIivsH 287 (629)
||+++.+|+..|...+.++++++.|+|+ +++........ +..+.+.. +|||-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 45555443333 33444666 888876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=84.06 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.6
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
..+|++++++++ .++|||++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358999999998 9999999999999999999994
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.88 E-value=4e-06 Score=88.29 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q psy10512 250 KPHLLLLDEPTNHLD---LDACVWLEEELKT---YKRILVIISHSQDFLNGV 295 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD---~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~ 295 (629)
.|.||++||+....+ ......+.+.+.. .+.++|++||+.++...+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 388999999988663 4445555555532 246899999998654433
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.4e-06 Score=87.27 Aligned_cols=129 Identities=12% Similarity=0.258 Sum_probs=68.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 504 (629)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.... . .+. ......++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~---~---~~~-------------~~~~~~i~ 98 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQ---I---DTP-------------YRVLADLL 98 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHH---H---CSH-------------HHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCC---C---CCH-------------HHHHHHHH
Confidence 346789999999999999999999887654321 01111221100 0 011 11122333
Q ss_pred HHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCC---HHHHHHHHHHHhhc---CceEEEEecC
Q psy10512 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLLDEPTNHLD---METIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 505 ~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPT~~LD---~~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
..++... +....+..+..... ..++ ...|.+|++||+....+ ......+.+.+..+ +..+|++||+
T Consensus 99 ~~l~~~~-----~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 99 ESLDVKV-----PFTGLSIAELYRRL-VKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp TTTSCCC-----CSSSCCHHHHHHHH-HHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHhCCCC-----CCCCCCHHHHHHHH-HHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 3344321 11223444322211 1222 23388999999987663 34455555555432 4578999998
Q ss_pred HHHHHhh
Q psy10512 577 FRLINQV 583 (629)
Q Consensus 577 ~~~~~~~ 583 (629)
..+...+
T Consensus 173 ~~~~~~~ 179 (386)
T 2qby_A 173 VKFVDLL 179 (386)
T ss_dssp GGGGGGC
T ss_pred CChHhhh
Confidence 8654433
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.8e-05 Score=79.62 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.+++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-06 Score=79.22 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=27.5
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-06 Score=79.20 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=26.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
++|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-06 Score=81.22 Aligned_cols=38 Identities=24% Similarity=0.092 Sum_probs=33.9
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
..+|.+++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 46789999999999999999999999998888887653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.83 E-value=6.5e-05 Score=80.77 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
++.+++++|||||||||++..|++.+.+..+.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999877665555544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.2e-05 Score=78.11 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.4e-06 Score=81.66 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=32.3
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+...++|++++|+|+||||||||+++|+|+ .|.|.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 345578999999999999999999999998 67776654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-06 Score=82.33 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=32.8
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 106 TMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 106 vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
-+.+.++|++++|+|+||||||||+++|+|. .|.+.+..
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4456679999999999999999999999996 57776653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=9.6e-06 Score=88.39 Aligned_cols=57 Identities=11% Similarity=-0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 292 (629)
.+.+...++...+.+++++|+......-......++.+.|++.+..+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 467777788888888998888776554334455688888888888888888776644
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-06 Score=93.62 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=69.6
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCceeEEeeccchhcccCCCCCHHHHHhh-cCCChhhH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-SFPEVKDR 497 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~ 497 (629)
|+.+.++..++|+|+||+|||||++.|++...+ ..|+| .++... .+....+.-.. .+......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~-------------~d~~~~e~~~giti~~~~~~ 68 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT-------------TDYTPEAKLHRTTVRTGVAP 68 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS-------------SCCSHHHHHTTSCCSCEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc-------------ccCCHHHHhcCCeEEecceE
Confidence 456788999999999999999999999977654 55665 222100 00011000000 00000000
Q ss_pred HHHHHHHHHcCCCCcccccCcC-cCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecC
Q psy10512 498 EEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHD 576 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd 576 (629)
+..-+..-...+.|.. .+ .......+-..++-+|++| |+.+++..+... +..+...+..+|++.|.
T Consensus 69 ------~~~~~~~~nliDTpG~~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NK 135 (665)
T 2dy1_A 69 ------LLFRGHRVFLLDAPGYGDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTK 135 (665)
T ss_dssp ------EEETTEEEEEEECCCSGGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEEC
T ss_pred ------EeeCCEEEEEEeCCCccch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecC
Confidence 0000000001111100 11 1122333345678899999 999999887744 44555667788889998
Q ss_pred HHH
Q psy10512 577 FRL 579 (629)
Q Consensus 577 ~~~ 579 (629)
++.
T Consensus 136 iD~ 138 (665)
T 2dy1_A 136 LDK 138 (665)
T ss_dssp GGG
T ss_pred Cch
Confidence 875
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.79 E-value=7.9e-06 Score=78.51 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999876
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-06 Score=89.43 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=34.3
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 588999999999999999999999999999999985
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4.1e-06 Score=86.92 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=40.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367788888999999999999999999999999999988888653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.6e-06 Score=79.24 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=32.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
..+|.+++|+|+||||||||+++|++.+.+..|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999877666776554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=77.38 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.3
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44455899999999999999999999998753
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-05 Score=82.12 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=44.5
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
.+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.+.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 456777787654 678888 899999999999999999999999988776666654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.74 E-value=5.7e-07 Score=92.63 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhhc----Cc--eEEEEecCHHHHHhhcCEEE
Q psy10512 521 LSDGQKCRVVFAYLAW--QAPHLLLLDEPTNHLDMET-IDALADAINDF----EG--GLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 521 LSgGqkqrv~lAral~--~~p~lLlLDEPT~~LD~~~-~~~l~~~l~~~----~~--~vi~vsHd~~~~~~~~d~i~ 588 (629)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.++ +. .+.+++|+-.-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4556665 68999999 8999866 55555554433 32 34556677666666665543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.8e-05 Score=85.74 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHh---hcCCEEEEEecCH
Q psy10512 249 VKPHLLLLDEPTNHLDL-DACVWLEEELK---TYKRILVIISHSQ 289 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~-~~~~~l~~~L~---~~~~tvIivsHd~ 289 (629)
.+|+|||+||+....+. .....|+..+. +.+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 56666666654 3467899999973
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.9e-06 Score=83.04 Aligned_cols=145 Identities=15% Similarity=0.177 Sum_probs=83.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~ 468 (629)
.+++++.+.|.. +.+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.. .+.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 455666666642 23789999999999 99999999999999999999875 6777765421 1112
Q ss_pred eccchhcccCCCCCHHHHH---hhcCCC--hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYM---LQSFPE--VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|.... ....+.+++.+ ...... ........+.+. .....|||||+||+.|++++..+|++
T Consensus 100 ~~~~~~~-~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~l~g~~~~~~~i~~a~t~~p~~-- 166 (254)
T 1ixz_A 100 LFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI-- 166 (254)
T ss_dssp HHHHHTT-SSSEEEEEETHHHHHC---------CHHHHHHHH----------HHHHHHHTCCTTCCEEEEEEESCGGG--
T ss_pred HHHHHHh-cCCeEEEehhhhhhhcccCccccccchHHHHHHH----------HHHHHHhCCCCCCCEEEEEccCCchh--
Confidence 2222110 00111111111 100000 000011111111 12346899999999999999999987
Q ss_pred EeCCCCC------------CCHHHHHHHHHHH
Q psy10512 544 LDEPTNH------------LDMETIDALADAI 563 (629)
Q Consensus 544 LDEPT~~------------LD~~~~~~l~~~l 563 (629)
||++.-- .|.+.+..+++.+
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 6776532 2455666665543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.2e-06 Score=90.62 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.8
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEE-ECC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVR-KNS 462 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~-~~~ 462 (629)
.+.+|++++|+|+||||||||+++|+|.+.|+.| .+. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999987 674 655
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.3e-05 Score=74.99 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999875 6666654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.9e-05 Score=78.57 Aligned_cols=130 Identities=8% Similarity=0.097 Sum_probs=74.3
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++....- .| ..+.|+. .+++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~s--------lE~s~~~l~-------- 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHS--------LEMGKKENI-------- 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEE--------SSSCHHHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEE--------CCCCHHHHH--------
Confidence 36666656899999999999999999998877643211 11 1222322 222222111
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhhcCce--EEE
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA-DAINDFEGG--LVL 572 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~-~~l~~~~~~--vi~ 572 (629)
.++.... .++........-..||+++.+|+..|...+.++++++.|+|. +++....... .+..+.+.. +|+
T Consensus 113 --~R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 113 --KRLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp --HHHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred --HHHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 233211111110128999999999998888888999999886 4444433333 333334445 776
Q ss_pred Eec
Q psy10512 573 VSH 575 (629)
Q Consensus 573 vsH 575 (629)
|-|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 655
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.65 E-value=6.8e-07 Score=93.72 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=50.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++.+++++.|+...+++++++.+..|.+++|+|+||+|||||++.|++.+.+..+.+.+.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 556677777777788999999999999999999999999999999998876666666553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=73.13 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CEEEEEecCHH
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL----------DACVWLEEELKTYK-------RILVIISHSQD 290 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~----------~~~~~l~~~L~~~~-------~tvIivsHd~~ 290 (629)
++++..|..++.+...+|.+|++||+.+.++. .....+...+.... ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 35677788888888889999999999887653 22334455554431 34677888754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.7e-05 Score=85.89 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhhc---CceEEEEecC
Q psy10512 537 QAPHLLLLDEPTNHLDM-ETIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~-~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
.+|++||+||+..-.+. .+.+.+...++.+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999887764 5677777777653 4578888987
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=70.82 Aligned_cols=30 Identities=43% Similarity=0.538 Sum_probs=24.7
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.++|+|++|+|||||++.|+|...+.++..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 589999999999999999999887766643
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.63 E-value=1e-05 Score=83.86 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=39.4
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999999999999999888777777654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.2e-05 Score=73.75 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.9
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEec
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KRILVIISH 287 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~tvIivsH 287 (629)
..+|+++|+..+.+.++.....++..++..+ ..++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3478999999999999988777777665433 247888888
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.62 E-value=2e-05 Score=73.40 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999999999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.60 E-value=2e-05 Score=73.47 Aligned_cols=27 Identities=33% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.|.+++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.5e-05 Score=70.60 Aligned_cols=29 Identities=45% Similarity=0.636 Sum_probs=24.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+.++++.+| +.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345566665 99999999999999999986
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=73.16 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
++..+.|.||+|+|||||++.|++.... . +.++. .. .
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~--------~~------------~------------ 89 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNIS--------AA------------S------------ 89 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEE--------ST------------T------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEee--------HH------------H------------
Confidence 4567899999999999999999985421 0 00000 00 0
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------c
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----------ETIDALADAINDFE-------G 568 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~----------~~~~~l~~~l~~~~-------~ 568 (629)
+. ... .-++++..+..+..+...+|.+|++||+.+-++. .....++..+.... .
T Consensus 90 ---l~----~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 90 ---LT----SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ---TS----SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ---Hh----hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 000 1246777888888888899999999999876653 23344555555542 2
Q ss_pred eEEEEecCHH
Q psy10512 569 GLVLVSHDFR 578 (629)
Q Consensus 569 ~vi~vsHd~~ 578 (629)
.||.+|++.+
T Consensus 161 ~vi~~tn~~~ 170 (297)
T 3b9p_A 161 VVLAATNRPQ 170 (297)
T ss_dssp EEEEEESCGG
T ss_pred EEEeecCChh
Confidence 3667788643
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.57 E-value=6.9e-06 Score=86.14 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=46.5
Q ss_pred eEEEEEEEEEEcCCCCeEee--------------eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYR--------------NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~--------------~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-+.++||++.|+... .+++ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 478999999997654 4788 899999999999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=2.9e-05 Score=72.54 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999853
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.55 E-value=9.7e-06 Score=85.02 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 87 DVKIANFSITFHG-CELLQ--------------DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++|+++.|+. +..|+ |+++.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778899999975 56888 899999999999999999999999999998753
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.9e-05 Score=70.28 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=25.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34556666654 899999999999999999873
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5.9e-06 Score=94.19 Aligned_cols=45 Identities=4% Similarity=-0.094 Sum_probs=35.2
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 292 (629)
+-..++-+|++| |++++++.+..++. .+...+.++|++.|.++..
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAWT-VAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEECGGGC
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHHH-HHHHccCCEEEEecCCchh
Confidence 335688899999 99999998875544 4556788899999998753
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0007 Score=71.04 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+++|+++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999987764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.49 E-value=2e-05 Score=87.47 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=33.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceE
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HID 145 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~ 145 (629)
.+.+|++++|+|+||||||||+++|+|.+.|..| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 5779999999999999999999999999888775 564
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.39 E-value=1.3e-05 Score=83.94 Aligned_cols=45 Identities=27% Similarity=0.151 Sum_probs=40.4
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|.|.+
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 678888888999999999999999999999999999887777654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=2.1e-05 Score=76.68 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC---CCCccEEEE
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL---TPSVGMVRK 460 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 460 (629)
+.+++|+||+||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 566776654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=6.4e-05 Score=72.37 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
-++.+|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=5.8e-05 Score=72.66 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=27.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
-=++++|.+++|+|++|||||||+++|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999975
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0015 Score=68.53 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+++|+++.|.|++|+|||||...++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999988777543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.33 E-value=7.9e-05 Score=73.35 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=31.0
Q ss_pred eeeeeEEEe---CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEE
Q psy10512 417 YRNLEFGID---LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459 (629)
Q Consensus 417 l~~vsl~i~---~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 459 (629)
|.++||.+. .|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 666677666 8999999999999999999999999987 55553
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=6.9e-05 Score=70.37 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=27.1
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 45
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=69.86 Aligned_cols=29 Identities=45% Similarity=0.636 Sum_probs=24.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 455666665 99999999999999999885
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=3.6e-05 Score=75.05 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.+++|+||+||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=7.5e-05 Score=78.35 Aligned_cols=35 Identities=37% Similarity=0.444 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+.+++|+|++|||||||++.|+|.+.|..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 45689999999999999999999988887777654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.23 E-value=9.6e-05 Score=72.73 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=27.4
Q ss_pred eEeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 103 LQDTMLELN---CGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 103 L~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
|.++||.+. .|.+++|.|++||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 566666665 8999999999999999999999987765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=2.3e-05 Score=82.61 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=38.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
.+.+.|++..|+.+.++++++|.| +|||+||+|||||++.|.|...+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 588899999998888999999987 99999999999999999886544
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0023 Score=65.98 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00042 Score=70.93 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678889999999999999999999854
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00019 Score=69.13 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=25.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
+.+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4455666655 499999999999999999885
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.13 E-value=5.3e-05 Score=84.32 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=44.0
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
++++...|.. ..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.|...
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 4455555531 23577788877 799999999999999999999999998877776543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00014 Score=76.28 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
.+.+++|+|++|||||||++.|+|...+..+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 5678999999999999999999998777767766543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00011 Score=71.09 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=33.9
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc--EEEEC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--MVRKN 461 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G--~i~~~ 461 (629)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34678999999999999999999999999887777 55544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00036 Score=71.43 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678889999999999999999999875
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00025 Score=67.02 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++|++...|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00024 Score=66.60 Aligned_cols=29 Identities=34% Similarity=0.338 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
.+|++++|+|++||||||++++|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999999986544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.04 E-value=1.2e-05 Score=89.67 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=40.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
++++.+.|+...++.++++++ +|+.++|+||||+|||||+++|++...+
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 345555665556788888888 8999999999999999999999998654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00058 Score=69.70 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
..+.|+||+|+|||||+++|++...+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 47899999999999999999987644333
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=67.55 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+..+.|.||+|+|||||++.|++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999998754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00026 Score=67.71 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0002 Score=76.87 Aligned_cols=42 Identities=19% Similarity=-0.028 Sum_probs=37.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
++++|+ ++++++|+|+|||||||++..|++.+.+..|.|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 566776 889999999999999999999999999988888653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00088 Score=68.31 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4689999999999999999999887766544
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0003 Score=67.32 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00035 Score=67.03 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
...+|.+++|+||+|||||||.+.|...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999998765
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0028 Score=65.35 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988774
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00038 Score=65.73 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++|+....|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00026 Score=66.82 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
...+|.+++|+|++||||||+.+.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999887766655
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00014 Score=69.41 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=30.2
Q ss_pred EEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 406 SFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 406 ~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
++.|++-. .+++++||..+.. .++|+|++|+|||||++.+++
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34554433 3788888887776 589999999999999999987
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00076 Score=65.19 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFR 578 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~ 578 (629)
..|.+|++||.-. ||......|...+.+.. ..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4578999999755 88898999998887653 35788887754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00054 Score=63.68 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0006 Score=64.42 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=20.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+++++++..+.. .++|+|++|+|||||++.+++
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899988776 789999999999999999997
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.86 E-value=6.1e-05 Score=77.16 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=42.9
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 90 IANFSITFHGCELLQD-TMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 90 i~nls~~y~~~~~L~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
.++++..|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.+.+..+.+.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456666676543 56 888876 99999999999999999999999877665666543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00015 Score=74.31 Aligned_cols=42 Identities=19% Similarity=-0.011 Sum_probs=36.4
Q ss_pred ee-eeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 418 RN-LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 418 ~~-vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..|.|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 677766 8999999999999999999999999888777765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00056 Score=72.53 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=32.5
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC-----------CCCCccEEEECC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD-----------LTPSVGMVRKNS 462 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~ 462 (629)
.+..|..++|+|+||+|||||++.|+|. +.|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 677788877654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.84 E-value=5.7e-05 Score=78.73 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=40.6
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 92 NFSITFHGCELLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
+++..||...+++.++..+..|++ +.|.||+|+|||||++++++.+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344456777789999999999998 999999999999999999986543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00056 Score=63.55 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 578899999999999999999998653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0042 Score=67.12 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.6
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCCEEEEEec
Q psy10512 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW-LEEELKTYKRILVIISH 287 (629)
Q Consensus 231 ~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~-l~~~L~~~~~tvIivsH 287 (629)
..||..+.+|+.-|...+.+.++.+.|+|. +++..... +..+.++.+..+|||-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 469999999999888778888899998764 44544443 33344455667777754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00013 Score=69.65 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=31.3
Q ss_pred EEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 94 SITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 94 s~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|++. .+++++||..+.+ .++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4456553 5889999998888 5889999999999999999874
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.01 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999976653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00025 Score=77.80 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=44.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.+++++...|.. +.+|+++++.+++| +.|+||||+|||||+++|++... .+.+.+++
T Consensus 41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 445555555532 23688999999998 99999999999999999999875 56676654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00063 Score=65.24 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356789999999999999999999998764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.001 Score=68.57 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4578999999999999999999876543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0022 Score=62.93 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHH-HHHHhhcC-c-eEEE-EecCHHHHHhhc
Q psy10512 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDAL-ADAINDFE-G-GLVL-VSHDFRLINQVA 584 (629)
Q Consensus 521 LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l-~~~l~~~~-~-~vi~-vsHd~~~~~~~~ 584 (629)
.+.|...+... ..+.+.++||+||.-. ++|......+ ...+.... . .+++ .|.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 35566666543 3588999999999966 6888776433 44444433 2 3433 356655555544
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0002 Score=78.48 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=36.5
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+.
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 345688899999999 99999999999999999999753 3444443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=71.94 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=29.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC------------CCccEEEECCc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT------------PSVGMVRKNSH 463 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~ 463 (629)
.++|+|+||+|||||++.|+|... |..|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 699999999999999999999864 56677777764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00098 Score=61.24 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|++|+|||||++.|.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0052 Score=66.40 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=76.5
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+++.|.|++|+|||||+.-|+.......| ..+.|+. ..++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~s--------lE~~~~~---------- 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYS--------LEMPAAQ---------- 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEE--------SSSCHHH----------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEE--------CCCCHHH----------
Confidence 36666656899999999999999999998888765432222 1122221 1222211
Q ss_pred hHHHHHHHH-HHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCceEEEE
Q psy10512 496 DREEMRKII-GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA-LADAINDFEGGLVLV 573 (629)
Q Consensus 496 ~~~~~~~~l-~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~-l~~~l~~~~~~vi~v 573 (629)
-...++ ...++...... -+.||..+.+|+.-|...+...++.+.|+|. +++..... +..+..+.+..+|+|
T Consensus 244 ---l~~R~~~~~~~i~~~~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 244 ---LTLRMMCSEARIDMNRVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp ---HHHHHHHHHTTCCTTTCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEE
T ss_pred ---HHHHHHHHHcCCCHHHHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111222 23455432221 2579999999998888777788888888764 44444333 333344455566666
Q ss_pred ec
Q psy10512 574 SH 575 (629)
Q Consensus 574 sH 575 (629)
-+
T Consensus 317 D~ 318 (444)
T 2q6t_A 317 DY 318 (444)
T ss_dssp EC
T ss_pred cC
Confidence 54
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00044 Score=65.17 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999988765443444
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00085 Score=65.23 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
.+..+.|.||+|+|||||++.++.........+.+-....+........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL------------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG-------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH-------------------------------
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH--HHHHHHHHhhc---Cce-EEEEecC
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET--IDALADAINDF---EGG-LVLVSHD 576 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~--~~~l~~~l~~~---~~~-vi~vsHd 576 (629)
..+.+|.+|++|| ...++... ...+...+... +.. +|++|+.
T Consensus 100 ----------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 100 ----------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp ----------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ----------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.001 Score=64.22 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~ 290 (629)
.+|.+|++||.-. ||......|...+.+. +..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999766 7888888888888764 356888888765
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0002 Score=74.68 Aligned_cols=36 Identities=33% Similarity=0.241 Sum_probs=32.2
Q ss_pred eeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q psy10512 102 LLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67778888899998 9999999999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00067 Score=64.09 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=21.1
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+++++++..+.. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=60.98 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00093 Score=62.60 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00027 Score=68.24 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=28.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 3457889999999999999999999987654444
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00089 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSV 455 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~ 455 (629)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00055 Score=70.13 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhh----cCC--EEEEEecCHHHHHhhcceeE
Q psy10512 233 FSGGWRMRIALARALY--VKPHLLLLDEPTNHLDLDA-CVWLEEELKT----YKR--ILVIISHSQDFLNGVCTNII 300 (629)
Q Consensus 233 LSGGqrqRv~LAraL~--~~P~iLLLDEPT~~LD~~~-~~~l~~~L~~----~~~--tvIivsHd~~~l~~~~d~ii 300 (629)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 888886 5566666 78999999 8999765 4444444432 343 45556687777777777665
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0056 Score=59.72 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcceeEEEc
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHS----------QDFLNGVCTNIIHLD 303 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd----------~~~l~~~~d~ii~l~ 303 (629)
+|+++++||--. |+.+....+ ..|.+.+.+||++-|+ ...+..+||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 877654444 4555668999999994 344667999998875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=68.41 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999997643
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.002 Score=67.43 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999997664
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0035 Score=63.00 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999998865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00087 Score=64.00 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00097 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999974
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=61.56 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=20.7
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=65.13 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999873
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00027 Score=73.58 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.8
Q ss_pred EeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCC
Q psy10512 416 IYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 416 il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56778888899998 99999999999999999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00016 Score=76.16 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=35.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~ 457 (629)
.+.+.+++..|+. ..++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5778888888753 23688888876 999999999999999999876655444
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00099 Score=63.62 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.022 Score=59.73 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+++|+++.|.|+.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=61.87 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
..|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=61.04 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0059 Score=61.32 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=64.27 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999974
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=70.41 Aligned_cols=28 Identities=36% Similarity=0.606 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+..|..++|||+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457788999999999999999999997
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=69.34 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999999888777777754
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.017 Score=59.07 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--H-----------HH-H-------HHHHHHhhcCCEEEEEecC
Q psy10512 235 GGWRMRIALARAL--Y--VKPHLLLLDEPTNHLD-L--D-----------AC-V-------WLEEELKTYKRILVIISHS 288 (629)
Q Consensus 235 GGqrqRv~LAraL--~--~~P~iLLLDEPT~~LD-~--~-----------~~-~-------~l~~~L~~~~~tvIivsHd 288 (629)
-++++.+.++.+| + .+|+++++|=-++..- . + .+ + .|..++++.+.++|+|-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656677666 3 3699999998777641 0 0 11 1 1223456678999999997
Q ss_pred HH
Q psy10512 289 QD 290 (629)
Q Consensus 289 ~~ 290 (629)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00096 Score=62.62 Aligned_cols=27 Identities=33% Similarity=0.424 Sum_probs=23.9
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
.+++|+|++|||||||++.|.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999886543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0012 Score=65.68 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=23.5
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.++++.++.| +.|+||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 34444555555 8899999999999999999854
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00027 Score=73.58 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=36.7
Q ss_pred eEeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 415 WIYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
.+++.++..|..|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 367888888999988 999999999999999999998766544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=68.95 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.++|||+||+|||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 799999999999999999999753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=59.07 Aligned_cols=22 Identities=32% Similarity=0.123 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=67.32 Aligned_cols=106 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEECCCCCchHHHHHHHHcC------CCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD------LTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
+.|.||+|+|||||++.|++. ....--.+.......+..+.+........................
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 132 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCP-------- 132 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCC--------
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHH
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFR 578 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~ 578 (629)
++.+|++|| ...|+......|.+.+.+. ...+|++|++..
T Consensus 133 ----------------------------------~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 ----------------------------------PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp ----------------------------------SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----------------------------------CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0021 Score=60.32 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999988654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.029 Score=60.21 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35689999999999999999999776643
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.011 Score=63.70 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HhhcCCE--EEEEec
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE-LKTYKRI--LVIISH 287 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~-L~~~~~t--vIivsH 287 (629)
|+..+.+|+.-|...+.+.+++|.|+|. +++......... .++.+.. +|||-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888888888777788899999874 677665544433 3445666 887765
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0015 Score=64.85 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=23.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++++.++.| +.|+||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444444 88999999999999999998764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=58.69 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0017 Score=63.91 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0035 Score=58.71 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
|.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=57.75 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy10512 115 RYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L 133 (629)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0027 Score=67.40 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=34.0
Q ss_pred CeeeeEeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 99 GCELLQDTMLELN---CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 99 ~~~~L~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+.+++-|. +... .+..++|+||+|||||||++.|.+...+..+.+.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44555555 3222 567899999999999999999987665555555443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.05 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998886544
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0023 Score=63.59 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.5
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
...+.++.|+|++||||||+.+.|+..+. .|.+.+++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 34567899999999999999999998764 23455444
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=61.58 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.-+++|+||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0031 Score=58.55 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy10512 115 RYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~ 134 (629)
+++|+|++||||||+.+.|+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.011 Score=64.12 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 524 Gqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
.+.+....+...+.+++++|+......-......++.+.+++.+..+|+|-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888888997777666544333445678888888777888877765544
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.004 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|-++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998643
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=57.22 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=18.3
Q ss_pred EEEEECCCCCchHHHHHHH
Q psy10512 429 RLALVGPNGAGKSTLLNLI 447 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l 447 (629)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0061 Score=63.87 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCchHHHHHHHHc-----------CCCCCccEEEECC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYG-----------DLTPSVGMVRKNS 462 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~~~ 462 (629)
|-.++|||.+|+|||||++.|+| -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3457778776644
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+-+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 629 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-21 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-24 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-18 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 0.003 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 104 bits (261), Expect = 8e-26
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 24/217 (11%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I + +VSF+Y+D+ I +++ I+ +A VG +G GKSTL+NLI + G +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 460 KN---------SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ LR +L + + +L P D EE+ +
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNIL-FSDTVKENILLGRPTATD-EEVVEAAKMANAH 134
Query: 511 GRQQVCPI----------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
P +LS GQK R+ A + P +L+LDE T+ LD+E+ +
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 561 DAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+A++ ++V+H I A++I + ENG +
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHI 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 87.9 bits (218), Expect = 5e-20
Identities = 52/266 (19%), Positives = 100/266 (37%), Gaps = 42/266 (15%)
Query: 77 GSLAVHPKSRDVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134
G+ + K + I + S ++ E +L+D L + G +G++G GKSTL+ ++
Sbjct: 6 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
Query: 135 NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM 194
I I + + +R + ++
Sbjct: 66 RFYDVTSGQILIDG-------------HNIKDFLTGSLR------NQIGLVQQDNILFSD 106
Query: 195 DIYD--RLDDISADTAEA-RAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIALA 244
+ + L +A E AA + + F + Q + SGG + R+++A
Sbjct: 107 TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHL 302
R P +L+LDE T+ LDL++ ++E L R +I++H + I+ +
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVI 225
Query: 303 DKRKLKYYGGNYEAFCKTRLELLENQ 328
+ + G T EL+ Q
Sbjct: 226 ENGHIVETG--------THRELIAKQ 243
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 2e-25
Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 27/216 (12%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
V+ +Q+V+ L + L LVGPNGAGKSTLL + G +T G +
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSI 55
Query: 459 R---------KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
+ + L R + + Y+ + E + + G L
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 115
Query: 510 TGRQQVCPIRQLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADA 562
+ QLS G+ RV A A A LLLLDEP N LD+ AL
Sbjct: 116 DDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 563 INDFEG---GLVLVSHDFRLINQVAEEIWICENGKV 595
++ +V+ SHD + A W+ + GK+
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (189), Expect = 2e-16
Identities = 49/226 (21%), Positives = 69/226 (30%), Gaps = 29/226 (12%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
E+ G L+G NG+GKSTLLA + I
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQ----------------FAGQ 60
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
E KLA ++ ++ L D N + G +
Sbjct: 61 PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG 120
Query: 228 KKTKDFSGGWRMRIALARALY-------VKPHLLLLDEPTNHLDLDACVWLEE---ELKT 277
+ T SGG R+ LA + LLLLDEP N LD+ L++ L
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 180
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLE 323
+V+ SH + L K+ G E L
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLA 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (255), Expect = 6e-25
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 23/217 (10%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +NV+F Y RN+ I +ALVG +G+GKST+ +LI G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 460 KNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ H LR + L D + + E RE++ +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTEEYSREQIEEAARMAYAM 132
Query: 511 GRQQVCP----------IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
LS GQ+ R+ A + +L+LDE T+ LD E+ A+
Sbjct: 133 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192
Query: 561 DAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A+++ + ++++H I + A+EI + E+G +
Sbjct: 193 AALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGII 228
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 1e-22
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 39/266 (14%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G + + D++ N + T+ G E L++ L++ G+ L+G +GSGKST+ +++
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 134 GNREVPVPDHIDI--FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191
HI + L AS ++ + V Q V +D
Sbjct: 62 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVS--------------QNVHLFNDTVAN 107
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALA 244
+ Y R ++ S + E AA + + + F +M + SGG R RIA+A
Sbjct: 108 NI--AYARTEEYSREQIE-EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHL 302
RAL +L+LDE T+ LD ++ ++ L + R ++I+H + I+ +
Sbjct: 165 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVV 223
Query: 303 DKRKLKYYGGNYEAFCKTRLELLENQ 328
+ + G T ELL
Sbjct: 224 EDGIIVERG--------THSELLAQH 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (254), Expect = 6e-25
Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 6/229 (2%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N F + L + +N G ++G NGSGKSTL+ V+ +
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKL--AEQLVACEDDESQEQLMDIYDRLDDISA 205
+ + ++ + L+++ E L+ E + L ++ +
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ +A IL L + +K + SGG + + RAL P ++++DEP +
Sbjct: 125 EEMVEKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 266 DACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ + K +II H D + ++ + ++ G
Sbjct: 184 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 98.1 bits (244), Expect = 1e-23
Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 34/228 (14%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ +N+ + + ++ ++GPNG+GKSTL+N+I G L G V
Sbjct: 4 ILRTENIVKYF--GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 459 ------------RKNSHLRFARYHQHLHELLDLDI----------------SPLDYMLQS 490
+ H R Q L ++ + + L Y
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E + E+ KI+ L+ +LS GQ V P ++++DEP
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180
Query: 551 LDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
+ + + + + +G +++ H ++ + +++ NG++
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 101 bits (253), Expect = 8e-25
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 13/234 (5%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V++ + F +++ LE+ G LLG +G GK+T L ++ E P I I
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
P ++ + Q A + + +L +
Sbjct: 64 DKLVADPEKGIFVPPKDRDIA--------MVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ R + LG T E+ +K ++ SGG R R+AL RA+ KP + L+DEP ++LD
Sbjct: 116 IDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 268 CVWLEEE----LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
V + E + + ++H Q + I +++ L+ G E +
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 89.6 bits (222), Expect = 8e-21
Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 25/219 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-- 456
+ + +V + + R + + + L+GP+G GK+T L +I G PS G
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 457 -----MVRKNSHLRFARYHQHLHELLDLDISPLDYM-----------LQSFPEVKDREEM 500
+V F ++ + +M L+ P + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---ID 557
R++ GLT P R+LS GQ+ RV + P + L+DEP ++LD + +
Sbjct: 121 REVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 558 ALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
A + G + V+HD + + I + G +
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 2e-24
Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 20/233 (8%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++V+++ R I + + F I+ L+GPNGAGK+T L +I + PS G+V
Sbjct: 3 VVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 460 KNSHLRFARYHQHLHEL--------LDLDISPLDYM-----LQSFPEVKDREEMRKIIGR 506
H+ + ++ ++Y+ + + E + +
Sbjct: 61 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 120
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI--- 563
GL + + + S G +++ A P L +LDEPT+ LD+ + +
Sbjct: 121 AGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 179
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616
+ +++ SH+ + + + I + NG + G + + KE +A+ ++E
Sbjct: 180 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTI-VETGTVEELKERYKAQNIEE 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.7 bits (235), Expect = 1e-22
Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 17/242 (7%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V + + E+L+ E+ G +GL+G NG+GK+T L ++ P + +F
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ L + + + + + S+
Sbjct: 63 GKNVVEEPHEVRKLISYLP-------------EEAGAYRNMQGIEYLRFVAGFYASSSSE 109
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
E G E + + +S G ++ +ARAL V P L +LDEPT+ LD+
Sbjct: 110 IEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 168
Query: 268 CVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLEL 324
+ + LK + +++ SH+ + +C I + + G E + + +
Sbjct: 169 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
Query: 325 LE 326
+E
Sbjct: 229 IE 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 2e-24
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 403 QNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 37 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 462 SHLRFARYHQHL--HELLDLDISPLDYMLQSFPEVKDR-EEMRKIIGRYGLTGRQQVCPI 518
+ F + + + I + Y + V + + I
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 156
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSH 575
LS GQ+ R+ A ++ L LLD P +LD+ T + + ++ +LV+
Sbjct: 157 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 216
Query: 576 DFRLINQVAEEIWICENGKV 595
+ + A++I I G
Sbjct: 217 KMEHL-RKADKILILHQGSS 235
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.8 bits (220), Expect = 4e-20
Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 43/259 (16%)
Query: 63 EADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLN 122
E +L + + G +V ++ G +L++ L + G + G
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFSHLC--LVGNPVLKNINLNIEKGEMLAITGST 71
Query: 123 GSGKSTLLAVLGNREVPVPDHIDI-------FHLTREMPASDKSALTCVMEVDEERVRLE 175
GSGK++LL ++ I + MP + K + + DE R +
Sbjct: 72 GSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYK-- 129
Query: 176 KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235
+ AC+ + + + + + + SG
Sbjct: 130 ---SVVKACQLQQDITKFAEQDNTVLG-------------------------EGGVTLSG 161
Query: 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL---KTYKRILVIISHSQDFL 292
G R RI+LARA+Y L LLD P +LD+ + E + ++++ + L
Sbjct: 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 221
Query: 293 NGVCTNIIHLDKRKLKYYG 311
I+ L + +YG
Sbjct: 222 R-KADKILILHQGSSYFYG 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 4e-24
Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 20/215 (9%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 460 -----------KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK------ 502
+ Q L I + K +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562
I LS GQ+ R+ A P +L+ DE T+ LD E+ +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 563 INDFEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
++ G ++++H + + A+ I + E GK+
Sbjct: 182 MHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKI 215
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (188), Expect = 3e-16
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 24/246 (9%)
Query: 87 DVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
D+ N + +L + L + G G++G +GSGKSTL ++ R P++
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-QRFYI-PENG 58
Query: 145 DIFHLTREMPASDKSALT-CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
+ ++ +D + L V V ++ V L + ++ + + + +L
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL--- 115
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
A A G+ + ++ SGG R RIA+ARAL P +L+ DE T+ L
Sbjct: 116 ----AGAHDFISELREGY-NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 264 DLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321
D ++ + + R ++II+H + II ++K K+ G
Sbjct: 171 DYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQG--------KH 221
Query: 322 LELLEN 327
ELL
Sbjct: 222 KELLSE 227
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 98.4 bits (245), Expect = 8e-24
Identities = 43/217 (19%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ ++V F Y DD I R++ F ++ +A GP+G GKST+ +L+ P+ G +
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 459 RKN----SHLRFARYHQHL----HELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ ++ + + + + + + + E++ +++
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 511 GRQQVCPIR----------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+ P + ++S GQ+ R+ A + P +L+LDE T LD E+ +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 561 DAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A++ G ++++H I A++I+ E G++
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQI 215
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 82.2 bits (203), Expect = 3e-18
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 29/235 (12%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD---HIDIFHLTREMPASD 157
++L+D E G +G GKST+ ++L R ID + +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLENW 74
Query: 158 KSALTCVMEVDE--ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
+S + V + E L L DE Q++D+ +
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE----------- 123
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
+ ++ SGG R R+A+ARA P +L+LDE T LD ++ +++ L
Sbjct: 124 -NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 276 KTYK--RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQ 328
+ R ++I+H + I ++K ++ G EL+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSG--------KHNELVATH 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 98.3 bits (245), Expect = 9e-24
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 19/235 (8%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+VK+ N + F + L + G LLG +G GK+T L ++ E P I
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
++ V Q A + + + ++ D
Sbjct: 66 GDRDVTYLPPKDRNISMVF--------------QSYAVWPHMTVYENIAFPLKIKKFPKD 111
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
+ R L E+ + SGG R R+A+ARA+ V+P +LL+DEP ++LD
Sbjct: 112 EIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 267 ACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
V + E+K K + ++H Q + I +++ +L G E +
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 93.3 bits (232), Expect = 5e-22
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
+ ++N++ R+ + L I L L+GP+G GK+T L +I G P+ G +
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 459 ---RKNSHLRFARYH-----QHLHELLDLDISP---LDYMLQSFPEVKDREEMRKIIGRY 507
R ++L + Q + + ++ FP+ + + +R
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAIND- 565
+ P QLS GQ+ RV A + + P +LL+DEP ++LD + A+ I
Sbjct: 125 QIEELLNRYP-AQLSGGQRQRVAVARAIVVE-PDVLLMDEPLSNLDAKLRVAMRAEIKKL 182
Query: 566 -FEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
+ + + V+HD + + I + G++
Sbjct: 183 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 96.4 bits (240), Expect = 6e-23
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 7/230 (3%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ + + + G E+L+ L+ G ++G +GSGKST L + E P I I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IV 61
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLA--EQLVACEDDES-QEQLMDIYDRLDDIS 204
+ DK V + ++ R+ +L Q + E +M+ ++ +S
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 121
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A RA L +G + Q K SGG + R+++ARAL ++P +LL DEPT+ LD
Sbjct: 122 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 181
Query: 265 LDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ + ++ +V+++H F V +++I L + K++ G
Sbjct: 182 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 86.0 bits (213), Expect = 2e-19
Identities = 51/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ V ++ RY G + + + ++++G +G+GKST L I PS G +
Sbjct: 3 LHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 460 -------------------KNSHLRFARYH-----QHLHELLDL----DISPLDYMLQSF 491
+ LR R QH + + ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
+ RE K + + G+ R Q LS GQ+ RV A P +LL DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 552 DMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
D E + + + EG +V+V+H+ V+ + GK+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 94.2 bits (234), Expect = 1e-22
Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 16/196 (8%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ ++++S Y D P + + I+ + GPNG GK+TLL I L P G +
Sbjct: 3 LEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 460 KNSH------LRFARYHQHLHELLDLDISP-LDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
N + + + + + L + + ++ E+ + +
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG- 569
++ + +LS G RV A + +LD+P +D ++ + +I + E G
Sbjct: 120 KK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177
Query: 570 -LVLVSHDFRLINQVA 584
++ + +
Sbjct: 178 VIISSREELSYCDVNE 193
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.1 bits (187), Expect = 2e-16
Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 26/218 (11%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
+I + S+ + +L+ + + G G NG GK+TLL + P+ I
Sbjct: 4 EIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
+ L + V + + L ++ ++MD + ++
Sbjct: 63 VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE------- 115
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC 268
+L +KK + S G R+ LA L V + +LD+P +D D+
Sbjct: 116 ------VLD--------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 269 VWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDK 304
+ + + ++ +VIIS ++ C +L K
Sbjct: 162 HKVLKSILEILKEKGIVIISSREEL--SYCDVNENLHK 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 93.1 bits (231), Expect = 6e-22
Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 23/243 (9%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
++ + + + ++ L++ G+ L+G NG+GK+T L+ + I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
+ + V E R +L + +M Y+R D
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVY---------ENLMMGAYNRKDKEGIKRD 118
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---L 265
++ L KE ++ SGG + +A+ RAL +P LL++DEP+ L +
Sbjct: 119 LEWIFSLFPRL---KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELL 325
+ +++ ++++ + V L+ ++ G ELL
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG--------KASELL 227
Query: 326 ENQ 328
+N+
Sbjct: 228 DNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 90.0 bits (223), Expect = 7e-21
Identities = 41/216 (18%), Positives = 85/216 (39%), Gaps = 21/216 (9%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
V+ VQ++ Y + ++ + + L+G NGAGK+T L+ I G + G
Sbjct: 5 IVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 458 VRKNSHLRFARYHQHLHELLDLDISP----------LDYMLQSFPEVKDREEMRKIIGRY 507
+ N + ++ + + + ++ KD+E +++ +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
Query: 508 -----GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562
L R + LS G++ + P LL++DEP+ L + + +
Sbjct: 123 FSLFPRLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 563 INDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
I EG ++LV + +VA ++ E G++
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 1e-21
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V++ N + + + +D L+++ G +G +G GKSTLL ++ E + I
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
E +D + + Q A S + M +L +
Sbjct: 61 ----EKRMNDTPPAERGVGMV----------FQSYALYPHLSVAENMSFGLKLAGAKKEV 106
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
R + L + +K K SGG R R+A+ R L +P + LLDEP ++LD
Sbjct: 107 INQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 268 CVWLEEE----LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
V + E K R ++ ++H Q + I+ LD ++ G
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 213
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 86.2 bits (213), Expect = 1e-19
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 19/212 (8%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +QNV+ + + + +++ I + VGP+G GKSTLL +I G T + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 460 ---------KNSHLRFARYHQHLH---ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
+ Q L + L + + + ++
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAIN 564
L P + LS GQ+ RV P + LLDEP ++LD + ++
Sbjct: 119 QLAHLLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177
Query: 565 DFEGGLV-LVSHDFRLINQVAEEIWICENGKV 595
G + V+HD +A++I + + G+V
Sbjct: 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.7 bits (225), Expect = 3e-21
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 29/230 (12%)
Query: 400 IMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++NV+ Y IY +N+ I ++++GP+G+GKST+LN+I P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 458 VR---------KNSHLRFARYHQ------------HLHELLDLDISPLDYMLQSFPEVKD 496
V + L R + L L ++++ + + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556
R+ + + L R QLS GQ+ RV A P ++L D+PT LD +T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 557 DALADAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602
+ + + E G +V+V+HD + + E I ++G+V + E +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV-EREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.3 bits (224), Expect = 4e-21
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 16/233 (6%)
Query: 88 VKIANFSITFHGCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K+ N + T+ E L++ L + G ++G +GSGKST+L ++G + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TE 59
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDD 202
+++ + D LT + V + L L A E +L I+
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE----NVELPLIFKYRGA 115
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S + RA L + K SGG + R+A+ARAL P ++L D+PT
Sbjct: 116 MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 263 LDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
LD + + LK V+++H + II+L +++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVEREE 227
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 90.5 bits (224), Expect = 4e-21
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I+V+NVS + N+ I+ R ++GP+GAGK+T + +I G PS G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 460 ----------KNSHLRFARYHQHLHELLDL-------DISPLDYMLQSFPEVKDREEMRK 502
K R + + L + + + R+ + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDAL 559
+ + P R+LS Q+ RV A + P LLLLDEP ++LD ++ AL
Sbjct: 124 VAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 560 ADAINDFEGG-LVLVSHDFRLINQVAEEIWICENGKV 595
+ G L++VSHD I +A+ + + GK+
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.0 bits (189), Expect = 2e-16
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 16/236 (6%)
Query: 88 VKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+ + N S F ++ L + + + G R+G+LG +G+GK+T + ++ + VP +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD--VPSTGE 61
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
++ R + ++ K + R + Q A + + + + +S
Sbjct: 62 LYFDDRLVASNGK-------LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK 114
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ R + L + ++ SG + R+ALARAL P LLLLDEP ++LD
Sbjct: 115 EEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 266 DACVWLEEE----LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L+++SH + + + L K KL G + +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 86.5 bits (214), Expect = 1e-19
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDD 202
+ + D LT + E + + R + + Q + + + LD+
Sbjct: 62 VLV----------DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
D + R +L +G + + SGG + R+A+ARAL P +LL DE T+
Sbjct: 112 TPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 263 LDLDAC----VWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
LD L++ + +++I+H D + +C + + +L E F
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 85.3 bits (211), Expect = 3e-19
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I + N++ + I N+ + ++G +GAGKSTL+ + P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 458 VR------------KNSHLR--FARYHQHLHELLDLDISPLDYM-----LQSFPEVKDRE 498
V + + R QH + L + + L + P+ + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---MET 555
+ +++ GL + P LS GQK RV A P +LL DE T+ LD +
Sbjct: 120 RVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 556 IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
I L IN G ++L++H+ ++ ++ + + + NG++
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (202), Expect = 5e-18
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 28/230 (12%)
Query: 393 GKIPPP----VIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
G + P ++ Q+VSF Y + + + L F + ALVGPNG+GKST+ L+
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 448 YGDLTPSVGMVR---------KNSHLR--FARYHQHLHELLDLDISPLDYMLQSFPEVKD 496
P+ G + ++ +L A Q + Y L P +++
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 497 REEMRKIIGRYGLT-----GRQQVC--PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
G + G QLS GQ+ V A + P +L+LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 550 HLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LD + L ++ + ++L++ L+ + A+ I E G +
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAI 229
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.6 bits (196), Expect = 3e-17
Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 32/263 (12%)
Query: 77 GSLAVHPKSRDVKIANFSITFHGCE---LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G L V+ + S + +LQ L G L+G NGSGKST+ A+L
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 134 GNREVPVPDH---IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQ 190
+D L + + V + Q+ E+
Sbjct: 61 -QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP-----------QVFGRSLQENI 108
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGL-GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+ +++I+A ++ A + + GL + SGG R +ALARAL
Sbjct: 109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKR 305
KP +L+LD+ T+ LD ++ + +E+ L + Y R +++I+ + +I+ L+
Sbjct: 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGG 227
Query: 306 KLKYYGGNYEAFCKTRLELLENQ 328
++ G T +L+E +
Sbjct: 228 AIREGG--------THQQLMEKK 242
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.0 bits (188), Expect = 6e-17
Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 15/169 (8%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYML 488
++ + G G GK+TL+ I L + ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG------- 54
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+ +K++G YG+ + + ++++DE
Sbjct: 55 KKKIFSSKFFTSKKLVGSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 549 NHLDM--ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ D + ++D +V R ++ + +EI +
Sbjct: 110 KMELFSKKFRDLVRQIMHDPNVNVVATIPI-RDVHPLVKEIRRLPGAVL 157
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.8 bits (115), Expect = 2e-07
Identities = 24/215 (11%), Positives = 48/215 (22%), Gaps = 42/215 (19%)
Query: 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL 174
+ + G G GK+TL+ + V
Sbjct: 2 KIIITGEPGVGKTTLVKKI--------------------------------------VER 23
Query: 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234
E+ E R+ + + +
Sbjct: 24 LGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEEL 83
Query: 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV--WLEEELKTYKRILVIISHSQDFL 292
+ A A + ++++DE + + + +V +D
Sbjct: 84 AIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH 143
Query: 293 NGVCTNIIHLDKRKLKYYG-GNYEAFCKTRLELLE 326
+ I L L N + + L LLE
Sbjct: 144 P-LVKEIRRLPGAVLIELTPENRDVILEDILSLLE 177
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 3e-16
Identities = 43/210 (20%), Positives = 84/210 (40%), Gaps = 17/210 (8%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I ++++S ++ + NL ++ ++GP GAGK+ L LI G P G +
Sbjct: 1 MIEIESLSRKW---KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 459 RKNSHLR---------FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
+ A +Q+ +++ ++KD + + +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAINDF 566
P LS G++ RV A P +LLLDEP + LD E + ++
Sbjct: 118 EHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 567 EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
++ ++HD +A+ I + +GK+
Sbjct: 177 NKLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 68.2 bits (166), Expect = 2e-13
Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I + S + L + L++ G + +LG G+GK+ L ++ VP I +
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
V ++ E+ Q + + ++ ++ R+ I
Sbjct: 61 G-------------KDVTDLSPEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K 103
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
R + L + + + SGG + R+ALARAL P +LLLDEP + LD
Sbjct: 104 DPKRVLDTARDLKI-EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 268 CVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
E L + + I+H Q + I + KL G
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.1 bits (179), Expect = 4e-15
Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHLRFAR------ 468
N++F + D L+GP GAGKS L LI G + P G VR N + L R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 469 --YHQHLHELLDLDISPLDYMLQSFPEVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQ 525
+ L E R EM + +G L R +LS G+
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR----KPARLSGGE 131
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAINDFEGGLVL-VSHDFRLIN 581
+ RV A P LLLLDEP + +D + + +L V+HD
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 582 QVAEEIWICENGKV 595
+A+E+ + NG++
Sbjct: 192 MLADEVAVMLNGRI 205
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.5 bits (141), Expect = 3e-10
Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 37/225 (16%)
Query: 107 MLELNCGRRYG----------------LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLT 150
L++ +R G LLG G+GKS L ++ P + +
Sbjct: 2 FLKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
Query: 151 REMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA 210
++ + V + L + +
Sbjct: 62 ITPLPPERRGIGFVPQ-----------DYALFPHLSVYRNIAYGLRN-----VERVERDR 105
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
R + LG + +K SGG R R+ALARAL ++P LLLLDEP + +DL
Sbjct: 106 RVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 271 LEEE----LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L EE + + ++ ++H + + + ++ G
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 424 IDLDTRL-ALVGPNGAGKSTLL---NLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479
I R+ A+VGPNG+GKS ++ ++G+ + +R +
Sbjct: 20 IGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKK--ELRASEKFDMIFAGSENLPPAGS 77
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ 520
L + RE R Y L G +
Sbjct: 78 AYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIR 118
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.6 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.19 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.16 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.03 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.83 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.81 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.77 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.2 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.08 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.78 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.41 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.24 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.01 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.91 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.87 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.82 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.8 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.73 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.72 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.56 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.52 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.5 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.5 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.44 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.42 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.41 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.35 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.31 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.31 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.26 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.22 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.22 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.21 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.17 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.15 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.12 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.07 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.06 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.04 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.99 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.9 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.88 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.87 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.83 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.83 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.79 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.77 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.77 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.77 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.76 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.76 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.74 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.72 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.69 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.68 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.66 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.66 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.66 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.65 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.62 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.6 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.57 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.57 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.56 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.55 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.55 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.53 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.51 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.46 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.44 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.42 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.41 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.4 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.37 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.36 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.34 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.33 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.33 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.32 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.31 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.31 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.31 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.29 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.28 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.26 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.26 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.23 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.22 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.21 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.18 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.11 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.04 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.03 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.03 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.02 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.02 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.97 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.96 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.93 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.92 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.9 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.79 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.78 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.78 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.77 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.74 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.73 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.73 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.69 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.68 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.67 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.66 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.62 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.61 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.6 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.53 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.52 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.5 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.5 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.49 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.46 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.46 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.45 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.43 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.34 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.3 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.28 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.27 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.26 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.23 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.21 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.21 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.2 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.19 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.18 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.16 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.16 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.13 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.12 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.11 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.1 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.1 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.1 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.07 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.07 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.05 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.98 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.92 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.89 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.83 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.76 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.69 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.67 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.64 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.62 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.6 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.57 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.52 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.5 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.49 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.49 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.44 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.4 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.37 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.32 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.28 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.23 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.21 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.2 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.2 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.2 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.18 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.17 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.14 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.13 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.04 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.03 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.98 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.98 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.98 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.94 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.91 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.88 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.8 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.78 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.75 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.71 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.65 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.64 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.6 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.58 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.58 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.58 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.53 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.53 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.51 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.48 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.47 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.4 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.39 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.3 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.27 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.26 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.19 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.14 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.13 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.05 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.02 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.96 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.94 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.92 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.89 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.87 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.86 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.81 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.77 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.77 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.76 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.71 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.65 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.64 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.62 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.58 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.55 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.49 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.46 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.4 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.17 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.14 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.03 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.0 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.92 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.9 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.81 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.79 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.75 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.63 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.62 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.62 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.58 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.54 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.36 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.33 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.29 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.09 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.05 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.0 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.95 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.86 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.8 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.56 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.55 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.32 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.08 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.04 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.94 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.77 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.76 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.65 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.49 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.46 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.41 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.22 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.17 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.09 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.98 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.59 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.54 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.48 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.31 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.04 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.64 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.24 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.24 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.24 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.17 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.05 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.96 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.96 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.96 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.78 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.7 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.41 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.23 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.22 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.98 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.58 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.57 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.22 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.08 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.0 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.89 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.73 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.32 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.97 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.82 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.62 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.44 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.44 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.18 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.39 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.05 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.03 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.6e-51 Score=400.73 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=175.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCc--chhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK--SALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~--~~~~~~ 164 (629)
.|+++||+++||+..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.. +..... ..+.++
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~--i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD--VTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEccee--cccCCcccceEEEE
Confidence 4999999999999999999999999999999999999999999999999999999998876432 221111 111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
. |....++. .+..++..+...+..++..+.++++.++|+.+|++ +..++++.+|||||||||+||
T Consensus 84 ~-------------Q~~~l~~~-ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 84 F-------------QSYAVWPH-MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp E-------------C------C-CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred e-------------echhhccc-chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 1 11112222 23333334444455667778889999999999996 688999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|||+.+|+||||||||++||+.++..+++.|+++ +.|+|+||||++++..+||||++|++|+|++.|.+.+.|.+
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877654 78999999999999999999999999999999888776644
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-51 Score=400.59 Aligned_cols=215 Identities=23% Similarity=0.339 Sum_probs=147.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~~ 165 (629)
|+++||+|+|++..+|+||||+|++||++||+|||||||||||++|+|+++|++|+|.+.+.. +.... ...+..++
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~--i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR--MNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSC--CTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEE--CCCCchhhceeeeec
Confidence 689999999999999999999999999999999999999999999999999999999876532 22111 11111111
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
+ +...+ +..+..++..+...+...+..+.++++.++|+.+++. +..++++.+|||||||||+|||
T Consensus 79 Q-------------~~~l~-~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 79 Q-------------SYALY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGR 143 (232)
T ss_dssp S-------------SCCC----------------------CHHHHHHHHHHHHC----------------------CHHH
T ss_pred c-------------ccccc-cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHH
Confidence 1 11111 1222333333333344556677788999999999997 6789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
||+.+|+||||||||++||+.++..+++.|++ .+.|||+||||++++..+||||++|++|+|+++|.+.+.|..
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999998887754 488999999999999999999999999999999888776644
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-49 Score=389.89 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++|+
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence 4899999999963 45999999999999999999999999999999999999999999999873 359999
Q ss_pred ccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|++ .+...+|+.+++.... +....++++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 84 ~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRvaiAraL~~~P~iLll 160 (239)
T d1v43a3 84 FQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160 (239)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence 9986 3566789998875432 2223456788999999998654 567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..++++|.++ +.|||+||||++++..+||||++|++|+|+ ..|+++++.
T Consensus 161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~ 225 (239)
T d1v43a3 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY 225 (239)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999988765 679999999999999999999999999997 589988764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.8e-50 Score=394.98 Aligned_cols=224 Identities=24% Similarity=0.325 Sum_probs=177.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|++.|++|+|.+.+....-.......
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~------ 76 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV------ 76 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC------
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhc------
Confidence 48999999999999999999999999999999999999999999999999999999998764321100000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..++|+...+ +..+..++......+...+..+.++++.++|+.+|++ +..++++.+|||||||||+||||
T Consensus 77 -~~~~r~ig~v~Q~~~L~-~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAra 153 (240)
T d1g2912 77 -PPKDRDIAMVFQSYALY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRA 153 (240)
T ss_dssp -CGGGSSEEEECSCCCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHH
T ss_pred -ccccccceecccchhhc-chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 00000011111111122 2223344444444555667778889999999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|+.+|+||||||||++||+.++..+++.|++ ++.|||+||||++++..+||||++|++|+|++.|.+.+.|.+
T Consensus 154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999887754 489999999999999999999999999999999888776543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-49 Score=390.30 Aligned_cols=202 Identities=23% Similarity=0.284 Sum_probs=148.9
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeec
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYH 470 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~ 470 (629)
|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeec
Confidence 689999999963 45999999999999999999999999999999999999999999999873 3589999
Q ss_pred cchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy10512 471 QHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 545 (629)
|++ .+...+|+.+++... .+.....+++.++|+.++|.+.. ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 79 QSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp SSC--CC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEE
T ss_pred ccc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 986 355677888776432 22334467789999999998654 5678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 546 EPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 546 EPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||+|||+.++..+++.|.++ +.|||+||||++++..+||||++|++|+|+ +.|+++++.+
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~ 220 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 220 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999999888654 679999999999999999999999999997 5798877643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.4e-49 Score=388.00 Aligned_cols=202 Identities=22% Similarity=0.292 Sum_probs=177.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
.|+++||++.|++ ..+++||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 5899999999963 45899999999999999999999999999999999999999999998862
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|++ .+...+|+.+++... .+....++++.++++.+||.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 81 RDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp SSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcC
Confidence 2589999986 356678998876432 23334456789999999998654 567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+||||||||+|||+.++..+++.|.++ +.|||+||||++++..+||||++|++|+|+. .|+++++.
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~G~~~el~ 228 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999999988664 6799999999999999999999999999984 78887764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.4e-49 Score=389.52 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=179.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------e
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------L 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 464 (629)
.|+++||++.|+.+...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999654456899999999999999999999999999999999999999999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
+++|++|++ .+...+|+.+++... .+....++++.++|+.+||++.. ++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhh-hCChhhCCHHHHhHHHHHhHHhhcc
Confidence 589999986 356678999987543 22223467789999999997654 5677999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|+ +.|+++++.+
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv-~~g~~~el~~ 230 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999988765 679999999999999999999999999997 5788877643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.9e-49 Score=386.42 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=176.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
||+++||+++|++ . +|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++|+
T Consensus 1 mi~v~nlsk~y~~--~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEeCC--E-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 5899999999953 3 899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
+|++ .+...+|+.+++.... ......+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~Q~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP 154 (229)
T d3d31a2 78 YQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-DRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (229)
T ss_dssp CTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred cccc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhH-hCChhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence 9986 3556789988764321 1223456899999999998655 567899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 548 TNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++||+.++..+++.|.++ +.|||+||||++++..+||||++|++|+|+ +.|+++++.
T Consensus 155 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~ 216 (229)
T d3d31a2 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF 216 (229)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999988664 569999999999999999999999999997 589988764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-49 Score=388.56 Aligned_cols=203 Identities=21% Similarity=0.326 Sum_probs=177.2
Q ss_pred eEEEEEEEEEEcCCCC--eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDGP--WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~--~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
||+++||++.|+.+.. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 5899999999975432 4799999999999999999999999999999999999999999999873
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|++. +...+|+.+++.. ..+.....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~~--l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSCC--CCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-SSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hccccccccccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHhhhhcc
Confidence 24899999863 5567889887643 234434567899999999998765 56779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|+||||||||++||+.++..+++.|.++ +.|||+||||++++..+||||++|++|+|+ +.|+++++
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv-~~G~~~ei 228 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEV 228 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE-EEEETTTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999999998764 679999999999999999999999999998 47776654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-48 Score=384.59 Aligned_cols=199 Identities=25% Similarity=0.341 Sum_probs=170.3
Q ss_pred eEEEEEEEEEEcCCCC--eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDGP--WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~--~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
||+++||++.|+.+.. .+|+||||+|++||++||+|||||||||||++|+|+++|++|+|.++|.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 5899999999965432 3799999999999999999999999999999999999999999999873
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc-----C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS-----F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|++ .+.+.+|+.+++... . ......+++.++|+.+||.+...++++.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 2489999986 356678998876431 1 112334567889999999865556678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCC
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 601 (629)
||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++ ++||||++|++|+|+. +|+
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~-~g~ 228 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEK 228 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE-ecc
Confidence 999999999999999999999999999998765 56899999999987 6999999999999974 443
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-49 Score=393.72 Aligned_cols=221 Identities=24% Similarity=0.393 Sum_probs=175.5
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~~----~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|+.. .+|+||||+|++||++||+||||||||||+++|+|++.|++|+|.+.+. ++...+...
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~--~i~~~~~~~-- 76 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ--ELTTLSESE-- 76 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTE--EECTTCHHH--
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCe--EeeeCChhh--
Confidence 48999999999643 5899999999999999999999999999999999999999999887543 222111100
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
....|..+..++|+...++..+..++ ......+...+..+.++++.++|+.+||+ +..++++.+|||||||||+
T Consensus 77 ----~~~~rr~ig~VfQ~~~l~~~~tv~en-i~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 77 ----LTKARRQIGMIFQHFNLLSSRTVFGN-VALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp ----HHHHHHHEEECCSSCCCCTTSBHHHH-HHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHH
T ss_pred ----hhhhhccccccccccccCCCccHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHH
Confidence 00111112222222222233333444 33344455667778889999999999997 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++..+++.|++ ++.|||+||||++++..+||||++|++|+|++.|.+.+.|
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999988764 3789999999999999999999999999999998877655
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-49 Score=397.02 Aligned_cols=233 Identities=24% Similarity=0.356 Sum_probs=177.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCCCcc-hhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPASDKS-ALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~~~~-~~~~~ 164 (629)
.|+++||+|+||+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+.... ....... .....
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 389999999999999999999999999999999999999999999999999999999887543221 0111000 00000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
......+..+..++|....++..+..+++.............+..+++.++|+.+|+.....++++.+|||||||||+||
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA 161 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 161 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence 00001111111122222222233344444433233344566677889999999999986667888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|++.|.+.+.|..
T Consensus 162 raL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239 (258)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998887654 68999999999999999999999999999999888776654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.6e-49 Score=389.33 Aligned_cols=223 Identities=22% Similarity=0.301 Sum_probs=175.6
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y--~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|+++||+|+| |...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+.. +.........
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~--i~~~~~~~~~-- 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL--VASNGKLIVP-- 78 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEE--EEETTEESSC--
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEE--eecCchhhcc--
Confidence 48999999999 56789999999999999999999999999999999999999999998875432 1111100000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
..+..+..++|+...++.. +..++.........++..+.++++.++|+.+||+ +..++++.+|||||||||+||
T Consensus 79 ----~~rr~ig~vfQ~~~L~p~l-tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiA 152 (242)
T d1oxxk2 79 ----PEDRKIGMVFQTWALYPNL-TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALA 152 (242)
T ss_dssp ----GGGSCEEEEETTSCCCTTS-CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred ----hhhccceEEeccccccccc-cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHH
Confidence 0000111111222222222 3333333333344566777888999999999996 688999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~ 319 (629)
|||+.+|+||||||||++||+.++..+++.|+++ +.|+|+||||++++..+||||++|++|+|++.|.+.+.|..
T Consensus 153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877554 78999999999999999999999999999999888777644
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.9e-49 Score=385.71 Aligned_cols=213 Identities=23% Similarity=0.304 Sum_probs=170.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||||+|++ .+|+||||+|++||++||+||||||||||+++|+|++.|++|+|.+.+. ++...
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~--~i~~~---------- 67 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK--DVTDL---------- 67 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTE--ECTTS----------
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccE--ecccc----------
Confidence 4899999999987 5899999999999999999999999999999999999999999987543 22111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..++|+...++.. +..++..+...+..... .+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 68 -~~~~r~ig~v~Q~~~l~~~~-tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAra 141 (229)
T d3d31a2 68 -SPEKHDIAFVYQNYSLFPHM-NVKKNLEFGMRMKKIKD---PKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARA 141 (229)
T ss_dssp -CHHHHTCEEECTTCCCCTTS-CHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHH
T ss_pred -chhHhcceeeccccccCccc-cHHHHHHHHHhhccccH---HHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhh
Confidence 11122222223332223333 33333333333333332 45789999999997 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
|+.+|+||||||||++||+.++..+++.|++ .+.|||+||||++++..+||||++|++|++++.|.+.+.|.
T Consensus 142 L~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred hhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987754 47899999999999999999999999999999987766553
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-48 Score=383.90 Aligned_cols=215 Identities=23% Similarity=0.334 Sum_probs=165.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+|+|+. ..+|+||||+|++||++||+|||||||||||++|+|++.|++|+|.+.+. ++........
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~--~i~~~~~~~~- 77 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI--KTNDLDDDEL- 77 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE--ECTTCCHHHH-
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCE--EcCcCChhhc-
Confidence 4899999999963 24899999999999999999999999999999999999999999877532 2222111100
Q ss_pred hhhhchHH-HHHHHHHHHHHhccCChhHHHHHHHHHhhh---hccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 163 CVMEVDEE-RVRLEKLAEQLVACEDDESQEQLMDIYDRL---DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
... +..+..++|+...++..+..+++ .+...+ ...+..+..+++.++|+.+||.....++++.+||||||
T Consensus 78 -----~~~r~~~ig~v~Q~~~l~~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 78 -----TKIRRDKIGFVFQQFNLIPLLTALENV-ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (230)
T ss_dssp -----HHHHHHHEEEECTTCCCCTTSCHHHHH-HHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred -----chhhcceEEEEecchhhCcCccHHHHH-hHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHH
Confidence 000 01111222222222233333333 322222 23455667788999999999986678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++ ++||||++|++|+|+..+
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999999988654 78999999999987 699999999999999765
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-47 Score=383.89 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=176.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
.|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 4899999999963 35899999999999999999999999999999999999999999998863
Q ss_pred ---------eeEEeeccchhcccCCCCCHHHHHhhc------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 464 ---------LRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 464 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
.+++|++|++. +...+++.+++... .+.....+++.++++.+|+.....++++.+||||||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~--l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR 157 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 157 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred cHhHHHHHhcceEEEEechh--hccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHH
Confidence 24789999863 55677888775421 22223456788999999998655556679999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
|+|||||+.+|+||||||||+|||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+ +.|+++++
T Consensus 158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev 236 (258)
T d1b0ua_ 158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 236 (258)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999999999999999998765 568999999999999999999999999998 57888776
Q ss_pred HH
Q psy10512 606 KE 607 (629)
Q Consensus 606 ~~ 607 (629)
..
T Consensus 237 ~~ 238 (258)
T d1b0ua_ 237 FG 238 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-47 Score=379.50 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=173.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 4 d~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred ceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 568999999999963 45899999999999999999999999999999999999999999999873 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHc-CCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|... +...+|+.+++.... ......+.+..++..+ ++.+. .++++++|||||||||+|||||+.+|
T Consensus 82 gi~~~~q~~~--l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 82 GIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-LKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-TTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccccCcccc--cCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHH-HhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 3788888753 556788888764321 1222344556667766 56544 45678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++|||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|+ +.|+++++.+
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~ 228 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 999999999999999999999998776 568999999999999999999999999997 5899888753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-47 Score=379.49 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=166.2
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.+|+++||+++||+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. ++......
T Consensus 5 ~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~--~i~~~~~~------ 76 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ--DITNKPAH------ 76 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE--ECTTCCHH------
T ss_pred eEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccc--ccccccHH------
Confidence 4699999999999999999999999999999999999999999999999999999999987543 22221110
Q ss_pred hchHHHHHH--HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC-CCCchhhhcccCCCChHHHHHHH
Q psy10512 166 EVDEERVRL--EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL-GFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 166 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.+.+. ....+... .++..+..++..... ..........+.+.+++..+ ++. +..++++.+|||||||||+
T Consensus 77 ----~~~r~gi~~~~q~~~-l~~~ltv~en~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 ----VINRMGIALVPEGRR-IFPELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp ----HHHHTTEEEECSSCC-CCTTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHH
T ss_pred ----HHHHhcccccCcccc-cCCcccHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHH
Confidence 00000 00001111 122223333322222 12223344455666777776 564 5678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||||+.+|+||||||||+|||+.++.++++.|+++ |.|||+||||++++..+||||++|++|++++.|.+.+.+
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999987654 789999999999999999999999999999887665544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-46 Score=372.75 Aligned_cols=204 Identities=22% Similarity=0.324 Sum_probs=176.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeEEe
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRFAR 468 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~~~ 468 (629)
.|.++||+++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 aI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeE
Confidence 3789999999963 45999999999999999999999999999999999999999999999873 45889
Q ss_pred eccchhcccCCCCCHHHHHhh-----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|.. .+...+++.+++.. ........+.++.+++.+++.... ++++.+|||||||||+|||||+.+|++||
T Consensus 80 vpq~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 80 LPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp ECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eeecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH-hhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99874 35566788877532 122223345678889999997654 56789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHH
Q psy10512 544 LDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKET 608 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 608 (629)
|||||+|||+.++..++++|+++ +.|||++|||++++..+||||++|++|+|+ +.|+++++++.
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~ 223 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKER 223 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhc
Confidence 99999999999999999998765 579999999999999999999999999997 58999988654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.6e-47 Score=377.10 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++||+++||++++|+||||+|++||++||+|||||||||||++|+|++.|++|++.+.+.+ +.... .
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~--i~~~~-~-------- 71 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVEEP-H-------- 71 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTTCH-H--------
T ss_pred EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEe--cccCh-H--------
Confidence 899999999999999999999999999999999999999999999999999999999886432 21110 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
..+..+..+.+... ..+..+..++..++..+......+..+.+..+++.+++. +..++++.+|||||||||+|||||
T Consensus 72 -~~~~~i~~vpq~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA~al 148 (238)
T d1vpla_ 72 -EVRKLISYLPEEAG-AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARAL 148 (238)
T ss_dssp -HHHTTEEEECTTCC-CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred -HHHhhEeEeeeccc-cCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHHHHHH
Confidence 00000000111111 112223333444444455556666778889999999996 678899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
+.+|+||||||||+|||+.++..++++|+++ |.|||++|||++++..+||||++|++|+|++.|.+.+.
T Consensus 149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el 220 (238)
T d1vpla_ 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220 (238)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999888654 78999999999999999999999999999988655443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-46 Score=378.04 Aligned_cols=204 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------ee
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 465 (629)
.+|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 3 ~iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 3 EILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred ceEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 37999999999963 35899999999999999999999999999999999999999999999874 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC-----------------C-ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF-----------------P-EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 527 (629)
++|++|.+. +...+|+.+++.... . .....+++.++++.+++... .++++.+|||||||
T Consensus 81 i~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~Q 157 (254)
T d1g6ha_ 81 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGGQMK 157 (254)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHH
T ss_pred CCccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh-ccCchhhCCcHHHH
Confidence 889999874 445678888764310 1 11233567889999999765 45688999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||+|||||+.+|++|||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|+ .+|++++
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv-~~g~~~e 236 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 236 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE-EEecHHH
Confidence 999999999999999999999999999999999988765 578999999999999999999999999998 4788776
Q ss_pred HHH
Q psy10512 605 YKE 607 (629)
Q Consensus 605 ~~~ 607 (629)
..+
T Consensus 237 ~~~ 239 (254)
T d1g6ha_ 237 EIK 239 (254)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-47 Score=381.40 Aligned_cols=219 Identities=18% Similarity=0.207 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++||+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. ++.........
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~--~i~~~~~~~~~---- 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK--DITNKEPAELY---- 77 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE--ECTTCCHHHHH----
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCE--eccchhHHHHH----
Confidence 599999999999999999999999999999999999999999999999999999998887543 22221111000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHH-------------hhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCC
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIY-------------DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF 233 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 233 (629)
+..+...++....++..+..+++ .+. ............+++.++++.+++. ...++++.+|
T Consensus 78 ----~~gi~~v~Q~~~~~~~ltv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 151 (254)
T d1g6ha_ 78 ----HYGIVRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGEL 151 (254)
T ss_dssp ----HHTEEECCCCCGGGGGSBHHHHH-HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGS
T ss_pred ----HhcCCccCCccccCCCCeeeeee-eehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhC
Confidence 00000000000011111222222 111 1111122334557888999999996 5689999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++ |.|||+||||++++..+||||++|++|+|++.
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence 999999999999999999999999999999999999999887544 78999999999999999999999999999998
Q ss_pred cCcHHHH
Q psy10512 311 GGNYEAF 317 (629)
Q Consensus 311 ~g~~~~~ 317 (629)
|.+.+.+
T Consensus 232 g~~~e~~ 238 (254)
T d1g6ha_ 232 GRGEEEI 238 (254)
T ss_dssp EESHHHH
T ss_pred ecHHHHh
Confidence 7765544
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.8e-46 Score=370.91 Aligned_cols=203 Identities=21% Similarity=0.342 Sum_probs=167.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
||+++||+|+|+++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 mle~knvsf~Y~~~~-~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSSSS-CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 589999999997544 4899999999999999999999999999999999999999999999873 3578
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|++. + +..|+.+++..........+.+...++..++...... ....+|||||||||+|||||+.
T Consensus 80 ~v~Q~~~--l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 80 FVSQDSA--I-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp EECCSSC--C-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEccccc--c-CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999863 2 3458888875443322344555556665554322111 1235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||+.+...+++.|.++ +.|||+||||++.+. .||||++|++|+|+ ..|+++++.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999876 679999999999886 59999999999997 5899988754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-45 Score=365.10 Aligned_cols=202 Identities=26% Similarity=0.351 Sum_probs=167.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~~ 468 (629)
|+++||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 6899999999766667999999999999999999999999999999999999999999999873 35899
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc----------ccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR----------QQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
++|++. .+..|+.+++....+. ...+.+..+++..++... ........|||||||||+|||||+.+
T Consensus 82 v~Q~~~---lf~~Ti~eNi~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~ 157 (241)
T d2pmka1 82 VLQDNV---LLNRSIIDNISLANPG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 157 (241)
T ss_dssp ECSSCC---CTTSBHHHHHCTTSTT-CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred Eecccc---cCCccccccccccCcc-ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence 999863 2456899988654433 233444445444443211 11123478999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+||||||||++||+.+...+++.|.++ +.|+|+||||++.+ ..||+|++|++|+|+ ..|+++++..
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv-~~G~~~ell~ 226 (241)
T d2pmka1 158 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIV-EQGKHKELLS 226 (241)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGG-TTSSEEEEEETTEEE-EEECHHHHHH
T ss_pred cchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999876 56999999999988 569999999999997 4799888753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.8e-45 Score=357.03 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=170.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
.|++ ++.++|++ . -+ ||||++. +|+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+
T Consensus 2 ~l~v-~~~k~~g~--~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 2 FLKV-RAEKRLGN--F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEE-EEEEEETT--E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEE-EEEEEECC--E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 3677 67899953 2 34 8999995 6899999999999999999999999999999999873 368999
Q ss_pred ccchhcccCCCCCHHHHHhhcCC---ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP---EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|+. .+...+|+.+++..... .....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~Q~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~-~~~~~~LSGG~kQRvaiAral~~~P~illlDE 152 (240)
T d2onka1 76 PQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred ccch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhh-hCChhhCCHHHHHHHHHHHHHhccCCceEecC
Confidence 9985 35567899998865432 223356789999999998654 56779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|+ +.|+++++.
T Consensus 153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii-~~G~~~el~ 215 (240)
T d2onka1 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEecHHHHh
Confidence 99999999999999998765 568999999999999999999999999997 579987764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-45 Score=366.72 Aligned_cols=203 Identities=25% Similarity=0.304 Sum_probs=166.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+|+|+....++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 38999999999765555899999999999999999999999999999999999999999999873 2588
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCC-----------CCcccccCcCcCChhHHHHHHHHHHHc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL-----------TGRQQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
|++|++. .+..++.+++....+.....+++.++++..++ ..... ..+.+|||||||||+|||||+
T Consensus 93 ~v~Q~~~---l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~-~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 93 LVSQNVH---LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EECSSCC---CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHH
T ss_pred EEeeccc---cCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhc-CCCCCcCHHHHHHHHHHHHHh
Confidence 9999763 23456777665443222344555555544443 22222 234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|+||||||||++||+.+...+++.|.++ +.|||+||||++.+. .||+|++|++|+|+ ..|+++++.+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv-~~G~~~eLl~ 239 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 239 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 679999999999884 69999999999997 4799888654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.3e-45 Score=359.22 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=166.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|++ ++.++||+..+ ||||++. ||+++|+||||||||||+++|+|+++|++|+|.+.+....-.......+.++
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v-- 75 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV-- 75 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC--
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee--
Confidence 4788 67999999875 8999995 6899999999999999999999999999999988654321111111111111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+|....++..+..+++ .+ .+......+.++++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 76 -----------~Q~~~l~~~ltV~enl-~~--~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAra 140 (240)
T d2onka1 76 -----------PQDYALFPHLSVYRNI-AY--GLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARA 140 (240)
T ss_dssp -----------CSSCCCCTTSCHHHHH-HT--TCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHH
T ss_pred -----------ccchhhcccchhhHhh-hh--hhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHHH
Confidence 1111122222333333 22 234455666778999999999997 68899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+++++|.+.+.+
T Consensus 141 l~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 99999999999999999999999999887553 789999999999999999999999999999988776654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-44 Score=360.34 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=164.4
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
.|+++||+|+|++. ...+|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 49999999999642 234899999999999999999999999999999999999999999999873 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHH---------HHHHHc--CCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMR---------KIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
+|++|++. + +..|+.+++.............. ..+..+ |+.... .....+|||||||||+|||||
T Consensus 91 ~~v~Q~~~--l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i-~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 91 AAVGQEPQ--V-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV-DEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp EEECSSCC--C-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC-CSSCSSSCHHHHHHHHHHHHH
T ss_pred hhcccccc--c-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhH-hccCccCChhHceEEEEeecc
Confidence 99999863 2 35688888765432211111221 233333 333222 234578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+.+...+++.|.++ +.|+|+||||++.+. .||||++|++|+|+ ..|+++++.+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv-~~Gt~~eLl~ 240 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIR-EGGTHQQLME 240 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999765 569999999999885 59999999999998 4799888754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-44 Score=361.39 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=171.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+|+|++...++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 49999999999765556899999999999999999999999999999999999999999999873 3589
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|+.. .+..|+.+++....+. ...+++.++++..++..... .....+|||||||||+|||||++
T Consensus 96 ~v~Q~~~---lf~~Ti~eNi~~g~~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 96 LVQQDNI---LFSDTVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp EECSSCC---CCSSBHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred eeecccc---CCCCCHHHHHhccCcC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 9999752 3456999998765543 34556677777776632111 11235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|+||||||||++||+.+...+++.|.++ +.|+|+||||++.+. .||+|++|++|+|+. .|+++++.+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~-~G~~~eLl~ 241 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIA 241 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999876 469999999999884 699999999999974 799888654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-44 Score=360.75 Aligned_cols=215 Identities=23% Similarity=0.323 Sum_probs=150.9
Q ss_pred ceeEEEEeEEEEeCCe---eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 85 SRDVKIANFSITFHGC---ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 85 ~~~i~i~nls~~y~~~---~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
...|+++||+|+|+++ .+|+||||+|++||++|||||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i--~~~~~--- 83 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL--PQYEH--- 83 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG--GGBCH---
T ss_pred cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec--chhhh---
Confidence 3459999999999753 599999999999999999999999999999999999999999998754321 11000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhh-----HHHHHHHHHHhC--CCCchhhhcccCCCC
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT-----AEARAANILHGL--GFTKEMQQKKTKDFS 234 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~L~~l--gl~~~~~~~~~~~LS 234 (629)
...+..+..+.++. ..++. +..++..+... ....... ....+.+.+..+ |+. ...++.+.+||
T Consensus 84 ------~~~r~~i~~v~Q~~-~lf~~-tv~eni~~g~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LS 153 (251)
T d1jj7a_ 84 ------RYLHRQVAAVGQEP-QVFGR-SLQENIAYGLT-QKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLS 153 (251)
T ss_dssp ------HHHHHHEEEECSSC-CCCSS-BHHHHHHCSCS-SCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSC
T ss_pred ------HHHHHHhhhccccc-cccCc-chhhhhhhhhc-ccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCC
Confidence 00111111111111 11122 22222211100 0000001 111223344544 332 23456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+|||||||||+||+.+...+++.|.++ ++|+|+||||++.+. .||||++|++|+|++.
T Consensus 154 GGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~ 232 (251)
T d1jj7a_ 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREG 232 (251)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEE
T ss_pred hhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999988654 689999999999885 5999999999999987
Q ss_pred cCcHH
Q psy10512 311 GGNYE 315 (629)
Q Consensus 311 ~g~~~ 315 (629)
|.+.+
T Consensus 233 Gt~~e 237 (251)
T d1jj7a_ 233 GTHQQ 237 (251)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 65433
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-43 Score=353.01 Aligned_cols=210 Identities=22% Similarity=0.315 Sum_probs=150.0
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|+++||+|+|++ .++|+||||+|++|+++|||||||||||||+++|+|++.|+.|+|.+.+.. +...+..
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~--i~~~~~~----- 85 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD--LREYTLA----- 85 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE--TTTBCHH-----
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcc--cchhhhh-----
Confidence 5999999999975 359999999999999999999999999999999999999999999876432 1111100
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc----------hhhhcccCCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK----------EMQQKKTKDFS 234 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 234 (629)
..+..+..+.++. ...+.+..+++ . +....... .+.+.++++..++.. ....+.+.+||
T Consensus 86 ----~~r~~i~~v~Q~~-~l~~~ti~~n~-~-~~~~~~~~----~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LS 154 (253)
T d3b60a1 86 ----SLRNQVALVSQNV-HLFNDTVANNI-A-YARTEEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 154 (253)
T ss_dssp ----HHHHTEEEECSSC-CCCSSBHHHHH-H-TTTTSCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred ----hhhheEEEEeecc-ccCCcchhhhh-h-hcCcccCC----HHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcC
Confidence 0000000000000 11112222221 1 11111111 223334444443321 12334567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||||+|||||+.+|+|||||||||+||+.+...+++.|+++ ++|+|+||||++.+. .||+|++|++|+|++.|.
T Consensus 155 GGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998766 689999999999885 699999999999998865
Q ss_pred cHH
Q psy10512 313 NYE 315 (629)
Q Consensus 313 ~~~ 315 (629)
+.+
T Consensus 234 ~~e 236 (253)
T d3b60a1 234 HSE 236 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-43 Score=348.59 Aligned_cols=215 Identities=23% Similarity=0.334 Sum_probs=148.9
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|+++||+|+|+ +.++|+||||+|++|+++||+||||||||||+++|+|++.|++|+|.+++.+ +...+..
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~--i~~~~~~----- 73 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD--LALADPN----- 73 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTTSCHH-----
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEE--ecccchh-----
Confidence 389999999994 4679999999999999999999999999999999999999999998886432 2211110
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHH-----HHHHHHHhCCCC-chhhhcccCCCChHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA-----RAANILHGLGFT-KEMQQKKTKDFSGGWR 238 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~L~~lgl~-~~~~~~~~~~LSGGqr 238 (629)
..+..+..+.++. ..++.+..+++ ... ......+.... .+.+.+..+... .......+..||||||
T Consensus 74 ----~lr~~i~~v~Q~~-~lf~~Ti~eNi-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~ 145 (241)
T d2pmka1 74 ----WLRRQVGVVLQDN-VLLNRSIIDNI-SLA--NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 145 (241)
T ss_dssp ----HHHHHEEEECSSC-CCTTSBHHHHH-CTT--STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHH
T ss_pred ----hhhceEEEEeccc-ccCCccccccc-ccc--CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHH
Confidence 1111111111111 11122222222 111 01111111111 111222222111 1123455689999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|||+|||||+.+|+||||||||++||+.+...+++.|+++ ++|+|+||||++.+. .||+|++|++|+|+++|.+.+.
T Consensus 146 QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHH
T ss_pred HHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998775 679999999999885 6999999999999988654443
Q ss_pred H
Q psy10512 317 F 317 (629)
Q Consensus 317 ~ 317 (629)
+
T Consensus 225 l 225 (241)
T d2pmka1 225 L 225 (241)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.5e-43 Score=350.55 Aligned_cols=208 Identities=21% Similarity=0.291 Sum_probs=146.3
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCCC-cchhhh
Q psy10512 87 DVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPASD-KSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~~-~~~~~~ 163 (629)
+|+++||+|+|++ +++|+||||+|++|+++||+||||||||||+++|+|++.|++|+|.+++.+.. +.... ...+.+
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 4899999999965 67999999999999999999999999999999999999999999988654321 11111 111111
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC------chhh----hcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT------KEMQ----QKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~------~~~~----~~~~~~L 233 (629)
+.+ +. ..++.+ ..++... ....... ...+.+.++..++. ++.. ...+..|
T Consensus 81 v~Q-------------~~-~lf~~t-i~eNi~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~L 140 (242)
T d1mv5a_ 81 VSQ-------------DS-AIMAGT-IRENLTY--GLEGDYT---DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (242)
T ss_dssp ECC-------------SS-CCCCEE-HHHHTTS--CTTSCSC---HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred Ecc-------------cc-ccCCcc-hhhheec--ccccccc---hhhHHHHHHHHHhhhhhccCcccccccccCCCCCC
Confidence 111 00 111222 2211110 0000001 11122222222221 1111 2335679
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+|||||||||+||+.+...+++.|+++ ++|+|+||||++.+. .||+|++|++|+|++.|
T Consensus 141 SGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G 219 (242)
T d1mv5a_ 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSG 219 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 789999999999886 59999999999999765
Q ss_pred CcHH
Q psy10512 312 GNYE 315 (629)
Q Consensus 312 g~~~ 315 (629)
.+.+
T Consensus 220 ~~~e 223 (242)
T d1mv5a_ 220 KHNE 223 (242)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4433
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-42 Score=343.16 Aligned_cols=198 Identities=28% Similarity=0.337 Sum_probs=165.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~ 466 (629)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|.. ..
T Consensus 2 ~il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred eEEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 478999997644 599999999999999999999999999999999975 689999998742 35
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc-------CC
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ-------AP 539 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~-------~p 539 (629)
+|++|... ..+..++.+++..........+.+.++++.+++.+.. .+++.+|||||||||+|||||++ +|
T Consensus 75 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p 151 (231)
T d1l7vc_ 75 AYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 151 (231)
T ss_dssp EEECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTT-TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred eeeecccc--CCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHh-CcChhhcCHHHHHHHHHHHHHHhhCcccCCCC
Confidence 66666542 2344566666554443334567788999999998765 45789999999999999999987 77
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+|+ +.|++++..
T Consensus 152 ~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~ 220 (231)
T d1l7vc_ 152 QLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 220 (231)
T ss_dssp CEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999888765 568999999999999999999999999997 589887763
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6e-43 Score=349.51 Aligned_cols=210 Identities=20% Similarity=0.292 Sum_probs=151.7
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++||+|+|++ .++|+||||+|++|+++||+||||||||||+++|+|++.|+.|+|.+.+.+. ...+.
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i--~~~~~----- 87 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI--KDFLT----- 87 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG--GGSCH-----
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc--ccCCH-----
Confidence 35999999999975 5699999999999999999999999999999999999999999988854321 11100
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchh----------hhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM----------QQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 233 (629)
...+..+..+.++ ...++.+..+++ .+.. ... ..+.+.++++.+++.... .......|
T Consensus 88 ----~~lr~~i~~v~Q~-~~lf~~Ti~eNi-~~g~--~~~----~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~L 155 (255)
T d2hyda1 88 ----GSLRNQIGLVQQD-NILFSDTVKENI-LLGR--PTA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155 (255)
T ss_dssp ----HHHHHTEEEECSS-CCCCSSBHHHHH-GGGC--SSC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ----HHhhheeeeeecc-ccCCCCCHHHHH-hccC--cCC----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCc
Confidence 0111111111111 111222222222 1110 111 123445566666653211 12345679
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+|||||||||+||+.+...+++.|.++ ++|+|+||||++.+. .||+|++|++|+|++.|
T Consensus 156 SgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G 234 (255)
T d2hyda1 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETG 234 (255)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999766 579999999999885 69999999999999876
Q ss_pred CcHH
Q psy10512 312 GNYE 315 (629)
Q Consensus 312 g~~~ 315 (629)
.+.+
T Consensus 235 ~~~e 238 (255)
T d2hyda1 235 THRE 238 (255)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5433
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-42 Score=340.28 Aligned_cols=212 Identities=22% Similarity=0.230 Sum_probs=156.3
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|+++|++++| +|+||||+|++||++||+|||||||||||++|+|+. |.+|+|.+.+. ++.......+
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~--~i~~~~~~~~---- 70 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQ--PLEAWSATKL---- 70 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSS--BGGGSCHHHH----
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCE--ECCcCCHHHH----
Confidence 468999998765 699999999999999999999999999999999975 67788876532 2211110000
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
......+.++ ...+...+..++..... ......+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 71 -----~~~~~~~~~~-~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 71 -----ALHRAYLSQQ-QTPPFATPVWHYLTLHQ-----HDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAA 138 (231)
T ss_dssp -----HHHEEEECSC-CCCCSSCBHHHHHHHHC-----SCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHH
T ss_pred -----Hhhceeeecc-ccCCccccHHHHhhhcc-----chhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHH
Confidence 0000000000 00011112222222211 1123346788899999997 5678999999999999999999
Q ss_pred HHcc-------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 246 ALYV-------KPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 246 aL~~-------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||++ +|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|++++.|.+.+
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred HHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHH
Confidence 9997 77999999999999999999988877654 7899999999999999999999999999998876665
Q ss_pred HHHHH
Q psy10512 316 AFCKT 320 (629)
Q Consensus 316 ~~~~~ 320 (629)
.+...
T Consensus 219 v~~~~ 223 (231)
T d1l7vc_ 219 VLTPP 223 (231)
T ss_dssp HSCHH
T ss_pred HhCCh
Confidence 55443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-40 Score=317.29 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=147.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------eeEEeeccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQH 472 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~~~~~~q~ 472 (629)
.|+++||++.|+ . ++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..++|++|.
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred eEEEEEEEEEeC--C-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeec
Confidence 489999999994 3 4899999999999999999999999999999999999999999999883 357788876
Q ss_pred hhcccCCCCCHHHHHhh---cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 473 LHELLDLDISPLDYMLQ---SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
.. +...+++.+++.. .+......+++.+.++.+++.+. .+++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~ 154 (200)
T d1sgwa_ 79 II--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 154 (200)
T ss_dssp CC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred cc--CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc--ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 42 4455677666432 22222345667888999988643 34678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---Cce-EEEEecCHHHHHhhcCEEEEEeC
Q psy10512 550 HLDMETIDALADAINDF---EGG-LVLVSHDFRLINQVAEEIWICEN 592 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~---~~~-vi~vsHd~~~~~~~~d~i~~l~~ 592 (629)
|||+.++..+++.|.++ +++ ||.++||+ .+||++.+|++
T Consensus 155 gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 155 AIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999888776 233 44444554 47999988753
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8e-40 Score=332.18 Aligned_cols=195 Identities=21% Similarity=0.335 Sum_probs=152.6
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 479 (629)
|.++++++. +. +||+||||+|++||++||+||||||||||+++|+|+++|++|.|.++++ ++|++|... .+
T Consensus 39 i~~~~~~~~---g~-pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~--i~~v~Q~~~---l~ 109 (281)
T d1r0wa_ 39 VSFSHLCLV---GN-PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--VSFCSQFSW---IM 109 (281)
T ss_dssp -CHHHHHHT---TC-EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC--EEEECSSCC---CC
T ss_pred EEEEEcCCC---CC-eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE--EEEEecccc---cc
Confidence 455555532 23 4999999999999999999999999999999999999999999999884 889998753 23
Q ss_pred CCCHHHHHhhcCCChhhHHHHHHHHHHcCC-------CCcc---cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGL-------TGRQ---QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~---~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
..|+.+++..... ........+++..++ .... ......+|||||||||+|||||+.+|+||||||||+
T Consensus 110 ~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 110 PGTIKENIIFGVS--YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp SEEHHHHHTTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred Cceeecccccccc--ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 4578888754332 223334444444332 1111 112345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-hhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 550 HLDMETIDALADAI-NDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 550 ~LD~~~~~~l~~~l-~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+||+.+...+++.+ ..+ +.|+|+|||+++.+ ..||||++|++|+|+ +.|+++++..
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~-~~Gt~~eL~~ 246 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSY-FYGTFSELQS 246 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999999998764 333 56999999999887 579999999999997 5799988754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.3e-39 Score=309.52 Aligned_cols=192 Identities=19% Similarity=0.281 Sum_probs=138.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++|+ +++|+||||+|++|+++||+|||||||||||++|+|+++|++|+|.+.+.. +.... ..+.+
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~--i~~~~-~~i~~--- 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP--ITKVK-GKIFF--- 74 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--GGGGG-GGEEE---
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEe--hhHhc-CcEEE---
Confidence 389999999995 579999999999999999999999999999999999999999999775432 11000 00000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.+. + ...+...+..++......+..... ....+.+.++.+++.. .++++.+|||||||||+||||
T Consensus 75 ~~~----------~-~~~~~~~t~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 75 LPE----------E-IIVPRKISVEDYLKAVASLYGVKV--NKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp ECS----------S-CCCCTTSBHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHH
T ss_pred Eee----------c-ccCCCCcCHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHH
Confidence 000 0 011112223333322222222221 2345667888888753 356789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
|+.+|+||||||||++||+.++..+++.|.++ +.+||.++|++ .+||++.+|++
T Consensus 140 l~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred HhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999888877654 34555555665 47999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-38 Score=320.70 Aligned_cols=199 Identities=19% Similarity=0.266 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcchhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKSALTC 163 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~~~~~ 163 (629)
|.++|++ |.++++|+||||+|++||++||+||||||||||+++|+|++.|++|.|.+.+ ..|.....+.+.
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv--- 113 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI--- 113 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEH---
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCcee---
Confidence 4444443 4678999999999999999999999999999999999999999999886543 222211111110
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCC-CchhhhcccCCCChHHHHHHH
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF-TKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl-~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.+++....... ...+..+.... .....+..+.- ......+.+.+|||||||||+
T Consensus 114 --------------~eni~~~~~~~-~~~~~~~~~~~----------~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~ 168 (281)
T d1r0wa_ 114 --------------KENIIFGVSYD-EYRYKSVVKAC----------QLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 168 (281)
T ss_dssp --------------HHHHTTTSCCC-HHHHHHHHHHT----------TCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHH
T ss_pred --------------ecccccccccc-chHHHHHHHHH----------HhHHHHHhchhhhhhhhhhhccCCCHHHHHHHH
Confidence 01111100000 00000000000 00111111110 011233456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L-~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~ 318 (629)
|||||+.+|+||||||||++||+.+...+++.+ ..+ ++|+|+|||+++.+ ..||||++|++|+|+++| +++++.
T Consensus 169 lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~G-t~~eL~ 245 (281)
T d1r0wa_ 169 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYG-TFSELQ 245 (281)
T ss_dssp HHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEE-CHHHHH
T ss_pred HHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEEC-CHHHHh
Confidence 999999999999999999999999999988753 333 57999999999887 479999999999999875 455443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=4.8e-19 Score=165.96 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=103.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 508 (629)
.++|+||||||||||+++|+|.++|+.|.+...+.....+-.+........................ ...+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 74 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK-------LVGSYG 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS-------EETTEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhh-------hhhhhh
Confidence 5899999999999999999999999999998754321111111100000000000000000000000 001122
Q ss_pred CCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCE
Q psy10512 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH--LDMETIDALADAINDFEGGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 509 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~--LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~ 586 (629)
.. .....+|+|++++.++++++..+|++|++|||+.. .+......+.+.+++.+.++|+++|+... ..+|++
T Consensus 75 ~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~ 148 (178)
T d1ye8a1 75 VN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKE 148 (178)
T ss_dssp EC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHH
T ss_pred cC-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhce
Confidence 21 12246899999999999999999999999997644 46677888888888888899999999765 467899
Q ss_pred EEEEeCCEEEEe
Q psy10512 587 IWICENGKVTKW 598 (629)
Q Consensus 587 i~~l~~G~i~~~ 598 (629)
++.+.+|+++..
T Consensus 149 i~~~~~~~i~~v 160 (178)
T d1ye8a1 149 IRRLPGAVLIEL 160 (178)
T ss_dssp HHTCTTCEEEEC
T ss_pred EEEEeCCEEEEE
Confidence 999999999753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.60 E-value=6.3e-18 Score=158.20 Aligned_cols=80 Identities=11% Similarity=-0.017 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNH--LDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 231 ~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~--LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
..+|+|+++|.++++++..+|++|++|||+.. .+......+.+.+++.+.++|+++|+... ..+|+++..+.+|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEE
Confidence 45899999999999999999999999997644 45667778888888888999999999764 4589999999999997
Q ss_pred EEc
Q psy10512 309 YYG 311 (629)
Q Consensus 309 ~~~ 311 (629)
..+
T Consensus 159 ~v~ 161 (178)
T d1ye8a1 159 ELT 161 (178)
T ss_dssp ECC
T ss_pred EEC
Confidence 654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=8.8e-11 Score=118.62 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred cccCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEE
Q psy10512 228 KKTKDFSGGWRMRIALARAL----YVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIH 301 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL----~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~ 301 (629)
..+..+|+|||+.+.++..+ ...|.++++|||-+||+|.....|.+.|++. +.-||++||++.++. .+|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 34678999999998776653 4568999999999999999999999999765 467999999999886 5788854
Q ss_pred --EcCC
Q psy10512 302 --LDKR 305 (629)
Q Consensus 302 --l~~G 305 (629)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 6666
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=8.2e-10 Score=111.29 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=62.9
Q ss_pred CcCcCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCEEEE-
Q psy10512 517 PIRQLSDGQKCRVVFAYLA----WQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEEIWI- 589 (629)
Q Consensus 517 ~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~i~~- 589 (629)
.+..+|+|||+.+.++..+ ...|.++++|||-+||+|.....+.+.|++.. .-||++||...++. .+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence 4568999999998776653 45678999999999999999999999998763 46999999999985 5798866
Q ss_pred -EeCC
Q psy10512 590 -CENG 593 (629)
Q Consensus 590 -l~~G 593 (629)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=7.4e-09 Score=108.46 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=62.1
Q ss_pred cCcCcCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---ceEEEEecCHHHHHhhcCEEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLA----WQAPHLLLLDEPTNHLDMETIDALADAINDFE---GGLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~---~~vi~vsHd~~~~~~~~d~i~ 588 (629)
.++..||||||.+++||..+ ..+++++|||||++|||+..+..+.++|.+.. .-+|++||+..++ ..||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~-~~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HhcccEE
Confidence 46678999999998877554 45778999999999999999999999997652 3599999999977 5689988
Q ss_pred EE
Q psy10512 589 IC 590 (629)
Q Consensus 589 ~l 590 (629)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=7.1e-09 Score=108.59 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=61.0
Q ss_pred cccCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeE
Q psy10512 228 KKTKDFSGGWRMRIALARAL----YVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNII 300 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL----~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii 300 (629)
+++..||||||.+++||-.| ..+++++|||||+++||+..+..+.++|.+. +.-+|+|||++.++. .||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 34577899999998877543 4677899999999999999999999998754 346999999999776 589987
Q ss_pred EE
Q psy10512 301 HL 302 (629)
Q Consensus 301 ~l 302 (629)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=4.1e-06 Score=79.86 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred HccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhcCCEEEEEecCHHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACV----WLEEELKTYKRILVIISHSQDFLN 293 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~----~l~~~L~~~~~tvIivsHd~~~l~ 293 (629)
.+.+..++|+||+..|=|+.... .+.+.|.+.+..++++||..+...
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 34566799999999999987644 455566666889999999987654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.08 E-value=3.5e-05 Score=73.23 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=35.2
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCceEEEEecCHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDAL----ADAINDFEGGLVLVSHDFRLIN 581 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l----~~~l~~~~~~vi~vsHd~~~~~ 581 (629)
.+.+..++|+||+..|=|+.....+ .+.|.+.+..++++||..++..
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3455569999999999999765444 4445555677999999988764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=2.8e-05 Score=74.43 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=30.7
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc-CCEEEEEecCHHHH
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWL----EEELKTY-KRILVIISHSQDFL 292 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l----~~~L~~~-~~tvIivsHd~~~l 292 (629)
+.+..++|+||+..|=++.....+ .+.|... ...+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 445569999999999887765433 4444333 45788888876543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=1.3e-05 Score=76.81 Aligned_cols=45 Identities=22% Similarity=0.107 Sum_probs=30.7
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcC-ceEEEEecCHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADA----INDFE-GGLVLVSHDFRLI 580 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~----l~~~~-~~vi~vsHd~~~~ 580 (629)
+.+..++|+||+..|=++.....+... +.... ..+|++||..++.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 445569999999999998766555433 32223 4578888876554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=5.4e-06 Score=76.30 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.7
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
.+++.+|.+.+| +++|+|||||||||+|.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 367788888877 999999999999999999853
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.7e-06 Score=75.23 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=29.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|.+.+|.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 77888888775 99999999999999999997443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00015 Score=64.61 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|+|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.00016 Score=65.98 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
|.++.|+||+|||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999997654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00016 Score=64.37 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
+++|+|++|||||||++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999876553
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00015 Score=66.02 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 789999999999999999999877653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.00026 Score=66.75 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
+|..++++|++|+|||||++.|.|......|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 47899999999999999999999988777888753
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.0003 Score=66.27 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
+|..++++|+||+|||||++.|.|......|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence 589999999999999999999988644333333
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.82 E-value=0.00025 Score=63.33 Aligned_cols=26 Identities=42% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.|.++.|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0048 Score=59.17 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
.+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.79 E-value=0.00029 Score=62.91 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|.+|.|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00013 Score=65.59 Aligned_cols=30 Identities=37% Similarity=0.429 Sum_probs=25.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.|.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 589999999999999999999987665544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0002 Score=64.19 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
.+.|.||+|+|||||++.|+..+......+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999987765443333
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00031 Score=62.58 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.00024 Score=63.49 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
+++|+|++|||||||++-|...+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999888777654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.00043 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.+++|+|++|||||||++-|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999987766544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.59 E-value=0.00043 Score=61.77 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+|-++.|+|++||||||+.+.|+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.56 E-value=0.00049 Score=61.37 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..|-+|.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.54 E-value=0.00051 Score=61.50 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..++|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00051 Score=61.04 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++.|+||+||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998755
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.52 E-value=0.00053 Score=61.37 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..|+|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.50 E-value=0.00025 Score=67.06 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
+|.+++++|++|+|||||++.|.|......|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 47788999999999999999999988777888863
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.50 E-value=0.00068 Score=60.32 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++|-.+.|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.44 E-value=0.00031 Score=66.43 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
+|..++++|+||+|||||++.|.|...
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH
Confidence 588999999999999999999988643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00079 Score=62.61 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.|.++.|+||+|+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999988654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.41 E-value=0.0039 Score=58.62 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+++|.++.|.||+|||||||+.-++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.40 E-value=0.00081 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++|-.|.|+||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998655
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00078 Score=58.82 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00095 Score=62.06 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.|.++.|+||+|||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999876544
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.32 E-value=0.001 Score=59.04 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..++.|.|++||||||+.+.|+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00083 Score=58.64 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.017 Score=55.14 Aligned_cols=24 Identities=46% Similarity=0.411 Sum_probs=21.0
Q ss_pred eCCCEEEEECCCCCchHHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
-+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 369999999999999999986655
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.28 E-value=0.014 Score=55.95 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.7
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+-|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3455444337899999999999999999987665
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.00087 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|||.|+.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999986544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.24 E-value=0.0046 Score=59.53 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
|+++...+.+|+++.|.|++|+|||||+.-|+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 55555568899999999999999999977776
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.22 E-value=0.0011 Score=59.24 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.1
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
.+|+|.|+.||||||+.+.|+-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999998665443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.22 E-value=0.001 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.1
Q ss_pred CEEEEECCCCCchHHHHHHHHc
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+|.|+|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.21 E-value=0.0012 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.20 E-value=0.0012 Score=57.49 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=18.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g 135 (629)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999997743
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.001 Score=60.29 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++||-||+|||||||.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.17 E-value=0.0013 Score=58.84 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+++|.|+.||||||+.+.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999997543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.15 E-value=0.0011 Score=58.80 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+||.||||||+.+.|+--
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.15 E-value=0.0011 Score=58.57 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+||.||||||+.+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.13 E-value=0.0013 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++.|.||.||||||+.+.|+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999998653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0026 Score=60.17 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCc--eEEEEecCHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDFR 578 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~--~vi~vsHd~~ 578 (629)
...++|+||.= .|.......+...+..... .+|++|++.+
T Consensus 131 ~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEecccc-ccccccchhhhcccccccccccceeeecccc
Confidence 45699999985 4888888889999988753 4688898875
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.12 E-value=0.0013 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.07 E-value=0.0012 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.00084 Score=60.91 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+|-++.|+|++||||||+.+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.04 E-value=0.0012 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|+|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0015 Score=59.47 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|+||+|||||||++.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999988654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.97 E-value=0.012 Score=54.37 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=47.8
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 506 (629)
..+++++||+|+||||.+-=|+-.+. ..| .+++.+.-+. ......++.+.+.+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~Dt------------------~R~ga~eQL~~~a~~ 65 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-KKG-------FKVGLVGADV------------------YRPAALEQLQQLGQQ 65 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-HTT-------CCEEEEECCC------------------SSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CceEEEEeec------------------cccchhHHHHHhccc
Confidence 45799999999999997666664432 111 1233322110 011234566677777
Q ss_pred cCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy10512 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551 (629)
Q Consensus 507 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~L 551 (629)
+|++-.... ...++.-=. +=++..+...+-+++|.| |+|.
T Consensus 66 l~v~~~~~~-~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 66 IGVPVYGEP-GEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HTCCEECCT-TCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCS
T ss_pred cCcceeecc-cchhhhHHH--HHHHHHhhccCCceEEEe--cCCc
Confidence 887633222 112232111 124555667788999999 6664
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.001 Score=60.30 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|-+|.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.90 E-value=0.0014 Score=58.60 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|||++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.88 E-value=0.015 Score=54.37 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.0
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+++|..+.|.|++|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999866653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0018 Score=58.96 Aligned_cols=23 Identities=39% Similarity=0.860 Sum_probs=20.2
Q ss_pred EEEECCCCCchHHHHHHHHcCCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0019 Score=56.23 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|||++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0019 Score=59.00 Aligned_cols=21 Identities=48% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|+||+|||||||++.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0023 Score=56.92 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.79 E-value=0.0021 Score=60.37 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0025 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~ 136 (629)
..+.|+||+|+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.77 E-value=0.0014 Score=59.16 Aligned_cols=21 Identities=48% Similarity=0.760 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+||+|+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0021 Score=59.50 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|||.|+.|||||||.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999998876553
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0021 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.76 E-value=0.0016 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=21.2
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
-+++|||++|||||||++.|.+-..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999988653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.74 E-value=0.0022 Score=60.28 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.012 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.|+|+|+.++|||||++.|+|.-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 599999999999999999998643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.73 E-value=0.0019 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
-++|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.0025 Score=56.76 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.70 E-value=0.0024 Score=56.61 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|+|+.||||||+.+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.69 E-value=0.0029 Score=57.41 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
++|-++.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4688899999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0023 Score=58.42 Aligned_cols=22 Identities=50% Similarity=0.877 Sum_probs=19.3
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|.|+||+|||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.68 E-value=0.0024 Score=55.58 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++.|+|+.|||||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0027 Score=57.16 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+||+|+.|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999885
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.66 E-value=0.0021 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.66 E-value=0.0024 Score=55.92 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|||+.|||||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999887753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0027 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.62 E-value=0.0025 Score=55.77 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++|+|+.|||||||++.+++-..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999987643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.62 E-value=0.015 Score=56.22 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCC-----CccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTP-----SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMR 501 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (629)
..+++|+|.-|.|||||.+.+..-... ..|.+++. +.+. . +.......+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~-------vs~~--------~----------~~~~l~~~~~ 98 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-------DSGT--------A----------PKSTFDLFTD 98 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-------CCCC--------S----------TTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEE-------ecCC--------C----------CHHHHHHHHH
Confidence 347999999999999999988642211 11222111 0000 0 0001122234
Q ss_pred HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 502 KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW-QAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 502 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
.++..++-.... ..|...-.-...++..+....+ ..+-++|||.-= |.... +.+...+.-||++|-+.+.+
T Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~~~~----~~~~~~~srilvTTR~~~v~ 170 (277)
T d2a5yb3 99 ILLMLKSEDDLL-NFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV---QEETI----RWAQELRLRCLVTTRDVEIS 170 (277)
T ss_dssp HHHHHTTTSCCT-TCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC---CHHHH----HHHHHTTCEEEEEESBGGGG
T ss_pred HHHHHhcchhhc-CCccchhhhhHHHHHHHHHHHhccCCeeEecchhh---HHhhh----hhhcccCceEEEEeehHHHH
Confidence 445555443221 2222222334455555555544 455588899431 22222 23333455688888888776
Q ss_pred HhhcC
Q psy10512 581 NQVAE 585 (629)
Q Consensus 581 ~~~~d 585 (629)
..+..
T Consensus 171 ~~~~~ 175 (277)
T d2a5yb3 171 NAASQ 175 (277)
T ss_dssp GGCCS
T ss_pred HhcCC
Confidence 65443
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0028 Score=58.68 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++||-|+.|||||||.+.|.-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.60 E-value=0.0032 Score=57.12 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
++|-++.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999994
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.0029 Score=56.92 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|||+|..|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.57 E-value=0.0031 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|+|..|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.57 E-value=0.0028 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.9
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|+|+.||||||+.++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.56 E-value=0.003 Score=56.63 Aligned_cols=23 Identities=48% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.003 Score=57.11 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.8
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999888543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.55 E-value=0.0028 Score=55.08 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++.|+|+.|||||||++.|++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.55 E-value=0.0018 Score=58.43 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-|||+|+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.003 Score=56.33 Aligned_cols=22 Identities=50% Similarity=0.727 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.54 E-value=0.0044 Score=54.55 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.++|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999988643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.53 E-value=0.0027 Score=57.74 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-+|+|+||.||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.52 E-value=0.0028 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
..++.|+||.||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.0022 Score=57.59 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+||+|+.|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.51 E-value=0.0031 Score=56.22 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-+.|+|++||||||+.+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3669999999999999999753
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0029 Score=55.46 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
=.++|+|+.|+|||||++.|+|..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0031 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|=.++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0035 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
-.++.|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0031 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|||+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0046 Score=56.22 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
|++|+++.|.||+|||||||+--++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999999876654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0035 Score=57.14 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-.+++|+||.||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0033 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|+|+|+.|||||||++.|+|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.37 E-value=0.0046 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+++|+|+.|||||||++.|.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.36 E-value=0.0036 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.|+|+.||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.35 E-value=0.0037 Score=55.41 Aligned_cols=21 Identities=48% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|+|+.||||||+.+.|+-.
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668899999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.033 Score=51.29 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=54.8
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHc
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 507 (629)
.+++++||+|+||||.+-=|+-.+. ..| .+++.+.-+. + .....++.+.+.+.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~Dt-----------------~-R~gA~eQL~~~a~~l 63 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG-------KSVMLAAGDT-----------------F-RAAAVEQLQVWGQRN 63 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT-------CCEEEECCCT-----------------T-CHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEeccc-----------------c-cccchhhhhhhhhhc
Confidence 5799999999999997766664443 222 1222221110 0 112345566677777
Q ss_pred CCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC-CCCCHHHHHHHHHHHh
Q psy10512 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT-NHLDMETIDALADAIN 564 (629)
Q Consensus 508 gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT-~~LD~~~~~~l~~~l~ 564 (629)
|++-.....+ .++..=- +=.+..+-..+-+++|.|=|= ++.|....+++.++.+
T Consensus 64 ~v~~~~~~~~-~d~~~~l--~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~ 118 (211)
T d2qy9a2 64 NIPVIAQHTG-ADSASVI--FDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVR 118 (211)
T ss_dssp TCCEECCSTT-CCHHHHH--HHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHH
T ss_pred CCcccccccC-CCHHHHH--HHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHH
Confidence 7753322211 2221100 001112334567888888554 3456655565555543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.0039 Score=55.80 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.33 E-value=0.0031 Score=57.15 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.32 E-value=0.0041 Score=55.64 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.31 E-value=0.0031 Score=57.46 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+..+.++.|+||.||||||+.+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.0025 Score=57.19 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.31 E-value=0.003 Score=57.27 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.29 E-value=0.0038 Score=55.87 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.28 E-value=0.05 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
|+.|.++-|-||+|||||||.-.++..
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCceEEEEecCCccchHHHHHHHHHH
Confidence 578999999999999999999776553
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.26 E-value=0.0036 Score=55.43 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.|+|+.||||||+.++|+-.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.0036 Score=62.20 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=29.6
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
+..+.-+.|.|+.||||||||+.|++.++|..=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4455668999999999999999999999886543433
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.23 E-value=0.004 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++.|.|++||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999998654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.22 E-value=0.0042 Score=57.54 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+.+++++||+|+||||.+-=|+-.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999886444543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.0039 Score=56.53 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.18 E-value=0.0053 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+.-.++.++|+.||||||+.+-+.-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0047 Score=55.99 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.005 Score=55.82 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0027 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|+.++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.11 E-value=0.0039 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+.++.|+||.||||||+.+.|+--+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.04 E-value=0.0056 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.03 E-value=0.0056 Score=55.90 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.++|..|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.03 E-value=0.0054 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.02 E-value=0.0039 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.8
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
=+|+|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.02 E-value=0.0049 Score=55.83 Aligned_cols=21 Identities=48% Similarity=0.600 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.00 E-value=0.0042 Score=61.70 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=25.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVPVP 141 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~ 141 (629)
..|.-+.|.|+-||||||||+.|.+..+|..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 3445589999999999999999999876543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.97 E-value=0.0055 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999885
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.96 E-value=0.11 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.180 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0076 Score=54.68 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=24.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.|.+|+++.|.||+|||||||+--++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999877764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.93 E-value=0.0056 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+++|+|..|||||||++-|.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.0065 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=20.8
Q ss_pred eCCCEEEEECCCCCchHHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
+.-+.+.++|+.||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999875
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.90 E-value=0.0061 Score=55.60 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998544
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0068 Score=55.83 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=23.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCC---CCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL---TPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~---~p~~G~i 458 (629)
+|+|.||.||||||+.+.|+--+ .-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998544 3344544
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.78 E-value=0.0055 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999775
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.78 E-value=0.0048 Score=58.74 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.|.||.|||||||.+.|++.+
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999865
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.77 E-value=0.0052 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
=+++|-|+.|||||||++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0066 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.73 E-value=0.0076 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.73 E-value=0.0068 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0067 Score=54.26 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.69 E-value=0.007 Score=55.68 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.69 E-value=0.0077 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0027 Score=55.57 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.++|+|..|+|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.68 E-value=0.0074 Score=55.80 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|+|-||.||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998644
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.0079 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+|.+++|-|+-||||||+++.|...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.66 E-value=0.0077 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+|-+|.|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999874
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=0.0083 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.64 E-value=0.0088 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999766666544
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.64 E-value=0.007 Score=57.94 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.|+|+|..|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.62 E-value=0.0072 Score=57.84 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++|+|..|+|||||++.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999964
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0082 Score=55.22 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|.||.||||||+-+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.60 E-value=0.0024 Score=55.95 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|+.|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.56 E-value=0.0088 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~ 136 (629)
=++.|+||.||||||+.+.|+-.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.53 E-value=0.0081 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0088 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999988664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0091 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|.+|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.50 E-value=0.009 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.1
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
=+++|+||.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.49 E-value=0.0089 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|-||.||||||+.+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0092 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.46 E-value=0.0077 Score=55.18 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999774
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.0093 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
++|-+|+|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999877554
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.45 E-value=0.0091 Score=54.89 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0089 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999987653
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.0084 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
++||-|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999876543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.34 E-value=0.0086 Score=54.84 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.0088 Score=59.35 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=21.6
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
-+|||+||.|||||||+..|...+.
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999985543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.30 E-value=0.0093 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|||+|...||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.0064 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+.+|+|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.0066 Score=56.27 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=18.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+++++||+|+||||.+-=|+-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999887555543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.013 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3889999999999999998753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.27 E-value=0.01 Score=55.35 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH-HhhcceeE
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFL-NGVCTNII 300 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l-~~~~d~ii 300 (629)
++.|+|+||- ..+-......|...+.... ..+|++++..+.+ ..+.+|..
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc
Confidence 6779999994 3445556667777776553 3567777665533 33444443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.26 E-value=0.0096 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+||||+-.||||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.019 Score=50.55 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998775
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.21 E-value=0.011 Score=54.75 Aligned_cols=25 Identities=44% Similarity=0.465 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
++|-++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999863
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.21 E-value=0.12 Score=49.20 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=55.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
-|+.|.++-|.||+|||||||.-.++....-..|.+ .|+.-. ...+ . +
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v--------~yiDtE------~~~~--------------~----~ 100 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC--------AFIDAE------HALD--------------P----V 100 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESS------CCCC--------------H----H
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEE--------EEEECC------ccCC--------------H----H
Confidence 478999999999999999999877776543222322 222111 0011 1 2
Q ss_pred HHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc--CCCEEEEeCCCCCC
Q psy10512 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ--APHLLLLDEPTNHL 551 (629)
Q Consensus 503 ~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lLlLDEPT~~L 551 (629)
+++++|++.... .+..-.-+|++ +.++..|+. +++++|+|=-++..
T Consensus 101 ~a~~~Gvd~d~i--~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 101 YARALGVNTDEL--LVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp HHHHTTCCGGGC--EEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHHhCCCchhE--EEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence 455667653321 11222345555 445555543 58899999888755
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.20 E-value=0.01 Score=52.66 Aligned_cols=22 Identities=50% Similarity=0.721 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.19 E-value=0.011 Score=52.38 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999977643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.032 Score=51.21 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCc--eEEEEecCHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDFRL 579 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~--~vi~vsHd~~~ 579 (629)
.+++|+||. -.|...+...|+..|.+... -+|++|++..-
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 679999975 45667888999999988743 46888998763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.011 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+|||+|..||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.0069 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.013 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.|.||+|+||||++++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999854
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.12 E-value=0.0085 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+..+++++||+|+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999976655543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.013 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999887654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.10 E-value=0.012 Score=54.47 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
+|.+++|-|+-||||||+.+.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.10 E-value=0.011 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHHHcC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++++|+.|+|||||++-+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 899999999999999987643
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.10 E-value=0.011 Score=55.04 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCc--eEEEEecCHHHH-HhhcCEEE
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDFRLI-NQVAEEIW 588 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~--~vi~vsHd~~~~-~~~~d~i~ 588 (629)
.+.++|+||- ..+-......|...+..... .+|++++....+ ..+.+|..
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc
Confidence 5679999994 45555666777777776543 467777665533 33444443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.011 Score=58.67 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.-++||.||.|||||||+..|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999987543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.011 Score=58.06 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|||.|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.014 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.012 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999977553
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.05 E-value=0.01 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.0
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.012 Score=52.33 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.3
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999987653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.014 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
|++|+++-|.||.|||||||.--++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999997664
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.98 E-value=0.0093 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
..++.++||+|+||||.+-=|+-
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999988654443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.013 Score=53.86 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
++||.|..||||||..++|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.96 E-value=0.013 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..++.++||||+||||.+--|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999877776544
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.021 Score=50.44 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+++
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.014 Score=54.09 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
+|-+|+|-|+-||||||+.++|.-.+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6889999999999999999999977654 4443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.013 Score=55.12 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.013 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|.||+|+|||||+++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.89 E-value=0.017 Score=50.55 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999986654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.016 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
++|+|+.|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999888764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.83 E-value=0.016 Score=50.98 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.3
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++|.+++|.|+=|||||||.|.|+.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999885553
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.014 Score=54.40 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.76 E-value=0.009 Score=57.93 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999998877654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.017 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999987765
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.74 E-value=0.015 Score=53.74 Aligned_cols=25 Identities=40% Similarity=0.406 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
...++.++||||+||||.+-=|+-.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999888666543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.017 Score=51.78 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEECCCCCchHHHHHHHHcC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++|+|+.|+|||||++-+++-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999988864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.69 E-value=0.015 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.|.||.|+|||||.++|+..+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 6799999999999999998753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.012 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+.-+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999987654443
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.65 E-value=0.083 Score=53.53 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQD 290 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~ 290 (629)
-+|..+|=++||||++.|-. |+++.....+.- .-|..|+-.-|=-+
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccCc
Confidence 35677888999999999987 677776666433 34777777778544
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.016 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999976543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.017 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999977654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.018 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++++|++|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.021 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999986664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.60 E-value=0.017 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.++.|.||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 346789999999999999997764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.016 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.++|+|+.|+|||||++-+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38899999999999999877543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.57 E-value=0.017 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.015 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.02 Score=50.50 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999998753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.017 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.02 Score=58.26 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++|+|..|+|||||++.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999954
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.014 Score=56.38 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=27.6
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
|.=+.|-+|++.+|+|+.|+|||||+..|+.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4557888999999999999999999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.016 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.016 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.44 E-value=0.015 Score=54.30 Aligned_cols=25 Identities=40% Similarity=0.719 Sum_probs=21.8
Q ss_pred EEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
+.+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6789999999999999999876544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.029 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.02 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 478999999999999999988643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.40 E-value=0.019 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=23.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
...+|.+++|-|+=|||||||.|.|+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 346899999999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.37 E-value=0.018 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=18.6
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+++
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987774
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.32 E-value=0.013 Score=52.38 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.|.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999988653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.02 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999877654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.28 E-value=0.02 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.021 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.26 E-value=0.023 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHH
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAV 132 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~ 132 (629)
|++|+++.|.|++|+|||||+--
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHH
Confidence 78999999999999999999753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.027 Score=49.83 Aligned_cols=24 Identities=46% Similarity=0.718 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+.|+|..|+|||||++.+++...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.21 E-value=0.022 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.20 E-value=0.021 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998874
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.20 E-value=0.023 Score=57.88 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|+|+|..|+|||||++.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999954
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.20 E-value=0.021 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++.|.||.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999886543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.18 E-value=0.011 Score=57.44 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++||.|++||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999886543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.17 E-value=0.02 Score=53.48 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+|||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.021 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999876543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.14 E-value=0.019 Score=53.73 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.+.||.|+|||||.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.024 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++.+++-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.023 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.023 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
.+++|+++-|.||.|||||||.--++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48899999999999999999987665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.022 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.028 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++-+++-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999888754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.025 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.04 E-value=0.014 Score=52.13 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++-+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.04 E-value=0.022 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred CEEEEECCCCCchHHHHHHHHcC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
-++||+||-|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 37999999999999999998854
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.03 E-value=0.022 Score=55.91 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.-+.++||.|||||+|.|+|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 346799999999999999998753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.03 E-value=0.021 Score=53.24 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF 291 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~ 291 (629)
+--||++| ...++.+... .++..+...+..+|++-.-++.
T Consensus 95 D~~ilVvd-a~~g~~~~~~-~~~~~~~~~~~p~iivlNK~D~ 134 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQ-EALNILRMYRTPFVVAANKIDR 134 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHH-HHHHHHHHTTCCEEEEEECGGG
T ss_pred ceEEEEEe-cccCcccchh-HHHHHhhcCCCeEEEEEECccC
Confidence 55678888 6678887765 4555666777766666666654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.026 Score=49.94 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g 135 (629)
++|||+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976644
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.023 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.98 E-value=0.024 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L 133 (629)
+++|+++.|.||.|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 789999999999999999998644
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.98 E-value=0.023 Score=49.60 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g 135 (629)
++|||..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.023 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
|++|.++.|.||+|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999987664
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.023 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.029 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999877653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.02 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999877654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.028 Score=53.58 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=21.3
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.-+.|.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 457899999999999999999765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.90 E-value=0.021 Score=53.28 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=20.0
Q ss_pred EEEECCCCCchHHHHHHHHcCCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+.+.||.|+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999997643
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.045 Score=48.04 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++-+++
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998885
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.029 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.-+.|.||.|||||+|.+.|+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 44789999999999999999874
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.025 Score=50.04 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.0
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999976654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.022 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.80 E-value=0.018 Score=50.93 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.78 E-value=0.026 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+++|+++.|.|++|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.75 E-value=0.026 Score=52.37 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=24.8
Q ss_pred EEEEECCCCCchHHHHHHH-HcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLI-YGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l-~G~~~p~~G~i 458 (629)
.+.|+|++|+|||||++-+ .+...|+-|-.
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~~ 38 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGIF 38 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCeE
Confidence 5899999999999999876 46677888843
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.71 E-value=0.027 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+|||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877544
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.65 E-value=0.035 Score=48.38 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHHHc
Q psy10512 430 LALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G 449 (629)
++|+|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.034 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+++|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.63 E-value=0.033 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNL 446 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~ 446 (629)
.+++|+++.|.|++|+|||||.--
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHH
Confidence 488999999999999999999743
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.60 E-value=0.029 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
.-++||.||-|||||||+..|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.028 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.58 E-value=0.028 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.9
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.-+.++||.|||||+|.|.|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345789999999999999999865
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.028 Score=52.00 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFL 292 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l 292 (629)
+..++|+||.- ++.......|...+.... ..+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 36799999965 455566666766676653 4577888876543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.029 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.0
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999976643
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.53 E-value=0.018 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.+.|+|+.|+|||||++.+++-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999865443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.51 E-value=0.032 Score=50.35 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999977653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.48 E-value=0.026 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-+.|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999874
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.47 E-value=0.052 Score=48.42 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=25.2
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
.++...+.+ .|.-+.|.|++|+|||||.-.|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555566 67789999999999999987664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.026 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.027 Score=49.69 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEECCCCCchHHHHHHHHc
Q psy10512 430 LALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G 449 (629)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.031 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||+.|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999877653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.03 Score=54.02 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=26.7
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|-.|++.+|+|+.|+|||||+..|+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999988643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.027 Score=49.71 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g 135 (629)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999997754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.029 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999887643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.033 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
.|++|.++.|.||+|||||||.--++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999987776
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.27 E-value=0.028 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|.||.|||||+|.+.|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 6789999999999999998753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.031 Score=51.62 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLI 580 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~ 580 (629)
...++|+||. .++.......+...+.... ..+++++++..-+
T Consensus 101 ~~kviiiDe~-d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecc-cccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 3579999985 4566677778877777764 3467788876554
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.24 E-value=0.037 Score=49.90 Aligned_cols=21 Identities=48% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHHHcC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999987753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.035 Score=53.66 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy10512 115 RYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~ 134 (629)
++||-|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998774
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.033 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987665
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.022 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999977653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.043 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|||..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.028 Score=52.62 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQD 290 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~ 290 (629)
+..++|+||.-. |.......+...+.... ..+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 566999999964 78888888888887764 35788998875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.034 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.13 E-value=0.03 Score=49.94 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.+.|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999999987777888854
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.044 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988843
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.05 E-value=0.038 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLI 447 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l 447 (629)
.+++|+++.|.||.|||||||.--+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 3789999999999999999987644
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.02 E-value=0.036 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999997664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.96 E-value=0.04 Score=50.90 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+.+|+++.|.|+.|+|||||.--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999998776653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.036 Score=51.14 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC-C-EEEEEecCHHH
Q psy10512 251 PHLLLLDEPTNHLDLDACVWLEEELKTYK-R-ILVIISHSQDF 291 (629)
Q Consensus 251 P~iLLLDEPT~~LD~~~~~~l~~~L~~~~-~-tvIivsHd~~~ 291 (629)
..++++||- ..+.......|...|.+.. . .+++++++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 469999996 4677888888888888764 3 45666666543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.92 E-value=0.038 Score=48.62 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+.|+|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.89 E-value=0.042 Score=51.52 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
..+.|.||.|+||||+++.|+..+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 478899999999999999999877543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.87 E-value=0.04 Score=49.40 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR--EVPVPD 142 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~--~~p~~g 142 (629)
.+.|||..|+|||||++-+.-. ..|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 4789999999999999987322 235555
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.024 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=18.1
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|+.|+|||||++-+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.86 E-value=0.027 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.81 E-value=0.046 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999987553
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.04 Score=49.01 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++++|..|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999866553
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.77 E-value=0.034 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.-+.|.||.|+|||+|.+.|++..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 347899999999999999999864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.76 E-value=0.028 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=9.1
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999987665
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.039 Score=50.93 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC-ce-EEEEecCHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDFE-GG-LVLVSHDFRLI 580 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~~-~~-vi~vsHd~~~~ 580 (629)
..++|+||- ..+.......|...|.+.. .+ ++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 469999996 5678888899999998874 33 56677665443
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.041 Score=48.34 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999986543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.041 Score=48.31 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.3
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999996644
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.042 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|||..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999876543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.65 E-value=0.043 Score=50.72 Aligned_cols=28 Identities=36% Similarity=0.338 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHH-hCCCCCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVL-GNREVPVPD 142 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L-~g~~~p~~g 142 (629)
.+.|+|++|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5789999999999999866 444456555
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.042 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987643
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.64 E-value=0.043 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
+|||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.043 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.3
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++++|+.|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.60 E-value=0.042 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.|.||.|+|||||.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.58 E-value=0.043 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.55 E-value=0.043 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+.|+|..|+|||||++-+++
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.49 E-value=0.037 Score=49.27 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCc
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDH 143 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p~~g~ 143 (629)
.+.|||..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 47899999999999998876555555553
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=0.04 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.+.||.|||||+|.+.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.028 Score=53.74 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+....-+.|.||.|+|||+|.+.|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33444588999999999999999998763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.047 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.049 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.|||..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999975543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.05 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-++.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.042 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+|+|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999865
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.03 E-value=0.029 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.8
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.-+.|+||-|+|||||+|.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35889999999999999999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.02 E-value=0.047 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|.||.|+|||+|.+.|+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 779999999999999999985
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.00 E-value=0.092 Score=46.76 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.1
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 355555666 57889999999999999986665
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.055 Score=48.45 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=23.3
Q ss_pred EEEEECCCCCchHHHHHHHHc--CCCCCccE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG--DLTPSVGM 457 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G--~~~p~~G~ 457 (629)
.+.|+|..|+|||||++-+.- ...||-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 478999999999999998742 24578884
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.90 E-value=0.049 Score=55.31 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
++-.+.|.||.||||||++..+...+..
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 4568999999999999999999886643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.81 E-value=0.06 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
.+||||...|||||||+.|++-..|
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~ 36 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLG 36 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Confidence 5999999999999999999985433
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.79 E-value=0.056 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=17.8
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999976553
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.75 E-value=0.067 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEECCCCCchHHHHHHHHcCCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.63 E-value=0.039 Score=52.10 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|.||.|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3667799999999999999754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.62 E-value=0.065 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999954
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.62 E-value=0.054 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|.||.|||||+|++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7789999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.053 Score=48.66 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.++|+|+.|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999976654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.054 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999998853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.54 E-value=0.11 Score=46.21 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
.++..-+.+ .|.=+.|.|++|+|||||.-.|.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 344444433 56779999999999999987664
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.056 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
.++|+|+.|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.062 Score=49.87 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+|+|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999987554
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.33 E-value=0.059 Score=52.68 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred cCCCChHHHHHHHHHHHHccCCCEEEE--eCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q psy10512 230 TKDFSGGWRMRIALARALYVKPHLLLL--DEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292 (629)
Q Consensus 230 ~~~LSGGqrqRv~LAraL~~~P~iLLL--DEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 292 (629)
...++.-+..++....-+...|-++++ +|.. ..+...++.......+..++.++-..+.-
T Consensus 195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 195 PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 345777777777777777777776663 3332 24455555555556667777777666543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.29 E-value=0.069 Score=51.11 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=26.9
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
|.=+.+-+|++.+|+|+.|+|||||+..|+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999999877653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.093 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=22.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
=|+.|.++-|.||+|||||||+-.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 367899999999999999999865543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.09 E-value=0.052 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
-+.+|||+|||||-|.|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.05 E-value=0.045 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998765
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.00 E-value=0.076 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.5
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
=.+||||..-||||||++.|++--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 359999999999999999999863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.95 E-value=0.065 Score=52.32 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=35.6
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEe--CCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 519 RQLSDGQKCRVVFAYLAWQAPHLLLLD--EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 519 ~~LSgGqkqrv~lAral~~~p~lLlLD--EPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
..++.-+..++....-+...|-++++- |.. ..+....+.......+..++.++-..+..
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 356777777777777777788776643 221 23444555554455566677777665543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.86 E-value=0.056 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
-+.+|||.|||||-|.|.|++.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999865
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.80 E-value=0.081 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999853
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.56 E-value=0.038 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
-+.|+||-|+|||||+|.|+++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4789999999999999999998754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.08 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+++|=|+-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 378999999999999999998643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.32 E-value=0.15 Score=45.34 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus 5 lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 5 MHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 44444444 47779999999999999886655
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.08 E-value=0.15 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+||||-.-+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.04 E-value=0.11 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.+++||.-+||||||++.|.|...
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999999763
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.94 E-value=0.14 Score=45.28 Aligned_cols=31 Identities=26% Similarity=0.184 Sum_probs=22.4
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
++..-+ .-.|.=+.|.|++|+|||||.-.|.
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 444333 3457789999999999999885543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.77 E-value=0.12 Score=50.07 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=22.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC-CC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT-PS 454 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~-p~ 454 (629)
.++|||.-.||||||++.|+|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 489999999999999999999763 54
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.76 E-value=0.097 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+||||-.-+|||||++.|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.65 E-value=0.11 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 47899999999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.49 E-value=0.14 Score=48.58 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.7
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
-|+.|.++-|.||+|||||||+-.++..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 5789999999999999999987655544
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.46 E-value=0.12 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.4
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.++|+|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999976
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.41 E-value=0.1 Score=52.14 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++.+..+.+.||.|+|||||.+.|++..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999999998864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.22 E-value=0.13 Score=49.38 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEec
Q psy10512 236 GWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELKTY-KRILVIISH 287 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~~~-~~tvIivsH 287 (629)
...+--++++..+.+|+ ++++...+..+-......+.+.+... ..+++++|+
T Consensus 147 ~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 147 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEec
Confidence 33444477888888887 44555555555444445555555544 478888887
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.17 E-value=0.11 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999988744
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.09 E-value=0.14 Score=48.88 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
=++.|.++-|.||+|+|||||+-.++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHH
Confidence 36789999999999999999975544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.1 Score=48.22 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.99 E-value=0.085 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.6
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
++++..+.+.||.|+|||||.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35667899999999999999999998875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.98 E-value=0.18 Score=44.40 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=22.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
++..-+. -.|.=+.|.|++|+|||||.-.+.
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4443333 357789999999999999875544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.85 E-value=0.15 Score=48.57 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.9
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+.+-.|++++|+|+.|+|||||+..|+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999777753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.59 E-value=0.16 Score=46.10 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=0.13 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 36899999999999999999765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.48 E-value=0.13 Score=45.56 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEEEECCCCCchHHHHHHHHcC---CCCCcc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD---LTPSVG 456 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~---~~p~~G 456 (629)
.+.|+|..|+|||||++-+... ..||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4789999999999999988633 345555
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.31 E-value=0.12 Score=49.11 Aligned_cols=20 Identities=45% Similarity=0.574 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy10512 115 RYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~ 134 (629)
-++|+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999883
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.04 E-value=0.13 Score=48.94 Aligned_cols=20 Identities=45% Similarity=0.722 Sum_probs=18.2
Q ss_pred EEEEECCCCCchHHHHHHHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~ 448 (629)
-+||+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999884
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.87 E-value=0.12 Score=49.27 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++.|.++-|.||+|||||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 5778999999999999999996555543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.84 E-value=0.14 Score=46.52 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=18.4
Q ss_pred EEEECCCCCchHHHHHHHHc
Q psy10512 430 LALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G 449 (629)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999953
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.64 E-value=0.17 Score=46.07 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g 135 (629)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999998853
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.24 E-value=0.17 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|.||.|||||-|+.+++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999997543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.24 E-value=0.17 Score=46.26 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.|.||.|+|||-|+.+++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=0.18 Score=45.84 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=34.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHH-HHhhcceeE
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDF-LNGVCTNII 300 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~-l~~~~d~ii 300 (629)
+.+|+|+||.= .|...+...|...|.+.. ..+|++|++.+- +..+-.|..
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~ 160 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeE
Confidence 36799999763 456788888998888763 356888998763 333444543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.18 Score=46.89 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH
Q psy10512 251 PHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFL 292 (629)
Q Consensus 251 P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l 292 (629)
.+|+|+||.=. |...+...|...|.+.. ..+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999965 88899989998887753 4688899886643
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.05 E-value=0.25 Score=48.45 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
+|.|=|+=||||||+++.|...+....+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~ 37 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTL 37 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeE
Confidence 588899999999999999998876544433
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.96 E-value=0.16 Score=48.44 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy10512 115 RYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L 133 (629)
-++|+|..|||||||+..|
T Consensus 8 ni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4799999999999999887
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.96 E-value=0.17 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEECCCCCchHHHHHHH---HcCCCCCccEE
Q psy10512 430 LALVGPNGAGKSTLLNLI---YGDLTPSVGMV 458 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l---~G~~~p~~G~i 458 (629)
+||+|..|||||||+..| +|.... .|.+
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence 899999999999999988 455543 3444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.96 E-value=0.17 Score=48.29 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.9
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
|.=+.|-+|++++|+|+.|+|||||+..+.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHH
Confidence 455788999999999999999999997543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.78 E-value=0.18 Score=46.74 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=32.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLI 580 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~ 580 (629)
.+++|+||.= .|...+...|...|.+.. ..+|++|++.+-+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 4599999985 488899999999998864 3578888886654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.70 E-value=0.14 Score=47.18 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
++.|.|.=||||||||+-|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999988765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.41 E-value=0.28 Score=47.75 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=25.3
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.-+-...++| ++.+.||.|+|||.|.+.|++.
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 34334566666 5666899999999999999875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.22 E-value=0.22 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+||+|.=.+|||||+..|.|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 48999999999999999998854
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.23 E-value=0.33 Score=47.23 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.9
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
++.-+-....+| ++.++||.|+|||.|.+.|++.+
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444455555 56668999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.22 E-value=0.2 Score=47.86 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=25.3
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.|-+|++++|+|+.|+|||+|+..+.-..
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 578899999999999999999987654333
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.98 E-value=0.27 Score=48.22 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
+|.|=|+=||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58999999999999999999877654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.58 E-value=0.23 Score=50.15 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=17.3
Q ss_pred CEEEEECCCCCcHHHHHHHH
Q psy10512 114 RRYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L 133 (629)
..+.|+|++||||||+++.|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~l 70 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLREL 70 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHH
Confidence 46899999999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.57 E-value=0.29 Score=44.04 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~ 136 (629)
+.||||.|.|||+++.-|+-.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHH
Confidence 579999999999999988653
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.22 E-value=0.18 Score=48.38 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=25.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L 133 (629)
|.-+.+-+|++++|+|+.|+|||||+.-+
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~ 88 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDT 88 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHH
Confidence 45678999999999999999999998644
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.08 E-value=0.25 Score=49.89 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=33.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHh
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQ 582 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~ 582 (629)
++++||--+-........++...+.++.++++++.++..+..
T Consensus 279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 788999877666666777777778888999999999877654
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.00 E-value=0.25 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|+|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 488999999999999999987653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.89 E-value=0.31 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-+.||||.|+|||+++.-|+-.
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999988653
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.73 E-value=0.27 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
++.|=|+-||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.32 E-value=0.31 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEECCCCCchHHHHHHHHcC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.97 E-value=0.33 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.++||+|+|||-|.|.|+-..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5588999999999999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.94 E-value=0.36 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEECCCCCchHHHHHHHHcC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~ 450 (629)
+.||||.|.|||+++.-|+-.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHH
Confidence 579999999999999888754
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.82 E-value=0.33 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHHHcCC
Q psy10512 430 LALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.++||+|+|||-|.|.|+-++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5678999999999999999775
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.62 E-value=0.35 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-+.||||.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999998887543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.44 E-value=0.34 Score=43.60 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q psy10512 116 YGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 116 ~~liG~NGsGKSTLlk~L~g 135 (629)
+||+|.-++|||||++.|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999998865
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.44 E-value=0.49 Score=46.27 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
++.|=|+=|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999988654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.18 E-value=0.32 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+.--++.|.||-++|||||+.+|+.++
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999887
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.39 E-value=0.35 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 47799999999999999998643
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.05 E-value=0.39 Score=46.26 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.8
Q ss_pred eCCCEEEEECCCCCcHHHHH
Q psy10512 111 NCGRRYGLLGLNGSGKSTLL 130 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLl 130 (629)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999965
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.03 E-value=0.38 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 36789999999999999999765
|