Psyllid ID: psy10547

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MTSHFSPFHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYWR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHcHHHcccEEEccccccccccHHHHcccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHcccccccEEEcccccccEcccHHcccccEEEEEcccccccEcccHHHccHHHHccccHHHccccccEEEEcccccccEcccHHHcccccccEEEEccccccccccHHHHHccHcccEEEccccccccccHHHHcccHcHcEEEcccccccccHHHHccHHHccEEEcccccHHHccHHHHEEEcccccccccccccc
Coil and Loop (DISEMBL)
MTSHFSPFHLVTLILLTALIqggsaqcpwedeseselqSTCICSYNTANELSiqcndltnyplFKATlnkhvntkvPLDLLYINNSAIrninentfngifiknlqlshcrinsitpnaFRHLDAIRNInentfngifiknlqlshcrinsitpnaFRHLEFTLKHLNlqendleqvpVETLRHLknltlidlsknkigkipddsfstLNNLVTLklsdnnltlyKNSFRGLELNNNLTLYKNSFRGLELSLKNlnlkntklksvtpywr
Flexible Loop (DISEMBL)
MTSHFSPFHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNltlidlsknkigkipddsfSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELslknlnlkntklksvtpywr
Low Complexity Region (SEG)
MTSHFSPFHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGlelslknlnlkntklkSVTPYWR
Disordered region (IsUnstruct)
*****SPFHLVTLILLTALIQGGSAQCPWED****ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTK*********
Disordered Region (DISOPRED)
*****SP*HLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW*
Disordered Region (DISEMBL)
MTSHFSPFHLVTLILLTALIQGG***************STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYWR
Disordered Region (DISPRO)
****FSPFHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSHFSPFHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYWR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q86UN3	420	Reticulon-4 receptor-like	yes	N/A	0.724	0.464	0.290	8e-12
Q9BZR6	473	Reticulon-4 receptor OS=H	no	N/A	0.680	0.386	0.268	1e-11
O75473	907	Leucine-rich repeat-conta	no	N/A	0.769	0.228	0.285	1e-11
Q99M75	473	Reticulon-4 receptor OS=R	yes	N/A	0.546	0.310	0.307	2e-11
Q99PI8	473	Reticulon-4 receptor OS=M	yes	N/A	0.546	0.310	0.307	3e-11
Q80WD1	420	Reticulon-4 receptor-like	no	N/A	0.724	0.464	0.286	3e-11
Q7M6Z0	420	Reticulon-4 receptor-like	no	N/A	0.724	0.464	0.286	5e-11
Q9N0E3	473	Reticulon-4 receptor OS=M	N/A	N/A	0.457	0.260	0.325	1e-10
A4IIW9	606	Leucine-rich repeat and i	no	N/A	0.431	0.191	0.369	2e-10
P35859	603	Insulin-like growth facto	no	N/A	0.676	0.301	0.282	3e-10

>sp|Q86UN3|R4RL2_HUMAN Reticulon-4 receptor-like 2 OS=Homo sapiens GN=RTN4RL2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 41  CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
           C C Y++   +S Q N+ ++ PL      +          L++ N+ IR +   TF G  
Sbjct: 35  CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRTLRPGTF-GSN 83

Query: 101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGI-FIKNLQLSHCRI 148
           +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct: 84  LLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
           +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct: 144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query: 209 NNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSFRGL 247
            +L  L L  N L  +++ +FRGL     L L+ NS   L
Sbjct: 203 GSLDRLLLHGNRLQGVHRAAFRGLSRLTILYLFNNSLASL 242

May play a role in regulating axonal regeneration and plasticity in the adult central nervous system.
Homo sapiens (taxid: 9606)

>sp|Q9BZR6|RTN4R_HUMAN Reticulon-4 receptor OS=Homo sapiens GN=RTN4R PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 29/212 (13%)

Query: 34  ESELQSTCICSYNTANELSIQCNDLTNYPL--FKATLNKHVNTKVPLDLLYINNSAIRNI 91
           +  LQ+  +     +  + +  N +++ P   F+A  N        L +L+++++ +  I
Sbjct: 45  QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN--------LTILWLHSNVLARI 96

Query: 92  NENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IKNLQLSHCRIN 149
           +   F G+  ++ L LS         NA      +R+++  TF+G+  +  L L  C + 
Sbjct: 97  DAAAFTGLALLEQLDLSD--------NA-----QLRSVDPATFHGLGRLHTLHLDRCGLQ 143

Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN 209
            + P  FR L   L++L LQ+N L+ +P +T R L NLT + L  N+I  +P+ +F  L+
Sbjct: 144 ELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 202

Query: 210 NLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
           +L  L L  N +  ++ ++FR  +L   +TLY
Sbjct: 203 SLDRLLLHQNRVAHVHPHAFR--DLGRLMTLY 232

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Homo sapiens (taxid: 9606)

>sp|O75473|LGR5_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 5 OS=Homo sapiens GN=LGR5 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 45/252 (17%)

Query: 41  CICSYNTANELSIQCNDL------TNYPLFKATLNKHVNT-------KVP----LDLLYI 83
           C C  +    L + C+DL      +N  +F + L+  +N         +P    L+ L +
Sbjct: 38  CHCEPDGRMLLRVDCSDLGLSELPSNLSVFTSYLDLSMNNISQLLPNPLPSLRFLEELRL 97

Query: 84  NNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHL--DAIRNINENTFNGIFIKN 140
             +A+  I +  F G++ +K L L +        N  RH+  +A++N+         +++
Sbjct: 98  AGNALTYIPKGAFTGLYSLKVLMLQN--------NQLRHVPTEALQNLRS-------LQS 142

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
           L+L    I+ + P+ F  L  +L+HL L +N L ++PV+  R L  L  + L+ NKI  I
Sbjct: 143 LRLDANHISYVPPSCFSGLH-SLRHLWLDDNALTEIPVQAFRSLSALQAMTLALNKIHHI 201

Query: 201 PDDSFSTLNNLVTLKLSDNNL-TLYKNSFRG------LELN-NNLTLYKNSFRGLELSLK 252
           PD +F  L++LV L L +N + +L K  F G      L+LN NNL  +  + R L  +LK
Sbjct: 202 PDYAFGNLSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEFPTAIRTLS-NLK 260

Query: 253 NLNLKNTKLKSV 264
            L   +  ++S+
Sbjct: 261 ELGFHSNNIRSI 272

Orphan receptor. Stem cell marker of the intestinal epithelium and the hair follicule. Target gene of Wnt signaling.

Homo sapiens (taxid: 9606)

>sp|Q99M75|RTN4R_RAT Reticulon-4 receptor OS=Rattus norvegicus GN=Rtn4r PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 19/166 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L +L+++++A+  I+   F G+  ++ L LS         NA      +R ++  TF G+
Sbjct: 83  LTILWLHSNALAGIDAAAFTGLTLLEQLDLSD--------NA-----QLRVVDPTTFRGL 129

Query: 137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
             +  L L  C +  + P  FR L   L++L LQ+N+L+ +P  T R L NLT + L  N
Sbjct: 130 GHLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 188

Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
           +I  +P+ +F  L++L  L L  N++  ++ ++FR  +L   +TLY
Sbjct: 189 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR--DLGRLMTLY 232

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Rattus norvegicus (taxid: 10116)

>sp|Q99PI8|RTN4R_MOUSE Reticulon-4 receptor OS=Mus musculus GN=Rtn4r PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 19/166 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L +L+++++A+  I+   F G+  ++ L LS         NA  H+     ++  TF+G+
Sbjct: 83  LTILWLHSNALARIDAAAFTGLTLLEQLDLSD--------NAQLHV-----VDPTTFHGL 129

Query: 137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
             +  L L  C +  + P  FR L   L++L LQ+N+L+ +P  T R L NLT + L  N
Sbjct: 130 GHLHTLHLDRCGLRELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 188

Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
           +I  +P+ +F  L++L  L L  N++  ++ ++FR  +L   +TLY
Sbjct: 189 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR--DLGRLMTLY 232

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system (By similarity). Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Mus musculus (taxid: 10090)

>sp|Q80WD1|R4RL2_RAT Reticulon-4 receptor-like 2 OS=Rattus norvegicus GN=Rtn4rl2 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 41  CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
           C C Y++   +S Q N+ ++ PL      +          L++ N+ IR++   TF G  
Sbjct: 35  CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRSLRPGTF-GPN 83

Query: 101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGI-FIKNLQLSHCRI 148
           +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct: 84  LLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
           +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct: 144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query: 209 NNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSFRGL 247
            +L  L L  N L  +++ +F GL     L L+ NS   L
Sbjct: 203 GSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASL 242

May play a role in regulating axonal regeneration and plasticity in the adult central nervous system.

Rattus norvegicus (taxid: 10116)

>sp|Q7M6Z0|R4RL2_MOUSE Reticulon-4 receptor-like 2 OS=Mus musculus GN=Rtn4rl2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 41  CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
           C C Y++   +S Q N+ ++ PL      +          L++ N+ IR++   TF G  
Sbjct: 35  CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRSLRPGTF-GPN 83

Query: 101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGI-FIKNLQLSHCRI 148
           +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct: 84  LLTLWLFSNNLSTIHPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
           +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct: 144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query: 209 NNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSFRGL 247
            +L  L L  N L  +++ +F GL     L L+ NS   L
Sbjct: 203 GSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASL 242

May play a role in regulating axonal regeneration and plasticity in the adult nervous system.

Mus musculus (taxid: 10090)

>sp|Q9N0E3|RTN4R_MACFA Reticulon-4 receptor OS=Macaca fascicularis GN=RTN4R PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 125 IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
           +R+++  TF+G+  +  L L  C +  + P  FR L   L++L LQ+N L+ +P +T R 
Sbjct: 118 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRD 176

Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN 242
           L NLT + L  N+I  +P+ +F  L++L  L L  N +  ++ ++FR L     L L++N
Sbjct: 177 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFRN 236

Query: 243 SFRGLE 248
           +   L 
Sbjct: 237 NLSALP 242

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Macaca fascicularis (taxid: 9541)

>sp|A4IIW9|LIGO1_XENTR Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Xenopus tropicalis GN=lingo1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 125 IRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
           I+ +N++ F+   +++ L+L+   ++ I P AF  L F L+ L L+ N L+ +P+     
Sbjct: 69  IKALNQDEFSAFPYLEELELNENIVSIIEPGAFNGL-FNLRSLGLRSNRLKLIPLGVFTG 127

Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYK 241
           L NLT +D+S+NKI  + DD F  L NL +L++ DN+L  +   +FRGL     LTL K
Sbjct: 128 LSNLTQLDISENKIVILLDDMFQDLYNLKSLEVGDNDLVYISHRAFRGLNSLEELTLEK 186

May play a role in regulating axonal regeneration and plasticity in the adult central nervous system.

Xenopus tropicalis (taxid: 8364)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 23/205 (11%)

Query: 81  LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIR----------NIN 129
           L ++ +A+R++  N F  +  ++ L L    I ++ P AF  + A+R           + 
Sbjct: 223 LDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLM 282

Query: 130 ENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
           E+TF G+  +  L+L+H  I S+ P  F+ L F L+ L L  N + Q+   T   L  L 
Sbjct: 283 EDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHF-LEELQLGHNRIRQLGERTFEGLGQLE 341

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKN----- 242
           ++ L+ N+I ++   +FS L N+  + LS N L +L +  F+GL+  ++L L  +     
Sbjct: 342 VLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHV 401

Query: 243 ---SFRGLELSLKNLNLKNTKLKSV 264
              +F GL   L+ L L++  + S+
Sbjct: 402 RLHTFAGLS-GLRRLFLRDNSISSI 425

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
270007619	847	hypothetical protein TcasGA2_TC014301 [T	0.717	0.227	0.445	2e-42
340712482	891	PREDICTED: hypothetical protein LOC10064	0.747	0.225	0.402	2e-36
442625199	981	hattifattener, isoform B [Drosophila mel	0.684	0.187	0.395	2e-36
442625201	982	hattifattener, isoform C [Drosophila mel	0.684	0.187	0.395	2e-36
158297416	961	AGAP007846-PA [Anopheles gambiae str. PE	0.728	0.203	0.384	5e-36
357625849	852	hypothetical protein KGM_00882 [Danaus p	0.721	0.227	0.406	7e-36
350399820	891	PREDICTED: hypothetical protein LOC10074	0.743	0.224	0.397	1e-35
195470519	1342	GE17637 [Drosophila yakuba] gi|194173655	0.684	0.137	0.408	1e-35
194762211	1270	GF15849 [Drosophila ananassae] gi|190616	0.702	0.148	0.383	2e-35
242015296	941	leucine-rich transmembrane protein, puta	0.728	0.208	0.417	2e-35

>gi|270007619|gb|EFA04067.1| hypothetical protein TcasGA2_TC014301 [Tribolium castaneum]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/249 (44%), Positives = 145/249 (58%), Gaps = 56/249 (22%)

Query: 16  LTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTK 75
             ALI   SAQCPW+ ES  +LQS+C+CSYN  +ELS+QC D+ ++P   A L K+  T 
Sbjct: 10  FVALITLASAQCPWQRES-VDLQSSCLCSYNLGHELSVQC-DMVDWPKLLAALQKYA-TA 66

Query: 76  VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNG 135
            PLDLLY+NNS I  +N+N    IF+ NL+                              
Sbjct: 67  TPLDLLYVNNSTIGALNDN----IFV-NLR------------------------------ 91

Query: 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
             + NLQLS C+INS+    F+  E  LK+LNLQ+NDL +VPVE+LR L+ L+L+DLS N
Sbjct: 92  --VHNLQLSGCKINSVAGGTFKGQEQHLKNLNLQDNDLTEVPVESLRPLRTLSLLDLSHN 149

Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLN 255
           +I  +PD +F TL  L TLKLSDNN+TL       LE          + +GLE SLKNLN
Sbjct: 150 RISAVPDGAFETLKKLATLKLSDNNVTL------SLE----------ALKGLEGSLKNLN 193

Query: 256 LKNTKLKSV 264
           LK T+ K +
Sbjct: 194 LKGTRQKDI 202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712482|ref|XP_003394788.1| PREDICTED: hypothetical protein LOC100645748 [Bombus terrestris]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/261 (40%), Positives = 145/261 (55%), Gaps = 60/261 (22%)

Query: 12  TLILLTA---LIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATL 68
           T++LL A    I   ++ CPW  +   +L+S+CIC YN A ELS+QC D+ +Y    + +
Sbjct: 10  TVLLLLANVIAIVAATSSCPWA-QHVVDLESSCICDYNLARELSVQC-DIVDYEQLLSAM 67

Query: 69  NKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI 128
            +HV +K  +DL Y+NNS I         GI                         +RN 
Sbjct: 68  RRHV-SKTTIDLFYVNNSTI---------GI-------------------------LRN- 91

Query: 129 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
             ++F+ + I N+QLS CRI SI   AFR  E +LK +NL++N+L ++P ETL+ LKNLT
Sbjct: 92  --DSFSSVKINNMQLSGCRIKSIEAQAFRGQESSLKSVNLKDNELTEIPSETLKTLKNLT 149

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE 248
           ++DLS NKI ++ DD+F+ L  LVTLKLSDN +                TL   SFRGL+
Sbjct: 150 VLDLSMNKITRVNDDTFAGL-KLVTLKLSDNEV----------------TLAPGSFRGLD 192

Query: 249 LSLKNLNLKNTKLKSVTPYWR 269
            SLKNLNLK T+ K V    R
Sbjct: 193 RSLKNLNLKGTRQKKVPEALR 213

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625199|ref|NP_001259873.1| hattifattener, isoform B [Drosophila melanogaster] gi|442625203|ref|NP_001259874.1| hattifattener, isoform D [Drosophila melanogaster] gi|440213133|gb|AGB92410.1| hattifattener, isoform B [Drosophila melanogaster] gi|440213135|gb|AGB92411.1| hattifattener, isoform D [Drosophila melanogaster]

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 128/240 (53%), Gaps = 56/240 (23%)

Query: 25  AQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYIN 84
           AQCPW+ +   +LQ++CIC+YN   ELS+QC D  ++    A +N H   K P+DLLY+N
Sbjct: 33  AQCPWQRDV-PDLQTSCICAYNLGRELSVQC-DQVDFSQLLAAMNTHARLK-PVDLLYVN 89

Query: 85  NSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLS 144
           NS I  + +  F+ + + NLQLS C I  I   AF+  +++                   
Sbjct: 90  NSTISELPDAVFSNLSLHNLQLSSCGIQRIATGAFKGQESV------------------- 130

Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
                             L++LNLQ+N L  VPVE L+ L  L L+DLSKN++  IPDD+
Sbjct: 131 ------------------LRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDA 172

Query: 205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
           F  L  L TLKL+DNN+T                L  N+FRGLE SLKNLNLK TK + V
Sbjct: 173 FVGLTKLSTLKLNDNNVT----------------LASNAFRGLEQSLKNLNLKGTKQRKV 216

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625201|ref|NP_608607.2| hattifattener, isoform C [Drosophila melanogaster] gi|442625205|ref|NP_001259875.1| hattifattener, isoform E [Drosophila melanogaster] gi|440213134|gb|AAF51357.2| hattifattener, isoform C [Drosophila melanogaster] gi|440213136|gb|AGB92412.1| hattifattener, isoform E [Drosophila melanogaster]

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 128/240 (53%), Gaps = 56/240 (23%)

Query: 25  AQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYIN 84
           AQCPW+ +   +LQ++CIC+YN   ELS+QC D  ++    A +N H   K P+DLLY+N
Sbjct: 33  AQCPWQRDV-PDLQTSCICAYNLGRELSVQC-DQVDFSQLLAAMNTHARLK-PVDLLYVN 89

Query: 85  NSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLS 144
           NS I  + +  F+ + + NLQLS C I  I   AF+  +++                   
Sbjct: 90  NSTISELPDAVFSNLSLHNLQLSSCGIQRIATGAFKGQESV------------------- 130

Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
                             L++LNLQ+N L  VPVE L+ L  L L+DLSKN++  IPDD+
Sbjct: 131 ------------------LRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDA 172

Query: 205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
           F  L  L TLKL+DNN+T                L  N+FRGLE SLKNLNLK TK + V
Sbjct: 173 FVGLTKLSTLKLNDNNVT----------------LASNAFRGLEQSLKNLNLKGTKQRKV 216

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297416|ref|XP_317652.4| AGAP007846-PA [Anopheles gambiae str. PEST] gi|157015184|gb|EAA12609.4| AGAP007846-PA [Anopheles gambiae str. PEST]

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 135/252 (53%), Gaps = 56/252 (22%)

Query: 13  LILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHV 72
           L++LTA      AQCPW+ E   +LQ++C+C+YN   ELS+QC D  ++P+    L+K+ 
Sbjct: 17  LVVLTARTTVVMAQCPWQREV-PDLQNSCLCAYNLGQELSVQC-DQVDFPVLVEALDKYA 74

Query: 73  NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENT 132
               PLDLLY+NNS I  +    F  + + N+QLS C++  I   AF+  +A+       
Sbjct: 75  RA-TPLDLLYVNNSTIEQLEGGLFVNLKLHNVQLSSCKMRRIDDKAFQGQEAV------- 126

Query: 133 FNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
                                         LK+LNLQ+N LE+VP+  L+ L  L L+DL
Sbjct: 127 ------------------------------LKNLNLQDNLLEEVPIRALKPLTILNLLDL 156

Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLK 252
           SKN++  +P+D+F+ L  L TLKLSDNN                +TL   +FRGLE SLK
Sbjct: 157 SKNRLHSVPNDAFAGLRKLSTLKLSDNN----------------VTLAPFAFRGLEASLK 200

Query: 253 NLNLKNTKLKSV 264
           NLNLK TK K V
Sbjct: 201 NLNLKGTKQKRV 212

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625849|gb|EHJ76140.1| hypothetical protein KGM_00882 [Danaus plexippus]

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 138/251 (54%), Gaps = 57/251 (22%)

Query: 14  ILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVN 73
           +L+  ++QG   QCPW +  +  LQ+TC+C++N A +LS+QC D  ++P   + LN    
Sbjct: 31  VLIVTIVQGTRGQCPWMENPD--LQATCVCAFNLARQLSVQC-DQVDFPTLLSALNSSAG 87

Query: 74  TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF 133
            K+ +DLLYINN+ I                       +S+T + FR+L           
Sbjct: 88  -KISIDLLYINNATI-----------------------SSLTSDMFRNL----------- 112

Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
               I NLQ+S C++  I  NAF      LK+LNLQ+N+L +VPV+ LR L NL+L+DLS
Sbjct: 113 ---AIYNLQISGCKLRKIESNAFNGQGQYLKNLNLQDNELSEVPVKALRILTNLSLLDLS 169

Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKN 253
           KNKI  I + SFSTL  L TLKLSD                NN+TL   +  GLE SLKN
Sbjct: 170 KNKITLIENYSFSTLQELTTLKLSD----------------NNVTLAPQALAGLENSLKN 213

Query: 254 LNLKNTKLKSV 264
           LNLK T+ KSV
Sbjct: 214 LNLKGTRQKSV 224

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399820|ref|XP_003485649.1| PREDICTED: hypothetical protein LOC100741088 [Bombus impatiens]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 144/259 (55%), Gaps = 59/259 (22%)

Query: 13  LILLTALIQ--GGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNK 70
           L+LL ++I     ++ CPW  +   +L+S+CIC YN A ELS+QC D+ +Y    + + +
Sbjct: 12  LLLLESIIAIVAATSSCPWA-QHVVDLESSCICDYNLARELSVQC-DIVDYEQLLSAMRR 69

Query: 71  HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINE 130
           HV +K  +DL Y+NNS I         GI                         +RN   
Sbjct: 70  HV-SKTTIDLFYVNNSTI---------GI-------------------------LRN--- 91

Query: 131 NTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 190
           ++F+ + I N+QLS C+I  I  +AFR  E  LK +NL++N+L ++P ETL+ LKNLT++
Sbjct: 92  DSFSSVKINNMQLSGCQIKGIEAHAFRGQESCLKSINLKDNELTEIPSETLKTLKNLTVL 151

Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS 250
           DLS NKI ++ DD+F+ L  LVTLKLSDN +T                L   SFRGLE S
Sbjct: 152 DLSMNKITRVNDDTFAGL-KLVTLKLSDNEVT----------------LAPGSFRGLERS 194

Query: 251 LKNLNLKNTKLKSVTPYWR 269
           LKNLNLK T+ K V    R
Sbjct: 195 LKNLNLKGTRQKKVPEALR 213

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470519|ref|XP_002087554.1| GE17637 [Drosophila yakuba] gi|194173655|gb|EDW87266.1| GE17637 [Drosophila yakuba]

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 56/240 (23%)

Query: 25  AQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYIN 84
           AQCPW+ +   +LQ++CIC+YN   ELS+QC D  ++    A +N H   K P+DLLY+N
Sbjct: 35  AQCPWQRDV-PDLQTSCICAYNLGRELSVQC-DQVDFSQLLAAMNTHARLK-PVDLLYVN 91

Query: 85  NSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLS 144
           NS I  +                        PNA              F+ + + N+QLS
Sbjct: 92  NSTISEL------------------------PNA-------------VFSNLSLHNVQLS 114

Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
            C I  I   AF+  E  L++LNLQ+N L  VPVE L+ L  L L+DLSKN++  IPDD+
Sbjct: 115 SCGIQRIATGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLTHIPDDA 174

Query: 205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
           F  L  L TLKL+DNN+T                L  N+FRGLE SLKNLNLK TK + V
Sbjct: 175 FVGLTKLSTLKLNDNNVT----------------LASNAFRGLEQSLKNLNLKGTKQRKV 218

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762211|ref|XP_001963249.1| GF15849 [Drosophila ananassae] gi|190616946|gb|EDV32470.1| GF15849 [Drosophila ananassae]

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 131/245 (53%), Gaps = 56/245 (22%)

Query: 20  IQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLD 79
           I     QCPW+ +   +LQ++CIC+YN   ELS+QC+ +    L +A +N H   K P+D
Sbjct: 31  ISPAHGQCPWQRDV-PDLQTSCICAYNLGRELSVQCDQVDFQQLLEA-MNSHARLK-PVD 87

Query: 80  LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIK 139
           LLY+NNS+I  + E  F+ + + N+QLS C I  I   AF+  +++              
Sbjct: 88  LLYVNNSSISELPEGIFSNLSLHNVQLSSCGIQRIDAGAFKGQESV-------------- 133

Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
                                  L++LNLQ+N L  VPVE L+ L  L L+DLSKN++ +
Sbjct: 134 -----------------------LRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSQ 170

Query: 200 IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNT 259
           IPDD+F+ L  L TLKL+DNN                +TL   +FRGLE SLKNLNLK T
Sbjct: 171 IPDDAFTGLTKLSTLKLNDNN----------------VTLAAGAFRGLEQSLKNLNLKGT 214

Query: 260 KLKSV 264
           K + V
Sbjct: 215 KQRRV 219

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015296|ref|XP_002428300.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis] gi|212512885|gb|EEB15562.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/254 (41%), Positives = 142/254 (55%), Gaps = 58/254 (22%)

Query: 12  TLILLT-ALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNK 70
           +LI  T  L+  G  QCPW  + + +LQS+C+C+YN   ELS+QC+ +    L +A   +
Sbjct: 11  SLIYFTFMLLDSGFCQCPWHRDVQ-DLQSSCLCAYNLGQELSVQCDQVDFTKLLQAL--Q 67

Query: 71  HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINE 130
              + + +DLLY+NNS +   NE       IKN                           
Sbjct: 68  DYGSLITIDLLYVNNSTL---NE-------IKN--------------------------- 90

Query: 131 NTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 190
           N+F  + + N+QLS C+I  + P AF   E TLK+LNLQEN+L QVP E L++L+ LTL+
Sbjct: 91  NSFQKLTVHNIQLSGCKIKHVQPRAFWGQENTLKNLNLQENELTQVPTEALKNLQALTLL 150

Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS 250
           DLSKNKI KI D +F+TL NL TLKLSDN                N++L   +FRGLE S
Sbjct: 151 DLSKNKITKISDGAFATL-NLSTLKLSDN----------------NVSLAPFAFRGLENS 193

Query: 251 LKNLNLKNTKLKSV 264
           LKNLNLK TK K +
Sbjct: 194 LKNLNLKGTKQKRI 207

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
FB|FBgn0261509	1316	haf "hattifattener" [Drosophil	0.858	0.175	0.319	2.5e-22
UNIPROTKB|Q86UN3	420	RTN4RL2 "Reticulon-4 receptor-	0.710	0.454	0.291	2.1e-14
RGD|727797	420	Rtn4rl2 "reticulon 4 receptor-	0.710	0.454	0.287	7.2e-14
MGI|MGI:2669796	420	Rtn4rl2 "reticulon 4 receptor-	0.710	0.454	0.287	7.2e-14
MGI|MGI:1341817	907	Lgr5 "leucine rich repeat cont	0.806	0.239	0.280	8.3e-14
RGD|1307733	907	Lgr5 "leucine rich repeat cont	0.806	0.239	0.280	1.3e-13
ZFIN|ZDB-GENE-041008-23	342	fmoda "fibromodulin a" [Danio	0.736	0.578	0.271	3.3e-13
UNIPROTKB|F1NXL1	306	RTN4RL2 "Uncharacterized prote	0.765	0.673	0.303	4.1e-13
UNIPROTKB|F1MT22	907	LGR5 "Uncharacterized protein"	0.806	0.239	0.284	7.2e-13
FB|FBgn0033250	470	CG14762 [Drosophila melanogast	0.613	0.351	0.337	7.9e-13

FB|FBgn0261509 haf "hattifattener" [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 82/257 (31%), Positives = 129/257 (50%)

Query:     7 PFHLVTLILLTALIQG----GSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYP 62
             P     L+LL  LI G      AQCPW+ +   +LQ++CIC+YN   ELS+QC D  ++ 
Sbjct:    11 PAATTPLLLLLPLILGRLHVAHAQCPWQRDVP-DLQTSCICAYNLGRELSVQC-DQVDFS 68

Query:    63 LFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL 122
                A +N H   K P+DLLY+NNS I  + +  F+ + + NLQLS C I  I   AF+  
Sbjct:    69 QLLAAMNTHARLK-PVDLLYVNNSTISELPDAVFSNLSLHNLQLSSCGIQRIATGAFKGQ 127

Query:   123 DAI-RNIN--ENTFNGIFIKNLQ-LSHCRINSITPNAFRHLE---FT----LKHLNLQEN 171
             +++ RN+N  +N    + ++ L+ L    +  ++ N   H+    F     L  L L +N
Sbjct:   128 ESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLNDN 187

Query:   172 DLEQVPVETLRHLK-NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS--- 227
             ++  +     R L+ +L  ++L   K  K+P+ S   L +L  L LS N +     +   
Sbjct:   188 NVT-LASNAFRGLEQSLKNLNLKGTKQRKVPE-SIRGLKSLAFLDLSQNGIKELPGAGGI 245

Query:   228 --FRGLELNNNLTLYKN 242
               F GL+    L L +N
Sbjct:   246 RVFDGLDALTALNLERN 262

GO:0008045 "motor neuron axon guidance" evidence=IMP

UNIPROTKB|Q86UN3 RTN4RL2 "Reticulon-4 receptor-like 2" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 63/216 (29%), Positives = 107/216 (49%)

Query:    41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
             C C Y++   +S Q N+ ++ PL      +          L++ N+ IR +   TF G  
Sbjct:    35 CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRTLRPGTF-GSN 83

Query:   101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGIF-IKNLQLSHCRI 148
             +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct:    84 LLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query:   149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
             +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct:   144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query:   209 NNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
              +L  L L  N L  +++ +FRGL     L L+ NS
Sbjct:   203 GSLDRLLLHGNRLQGVHRAAFRGLSRLTILYLFNNS 238

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0031103 "axon regeneration" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

RGD|727797 Rtn4rl2 "reticulon 4 receptor-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 62/216 (28%), Positives = 107/216 (49%)

Query:    41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
             C C Y++   +S Q N+ ++ PL      +          L++ N+ IR++   TF G  
Sbjct:    35 CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRSLRPGTF-GPN 83

Query:   101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGIF-IKNLQLSHCRI 148
             +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct:    84 LLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query:   149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
             +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct:   144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query:   209 NNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
              +L  L L  N L  +++ +F GL     L L+ NS
Sbjct:   203 GSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNS 238

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0007166 "cell surface receptor signaling pathway" evidence=NAS

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0046658 "anchored to plasma membrane" evidence=ISO;ISS

MGI|MGI:2669796 Rtn4rl2 "reticulon 4 receptor-like 2" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 62/216 (28%), Positives = 107/216 (49%)

Query:    41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF 100
             C C Y++   +S Q N+ ++ PL      +          L++ N+ IR++   TF G  
Sbjct:    35 CTC-YSSPPTVSCQANNFSSVPLSLPPSTQR---------LFLQNNLIRSLRPGTF-GPN 83

Query:   101 IKNLQLSHCRINSITPNAFRHLDAI-----------RNINENTFNGIF-IKNLQLSHCRI 148
             +  L L    +++I P  FRHL A+           R++  +TF G+  +++L L  C++
Sbjct:    84 LLTLWLFSNNLSTIHPGTFRHLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQL 143

Query:   149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
             +S+  N FR L  +L++L LQEN L  +  +    L NL+ + L  N++  + +  F  L
Sbjct:   144 SSLPGNIFRGL-VSLQYLYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGL 202

Query:   209 NNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
              +L  L L  N L  +++ +F GL     L L+ NS
Sbjct:   203 GSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNS 238

GO:0004872 "receptor activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031103 "axon regeneration" evidence=TAS

GO:0031225 "anchored to membrane" evidence=IEA

GO:0045121 "membrane raft" evidence=ISO

GO:0046658 "anchored to plasma membrane" evidence=ISO

MGI|MGI:1341817 Lgr5 "leucine rich repeat containing G protein coupled receptor 5" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 71/253 (28%), Positives = 122/253 (48%)

Query:    10 LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDL------TNYPL 63
             L++L+ L  L+  GS+  P  D       S C C  +    L + C+DL      +N  +
Sbjct:     9 LLSLLALLQLVAAGSS--PGPDAIPRGCPSHCHCELDGRMLLRVDCSDLGLSELPSNLSV 66

Query:    64 FKATLNKHVN--TKVPLDLLY---------INNSAIRNINENTFNGIF-IKNLQLSHCRI 111
             F + L+  +N  +++P  LL+         +  +A+ +I +  F G+  +K L L + ++
Sbjct:    67 FTSYLDLSMNNISQLPASLLHRLCFLEELRLAGNALTHIPKGAFTGLHSLKVLMLQNNQL 126

Query:   112 NSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 171
               +   A ++L +++++            L  +H  I+ + P+ F  L  +L+HL L +N
Sbjct:   127 RQVPEEALQNLRSLQSLR-----------LDANH--ISYVPPSCFSGLH-SLRHLWLDDN 172

Query:   172 DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRG 230
              L  VPV+  R L  L  + L+ NKI  I D +F  L++LV L L +N + +L K  F G
Sbjct:   173 ALTDVPVQAFRSLSALQAMTLALNKIHHIADYAFGNLSSLVVLHLHNNRIHSLGKKCFDG 232

Query:   231 LELNNNLTL-YKN 242
             L     L L Y N
Sbjct:   233 LHSLETLDLNYNN 245

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0048839 "inner ear development" evidence=IDA

RGD|1307733 Lgr5 "leucine rich repeat containing G protein coupled receptor 5" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 71/253 (28%), Positives = 121/253 (47%)

Query:    10 LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDL------TNYPL 63
             L++L+ L  L+  GS   P  D       S C C  +    L + C+DL      +N  +
Sbjct:     9 LLSLLALLQLVAAGSPPRP--DTMPRGCPSYCHCELDGRMLLRVDCSDLGLSELPSNLSV 66

Query:    64 FKATLNKHVN--TKVPLDLLY---------INNSAIRNINENTFNGIF-IKNLQLSHCRI 111
             F + L+  +N  +++P  LL+         +  +A+ +I +  F G+  +K L L + ++
Sbjct:    67 FTSYLDLSMNNISQLPASLLHRLRFLEELRLAGNALTHIPKGAFAGLHSLKVLMLQNNQL 126

Query:   112 NSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 171
               +   A ++L +++++            L  +H  I+ + P+ F  L  +L+HL L +N
Sbjct:   127 RQVPEEALQNLRSLQSLR-----------LDANH--ISYVPPSCFSGLH-SLRHLWLDDN 172

Query:   172 DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRG 230
              L  VPV+  R L  L  + L+ NKI  I D +F  L++LV L L +N + +L K  F G
Sbjct:   173 ALTDVPVQAFRSLSALQAMTLALNKIHHIADHAFGNLSSLVVLHLHNNRIHSLGKKCFDG 232

Query:   231 LELNNNLTL-YKN 242
             L     L L Y N
Sbjct:   233 LHSLETLDLNYNN 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA;ISO

ZFIN|ZDB-GENE-041008-23 fmoda "fibromodulin a" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 59/217 (27%), Positives = 110/217 (50%)

Query:    10 LVTLILLTALIQGGSAQCPWEDESESELQS-TCICSYNTANELSIQCNDLTNYPLFKATL 68
             L+ L+LL  L++   AQ P++  S    +    + + NT  E   +C+    +P+     
Sbjct:     3 LIALLLL-GLMEVSLAQDPFQWLSSLHSRGYASLQADNTGGECPEECDCPPTFPIAMYCD 61

Query:    69 NKHVNTKVP-----LDLLYINNSAIRNINENTF-NGIFIKNLQLSHCRINSITPNAFRHL 122
             N+++  K+P     +  +Y+ ++ I ++ +N F N   +  + L    INS+   AF  L
Sbjct:    62 NRNIQ-KMPYIPSRMKYVYLQHNQITSVPDNAFGNATNLVWVMLHENHINSVGKQAFAKL 120

Query:   123 DAIRNI--NENTFNGI------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 174
               +  +  N N    +       +++L+L+H +I  + PNAF  +E  L  L L  N L+
Sbjct:   121 SNLNRLYLNNNNLTEVPSNLPRSLRDLRLNHNKIGKLAPNAFEGME-NLTILLLHHNSLQ 179

Query:   175 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211
              + V  L+ LK+LTL+D+S+N++ K+P+     L+ L
Sbjct:   180 DIGVG-LKGLKSLTLLDVSRNQLKKVPESLPEMLHQL 215

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NXL1 RTN4RL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 75/247 (30%), Positives = 117/247 (47%)

Query:    14 ILLTAL--IQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKH 71
             +LL AL  + GGS  CP          + C C Y +   +S Q N+ ++ P         
Sbjct:    11 LLLAALAWVPGGSPACP----------ALCTC-YVSPPTVSCQANNFSSVP--------- 50

Query:    72 VNTKVPLDL--LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN 129
               T +P     L++ N+ IR +   TF G     L L    I+SI P  FRHL A+  ++
Sbjct:    51 --TGLPPGARRLFLQNNVIRALRAGTF-GPSTVTLWLYSNNISSIQPGTFRHLPALEELD 107

Query:   130 --EN---------TFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 177
               +N         TF+G+  ++ L L  C++ S+    FR L  +L++L LQEN L  + 
Sbjct:   108 LGDNPHLRVLAPDTFHGLRRLQALHLYRCQLASLPSAIFRGLH-SLQYLYLQENGLLYLQ 166

Query:   178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNN 236
              +    L NL+ + L  N++  + +  F  L +L  L L  N L T+++ +FRGL     
Sbjct:   167 DDLFADLANLSHLFLHGNRLRALSEGVFRGLPSLDRLLLHANRLATVHRRAFRGLARLTI 226

Query:   237 LTLYKNS 243
             L L+ NS
Sbjct:   227 LYLFNNS 233

GO:0004872 "receptor activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0046658 "anchored to plasma membrane" evidence=IEA

UNIPROTKB|F1MT22 LGR5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 72/253 (28%), Positives = 124/253 (49%)

Query:    10 LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCNDL------TNYPL 63
             L++L +L  L  GG +  P          + C C  +    L + C+DL      +N  +
Sbjct:     9 LLSLPVLLQLAAGGGSPRP--GTLLRGCPAHCQCEPDGRMLLRVDCSDLGLSELPSNLSV 66

Query:    64 FKATLNKHVN--TKVP---------LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRI 111
             F + L+  +N  +++P         L+ L +  +A+  I +  F G++ +K L L +  +
Sbjct:    67 FTSYLDLSMNNISQLPPSPLHSLRFLEELRLAGNALTYIPKGAFAGLYSLKVLMLQNNHL 126

Query:   112 NSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 171
               + P      +A++N+         +++L+L   RI+S+ P+ F  L  +L+HL L +N
Sbjct:   127 RQV-PT-----EALQNLRS-------LQSLRLDANRISSVPPSCFSGLH-SLRHLWLDDN 172

Query:   172 DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRG 230
              L ++PV+  R L  L  + L+ NKI  IPD +F  L++LV L L +N + +L K  F G
Sbjct:   173 ALTEIPVQAFRSLSALQAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHSLGKKCFDG 232

Query:   231 LELNNNLTL-YKN 242
             L     L L Y N
Sbjct:   233 LHSLETLDLNYNN 245

GO:0048839 "inner ear development" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033250 CG14762 [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 61/181 (33%), Positives = 91/181 (50%)

Query:    78 LDL--LYINNSAIRNINENTFN--GIFIKNLQLSHCRINSITPNAFRHLD--AIRNINEN 131
             LD+  L I+NS++  I EN  +  G  +  L +S  ++ ++   A +HL    I N+N N
Sbjct:   104 LDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHN 163

Query:   132 --------TFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
                      F G+  ++ L L   +I  I P AFR LE  +K LNL  NDL  +P + L 
Sbjct:   164 KITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTNIPQKALS 223

Query:   183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYK 241
              L  L  +++ +NKI  I +  F  L +L +L L+ N +T    N F  L L N+L L  
Sbjct:   224 ILSTLKKLEIQENKIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEG 283

Query:   242 N 242
             N
Sbjct:   284 N 284

GO:0048812 "neuron projection morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           LK L+L  N L  +P    + L NL ++DLS N +  I  ++FS L +L +L LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 16/76 (21%)

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
           NL  +DLS N++  IPD +F  L NL  L LS NNLT               ++   +F 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT---------------SISPEAFS 45

Query: 246 GLELSLKNLNLKNTKL 261
           GL  SL++L+L    L
Sbjct: 46  GLP-SLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
            IN   ++   ++ L L+  +     P++F      L++L+L  N         L  L  
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSE 500

Query: 187 LTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 222
           L  + LS+NK+ G+IPD+  S+   LV+L LS N L+
Sbjct: 501 LMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 139 KNLQLSHCRINSI----TPNAFRHLEFTLKHLNLQENDLE----QVPVETLRHLKNLTLI 190
           + L L   R+          A R     LK LNL  N +     +   E L+   NL ++
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 191 DLSKNKI----GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
           DL+ N +         ++ ++L +L  L L DNNLT       G        L  ++   
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-----AGA-----AAL-ASALLS 247

Query: 247 LELSLKNLNLKNTKLK 262
             +SL  L+L    + 
Sbjct: 248 PNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           +K+L LS+ R+  I   AF+ L  ++ ++             LS   + SI+P AF  L 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLD-------------LSGNNLTSISPEAFSGLP 48

Query: 161 FTLKHLNLQENDL 173
            +L+ L+L  N+L
Sbjct: 49  -SLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG4194|consensus	873		99.91
KOG4237|consensus	498		99.91
KOG4194|consensus	873		99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
KOG0444|consensus	1255		99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG0617|consensus	264		99.75
KOG0444|consensus	1255		99.72
KOG0472|consensus	565		99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
KOG4237|consensus	498		99.67
KOG0617|consensus	264		99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG0472|consensus	565		99.63
KOG0618|consensus	1081		99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
KOG0618|consensus	1081		99.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.39
KOG0532|consensus	722		99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
KOG1259|consensus	490		99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG0532|consensus	722		99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
KOG1259|consensus	490		99.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG1909|consensus	382		98.95
PLN03150	623	hypothetical protein; Provisional	98.95
PLN03150	623	hypothetical protein; Provisional	98.92
KOG3207|consensus	505		98.88
KOG0531|consensus	414		98.76
KOG0531|consensus	414		98.74
KOG1859|consensus	1096		98.69
KOG3207|consensus	505		98.68
KOG1909|consensus	382		98.67
KOG1644|consensus	233		98.48
KOG4579|consensus	177		98.42
KOG1859|consensus	1096		98.4
KOG4579|consensus	177		98.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG1644|consensus	233		98.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG4658|consensus	889		98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
PRK15386	426	type III secretion protein GogB; Provisional	98.09
KOG3665|consensus	699		98.04
KOG4658|consensus	889		97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.97
KOG2123|consensus	388		97.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.63
KOG2982|consensus	418		97.35
KOG2120|consensus	419		97.31
KOG2982|consensus	418		97.28
KOG3665|consensus	699		97.2
KOG2123|consensus	388		97.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.82
KOG2120|consensus	419		96.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
KOG2739|consensus	260		96.28
KOG2739|consensus	260		96.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.25
smart00370	26	LRR Leucine-rich repeats, outliers.	95.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.23
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	95.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.43
smart00370	26	LRR Leucine-rich repeats, outliers.	94.43
KOG3864|consensus	221		93.99
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	93.7
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.77
KOG0473|consensus	326		92.75
KOG0473|consensus	326		92.4
KOG4308|consensus	478		91.13
KOG3864|consensus	221		89.23
KOG4308|consensus	478		88.09
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.3

>KOG4194|consensus

Probab=99.91  E-value=1.4e-24  Score=188.22  Aligned_cols=225  Identities=25%  Similarity=0.431  Sum_probs=155.2

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchh-----hhhhhhcc------------------CCCCcccEEEecCCCccccC
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLF-----KATLNKHV------------------NTKVPLDLLYINNSAIRNIN   92 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~-----~~~l~~~~------------------~~~~~l~~l~l~~~~i~~l~   92 (269)
                      .||+.|.|..     .-+.|.+ .+++.+     .+.+|...                  ....+|+.+++.+|.+..||
T Consensus        45 ~cpa~c~c~~-----~lldcs~-~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP  118 (873)
T KOG4194|consen   45 ECPATCPCNT-----RLLDCSD-RELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP  118 (873)
T ss_pred             cCCCcCCCCc-----eeeecCc-cccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc
Confidence            6778999975     5677773 333332     33333332                  34455666666666666666


Q ss_pred             cCCCCCCcccEEEecCCCCcccCcccccCCccccccc----------cccccc-ccccEEEcCCCCCCccChhHHhhccc
Q psy10547         93 ENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN----------ENTFNG-IFIKNLQLSHCRINSITPNAFRHLEF  161 (269)
Q Consensus        93 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~----------~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~  161 (269)
                      ...-..-.++.|++.+|.|+.+....++.++.|+.++          .+.|.. .++++|+|++|.|+.+..+.|..+. 
T Consensus       119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-  197 (873)
T KOG4194|consen  119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-  197 (873)
T ss_pred             cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-
Confidence            5443333477777777777777777777777777554          222322 3677778888877777777777777 


Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC------------------------CCCCCCcccCCCCCCEEEcC
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI------------------------GKIPDDSFSTLNNLVTLKLS  217 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i------------------------~~i~~~~~~~l~~L~~L~L~  217 (269)
                      +|..|.|++|+++.++...|+.+++|+.|+|..|+|                        ..+.+++|..+.++++|+|+
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            777777777777777766666666666555555554                        44556677777888888888


Q ss_pred             CCcccccc-ccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        218 DNNLTLYK-NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       218 ~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      .|++..+. .++.+++.|+.|++++|++.++.       .+|++|||+.|+|++++++
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            88888764 47888889999999999888753       5899999999999998875

>KOG4237|consensus

Probab=99.91  E-value=1e-25  Score=187.06  Aligned_cols=133  Identities=24%  Similarity=0.430  Sum_probs=104.3

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||.+|.|....  +..|.|+ ..++.++|..+|...      ..+++..|.|..||+++|..+. |+.|||++|.|+.|
T Consensus        36 ~CP~pC~Cs~~~--g~~VdCr-~~GL~eVP~~LP~~t------veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   36 ACPAPCTCSDVE--GGIVDCR-GKGLTEVPANLPPET------VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI  106 (498)
T ss_pred             cCCCCcccCCCC--CceEEcc-CCCcccCcccCCCcc------eEEEeccCCcccCChhhccchhhhceecccccchhhc
Confidence            455889997533  6789999 788999999999876      8899999999999999999987 99999999999999


Q ss_pred             CcccccCCccccc-----------ccccccccc-cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh
Q psy10547        115 TPNAFRHLDAIRN-----------INENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV  178 (269)
Q Consensus       115 ~~~~~~~l~~L~~-----------l~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~  178 (269)
                      .|++|++++++..           |..+.|.++ +++.|.+.-|.+..+..++|..++ ++..|.+-+|.+..+..
T Consensus       107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~-~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP-SLSLLSLYDNKIQSICK  181 (498)
T ss_pred             ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh-hcchhcccchhhhhhcc
Confidence            9999999986542           234444444 566666666677666667777776 67777776666654443

>KOG4194|consensus

Probab=99.87  E-value=1.3e-23  Score=182.21  Aligned_cols=195  Identities=26%  Similarity=0.459  Sum_probs=130.8

Q ss_pred             ccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc----------ccccccc---
Q psy10547         71 HVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN----------ENTFNGI---  136 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~----------~~~~~~~---  136 (269)
                      .+++..+++.|++++|.|+.+..+.|...+ |..|.++.|+++.+++..|+++++|+.|+          .-.|+|.   
T Consensus       168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            345556778888888888888888888777 88888888888888887888777777543          1112221   


Q ss_pred             ----------------------------------------------cccEEEcCCCCCCccChhHHhhccccccEEEccC
Q psy10547        137 ----------------------------------------------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE  170 (269)
Q Consensus       137 ----------------------------------------------~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~  170 (269)
                                                                    .|+.|++++|+|+.+.++++.... +|++|+|++
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~  326 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSS  326 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccc
Confidence                                                          355556666666666666655555 666666666


Q ss_pred             CCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc----ccccccCcCCCceeeeccCcccc
Q psy10547        171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL----YKNSFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       171 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~p~~~~~l~~L~~l~l~~n~~~~  246 (269)
                      |.++.++++.|..+..|+.|+|++|.++.+.+++|..+.+|+.|+|++|.++.    -...+..+++|+.|.+.+|++..
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence            66666666666666666666666666666666666667777777777776652    22356667777777777776555


Q ss_pred             cc-------cccceeecCCCCCCCCCC
Q psy10547        247 LE-------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       247 l~-------~~L~~L~l~~n~l~~~p~  266 (269)
                      ++       .+|++|||.+|.|-.+-+
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecc
Confidence            44       367777777777766544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=6e-20  Score=178.17  Aligned_cols=193  Identities=23%  Similarity=0.330  Sum_probs=111.6

Q ss_pred             hhhccCCCCcccEEEecCCCcc-ccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc--------
Q psy10547         68 LNKHVNTKVPLDLLYINNSAIR-NINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG--------  135 (269)
Q Consensus        68 l~~~~~~~~~l~~l~l~~~~i~-~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~--------  135 (269)
                      ++..+.....|+.|++++|.+. .+|.+.|.... |++|++++|++++..|.  ..+++|++|+  .|.+.+        
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence            3455566777888899888875 67777774443 77777777777654443  2344455433  222221        


Q ss_pred             -ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEE
Q psy10547        136 -IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL  214 (269)
Q Consensus       136 -~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L  214 (269)
                       .+|++|++++|.+.+..|..+.++. +|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence             1566666666666655555666665 66666666666655545555566666666666665544333355555666666


Q ss_pred             EcCCCccc-cccccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCC
Q psy10547        215 KLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       215 ~L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~  263 (269)
                      ++++|.++ .+|..++++++|+.|++++|.+.+ +|      ++|++|++++|.+.+
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            66666554 345555555555555555555543 11      245555555555543

>KOG0444|consensus

Probab=99.79  E-value=1.2e-20  Score=165.55  Aligned_cols=185  Identities=25%  Similarity=0.357  Sum_probs=131.9

Q ss_pred             hhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCC
Q psy10547         68 LNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCR  147 (269)
Q Consensus        68 l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~  147 (269)
                      +|..+..+..|+++++++|++.++|.+.-.-.++-.|++|+|+|..|+...|.+++             .|-+|||++|.
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-------------DLLfLDLS~Nr  161 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT-------------DLLFLDLSNNR  161 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH-------------hHhhhccccch
Confidence            34455566667777777777777776665555566777777777777666666666             66677888888


Q ss_pred             CCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC--CCCCCCcccCCCCCCEEEcCCCcccccc
Q psy10547        148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI--GKIPDDSFSTLNNLVTLKLSDNNLTLYK  225 (269)
Q Consensus       148 i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~p  225 (269)
                      +..++| ..+.+. .|+.|++++|++....-..+..+++|+.|.+++++-  ..+|. ++..+.+|..++++.|.+..+|
T Consensus       162 Le~LPP-Q~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~vP  238 (1255)
T KOG0444|consen  162 LEMLPP-QIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIVP  238 (1255)
T ss_pred             hhhcCH-HHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCcch
Confidence            777766 456676 788888888877655444455556666777776653  35554 6777788888888888888888


Q ss_pred             ccccCcCCCceeeeccCcccccc------cccceeecCCCCCCCCCCCC
Q psy10547        226 NSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       226 ~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      +.+-++.+|+.|++++|.++.+.      .++++|++|.|+++.+|+.+
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence            88888888888888888887754      46778888888888777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=2.1e-18  Score=167.48  Aligned_cols=189  Identities=26%  Similarity=0.319  Sum_probs=119.0

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccc--cccccc---------ccccEE
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------IFIKNL  141 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~~L~~L  141 (269)
                      ....|+.|++++|.+....+..+... +|+.|++++|.+.+..|..+.++++|++|+  .|.+.+         .+|+.|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            35567888888887764333333333 478888888887777777777777777664  222221         166777


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      ++++|.+++..|..+..+. +|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            7777777766666676776 777777777777665556666677777777777766544444566666666666666666


Q ss_pred             c-cccccccCcCCCceeeeccCccccc-c------cccceeecCCCCCCC
Q psy10547        222 T-LYKNSFRGLELNNNLTLYKNSFRGL-E------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       222 ~-~~p~~~~~l~~L~~l~l~~n~~~~l-~------~~L~~L~l~~n~l~~  263 (269)
                      . .+|..+..+++|+.|++++|.+.+. |      ++|+.|++++|++.+
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence            5 3555566666666666666655431 1      255555665555553

>KOG0617|consensus

Probab=99.75  E-value=2.6e-20  Score=139.17  Aligned_cols=157  Identities=25%  Similarity=0.383  Sum_probs=121.1

Q ss_pred             CCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCC
Q psy10547         95 TFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus        95 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~  174 (269)
                      .|....++.|.+++|+++.++| ..+.+.             +|+.|++++|++++++ ..++.++ +|+.|+++-|++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vpp-nia~l~-------------nlevln~~nnqie~lp-~~issl~-klr~lnvgmnrl~   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPP-NIAELK-------------NLEVLNLSNNQIEELP-TSISSLP-KLRILNVGMNRLN   92 (264)
T ss_pred             ccchhhhhhhhcccCceeecCC-cHHHhh-------------hhhhhhcccchhhhcC-hhhhhch-hhhheecchhhhh
Confidence            3444447788888888887755 456666             6778888888888874 4677787 8888888888887


Q ss_pred             ccChhhhcCCCCCCEEeccCCCCC-CCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----
Q psy10547        175 QVPVETLRHLKNLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----  248 (269)
Q Consensus       175 ~~~~~~~~~l~~L~~L~l~~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----  248 (269)
                      .+|. .|+.++.|+.||++.|.+. ...++.|..+..|+.|+|++|.++.+|+.++++++|+.|.++.|.+-.+|     
T Consensus        93 ~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~  171 (264)
T KOG0617|consen   93 ILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD  171 (264)
T ss_pred             cCcc-ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHH
Confidence            7774 4888888888888888773 22334666788888888888888888888888888888888888887776     


Q ss_pred             -cccceeecCCCCCCCCCCCC
Q psy10547        249 -LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       249 -~~L~~L~l~~n~l~~~p~~~  268 (269)
                       ++|++|.+.+|+++-+||++
T Consensus       172 lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHhcccceeeecChhh
Confidence             46778888888888888875

>KOG0444|consensus

Probab=99.72  E-value=4.1e-19  Score=155.97  Aligned_cols=177  Identities=23%  Similarity=0.332  Sum_probs=148.2

Q ss_pred             CCCcccEEEecCCCcc--ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCcc
Q psy10547         74 TKVPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI  151 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~  151 (269)
                      .+..|+.+.+++|++.  .||.++|....|+.||+|+|+++.+ |..+...+             ++.+|+|++|+|..+
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AK-------------n~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAK-------------NSIVLNLSYNNIETI  141 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhc-------------CcEEEEcccCccccC
Confidence            3344566777777654  6788888887788888888888876 55566666             788999999999999


Q ss_pred             ChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc--ccccccc
Q psy10547        152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFR  229 (269)
Q Consensus       152 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~--~~p~~~~  229 (269)
                      +-..|-++. .|-.||+++|++..+||. .+.+..|++|++++|.+...--.-+..+++|+.|++++.+-+  .+|.++.
T Consensus       142 Pn~lfinLt-DLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  142 PNSLFINLT-DLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             CchHHHhhH-hHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            888899998 899999999999999975 888999999999999886554445667788999999988755  6899999


Q ss_pred             CcCCCceeeeccCcccccc------cccceeecCCCCCCCCCC
Q psy10547        230 GLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       230 ~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~  266 (269)
                      .+.+|..+|++.|.+..+|      .+|+.|+||+|+|+++--
T Consensus       220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec
Confidence            9999999999999999887      689999999999998754

>KOG0472|consensus

Probab=99.72  E-value=1.1e-19  Score=151.85  Aligned_cols=187  Identities=24%  Similarity=0.345  Sum_probs=145.5

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc----------ccccccccccEEEcCCC
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN----------ENTFNGIFIKNLQLSHC  146 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~----------~~~~~~~~L~~L~l~~n  146 (269)
                      .+..++.++|.+..+|....+...+.+++.++|++..+.+. +..+..++.++          .+.+...++..+++.+|
T Consensus        92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n  170 (565)
T KOG0472|consen   92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN  170 (565)
T ss_pred             HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc
Confidence            35667777777777777777777777777777777766443 33333343332          23333337888899999


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~  226 (269)
                      .+...+|+.+. ++ .|+++|..+|-+..+|++ ++.+.+|+.|++..|++..+|.  |.++..|++++++.|+|+.+|.
T Consensus       171 ~l~~l~~~~i~-m~-~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpa  245 (565)
T KOG0472|consen  171 KLKALPENHIA-MK-RLKHLDCNSNLLETLPPE-LGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPA  245 (565)
T ss_pred             chhhCCHHHHH-HH-HHHhcccchhhhhcCChh-hcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHH
Confidence            99988887765 77 899999999999988865 8889999999999999999984  8888889999999999988887


Q ss_pred             ccc-CcCCCceeeeccCcccccc------cccceeecCCCCCCCCCCCCC
Q psy10547        227 SFR-GLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTPYWR  269 (269)
Q Consensus       227 ~~~-~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~~~~  269 (269)
                      +.. +++++..||++.|+++++|      ++|..||+|+|.|+.+|++++
T Consensus       246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLg  295 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLG  295 (565)
T ss_pred             HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence            655 8899999999999999887      678899999999999998764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=1.9e-16  Score=147.12  Aligned_cols=172  Identities=22%  Similarity=0.370  Sum_probs=92.7

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc--cccccccc------cccEEEcCCCCCC
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI--NENTFNGI------FIKNLQLSHCRIN  149 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l--~~~~~~~~------~L~~L~l~~n~i~  149 (269)
                      ++.|++++|.+..+|...+.  +|++|++++|.++.++....   .+|+.|  +.|.+...      +|+.|++++|.++
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~--nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~  275 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLPSALQSLDLFHNKIS  275 (754)
T ss_pred             CcEEEecCCCCCcCChhhcc--CCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHhCCCCEEECcCCccC
Confidence            58889999998888877653  57888888888887643222   223322  12222211      5666677776666


Q ss_pred             ccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccccc
Q psy10547        150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR  229 (269)
Q Consensus       150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~  229 (269)
                      .++. .+.  . +|+.|++++|+++.++.. +.  ++|+.|++++|.++.+|.. +  .++|+.|++++|.++.+|..+.
T Consensus       276 ~LP~-~l~--~-sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~l~  345 (754)
T PRK15370        276 CLPE-NLP--E-ELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTSLPASLP  345 (754)
T ss_pred             cccc-ccC--C-CCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccCCcc-c--cccceeccccCCccccCChhhc
Confidence            5432 221  2 566667766666665432 11  2344444555544444431 1  1345555555555555544332


Q ss_pred             CcCCCceeeeccCcccccc----cccceeecCCCCCCCCCC
Q psy10547        230 GLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       230 ~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p~  266 (269)
                        ++|+.|++++|+|..+|    ++|++|++++|+|+.+|+
T Consensus       346 --~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        346 --PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPE  384 (754)
T ss_pred             --CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCH
Confidence              34555555555554332    345555555555555554

>KOG4237|consensus

Probab=99.67  E-value=9.9e-18  Score=139.83  Aligned_cols=149  Identities=28%  Similarity=0.426  Sum_probs=132.1

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      .+++.++-.+.++|.+.-...  +.++|..|+|+.|++++|+.++             +|+.|||++|+|+.+.|++|.+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~t--veirLdqN~I~~iP~~aF~~l~-------------~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPET--VEIRLDQNQISSIPPGAFKTLH-------------RLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccCCCcc--eEEEeccCCcccCChhhccchh-------------hhceecccccchhhcChHhhhh
Confidence            568888888999998875544  8899999999999999999999             8888999999999999999999


Q ss_pred             ccccccEEEccC-CCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCce
Q psy10547        159 LEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNN  236 (269)
Q Consensus       159 l~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~  236 (269)
                      +. ++..|-+-+ |+|+.++.+.|.++..++.|.+.-|++.-+..++|..++++..|.+.+|.+..+++ .+..+..++.
T Consensus       114 L~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  114 LA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT  192 (498)
T ss_pred             hH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence            99 666665555 99999999999999999999999999999998899999999999999999988876 7888888888


Q ss_pred             eeeccCc
Q psy10547        237 LTLYKNS  243 (269)
Q Consensus       237 l~l~~n~  243 (269)
                      +.+..|.
T Consensus       193 lhlA~np  199 (498)
T KOG4237|consen  193 LHLAQNP  199 (498)
T ss_pred             HhhhcCc
Confidence            8777765

>KOG0617|consensus

Probab=99.66  E-value=6.7e-19  Score=131.62  Aligned_cols=170  Identities=23%  Similarity=0.318  Sum_probs=152.0

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      .+...+-|.+++|.+..+|+++-...+|+.|++++|++... |.....++             .|+.|+++.|.+... |
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l-p~~issl~-------------klr~lnvgmnrl~~l-p   95 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLP-------------KLRILNVGMNRLNIL-P   95 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc-Chhhhhch-------------hhhheecchhhhhcC-c
Confidence            55667889999999999999999989999999999999988 55677888             788899999988755 6


Q ss_pred             hHHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE  232 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~  232 (269)
                      ..|+.++ .|+.||+.+|++.. ..|+.|..+..|+.|.+++|.+.-+|+ .++.+++|+.|.+.+|.+-++|..++.++
T Consensus        96 rgfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpkeig~lt  173 (264)
T KOG0617|consen   96 RGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDLT  173 (264)
T ss_pred             cccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHHHHHHH
Confidence            7899998 99999999999884 445778888999999999999999987 58999999999999999999999999999


Q ss_pred             CCceeeeccCcccccccccceeecCCCC
Q psy10547        233 LNNNLTLYKNSFRGLELSLKNLNLKNTK  260 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~~~L~~L~l~~n~  260 (269)
                      .|+.|.+.+|+++-+|+.+..||+-+++
T Consensus       174 ~lrelhiqgnrl~vlppel~~l~l~~~k  201 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVLPPELANLDLVGNK  201 (264)
T ss_pred             HHHHHhcccceeeecChhhhhhhhhhhH
Confidence            9999999999999999899988887764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=3.2e-15  Score=138.63  Aligned_cols=199  Identities=19%  Similarity=0.230  Sum_probs=99.5

Q ss_pred             CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCccc
Q psy10547         39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNA  118 (269)
Q Consensus        39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~  118 (269)
                      ..+.|.......+.+...+++.+|   ..++.      .++.|++.+|.+..+|..   ..+|++|++++|+++.+++ .
T Consensus       194 r~~~Cl~~~~~~LdLs~~~LtsLP---~~l~~------~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~-l  260 (788)
T PRK15387        194 KMRACLNNGNAVLNVGESGLTTLP---DCLPA------HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV-L  260 (788)
T ss_pred             HHHHHhcCCCcEEEcCCCCCCcCC---cchhc------CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC-c
Confidence            334554433334434444444444   33333      358888888888888753   2348888888888887742 2


Q ss_pred             ccCCccccccc--cccccc-----ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh--hh--------
Q psy10547        119 FRHLDAIRNIN--ENTFNG-----IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE--TL--------  181 (269)
Q Consensus       119 ~~~l~~L~~l~--~~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~--~~--------  181 (269)
                      +   ++|+.|+  .|.+..     .+|+.|++++|.++.++.    ..+ +|+.|++++|+++.++..  .+        
T Consensus       261 p---~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~-~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N  332 (788)
T PRK15387        261 P---PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPP-GLQELSVSDNQLASLPALPSELCKLWAYNN  332 (788)
T ss_pred             c---cccceeeccCCchhhhhhchhhcCEEECcCCccccccc----ccc-ccceeECCCCccccCCCCcccccccccccC
Confidence            2   3333332  222221     145556666666655432    122 566666666665554320  00        


Q ss_pred             --c----CCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc---cccc
Q psy10547        182 --R----HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE---LSLK  252 (269)
Q Consensus       182 --~----~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~---~~L~  252 (269)
                        .    ...+|+.|++++|+++.+|..    ..+|+.|++++|+++.+|...   .+|+.|++++|.|+++|   ++|+
T Consensus       333 ~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l~s~L~  405 (788)
T PRK15387        333 QLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELK  405 (788)
T ss_pred             ccccccccccccceEecCCCccCCCCCC----CcccceehhhccccccCcccc---cccceEEecCCcccCCCCcccCCC
Confidence              0    013566777777777666531    123444444444444444221   23445555555554433   3444


Q ss_pred             eeecCCCCCCCCC
Q psy10547        253 NLNLKNTKLKSVT  265 (269)
Q Consensus       253 ~L~l~~n~l~~~p  265 (269)
                      .|++++|+|+.+|
T Consensus       406 ~LdLS~N~LssIP  418 (788)
T PRK15387        406 ELMVSGNRLTSLP  418 (788)
T ss_pred             EEEccCCcCCCCC
Confidence            4555555444444

>KOG0472|consensus

Probab=99.63  E-value=1.3e-18  Score=145.50  Aligned_cols=188  Identities=21%  Similarity=0.340  Sum_probs=147.0

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc----------cccccccccccEE
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI----------NENTFNGIFIKNL  141 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l----------~~~~~~~~~L~~L  141 (269)
                      ......+..+++++|.+..++++.+....++.++..+|++...++ .+..+.++..+          .++...-..+++|
T Consensus       110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence            334444566777777777777777666666667777777666633 33333333322          1222222279999


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      |...|-++.++| .++.+. +|.-|++.+|++..+|  .|.++..|..+.++.|+|.-+|....++++++.+||+.+|++
T Consensus       189 d~~~N~L~tlP~-~lg~l~-~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  189 DCNSNLLETLPP-ELGGLE-SLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             ccchhhhhcCCh-hhcchh-hhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            999999998865 678888 9999999999999998  599999999999999999999988788999999999999999


Q ss_pred             ccccccccCcCCCceeeeccCccccccc-----ccceeecCCCCCCCC
Q psy10547        222 TLYKNSFRGLELNNNLTLYKNSFRGLEL-----SLKNLNLKNTKLKSV  264 (269)
Q Consensus       222 ~~~p~~~~~l~~L~~l~l~~n~~~~l~~-----~L~~L~l~~n~l~~~  264 (269)
                      .++|..+..+.+|+.||+++|.++++|.     .|+.|.+.+|++..+
T Consensus       265 ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  265 KEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTI  312 (565)
T ss_pred             ccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHH
Confidence            9999999999999999999999999884     466677888888764

>KOG0618|consensus

Probab=99.62  E-value=3.2e-17  Score=149.27  Aligned_cols=191  Identities=24%  Similarity=0.301  Sum_probs=156.2

Q ss_pred             hhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcc-ccccc-----------ccccc
Q psy10547         67 TLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDA-IRNIN-----------ENTFN  134 (269)
Q Consensus        67 ~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~-----------~~~~~  134 (269)
                      ++|........|..+.+.+|.+..+|+..-....|++|++..|++...++..|.-+.. ++.++           .+.+.
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            3444445666678888888888888876655555888888888888776655544433 33222           11111


Q ss_pred             cccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEE
Q psy10547        135 GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL  214 (269)
Q Consensus       135 ~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L  214 (269)
                      ...|+.|++.+|.+++-....+.+.+ .|+.|+|++|++..+|+..+.+++.|+.|++|||+++.++. .+..+..|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHH
Confidence            22789999999999998777888998 99999999999999999999999999999999999999995 78899999999


Q ss_pred             EcCCCccccccccccCcCCCceeeeccCcccc------cc-cccceeecCCCC
Q psy10547        215 KLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG------LE-LSLKNLNLKNTK  260 (269)
Q Consensus       215 ~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~------l~-~~L~~L~l~~n~  260 (269)
                      ....|++..+| .+..++.|+.+|++.|+++.      +| ++|++||+++|.
T Consensus       436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99999999999 89999999999999999986      35 799999999997

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=3.5e-15  Score=138.32  Aligned_cols=94  Identities=21%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeecc
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK  241 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~  241 (269)
                      +|++|++++|+++.++..    ..+|+.|++++|.+..+|..    ..+|+.|++++|.|+.+|...   +.|+.|++++
T Consensus       343 ~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~  411 (788)
T PRK15387        343 GLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVLP---SELKELMVSG  411 (788)
T ss_pred             ccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccccceEEecCCcccCCCCcc---cCCCEEEccC
Confidence            577777777777776531    23455555666665555431    134555555555555544322   3344555555


Q ss_pred             Ccccccc---cccceeecCCCCCCCCCC
Q psy10547        242 NSFRGLE---LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       242 n~~~~l~---~~L~~L~l~~n~l~~~p~  266 (269)
                      |.++.+|   .+|+.|++++|+|+.+|.
T Consensus       412 N~LssIP~l~~~L~~L~Ls~NqLt~LP~  439 (788)
T PRK15387        412 NRLTSLPMLPSGLLSLSVYRNQLTRLPE  439 (788)
T ss_pred             CcCCCCCcchhhhhhhhhccCcccccCh
Confidence            5554443   234444555555554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=1.9e-15  Score=140.58  Aligned_cols=174  Identities=20%  Similarity=0.336  Sum_probs=122.6

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc------ccccEEEcCCCCC
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHCRI  148 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n~i  148 (269)
                      +|+.|++++|.+..+|.....  .|+.|++++|.+..++....   .+|+.|+  .|.+..      .+|+.|++++|.+
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~~--~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLPD--TIQEMELSINRITELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSI  295 (754)
T ss_pred             CCCEEECCCCccccCChhhhc--cccEEECcCCccCcCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCcc
Confidence            578888888888888765432  37888888888776643322   2344332  222221      2788999999999


Q ss_pred             CccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccc
Q psy10547        149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF  228 (269)
Q Consensus       149 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~  228 (269)
                      +.++. .+.  . +|+.|++++|+++.++...   .++|+.|++++|.++.+|. .+.  ++|+.|++++|+++.+|..+
T Consensus       296 t~LP~-~lp--~-sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~-~l~--~sL~~L~Ls~N~L~~LP~~l  365 (754)
T PRK15370        296 RTLPA-HLP--S-GITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPA-SLP--PELQVLDVSKNQITVLPETL  365 (754)
T ss_pred             ccCcc-cch--h-hHHHHHhcCCccccCCccc---cccceeccccCCccccCCh-hhc--CcccEEECCCCCCCcCChhh
Confidence            87753 221  2 6888888888888776432   2578888888888888775 332  67888888888888777655


Q ss_pred             cCcCCCceeeeccCcccccc----cccceeecCCCCCCCCCCC
Q psy10547        229 RGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       229 ~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p~~  267 (269)
                      .  ++|+.|++++|.+..+|    ..|+.|++++|+|+.+|..
T Consensus       366 p--~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~s  406 (754)
T PRK15370        366 P--PTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPES  406 (754)
T ss_pred             c--CCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCchh
Confidence            3  57888888888888776    4577888888888887754

>KOG0618|consensus

Probab=99.51  E-value=6e-16  Score=141.12  Aligned_cols=173  Identities=24%  Similarity=0.311  Sum_probs=126.1

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      ++.++..+|++..+|...+....|+.|.+..|.+..+.+ ...+++             ++++|+|..|.+...++..|.
T Consensus       266 le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~-------------sL~tLdL~~N~L~~lp~~~l~  331 (1081)
T KOG0618|consen  266 LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLK-------------SLRTLDLQSNNLPSLPDNFLA  331 (1081)
T ss_pred             ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccc-------------eeeeeeehhccccccchHHHh
Confidence            344444444444444444444444444444444444422 233334             677788888877766543332


Q ss_pred             hcc------------------------ccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCE
Q psy10547        158 HLE------------------------FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT  213 (269)
Q Consensus       158 ~l~------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~  213 (269)
                      ...                        +.|+.|.+.+|.++.-.-..+....+|+.|+|++|+++.+|+..+..+..|++
T Consensus       332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE  411 (1081)
T ss_pred             hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence            111                        25777778888877655556888899999999999999999999999999999


Q ss_pred             EEcCCCccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCC
Q psy10547        214 LKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       214 L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~  264 (269)
                      |+|++|.++.+|..+-.+..|++|....|++..+|     +.|+++|++.|.|+++
T Consensus       412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             HhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhh
Confidence            99999999999999999999999999999998876     6899999999999863

>PLN03210 Resistant to P

Probab=99.39  E-value=5e-12  Score=124.47  Aligned_cols=81  Identities=27%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             CCCCEEeccCCCC-CCCCCCcccCCCCCCEEEcCCC-ccccccccccCcCCCceeeeccCc-cc---ccccccceeecCC
Q psy10547        185 KNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELNNNLTLYKNS-FR---GLELSLKNLNLKN  258 (269)
Q Consensus       185 ~~L~~L~l~~n~i-~~i~~~~~~~l~~L~~L~L~~n-~l~~~p~~~~~l~~L~~l~l~~n~-~~---~l~~~L~~L~l~~  258 (269)
                      ++|+.|++++|.. ..+|. .+.++++|+.|++++| .+..+|..+ .+++|+.|++++|. +.   .++.+++.|++++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             ccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            3566666666643 44443 5666777777777765 455566544 55666666666542 22   2234666666666


Q ss_pred             CCCCCCCCC
Q psy10547        259 TKLKSVTPY  267 (269)
Q Consensus       259 n~l~~~p~~  267 (269)
                      |.++.+|.+
T Consensus       856 n~i~~iP~s  864 (1153)
T PLN03210        856 TGIEEVPWW  864 (1153)
T ss_pred             CCCccChHH
Confidence            666666644

syringae 6; Provisional

>KOG0532|consensus

Probab=99.38  E-value=7.3e-15  Score=127.98  Aligned_cols=173  Identities=25%  Similarity=0.322  Sum_probs=131.0

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..-...+++.|.+..+|.++-....|+.+.+..|.+..+ |.+...+.             .+.+++++.|+++.++. .
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~-------------~lt~l~ls~NqlS~lp~-~  139 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI-PEAICNLE-------------ALTFLDLSSNQLSHLPD-G  139 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceec-chhhhhhh-------------HHHHhhhccchhhcCCh-h
Confidence            334556677777777766654444566667777776666 44555555             67778888888887755 4


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN  235 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~  235 (269)
                      +-.++  |+.|-+++|+++.++.+ ++.+..|..||.+.|.+..+++ -+.++.+|+.|.+.+|++..+|+.+..++ |.
T Consensus       140 lC~lp--Lkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li  214 (722)
T KOG0532|consen  140 LCDLP--LKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEELCSLP-LI  214 (722)
T ss_pred             hhcCc--ceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHHHhCCc-ee
Confidence            44565  88888888888888754 6678888888888888888887 47788888888888888888888888654 78


Q ss_pred             eeeeccCcccccc------cccceeecCCCCCCCCCCCC
Q psy10547        236 NLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       236 ~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      .||++.|++..+|      +.|++|-|.+|+++..|.+|
T Consensus       215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             eeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            8888888888877      67888888889888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=3.6e-13  Score=114.77  Aligned_cols=187  Identities=21%  Similarity=0.278  Sum_probs=129.3

Q ss_pred             hhhhhhccCCCCcccEEEecCCCccccCc------CCCC-CCcccEEEecCCCCcccCcccccCCccccccccccccccc
Q psy10547         65 KATLNKHVNTKVPLDLLYINNSAIRNINE------NTFN-GIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF  137 (269)
Q Consensus        65 ~~~l~~~~~~~~~l~~l~l~~~~i~~l~~------~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  137 (269)
                      ...++..+.....++.++++++.+...+.      ..+. ...|++|++++|.+....+..+..+.+-          .+
T Consensus        40 ~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~----------~~  109 (319)
T cd00116          40 AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS----------SS  109 (319)
T ss_pred             HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc----------Cc
Confidence            33455555555667888888776653111      1222 2238888888888876555555444410          04


Q ss_pred             ccEEEcCCCCCCccC----hhHHhhc-cccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCC----CCc
Q psy10547        138 IKNLQLSHCRINSIT----PNAFRHL-EFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIP----DDS  204 (269)
Q Consensus       138 L~~L~l~~n~i~~~~----~~~~~~l-~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~----~~~  204 (269)
                      ++.|++++|.+++..    ...+... + +|++|++++|.++.-    ....+..+++|+.|++++|.++...    ...
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            899999999887422    2344555 5 899999999998832    2245667789999999999887421    113


Q ss_pred             ccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCccccc---------c---cccceeecCCCCCC
Q psy10547        205 FSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSFRGL---------E---LSLKNLNLKNTKLK  262 (269)
Q Consensus       205 ~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~l---------~---~~L~~L~l~~n~l~  262 (269)
                      +...++|+.|++++|.++.     +...+..+++|++|++++|.+.+.         +   ..|+.|++++|.++
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            4455799999999999862     445677889999999999988851         1   58999999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=1.4e-12  Score=111.05  Aligned_cols=189  Identities=23%  Similarity=0.289  Sum_probs=135.2

Q ss_pred             chhhhhhhhccCCCCcccEEEecCCCccccCcCCCC----CCcccEEEecCCCCcccC----cccccCC-cccccccccc
Q psy10547         62 PLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFN----GIFIKNLQLSHCRINSIT----PNAFRHL-DAIRNINENT  132 (269)
Q Consensus        62 ~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~----~~~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~l~~~~  132 (269)
                      +.....++..+.....++.|+++++.+.......+.    ...|++|++++|.+....    ...+..+ +         
T Consensus        67 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~---------  137 (319)
T cd00116          67 PRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP---------  137 (319)
T ss_pred             chHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC---------
Confidence            455556666666788899999999998743333221    123999999999987422    2233444 4         


Q ss_pred             cccccccEEEcCCCCCCccC----hhHHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCCC--
Q psy10547        133 FNGIFIKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIPD--  202 (269)
Q Consensus       133 ~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~~--  202 (269)
                          +++.|++++|.+++..    ...+.... +|++|++++|.+++.    ....+..+++|+.|++++|.++....  
T Consensus       138 ----~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  212 (319)
T cd00116         138 ----ALEKLVLGRNRLEGASCEALAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA  212 (319)
T ss_pred             ----CceEEEcCCCcCCchHHHHHHHHHHhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence                7899999999998432    23455566 899999999998842    12345566899999999999864432  


Q ss_pred             --CcccCCCCCCEEEcCCCccccc-ccccc-----CcCCCceeeeccCcccc---------cc--cccceeecCCCCCCC
Q psy10547        203 --DSFSTLNNLVTLKLSDNNLTLY-KNSFR-----GLELNNNLTLYKNSFRG---------LE--LSLKNLNLKNTKLKS  263 (269)
Q Consensus       203 --~~~~~l~~L~~L~L~~n~l~~~-p~~~~-----~l~~L~~l~l~~n~~~~---------l~--~~L~~L~l~~n~l~~  263 (269)
                        ..+..+++|++|++++|.++.. ...+.     ....|++|++++|.+++         ++  ++|+++++++|.++.
T Consensus       213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence              2456778999999999998741 11111     24789999999999963         22  579999999999985


Q ss_pred             C
Q psy10547        264 V  264 (269)
Q Consensus       264 ~  264 (269)
                      .
T Consensus       293 ~  293 (319)
T cd00116         293 E  293 (319)
T ss_pred             H
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.32  E-value=3.3e-11  Score=118.75  Aligned_cols=100  Identities=18%  Similarity=0.294  Sum_probs=54.8

Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCC-CCCCCCCCcccCCCCCCEEEcCCC-ccccccccccCcCCCceeee
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN-KIGKIPDDSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELNNNLTL  239 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~p~~~~~l~~L~~l~l  239 (269)
                      +|+.|++++|......|..++.+++|+.|++++| .+..+|.. + .+++|+.|++++| .+..+|..   ..+++.|++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            5677777776544434455777888888888776 35666543 2 4555666666554 23333321   234455555


Q ss_pred             ccCcccccc------cccceeecCC-CCCCCCCC
Q psy10547        240 YKNSFRGLE------LSLKNLNLKN-TKLKSVTP  266 (269)
Q Consensus       240 ~~n~~~~l~------~~L~~L~l~~-n~l~~~p~  266 (269)
                      ++|.++.+|      ++|++|++++ ++++.+|.
T Consensus       854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            555555443      3455555554 34444443

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=2.4e-12  Score=99.26  Aligned_cols=120  Identities=28%  Similarity=0.382  Sum_probs=41.9

Q ss_pred             ccEEEecCCCCcccCccccc-CCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        101 IKNLQLSHCRINSITPNAFR-HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      +++|++++|.|+.|..  +. .+.             +++.|++++|.|+.+.  .+..+. .|++|++++|+++.+...
T Consensus        21 ~~~L~L~~n~I~~Ie~--L~~~l~-------------~L~~L~Ls~N~I~~l~--~l~~L~-~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen   21 LRELNLRGNQISTIEN--LGATLD-------------KLEVLDLSNNQITKLE--GLPGLP-RLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ---------------S----TT-T-------------T--EEE-TTS--S--T--T----T-T--EEE--SS---S-CHH
T ss_pred             cccccccccccccccc--hhhhhc-------------CCCEEECCCCCCcccc--CccChh-hhhhcccCCCCCCccccc
Confidence            5677777777776642  22 344             5677777777777763  355666 777777777777777543


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccccccc----cccCcCCCceee
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLT  238 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~  238 (269)
                      ....+++|+.|++++|+|..+.. ..+..+++|+.|++.+|.++.-+.    .+..+++|+.||
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            23456777777777777765543 245566777777777777764433    244556666655

>KOG1259|consensus

Probab=99.31  E-value=4.8e-13  Score=108.74  Aligned_cols=196  Identities=24%  Similarity=0.286  Sum_probs=141.0

Q ss_pred             hhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc---cccccccc----
Q psy10547         64 FKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI---NENTFNGI----  136 (269)
Q Consensus        64 ~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l---~~~~~~~~----  136 (269)
                      .++.+|-.++...+|+.+.++++.-..|-.-......|.++.+.+..+....  .+-.++.+...   ..+...|.    
T Consensus       202 ~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~--~l~pe~~~~D~~~~E~~t~~G~~~~~  279 (490)
T KOG1259|consen  202 IPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP--SLLPETILADPSGSEPSTSNGSALVS  279 (490)
T ss_pred             cccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc--cccchhhhcCccCCCCCccCCceEEe
Confidence            3445555555666677788877765555444444445777777666544321  11111221111   01122222    


Q ss_pred             -----cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q psy10547        137 -----FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL  211 (269)
Q Consensus       137 -----~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L  211 (269)
                           .|+.+|+++|.|+.+.. +..-++ +++.|++++|.+..+..  +..+++|..||+++|.++++.. +-..+-++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDE-SvKL~P-kir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNI  354 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDE-SVKLAP-KLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNI  354 (490)
T ss_pred             cchHhhhhhccccccchhhhhh-hhhhcc-ceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCE
Confidence                 58899999999998864 555566 99999999999999864  8889999999999999998874 55677899


Q ss_pred             CEEEcCCCccccccccccCcCCCceeeeccCcccccc--------cccceeecCCCCCCCCCCC
Q psy10547        212 VTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       212 ~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.|.|+.|.++.+. .++.+.+|..||+++|++..+.        +-|+++.|.+|++..+|.+
T Consensus       355 KtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  355 KTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            99999999998765 5788999999999999887532        3789999999999988763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1.7e-12  Score=100.01  Aligned_cols=116  Identities=28%  Similarity=0.360  Sum_probs=49.7

Q ss_pred             cccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 FIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                      .++.|+|++|.|+.+..  +. .+. +++.|++++|.++.+.  .+..++.|+.|++++|.|+++.+.....+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~--L~~~l~-~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN--LGATLD-KLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ----------------S----TT-T-T--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccc--hhhhhc-CCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            57889999999998743  44 456 8999999999999986  388899999999999999999753334688999999


Q ss_pred             cCCCcccccc--ccccCcCCCceeeeccCcccccc----------cccceeecC
Q psy10547        216 LSDNNLTLYK--NSFRGLELNNNLTLYKNSFRGLE----------LSLKNLNLK  257 (269)
Q Consensus       216 L~~n~l~~~p--~~~~~l~~L~~l~l~~n~~~~l~----------~~L~~L~l~  257 (269)
                      +++|+|..+.  ..+..+++|+.|++.+|++...+          ++|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9999998654  36778899999999999988632          478887753

>KOG0532|consensus

Probab=99.28  E-value=1.5e-13  Score=119.99  Aligned_cols=171  Identities=23%  Similarity=0.351  Sum_probs=145.8

Q ss_pred             cEEEecCCCccccCcCCCCCCc---ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         79 DLLYINNSAIRNINENTFNGIF---IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      -.|.|++..+..+|...+. +.   -...+++.|++..+ |..+..+.             .|+.+.+..|.+..+ |.+
T Consensus        53 g~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~el-p~~~~~f~-------------~Le~liLy~n~~r~i-p~~  116 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSEL-PEEACAFV-------------SLESLILYHNCIRTI-PEA  116 (722)
T ss_pred             cccccccchhhcCCCcccc-ccccchhhhhccccccccC-chHHHHHH-------------HHHHHHHHhccceec-chh
Confidence            4688888888999888877 43   56789999999888 44555566             677889999998877 457


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN  235 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~  235 (269)
                      +..+. .|.+++++.|.++.++.. +..++ |+.|.+++|+++.+|++ +.....|..|+.+.|.+..+|..++++.+|+
T Consensus       117 i~~L~-~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr  192 (722)
T KOG0532|consen  117 ICNLE-ALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLR  192 (722)
T ss_pred             hhhhh-HHHHhhhccchhhcCChh-hhcCc-ceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHH
Confidence            78888 899999999999999876 55555 89999999999999984 6788899999999999999999999999999


Q ss_pred             eeeeccCccccccc-----ccceeecCCCCCCCCCCCCC
Q psy10547        236 NLTLYKNSFRGLEL-----SLKNLNLKNTKLKSVTPYWR  269 (269)
Q Consensus       236 ~l~l~~n~~~~l~~-----~L~~L~l~~n~l~~~p~~~~  269 (269)
                      .+.++.|++..+|.     .|..||+|+|++..+|-+||
T Consensus       193 ~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr  231 (722)
T KOG0532|consen  193 DLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR  231 (722)
T ss_pred             HHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhh
Confidence            99999999988773     48899999999999998874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=4.8e-12  Score=111.25  Aligned_cols=174  Identities=30%  Similarity=0.406  Sum_probs=142.6

Q ss_pred             CcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN  154 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~  154 (269)
                      ..++.+.+.++.+.+++....... +|+.|++++|++..+. .....++             .|+.|++++|++..+++.
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~-------------~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLP-------------NLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccc-------------cccccccCCchhhhhhhh
Confidence            447889999999999988887764 7899999999988873 3456677             788899999999998663


Q ss_pred             HHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCC
Q psy10547        155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELN  234 (269)
Q Consensus       155 ~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L  234 (269)
                       ..... +++.|++++|++..++.. ......|+.+.+++|.+..++. .+..+.++..+.+.+|++..++..+..++.+
T Consensus       182 -~~~~~-~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l  257 (394)
T COG4886         182 -LSNLS-NLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPESIGNLSNL  257 (394)
T ss_pred             -hhhhh-hhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeeccchhcccccc
Confidence             22556 899999999999999864 3455669999999997655554 5778888999999999998888889999999


Q ss_pred             ceeeeccCcccccc-----cccceeecCCCCCCCCCCC
Q psy10547        235 NNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       235 ~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.+++++|.++.++     .+++.|++++|.+..+++.
T Consensus       258 ~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         258 ETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ceeccccccccccccccccCccCEEeccCccccccchh
Confidence            99999999998875     5899999999998876654

>KOG1259|consensus

Probab=99.16  E-value=4.8e-12  Score=102.99  Aligned_cols=128  Identities=27%  Similarity=0.350  Sum_probs=109.2

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      |+.+|+++|.|+.+.. ...-++             .++.|++++|.|..+..  +..++ +|++||+++|.++.+. ++
T Consensus       286 LtelDLS~N~I~~iDE-SvKL~P-------------kir~L~lS~N~i~~v~n--La~L~-~L~~LDLS~N~Ls~~~-Gw  347 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDE-SVKLAP-------------KLRRLILSQNRIRTVQN--LAELP-QLQLLDLSGNLLAECV-GW  347 (490)
T ss_pred             hhhccccccchhhhhh-hhhhcc-------------ceeEEeccccceeeehh--hhhcc-cceEeecccchhHhhh-hh
Confidence            8889999999998843 455566             78899999999998854  77888 9999999999999886 45


Q ss_pred             hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc--ccccCcCCCceeeeccCcccccc
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK--NSFRGLELNNNLTLYKNSFRGLE  248 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~l~l~~n~~~~l~  248 (269)
                      -..+.++++|.+++|.|..+..  +..+.+|..|++++|+|..+.  ..+++++-|+++.+.+|.+..++
T Consensus       348 h~KLGNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            5678899999999999987763  667788999999999998654  47999999999999999998865

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.15  E-value=2.1e-11  Score=77.75  Aligned_cols=60  Identities=45%  Similarity=0.730  Sum_probs=36.2

Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      +|++|++++|+++.++++.|..+++|++|++++|.++.+++++|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666666655566666666666666666666655666666666666665543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=1.7e-10  Score=73.51  Aligned_cols=60  Identities=33%  Similarity=0.666  Sum_probs=44.4

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI  197 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  197 (269)
                      +|++|++++|.++.+++..|.+++ +|++|++++|+++.++++.|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566777777777777777777777 777777777777777777777777777777777754

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=7.2e-10  Score=97.49  Aligned_cols=168  Identities=32%  Similarity=0.445  Sum_probs=127.0

Q ss_pred             EEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCC-cccccccccccccccccEEEcCCCCCCccChhHHhhc
Q psy10547         81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL  159 (269)
Q Consensus        81 l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  159 (269)
                      +....+.+..-.........++.|++.+|.++.+.+.. ..+ .             +++.|++++|.+..+. ..+..+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~-------------nL~~L~l~~N~i~~l~-~~~~~l  162 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKS-------------NLKELDLSDNKIESLP-SPLRNL  162 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchh-------------hcccccccccchhhhh-hhhhcc
Confidence            55555554332333323334788888888888886532 222 2             5778999999998874 356677


Q ss_pred             cccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeee
Q psy10547        160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL  239 (269)
Q Consensus       160 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l  239 (269)
                      + +|+.|++++|++..+++. ....+.|+.|++++|+++.++. .......|+.+.+++|.+...+..+..+..+..+.+
T Consensus       163 ~-~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         163 P-NLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             c-cccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcceecchhhhhccccccccc
Confidence            7 999999999999999864 3367899999999999999987 334556699999999977777778888999999988


Q ss_pred             ccCccccc------ccccceeecCCCCCCCCCC
Q psy10547        240 YKNSFRGL------ELSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       240 ~~n~~~~l------~~~L~~L~l~~n~l~~~p~  266 (269)
                      ..|++..+      +.+++.|++++|+++.++.
T Consensus       240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         240 SNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             CCceeeeccchhccccccceecccccccccccc
Confidence            88877552      2579999999999999875

>KOG1909|consensus

Probab=98.95  E-value=1.2e-10  Score=96.46  Aligned_cols=202  Identities=19%  Similarity=0.232  Sum_probs=145.9

Q ss_pred             CCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCC-----CCCcccEEEecCCCCcccCcccccCCccccccc--c
Q psy10547         58 LTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF-----NGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--E  130 (269)
Q Consensus        58 ~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~  130 (269)
                      ...+|+....+...+-+...|++++|++|-++.-....|     +...|++|.+.+|.+.......+++  .|..+.  .
T Consensus        74 ~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~~k  151 (382)
T KOG1909|consen   74 KDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAVNK  151 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHHHh
Confidence            446788888888888788889999999998774333222     2334999999999988665544332  011111  0


Q ss_pred             cccccccccEEEcCCCCCCccCh----hHHhhccccccEEEccCCCCCc----cChhhhcCCCCCCEEeccCCCCCCCC-
Q psy10547        131 NTFNGIFIKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLEQ----VPVETLRHLKNLTLIDLSKNKIGKIP-  201 (269)
Q Consensus       131 ~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~i~-  201 (269)
                      -.-+.+.|++++..+|.+..-+.    ..|+..+ .|+.+.+..|.|..    .....|.++++|+.||+++|-++.-. 
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs  230 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS  230 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence            01112279999999999987654    3456666 89999999998863    34467889999999999999986433 


Q ss_pred             ---CCcccCCCCCCEEEcCCCcccc-----cccccc-CcCCCceeeeccCccccc-----------ccccceeecCCCCC
Q psy10547        202 ---DDSFSTLNNLVTLKLSDNNLTL-----YKNSFR-GLELNNNLTLYKNSFRGL-----------ELSLKNLNLKNTKL  261 (269)
Q Consensus       202 ---~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~-~l~~L~~l~l~~n~~~~l-----------~~~L~~L~l~~n~l  261 (269)
                         ...++.|++|+.+++++|.++.     +-.++. ..++|+.+.+.+|.++.-           .+.|..|+|++|++
T Consensus       231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               2467788999999999999972     223333 368899999999988751           14899999999998


Q ss_pred             C
Q psy10547        262 K  262 (269)
Q Consensus       262 ~  262 (269)
                      .
T Consensus       311 ~  311 (382)
T KOG1909|consen  311 G  311 (382)
T ss_pred             c
Confidence            3

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=2.9e-09  Score=98.62  Aligned_cols=83  Identities=27%  Similarity=0.297  Sum_probs=46.4

Q ss_pred             ccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccccCcCCCceeeecc
Q psy10547        163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYK  241 (269)
Q Consensus       163 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~~~l~~L~~l~l~~  241 (269)
                      ++.|+|++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|+++ .+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455555555555554555555556666666665554333334555555666666666555 3555555555666666665


Q ss_pred             Cccc
Q psy10547        242 NSFR  245 (269)
Q Consensus       242 n~~~  245 (269)
                      |.+.
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            5555

>PLN03150 hypothetical protein; Provisional

Probab=98.92  E-value=3.7e-09  Score=97.89  Aligned_cols=84  Identities=27%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             ccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcC
Q psy10547        138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS  217 (269)
Q Consensus       138 L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~  217 (269)
                      ++.|+|++|.+.+..|..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            33444444444444444444444 44444444444443333334444444444444444433222334444444444444


Q ss_pred             CCccc
Q psy10547        218 DNNLT  222 (269)
Q Consensus       218 ~n~l~  222 (269)
                      +|.++
T Consensus       499 ~N~l~  503 (623)
T PLN03150        499 GNSLS  503 (623)
T ss_pred             CCccc
Confidence            44443

>KOG3207|consensus

Probab=98.88  E-value=4.3e-10  Score=95.74  Aligned_cols=188  Identities=20%  Similarity=0.268  Sum_probs=108.1

Q ss_pred             CCCcccEEEecCCCccccCcC--CCCCCcccEEEecCCCCcccCcc--cccCCccccccc--ccccccc----------c
Q psy10547         74 TKVPLDLLYINNSAIRNINEN--TFNGIFIKNLQLSHCRINSITPN--AFRHLDAIRNIN--ENTFNGI----------F  137 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~--~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~l~--~~~~~~~----------~  137 (269)
                      +...|+...+.+..+...+.+  .-....++.|+++.|-+..+.+-  ....+++|+.|+  .|.+...          .
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            334466777777777766643  11223378888888876654332  235566555443  2222211          5


Q ss_pred             ccEEEcCCCCCCccChh-HHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEE
Q psy10547        138 IKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLK  215 (269)
Q Consensus       138 L~~L~l~~n~i~~~~~~-~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~  215 (269)
                      ++.|.++.+.++.-.-. ....++ +++.|++..|....+.......++.|+.|||++|.+...+. .....++.|+.|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            66777777766632211 122344 77777777775333333334556677777777777655542 1345667777777


Q ss_pred             cCCCccccc--ccc-----ccCcCCCceeeeccCcccccc--------cccceeecCCCCCC
Q psy10547        216 LSDNNLTLY--KNS-----FRGLELNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLK  262 (269)
Q Consensus       216 L~~n~l~~~--p~~-----~~~l~~L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~  262 (269)
                      ++.+.++++  |+.     ...+.+|+.|++..|++.+.+        .+++.|.+..|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            777777743  332     234567777777777764422        35566666666654

>KOG0531|consensus

Probab=98.76  E-value=7.9e-10  Score=97.77  Aligned_cols=128  Identities=29%  Similarity=0.355  Sum_probs=83.6

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..++.++++.|.+..+....-....++.|++.+|+|.++... +..++             +|++|++++|.|+.+.+  
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~-------------~L~~L~ls~N~I~~i~~--  135 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLV-------------NLQVLDLSFNKITKLEG--  135 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhh-------------cchheeccccccccccc--
Confidence            334556666666666433333334477778888877776542 44555             67777777777777743  


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCcccc
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      +..+. .|+.|++++|.++.+..  +..+..|+.+++++|.+..+.. . ...+.+++.+.+..|.+..
T Consensus       136 l~~l~-~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  136 LSTLT-LLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhhcc-chhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            45566 67777777777777753  5557777777777777777765 1 3566677777777776653

>KOG0531|consensus

Probab=98.74  E-value=1.7e-09  Score=95.73  Aligned_cols=132  Identities=29%  Similarity=0.412  Sum_probs=88.4

Q ss_pred             hccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCC
Q psy10547         70 KHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN  149 (269)
Q Consensus        70 ~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~  149 (269)
                      ..+.....++.+++.+|.|..+....-...+|++|++++|.|+.+.+  +..++             .|+.|++++|.|+
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~-------------~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLT-------------LLKELNLSGNLIS  153 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhcc-------------chhhheeccCcch
Confidence            34667788899999999999887754445558999999999998764  44555             5667777888777


Q ss_pred             ccChhHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      .+.  .+..+. +++.+++++|.+..+.. . ...+..++.+++.+|.+..+..  +..+..+..+++..|.++
T Consensus       154 ~~~--~~~~l~-~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  154 DIS--GLESLK-SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             hcc--CCccch-hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccce
Confidence            763  344466 77777788777777764 2 3556677777777777665542  223333333344444444

>KOG1859|consensus

Probab=98.69  E-value=1.3e-09  Score=98.33  Aligned_cols=121  Identities=28%  Similarity=0.322  Sum_probs=100.1

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .|.+.+.++|.+.... .++.-++ .++.|+|++|+++.+.  .++.++.|++||++.|.++.+|.-..... +|..|.+
T Consensus       165 ~L~~a~fsyN~L~~mD-~SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD-ESLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHHhHH-HHHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence            6888899999988764 4676677 8999999999999986  58999999999999999999986333333 5999999


Q ss_pred             CCCccccccccccCcCCCceeeeccCcccccc--------cccceeecCCCCCCC
Q psy10547        217 SDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       217 ~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~  263 (269)
                      .+|.++.+- .+.++.+|+.||+++|-+.+-.        ..|+.|+|.+|++--
T Consensus       240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999998765 5778999999999999766521        478999999998754

>KOG3207|consensus

Probab=98.68  E-value=8.8e-09  Score=87.92  Aligned_cols=156  Identities=22%  Similarity=0.303  Sum_probs=106.4

Q ss_pred             cccEEEecCCCccccCcCCCCCC-c-ccEEEecCCCCcccC-cccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         77 PLDLLYINNSAIRNINENTFNGI-F-IKNLQLSHCRINSIT-PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~-~-L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      +|+.|+++.|.+.....+..... . +++|.++.|.++.-. ......++             ++..|++.+|....+..
T Consensus       173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP-------------sl~~L~L~~N~~~~~~~  239 (505)
T KOG3207|consen  173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP-------------SLEVLYLEANEIILIKA  239 (505)
T ss_pred             cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC-------------cHHHhhhhcccccceec
Confidence            35667777776655444443332 2 677777777666321 11233445             78889999996444444


Q ss_pred             hHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCCcc------cCCCCCCEEEcCCCccccccc
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDDSF------STLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~~~------~~l~~L~~L~L~~n~l~~~p~  226 (269)
                      ....-+. .|++|+|++|++...+. .....++.|+.|+++.+.+.++..-..      ...++|+.|++..|++..++.
T Consensus       240 ~~~~i~~-~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  240 TSTKILQ-TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             chhhhhh-HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence            4445555 89999999999887763 235678999999999999976642222      356899999999999987653


Q ss_pred             --cccCcCCCceeeeccCcccc
Q psy10547        227 --SFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       227 --~~~~l~~L~~l~l~~n~~~~  246 (269)
                        .+..+.+|+++.+..|.+..
T Consensus       319 l~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  319 LNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhccchhhhhhcccccccc
Confidence              56677788888877776653

>KOG1909|consensus

Probab=98.67  E-value=8.8e-09  Score=85.57  Aligned_cols=191  Identities=17%  Similarity=0.199  Sum_probs=131.1

Q ss_pred             hhhhhhhccCCCCcccEEEecCCCccccCcCC----------CCCC-cccEEEecCCCCcccCcccccCCcccccccccc
Q psy10547         64 FKATLNKHVNTKVPLDLLYINNSAIRNINENT----------FNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENT  132 (269)
Q Consensus        64 ~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~----------~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~  132 (269)
                      ....+.+.+....+|+..++++-..+.+-..+          +.+. .|++|+||.|-+..-.+..|..+-+=.+     
T Consensus        46 Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~-----  120 (382)
T KOG1909|consen   46 AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCT-----  120 (382)
T ss_pred             HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhcc-----
Confidence            34444445555556677777665433222111          1112 4888888888877655554443321111     


Q ss_pred             cccccccEEEcCCCCCCccChhHHhh------------ccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCC
Q psy10547        133 FNGIFIKNLQLSHCRINSITPNAFRH------------LEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNK  196 (269)
Q Consensus       133 ~~~~~L~~L~l~~n~i~~~~~~~~~~------------l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~  196 (269)
                          .|++|.|.+|.+.......+++            -++.|+.+...+|++..-.    ...|+..+.|+.+.++.|.
T Consensus       121 ----~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  121 ----DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             ----CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence                7889999999887655444322            1247999999999987544    3467778999999999998


Q ss_pred             CCCCC----CCcccCCCCCCEEEcCCCccc-----cccccccCcCCCceeeeccCcccc------------cccccceee
Q psy10547        197 IGKIP----DDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELNNNLTLYKNSFRG------------LELSLKNLN  255 (269)
Q Consensus       197 i~~i~----~~~~~~l~~L~~L~L~~n~l~-----~~p~~~~~l~~L~~l~l~~n~~~~------------l~~~L~~L~  255 (269)
                      |..-.    ...+.++++|+.|+|++|.++     .+...++.++.|+.++++++.+..            ..+.|++|.
T Consensus       197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~  276 (382)
T KOG1909|consen  197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE  276 (382)
T ss_pred             ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence            85322    235778899999999999997     356788899999999999987764            114899999


Q ss_pred             cCCCCCCC
Q psy10547        256 LKNTKLKS  263 (269)
Q Consensus       256 l~~n~l~~  263 (269)
                      +.+|.|+.
T Consensus       277 l~gNeIt~  284 (382)
T KOG1909|consen  277 LAGNEITR  284 (382)
T ss_pred             cCcchhHH
Confidence            99998864

>KOG1644|consensus

Probab=98.48  E-value=2.4e-07  Score=71.69  Aligned_cols=122  Identities=24%  Similarity=0.320  Sum_probs=75.7

Q ss_pred             cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL  181 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~  181 (269)
                      +.+++.+.++..+..     +.....         +...+||++|.+..+  +.|..+. .|++|.+++|+|+.+.+..-
T Consensus        22 ~e~~LR~lkip~ien-----lg~~~d---------~~d~iDLtdNdl~~l--~~lp~l~-rL~tLll~nNrIt~I~p~L~   84 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-----LGATLD---------QFDAIDLTDNDLRKL--DNLPHLP-RLHTLLLNNNRITRIDPDLD   84 (233)
T ss_pred             cccccccccccchhh-----cccccc---------ccceecccccchhhc--ccCCCcc-ccceEEecCCcceeeccchh
Confidence            666777766665533     221111         566777777777665  3456666 77777777777777776655


Q ss_pred             cCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccccccc----cccCcCCCceeeec
Q psy10547        182 RHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLTLY  240 (269)
Q Consensus       182 ~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~l~  240 (269)
                      .-+++|..|.+.+|.|..+.+ .-+..+++|+.|.+-+|.++.-..    -+..+++|+.||..
T Consensus        85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   85 TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            556677777777777755432 124556677777777777764432    24455666666544

>KOG4579|consensus

Probab=98.42  E-value=2e-08  Score=72.96  Aligned_cols=85  Identities=20%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             ccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547        163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN  242 (269)
Q Consensus       163 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n  242 (269)
                      |...++++|.+..+++.--...+.+++|++++|.|..+|.+ +..++.|+.|+++.|.+...|.-+..+.++..|+...|
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            33445555555555543222333455555555555555543 55555555555555555554544444555555555555


Q ss_pred             cccccc
Q psy10547        243 SFRGLE  248 (269)
Q Consensus       243 ~~~~l~  248 (269)
                      +...++
T Consensus       134 a~~eid  139 (177)
T KOG4579|consen  134 ARAEID  139 (177)
T ss_pred             ccccCc
Confidence            544443

>KOG1859|consensus

Probab=98.40  E-value=5.1e-09  Score=94.54  Aligned_cols=104  Identities=30%  Similarity=0.368  Sum_probs=85.2

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .++.|+|++|+++.+.  .+..++ .|++|||++|.+..++.-....+. |..|.+.+|.++.+..  +.++.+|+.||+
T Consensus       188 ale~LnLshNk~~~v~--~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g--ie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD--NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG--IENLKSLYGLDL  261 (1096)
T ss_pred             HhhhhccchhhhhhhH--HHHhcc-cccccccccchhccccccchhhhh-heeeeecccHHHhhhh--HHhhhhhhccch
Confidence            6888999999999874  788888 999999999999988753333434 8999999999988874  788999999999


Q ss_pred             CCCccccccc--cccCcCCCceeeeccCcccc
Q psy10547        217 SDNNLTLYKN--SFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       217 ~~n~l~~~p~--~~~~l~~L~~l~l~~n~~~~  246 (269)
                      ++|-+.+..+  -+..+..|+.|++.+|.+.-
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9998876543  46677888999999997754

>KOG4579|consensus

Probab=98.37  E-value=4.6e-08  Score=71.15  Aligned_cols=104  Identities=21%  Similarity=0.244  Sum_probs=85.5

Q ss_pred             cccEEEccCCCCCccChh--hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeee
Q psy10547        162 TLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL  239 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l  239 (269)
                      .+..++|+++.+-.+...  .+.....|+..++++|.+.+.|+..-...+.++++++++|.|+.+|..+-.++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            577888888887766542  234556788899999999999986545556899999999999999999999999999999


Q ss_pred             ccCcccccc------cccceeecCCCCCCCCC
Q psy10547        240 YKNSFRGLE------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       240 ~~n~~~~l~------~~L~~L~l~~n~l~~~p  265 (269)
                      +.|.|.-.|      .++-.||..+|.+..+|
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            999988755      35667888899888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.34  E-value=1.5e-06  Score=63.76  Aligned_cols=109  Identities=26%  Similarity=0.451  Sum_probs=43.0

Q ss_pred             cCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEcc
Q psy10547         91 INENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ  169 (269)
Q Consensus        91 l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~  169 (269)
                      |+..+|... .|+.+.+.. .+..+...+|.++.             +++.+.+..+ +..+...+|.... +++.+.+.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-------------~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~   66 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCT-------------SLKSINFPNN-LTSIGDNAFSNCK-SLESITFP   66 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-T-------------T-SEEEESST-TSCE-TTTTTT-T-T-EEEEET
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccc-------------cccccccccc-ccccceeeeeccc-cccccccc
Confidence            344445444 255555542 34455555555554             4444555443 4444444555544 45555554


Q ss_pred             CCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCC
Q psy10547        170 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD  218 (269)
Q Consensus       170 ~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~  218 (269)
                      + .+..+....|..+++++.+++..+ +..++...|.+. +|+.+.+..
T Consensus        67 ~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   67 N-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             S-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             c-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            3 444444444555555555555443 444444445444 455555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=6.8e-07  Score=52.48  Aligned_cols=37  Identities=46%  Similarity=0.636  Sum_probs=16.5

Q ss_pred             CCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547        186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       186 ~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      +|++|++++|+|+.+++ .++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            34444555554444443 24444444555544444443

...

>KOG1644|consensus

Probab=98.32  E-value=8.8e-07  Score=68.62  Aligned_cols=124  Identities=21%  Similarity=0.268  Sum_probs=85.1

Q ss_pred             ccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      -+.+++++..+..+.. ..... ....+|+++|.+..+.  .|..++             .|.+|.+++|.|+.+.|..-
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~--~lp~l~-------------rL~tLll~nNrIt~I~p~L~   84 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD--NLPHLP-------------RLHTLLLNNNRITRIDPDLD   84 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhcc--cCCCcc-------------ccceEEecCCcceeeccchh
Confidence            3567777776665554 11122 2677888888887653  355666             78888888888888888655


Q ss_pred             hhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEEcCC
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSD  218 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~L~~  218 (269)
                      .-++ +++.|.+.+|.+..+.. ..+..++.|++|.+-+|.+++-..   -.+..+++|+.||.+.
T Consensus        85 ~~~p-~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   85 TFLP-NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhcc-ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            5555 78888888888876432 235677888888888888765432   2345678888888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.25  E-value=4.5e-06  Score=61.22  Aligned_cols=120  Identities=24%  Similarity=0.447  Sum_probs=75.7

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCcc
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI  151 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~  151 (269)
                      .+...++.+.+.. .+..++...|... .++.+.+.++ +..+...+|.+++             +++.+.+.. .+..+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-------------~l~~i~~~~-~~~~i   72 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-------------SLESITFPN-NLKSI   72 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-------------T-EEEEETS-TT-EE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-------------ccccccccc-ccccc
Confidence            3445688899885 6889999999998 5999999885 8899889999998             688888876 77777


Q ss_pred             ChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCC
Q psy10547        152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV  212 (269)
Q Consensus       152 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~  212 (269)
                      ....|.... +++.+++..+ +..+....|... .++.+.+.+ .+..++..+|.+.++|+
T Consensus        73 ~~~~F~~~~-~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   73 GDNAFSNCT-NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -TTTTTT-T-TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccc-cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            778888888 9999999875 788888889887 999999876 67888888898887764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1.1e-06  Score=51.61  Aligned_cols=38  Identities=37%  Similarity=0.633  Sum_probs=17.1

Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI  200 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i  200 (269)
                      +|++|++++|+++.+++ .+..+++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            34455555555554443 244455555555555544433

...

>KOG4658|consensus

Probab=98.21  E-value=1.9e-06  Score=82.31  Aligned_cols=126  Identities=23%  Similarity=0.307  Sum_probs=77.0

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCC--CcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCR--INSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      +...+-++.+..++...-.. .+++|-+..|.  +..+....|..++             .|++||+++|.--.-.|..+
T Consensus       526 rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~-------------~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLP-------------LLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             eEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCc-------------ceEEEECCCCCccCcCChHH
Confidence            44455555555444433222 46677777765  5555555666677             66677777664444446667


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCc
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN  220 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~  220 (269)
                      +.+. +|++|+++++.+..+|.+ ++.+..|.+|++..+......++....+++|++|.+..-.
T Consensus       592 ~~Li-~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  592 GELV-HLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhh-hhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777 777777777777766643 6777777777777665433334555557777777765443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=4.8e-07  Score=73.24  Aligned_cols=199  Identities=18%  Similarity=0.164  Sum_probs=131.7

Q ss_pred             CCchhhhhhhhccCCCCcccEEEecCCCccccCcCC----CCC-CcccEEEecCCCCcccCccccc----CCcccccccc
Q psy10547         60 NYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENT----FNG-IFIKNLQLSHCRINSITPNAFR----HLDAIRNINE  130 (269)
Q Consensus        60 ~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~l~~  130 (269)
                      .+++-...+.+.+-+...++++++++|.++.--+..    .+. ..|.+|.+++|.+..+....++    .+...+    
T Consensus        76 e~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK----  151 (388)
T COG5238          76 ELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK----  151 (388)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh----
Confidence            456666666777778888999999999877433222    222 2399999999998876554332    222111    


Q ss_pred             cccccccccEEEcCCCCCCccChhH----HhhccccccEEEccCCCCCcc-----ChhhhcCCCCCCEEeccCCCCCCCC
Q psy10547        131 NTFNGIFIKNLQLSHCRINSITPNA----FRHLEFTLKHLNLQENDLEQV-----PVETLRHLKNLTLIDLSKNKIGKIP  201 (269)
Q Consensus       131 ~~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~i~~i~  201 (269)
                      .+-..+.|++++...|++..-+...    |..-. +|+++.+..|.|..-     ....+..+.+|+.||+++|-++...
T Consensus       152 Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~-~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g  230 (388)
T COG5238         152 KAADKPKLEVVICGRNRLENGSKELSAALLESHE-NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG  230 (388)
T ss_pred             hhccCCCceEEEeccchhccCcHHHHHHHHHhhc-CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence            1112226889999999987654432    22233 799999999987632     2223455789999999999887543


Q ss_pred             C----CcccCCCCCCEEEcCCCccc--cccc---ccc--CcCCCceeeeccCcccc---------------cccccceee
Q psy10547        202 D----DSFSTLNNLVTLKLSDNNLT--LYKN---SFR--GLELNNNLTLYKNSFRG---------------LELSLKNLN  255 (269)
Q Consensus       202 ~----~~~~~l~~L~~L~L~~n~l~--~~p~---~~~--~l~~L~~l~l~~n~~~~---------------l~~~L~~L~  255 (269)
                      .    .++..|+.|+.|.+.+|.++  +...   .+.  ..++|..|-..+|.+.+               +| -|..|.
T Consensus       231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p-~L~~le  309 (388)
T COG5238         231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVP-LLVDLE  309 (388)
T ss_pred             HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccH-HHHHHH
Confidence            3    45678888999999999886  2222   222  23566667666665543               33 677888


Q ss_pred             cCCCCCCCC
Q psy10547        256 LKNTKLKSV  264 (269)
Q Consensus       256 l~~n~l~~~  264 (269)
                      +.+|+|++.
T Consensus       310 ~ngNr~~E~  318 (388)
T COG5238         310 RNGNRIKEL  318 (388)
T ss_pred             HccCcchhH
Confidence            888888764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.09  E-value=1.6e-05  Score=69.13  Aligned_cols=124  Identities=19%  Similarity=0.322  Sum_probs=70.8

Q ss_pred             cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC-CCCccChhHHhhccccccEEEccCC-CCCccC
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQEN-DLEQVP  177 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~~L~~L~l~~n-~l~~~~  177 (269)
                      .++.|++++|.++.++     .++.            +|+.|.++++ .++.+ |+.+   +.+|++|++++| .+..+|
T Consensus        53 ~l~~L~Is~c~L~sLP-----~LP~------------sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         53 ASGRLYIKDCDIESLP-----VLPN------------ELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCCEEEeCCCCCcccC-----CCCC------------CCcEEEccCCCCcccC-Cchh---hhhhhheEccCcccccccc
Confidence            4888999988777663     3332            6888888764 44333 4333   237899999988 555554


Q ss_pred             hhhhcCCCCCCEEeccCCCCCCCCCCcccCC-CCCCEEEcCCCc-cc--cccccccCc-CCCceeeeccCccc----ccc
Q psy10547        178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTL-NNLVTLKLSDNN-LT--LYKNSFRGL-ELNNNLTLYKNSFR----GLE  248 (269)
Q Consensus       178 ~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l-~~L~~L~L~~n~-l~--~~p~~~~~l-~~L~~l~l~~n~~~----~l~  248 (269)
                             ++|+.|+++.+....+.     .+ ++|+.|.+.+++ ..  .+|.   .+ ++|+.|++.+|...    ++|
T Consensus       112 -------~sLe~L~L~~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP  176 (426)
T PRK15386        112 -------ESVRSLEIKGSATDSIK-----NVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP  176 (426)
T ss_pred             -------cccceEEeCCCCCcccc-----cCcchHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc
Confidence                   35777777766543221     11 235555553322 11  1111   11 45667777666543    255


Q ss_pred             cccceeecCCC
Q psy10547        249 LSLKNLNLKNT  259 (269)
Q Consensus       249 ~~L~~L~l~~n  259 (269)
                      .+|+.|+++.+
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            66777777665

>KOG3665|consensus

Probab=98.04  E-value=4.2e-06  Score=78.11  Aligned_cols=124  Identities=18%  Similarity=0.281  Sum_probs=92.1

Q ss_pred             cccEEEcCCCCC-CccChhHHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEE
Q psy10547        137 FIKNLQLSHCRI-NSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL  214 (269)
Q Consensus       137 ~L~~L~l~~n~i-~~~~~~~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L  214 (269)
                      +|++|++++... ..-.+..++.+-|+|+.|.+++-.+..-. .....++++|..||+|++.++.+.  .++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHHHH
Confidence            799999988743 33344555554459999999986654321 233467899999999999998883  58899999999


Q ss_pred             EcCCCcccccc--ccccCcCCCceeeeccCcccc--------------cccccceeecCCCCCCC
Q psy10547        215 KLSDNNLTLYK--NSFRGLELNNNLTLYKNSFRG--------------LELSLKNLNLKNTKLKS  263 (269)
Q Consensus       215 ~L~~n~l~~~p--~~~~~l~~L~~l~l~~n~~~~--------------l~~~L~~L~l~~n~l~~  263 (269)
                      .+.+=.+....  ..+.++++|+.||++......              +| +|+.||.|++.+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhH
Confidence            98876776433  367889999999999875443              44 99999999887653

>KOG4658|consensus

Probab=97.98  E-value=6.3e-06  Score=78.90  Aligned_cols=105  Identities=23%  Similarity=0.328  Sum_probs=88.7

Q ss_pred             cccEEEecCCC--ccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         77 PLDLLYINNSA--IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        77 ~l~~l~l~~~~--i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      .+++|-+..|.  +..++.+.|..+. |+.||+++|.-.+..|...+.+-             +|++|+++++.+..+ |
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-------------~LryL~L~~t~I~~L-P  611 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-------------HLRYLDLSDTGISHL-P  611 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-------------hhhcccccCCCcccc-c
Confidence            57888888886  8899999999887 99999999876566687888888             888899999999976 5


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK  196 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  196 (269)
                      ..++++. +|.+|++..+......++....+++|++|.+....
T Consensus       612 ~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  612 SGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hHHHHHH-hhheeccccccccccccchhhhcccccEEEeeccc
Confidence            6899999 99999999988666667777779999999987654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=7.9e-05  Score=64.88  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=20.5

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCC
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR  110 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~  110 (269)
                      ..++.|++++|.+..+|. .  ..+|+.|.++++.
T Consensus        52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~   83 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCN   83 (426)
T ss_pred             cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCC
Confidence            446778888887777771 1  1237788877653

>KOG2123|consensus

Probab=97.70  E-value=2.1e-06  Score=69.79  Aligned_cols=81  Identities=25%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEE
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~  215 (269)
                      ++++|+..++.+.++  .....++ .|+.|.|+-|+|+.+.+  +..+++|+.|.|..|.|.++.+ ..+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp-~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMP-LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcc-cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            455666666666665  2344555 66666666666666643  5666666666666666655542 2344556666666


Q ss_pred             cCCCccc
Q psy10547        216 LSDNNLT  222 (269)
Q Consensus       216 L~~n~l~  222 (269)
                      |..|.-.
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            6666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.63  E-value=3.7e-05  Score=62.58  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=94.2

Q ss_pred             cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh-------------hccccccEE
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-------------HLEFTLKHL  166 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-------------~l~~~L~~L  166 (269)
                      .+++.++|.|.+....|..+..+-+-..         .+.+|.+++|.+..+...-++             .- +.|+..
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t---------~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~v  162 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSST---------DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVV  162 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCC---------CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEE
Confidence            3666677777666554443332221111         678888888877665443332             12 368888


Q ss_pred             EccCCCCCccCh----hhhcCCCCCCEEeccCCCCCCCC--C---CcccCCCCCCEEEcCCCccc-----cccccccCcC
Q psy10547        167 NLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIGKIP--D---DSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLE  232 (269)
Q Consensus       167 ~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~i~~i~--~---~~~~~l~~L~~L~L~~n~l~-----~~p~~~~~l~  232 (269)
                      ...+|++..-+.    ..+..-..|+.+.+..|.|..-.  .   --+..+.+|+.|++++|-++     .+..++..++
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            888888765442    23334467888888888775321  1   01235678889999988887     2345677778


Q ss_pred             CCceeeeccCcccc--------------cccccceeecCCCCCC
Q psy10547        233 LNNNLTLYKNSFRG--------------LELSLKNLNLKNTKLK  262 (269)
Q Consensus       233 ~L~~l~l~~n~~~~--------------l~~~L~~L~l~~n~l~  262 (269)
                      .|+.|.+..|-++.              . ++|..|-..+|.+.
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~-p~l~~L~~~Yne~~  285 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFV-PNLMPLPGDYNERR  285 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcC-CCccccccchhhhc
Confidence            88888888775543              2 37777777777544

>KOG2982|consensus

Probab=97.35  E-value=2.9e-05  Score=63.90  Aligned_cols=170  Identities=21%  Similarity=0.278  Sum_probs=90.5

Q ss_pred             cEEEecCCCccccCcCC-CC-CCc-ccEEEecCCCCcccCc--ccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         79 DLLYINNSAIRNINENT-FN-GIF-IKNLQLSHCRINSITP--NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~-~~-~~~-L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ..+-+.++.|....... |. ... ++.+|+.+|.|+....  ..+.+++             .+++|+++.|++.....
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP-------------~l~~LNls~N~L~s~I~  114 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLP-------------ALTTLNLSCNSLSSDIK  114 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCc-------------cceEeeccCCcCCCccc
Confidence            34555555555443221 11 112 7778888887775432  2356677             67777777777654332


Q ss_pred             hHHhhccccccEEEccCCCCC-ccChhhhcCCCCCCEEeccCCCCCC--CCCCcccCCC-CCCEEEcCC-----------
Q psy10547        154 NAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLN-NLVTLKLSD-----------  218 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~--i~~~~~~~l~-~L~~L~L~~-----------  218 (269)
                      ..-.... +|+.|-+.+..+. ......+..++.++.|.++.|.++.  +.++....+. .+++|++..           
T Consensus       115 ~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~  193 (418)
T KOG2982|consen  115 SLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK  193 (418)
T ss_pred             cCccccc-ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence            1112334 6777777776654 2223345666777777777775432  2222222222 334444333           


Q ss_pred             ---------------Cccccc--cccccCcCCCceeeeccCcccc---------cccccceeecCCCCCCC
Q psy10547        219 ---------------NNLTLY--KNSFRGLELNNNLTLYKNSFRG---------LELSLKNLNLKNTKLKS  263 (269)
Q Consensus       219 ---------------n~l~~~--p~~~~~l~~L~~l~l~~n~~~~---------l~~~L~~L~l~~n~l~~  263 (269)
                                     |.+...  .+....++++..|+++.|++.+         . +.|+.|.+++|++.+
T Consensus       194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSD  263 (418)
T ss_pred             HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccc
Confidence                           333211  1223334555566777766654         3 478888888888765

>KOG2120|consensus

Probab=97.31  E-value=4.7e-05  Score=62.72  Aligned_cols=202  Identities=19%  Similarity=0.167  Sum_probs=100.8

Q ss_pred             CceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCcccc-CcCCCCCCc--ccEEEecCCCCcccC-cccccCCcc
Q psy10547         49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNI-NENTFNGIF--IKNLQLSHCRINSIT-PNAFRHLDA  124 (269)
Q Consensus        49 ~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l-~~~~~~~~~--L~~L~l~~n~l~~~~-~~~~~~l~~  124 (269)
                      .|..++-.+..-.|...+.+...-     ..++.+....+.+- -.+.|....  ++++|++...|+.-. -.-+..+.+
T Consensus       137 lW~~lDl~~r~i~p~~l~~l~~rg-----V~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  137 LWQTLDLTGRNIHPDVLGRLLSRG-----VIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             ceeeeccCCCccChhHHHHHHhCC-----eEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence            344444443333344444443321     24455554333322 123334333  888888888777421 222444554


Q ss_pred             cccccccccc-----------cccccEEEcCCC-CCCccCh-hHHhhccccccEEEccCCCCCccChhh-h-cCCCCCCE
Q psy10547        125 IRNINENTFN-----------GIFIKNLQLSHC-RINSITP-NAFRHLEFTLKHLNLQENDLEQVPVET-L-RHLKNLTL  189 (269)
Q Consensus       125 L~~l~~~~~~-----------~~~L~~L~l~~n-~i~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~~  189 (269)
                      |+.|+.....           ...|..++++.+ .++.... -.+..+. .|.+|+++.+.+..-...+ . .--++|+.
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS-RLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh-hHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            4443321111           115667777665 4443322 2244555 6777777777655311111 1 11245666


Q ss_pred             EeccCCCC----CCCCCCcccCCCCCCEEEcCCCc-cc-cccccccCcCCCceeeeccC---------ccccccccccee
Q psy10547        190 IDLSKNKI----GKIPDDSFSTLNNLVTLKLSDNN-LT-LYKNSFRGLELNNNLTLYKN---------SFRGLELSLKNL  254 (269)
Q Consensus       190 L~l~~n~i----~~i~~~~~~~l~~L~~L~L~~n~-l~-~~p~~~~~l~~L~~l~l~~n---------~~~~l~~~L~~L  254 (269)
                      |+++|+.-    .++. .-....++|.+|||++|. ++ ..-..+..++.|+++.++.+         .+.+.| .+.+|
T Consensus       291 LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p-sl~yL  368 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP-SLVYL  368 (419)
T ss_pred             hhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCc-ceEEE
Confidence            66666531    1111 112345777888887763 44 34456777777888877765         223344 66777


Q ss_pred             ecCC
Q psy10547        255 NLKN  258 (269)
Q Consensus       255 ~l~~  258 (269)
                      |.-+
T Consensus       369 dv~g  372 (419)
T KOG2120|consen  369 DVFG  372 (419)
T ss_pred             Eecc
Confidence            6654

>KOG2982|consensus

Probab=97.28  E-value=7.6e-05  Score=61.51  Aligned_cols=151  Identities=22%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             ccEEEecCCCCcccCcc-cccCCcccccccccccccccccEEEcCCCCCCccCh--hHHhhccccccEEEccCCCCCccC
Q psy10547        101 IKNLQLSHCRINSITPN-AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP--NAFRHLEFTLKHLNLQENDLEQVP  177 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~--~~~~~l~~~L~~L~l~~n~l~~~~  177 (269)
                      ++-|.+.++.|..+... .|+...+            .++.+||.+|.|++...  ..+.+++ .++.|+++.|.+....
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~------------~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I  113 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVT------------DVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDI  113 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhh------------hhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCcc
Confidence            45666667766655432 1222111            67788999998876432  2345566 8999999999887655


Q ss_pred             hhhhcCCCCCCEEeccCCCCC-CCCCCcccCCCCCCEEEcCCCccccc---cccccCcC-CCceeeec---------cCc
Q psy10547        178 VETLRHLKNLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTLY---KNSFRGLE-LNNNLTLY---------KNS  243 (269)
Q Consensus       178 ~~~~~~l~~L~~L~l~~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~---p~~~~~l~-~L~~l~l~---------~n~  243 (269)
                      .+.-....+|+.|-+.+..+. .-....+..+++++.|+++.|.+..+   .+.+...+ .+.++...         -|+
T Consensus       114 ~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~  193 (418)
T KOG2982|consen  114 KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK  193 (418)
T ss_pred             ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence            332235678888888887762 22223566778888888888855422   11222222 23333333         334


Q ss_pred             ccccccccceeecCCCCCCCC
Q psy10547        244 FRGLELSLKNLNLKNTKLKSV  264 (269)
Q Consensus       244 ~~~l~~~L~~L~l~~n~l~~~  264 (269)
                      +..+-+++..+-+-.|+++..
T Consensus       194 l~r~Fpnv~sv~v~e~PlK~~  214 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPLKTE  214 (418)
T ss_pred             HHhhcccchheeeecCcccch
Confidence            444334777777777776654

>KOG3665|consensus

Probab=97.20  E-value=0.00025  Score=66.46  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             ccEEEecCCCCcccC-c-ccccCCcccccccccccccccccEEEcCCCCCCccC-hhHHhhccccccEEEccCCCCCccC
Q psy10547        101 IKNLQLSHCRINSIT-P-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQENDLEQVP  177 (269)
Q Consensus       101 L~~L~l~~n~l~~~~-~-~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~~L~~L~l~~n~l~~~~  177 (269)
                      |++|+++|...-... + ..-..+|             +|+.|.+.+-.+..-. ...+.+++ +|..||+++++++.+ 
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LP-------------sL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-  188 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLP-------------SLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL-  188 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCc-------------ccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc-
Confidence            888888886533211 2 2234466             6777888776664432 23445566 888888888888877 


Q ss_pred             hhhhcCCCCCCEEeccCCCCCC-CCCCcccCCCCCCEEEcCCCcccccc-------ccccCcCCCceeeeccCcccc
Q psy10547        178 VETLRHLKNLTLIDLSKNKIGK-IPDDSFSTLNNLVTLKLSDNNLTLYK-------NSFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       178 ~~~~~~l~~L~~L~l~~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~p-------~~~~~l~~L~~l~l~~n~~~~  246 (269)
                       ..++.+++|+.|.+.+=.+.. -.-..+.++++|+.||++.......+       +.-..++.|+.||.++..+..
T Consensus       189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence             447778888888776644432 11113457788888888865443221       233447788888888776654

>KOG2123|consensus

Probab=97.15  E-value=2.4e-05  Score=63.77  Aligned_cols=79  Identities=28%  Similarity=0.453  Sum_probs=44.6

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh-h
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-E  179 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~  179 (269)
                      +++|++.|+.+..|.  ....|+             .|++|.|+-|.|+.+.|  |.... +|++|.|..|.|..+.. .
T Consensus        21 vkKLNcwg~~L~DIs--ic~kMp-------------~lEVLsLSvNkIssL~p--l~rCt-rLkElYLRkN~I~sldEL~   82 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDIS--ICEKMP-------------LLEVLSLSVNKISSLAP--LQRCT-RLKELYLRKNCIESLDELE   82 (388)
T ss_pred             hhhhcccCCCccHHH--HHHhcc-------------cceeEEeeccccccchh--HHHHH-HHHHHHHHhcccccHHHHH
Confidence            455666666666553  234555             55666666666666543  44555 56666666666665532 2


Q ss_pred             hhcCCCCCCEEeccCCCC
Q psy10547        180 TLRHLKNLTLIDLSKNKI  197 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i  197 (269)
                      -+.++++|+.|.|..|.-
T Consensus        83 YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHhcCchhhhHhhccCCc
Confidence            235566666666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.82  E-value=0.0004  Score=34.06  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=12.3

Q ss_pred             ccceeecCCCCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p~~~  268 (269)
                      +|++||+++|+|+.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            3566677777666666654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120|consensus

Probab=96.59  E-value=8.7e-05  Score=61.21  Aligned_cols=123  Identities=24%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             cccEEEcCCCCCCccChh-HHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC-CCCCCC-CcccCCCCCCE
Q psy10547        137 FIKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPD-DSFSTLNNLVT  213 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~-~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~i~~-~~~~~l~~L~~  213 (269)
                      .++++||++..|+.-.-. .++... +|+.|.+.++.+..-....+....+|+.|+++++. +++-.. -.+.++..|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            477888888877754322 233344 78888888888887666677777888888888753 333221 13456677888


Q ss_pred             EEcCCCcccc--ccccccC-cCCCceeeeccCc--c--cccc------cccceeecCCCC
Q psy10547        214 LKLSDNNLTL--YKNSFRG-LELNNNLTLYKNS--F--RGLE------LSLKNLNLKNTK  260 (269)
Q Consensus       214 L~L~~n~l~~--~p~~~~~-l~~L~~l~l~~n~--~--~~l~------~~L~~L~l~~n~  260 (269)
                      |++++|.+..  +-..+.+ -..|..|++++..  |  .++.      +++.+||||+|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            8888886641  1111222 1346666666531  1  1111      489999999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.44  E-value=0.0017  Score=29.56  Aligned_cols=16  Identities=38%  Similarity=0.700  Sum_probs=7.8

Q ss_pred             ccceeecCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVT  265 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p  265 (269)
                      +|++|++++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666655

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0016  Score=31.81  Aligned_cols=19  Identities=53%  Similarity=0.555  Sum_probs=10.1

Q ss_pred             CCEEEcCCCcccccccccc
Q psy10547        211 LVTLKLSDNNLTLYKNSFR  229 (269)
Q Consensus       211 L~~L~L~~n~l~~~p~~~~  229 (269)
                      |++|++++|+++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739|consensus

Probab=96.28  E-value=0.0036  Score=50.76  Aligned_cols=83  Identities=27%  Similarity=0.408  Sum_probs=47.7

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCC--CCCc-cChhhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCC
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN--DLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLV  212 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n--~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~  212 (269)
                      .++.+.+.+..++..  ..|..++ +|++|.++.|  .+.. +.. ....+++|+++++++|+|..+.. .....+.+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcc-hhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            455566666555544  3355566 7778888777  4332 221 12344777788887777653210 1234556677


Q ss_pred             EEEcCCCcccc
Q psy10547        213 TLKLSDNNLTL  223 (269)
Q Consensus       213 ~L~L~~n~l~~  223 (269)
                      .|++.+|..+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            77777766553

>KOG2739|consensus

Probab=96.07  E-value=0.0045  Score=50.20  Aligned_cols=94  Identities=26%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCC--CCC-CCCCCcccCCCCCCEEEcCCCcccccc--ccccCcCCCce
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN--KIG-KIPDDSFSTLNNLVTLKLSDNNLTLYK--NSFRGLELNNN  236 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~  236 (269)
                      .++.+++.+..++.+.  .|..+++|+.|.++.|  ++. +++. .....++|+++.++.|++..+.  ..+..+.+|..
T Consensus        44 ~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             chhhhhhhccceeecc--cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            5777777777777664  3667889999999999  442 3332 2334589999999999987532  24556677778


Q ss_pred             eeeccCcccccc----------cccceeecCC
Q psy10547        237 LTLYKNSFRGLE----------LSLKNLNLKN  258 (269)
Q Consensus       237 l~l~~n~~~~l~----------~~L~~L~l~~  258 (269)
                      |++..|..+.+.          ++|+.||-..
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            888887665532          3666665443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.25  E-value=0.016  Score=29.46  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=10.9

Q ss_pred             CCCCEEeccCCCCCCCCCCcc
Q psy10547        185 KNLTLIDLSKNKIGKIPDDSF  205 (269)
Q Consensus       185 ~~L~~L~l~~n~i~~i~~~~~  205 (269)
                      ++|++|++++|+++.+|++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.25  E-value=0.016  Score=29.46  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=10.9

Q ss_pred             CCCCEEeccCCCCCCCCCCcc
Q psy10547        185 KNLTLIDLSKNKIGKIPDDSF  205 (269)
Q Consensus       185 ~~L~~L~l~~n~i~~i~~~~~  205 (269)
                      ++|++|++++|+++.+|++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.23  E-value=0.013  Score=26.55  Aligned_cols=13  Identities=62%  Similarity=0.664  Sum_probs=4.3

Q ss_pred             CCEEEcCCCcccc
Q psy10547        211 LVTLKLSDNNLTL  223 (269)
Q Consensus       211 L~~L~L~~n~l~~  223 (269)
                      |+.|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.15  E-value=0.014  Score=30.34  Aligned_cols=26  Identities=23%  Similarity=0.513  Sum_probs=16.8

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhh
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATL   68 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l   68 (269)
                      ||..|.|..     ..|.|. ..++..+|..+
T Consensus         2 CP~~C~C~~-----~~V~C~-~~~L~~vP~~l   27 (28)
T PF01462_consen    2 CPRPCTCSG-----LTVDCS-GRGLTAVPSDL   27 (28)
T ss_dssp             SETTSEEET-----TEEEET-TSS-SSS-STS
T ss_pred             cCCCCEecC-----CEeECC-CCCCCccCCCC
Confidence            567899985     789999 44555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.43  E-value=0.024  Score=28.75  Aligned_cols=18  Identities=39%  Similarity=0.674  Sum_probs=12.2

Q ss_pred             ccceeecCCCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p~~  267 (269)
                      +|+.|+|++|+|+.+|++
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            566677777777776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.43  E-value=0.024  Score=28.75  Aligned_cols=18  Identities=39%  Similarity=0.674  Sum_probs=12.2

Q ss_pred             ccceeecCCCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p~~  267 (269)
                      +|+.|+|++|+|+.+|++
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            566677777777776654

>KOG3864|consensus

Probab=93.99  E-value=0.018  Score=45.14  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=18.2

Q ss_pred             ccCcCCCCCCcccEEEecCCCCcccCcccccCCc
Q psy10547         90 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLD  123 (269)
Q Consensus        90 ~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  123 (269)
                      ..|...+..+.++.++-++..|..++-..+.+++
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~  125 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLR  125 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccc
Confidence            3444434444466666666666665544455555

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=93.70  E-value=0.054  Score=29.31  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhh
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNK   70 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~   70 (269)
                      ||..|.|..     ..|.|. ..++..+|..+|.
T Consensus         2 CP~~C~C~~-----~~V~C~-~~~L~~vP~~iP~   29 (33)
T smart00013        2 CPAPCNCSG-----TAVDCS-GRGLTEVPLDLPP   29 (33)
T ss_pred             cCCCCEECC-----CEeEeC-CCCcCccCCCCCc
Confidence            567899973     679999 5566666666654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.77  E-value=0.076  Score=26.91  Aligned_cols=17  Identities=47%  Similarity=0.657  Sum_probs=11.0

Q ss_pred             ccceeecCCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p~  266 (269)
                      +|+.|+.++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56666666666666664

>KOG0473|consensus

Probab=92.75  E-value=0.002  Score=51.52  Aligned_cols=90  Identities=21%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL  233 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~  233 (269)
                      -.+.... ..+.||++.|++..+-. .|+.++.+..++++.|++..+|. .+..+..+..+++..|..+..|.+++..+.
T Consensus        36 ~ei~~~k-r~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFK-RVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPKSQKKEPH  112 (326)
T ss_pred             hhhhccc-eeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCccccccCC
Confidence            3344445 67888888888776653 36667778888888888888876 466777778888888888888888888888


Q ss_pred             CceeeeccCcccc
Q psy10547        234 NNNLTLYKNSFRG  246 (269)
Q Consensus       234 L~~l~l~~n~~~~  246 (269)
                      ++.++...+.|..
T Consensus       113 ~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  113 PKKNEQKKTEFFR  125 (326)
T ss_pred             cchhhhccCcchH
Confidence            8888887777653

>KOG0473|consensus

Probab=92.40  E-value=0.002  Score=51.56  Aligned_cols=82  Identities=18%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      ..+.||++.|++..+.. .|+.+. .+..|+++.|.+.-.+.+ ++....+..++...|.....|. ++...+.++.+++
T Consensus        43 r~tvld~~s~r~vn~~~-n~s~~t-~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNLGK-NFSILT-RLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQ  118 (326)
T ss_pred             eeeeehhhhhHHHhhcc-chHHHH-HHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCc-cccccCCcchhhh
Confidence            67788888888776643 466666 788888888887777644 6667777778888888888875 6788888888888


Q ss_pred             CCCccc
Q psy10547        217 SDNNLT  222 (269)
Q Consensus       217 ~~n~l~  222 (269)
                      ..|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            888765

>KOG4308|consensus

Probab=91.13  E-value=0.0052  Score=55.28  Aligned_cols=15  Identities=53%  Similarity=0.587  Sum_probs=7.0

Q ss_pred             CCCCCEEEcCCCccc
Q psy10547        208 LNNLVTLKLSDNNLT  222 (269)
Q Consensus       208 l~~L~~L~L~~n~l~  222 (269)
                      ..++++|.+.+|.++
T Consensus       203 ~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVT  217 (478)
T ss_pred             cccHHHHhhhhcCcC
Confidence            334455555544443

>KOG3864|consensus

Probab=89.23  E-value=0.061  Score=42.23  Aligned_cols=81  Identities=26%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc-cChhhh-cCCCCCCEEeccCC-CCCCCCCCcccCCCCCCE
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETL-RHLKNLTLIDLSKN-KIGKIPDDSFSTLNNLVT  213 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~l~~n-~i~~i~~~~~~~l~~L~~  213 (269)
                      .++.+|-++..|....-+.+.++. +++.|.+.+++--. -.-+-+ +..++|+.|++++| +|++-.-..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccc-hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            577888888888887777777777 78888887775321 100111 23567888888877 456555445666777777


Q ss_pred             EEcCC
Q psy10547        214 LKLSD  218 (269)
Q Consensus       214 L~L~~  218 (269)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            77654

>KOG4308|consensus

Probab=88.09  E-value=0.004  Score=56.00  Aligned_cols=85  Identities=26%  Similarity=0.327  Sum_probs=38.9

Q ss_pred             cccEEEccCCCCCccC----hhhhcCCCC-CCEEeccCCCCCCCC----CCcccCC-CCCCEEEcCCCccc-----cccc
Q psy10547        162 TLKHLNLQENDLEQVP----VETLRHLKN-LTLIDLSKNKIGKIP----DDSFSTL-NNLVTLKLSDNNLT-----LYKN  226 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~i~~i~----~~~~~~l-~~L~~L~L~~n~l~-----~~p~  226 (269)
                      ++++|++.++.++...    ...+...+. +..+++..|++....    ...+..+ ..++.++++.|.|+     .+.+
T Consensus       205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~  284 (478)
T KOG4308|consen  205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE  284 (478)
T ss_pred             cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence            5555555555554211    122333333 444555555554321    0122233 34555666666554     2334


Q ss_pred             cccCcCCCceeeeccCcccc
Q psy10547        227 SFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       227 ~~~~l~~L~~l~l~~n~~~~  246 (269)
                      .+.....++.+.++.|.+.+
T Consensus       285 ~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  285 VLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhhhHHHHHhhcccCcccc
Confidence            44445555555555555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.30  E-value=0.51  Score=23.97  Aligned_cols=16  Identities=63%  Similarity=0.777  Sum_probs=8.4

Q ss_pred             CCCCEEeccCCCCCCC
Q psy10547        185 KNLTLIDLSKNKIGKI  200 (269)
Q Consensus       185 ~~L~~L~l~~n~i~~i  200 (269)
                      .+|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-12
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-12
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-08
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-07
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		9e-07
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		5e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-04
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-04

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 34/219 (15%)
Query: 27  CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPL--FKATLNKHVNTKVPLDLLYIN 84
           CP     +  LQ+  +     +  + +  N +++ P   F+A  N        L +L+++
Sbjct: 18  CP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN--------LTILWLH 64
Query: 85  NSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IKNLQ 142
           ++ +  I+   F G+  ++ L LS         NA      +R+++  TF+G+  +  L 
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSD--------NA-----QLRSVDPATFHGLGRLHTLH 111
Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
           L  C +  + P  FR L   L++L LQ+N L+ +P +T R L NLT + L  N+I  +P+
Sbjct: 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
            +F  L++L  L L  N +  ++ ++FR  +L   +TLY
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLY 207

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 34/219 (15%)
Query: 27  CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPL--FKATLNKHVNTKVPLDLLYIN 84
           CP     +  LQ+  +     +  + +  N +++ P   F+A  N        L +L+++
Sbjct: 17  CP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN--------LTILWLH 63
Query: 85  NSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IKNLQ 142
           ++ +  I+   F G+  ++ L LS         NA      +R+++  TF+G+  +  L 
Sbjct: 64  SNVLARIDAAAFTGLALLEQLDLSD--------NA-----QLRSVDPATFHGLGRLHTLH 110
Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
           L  C +  + P  FR L   L++L LQ+N L+ +P +T R L NLT + L  N+I  +P+
Sbjct: 111 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 169
Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
            +F  L++L  L L  N +  ++ ++FR  +L   +TLY
Sbjct: 170 RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLY 206

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 19/166 (11%)
Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L +L+++++A+  I+   F G+  ++ L LS         NA      +R ++  TF G+
Sbjct: 57  LTILWLHSNALAGIDAAAFTGLTLLEQLDLSD--------NA-----QLRVVDPTTFRGL 103
Query: 137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
             +  L L  C +  + P  FR L   L++L LQ+N+L+ +P  T R L NLT + L  N
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
           +I  +P+ +F  L++L  L L  N++  ++ ++FR  +L   +TLY
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR--DLGRLMTLY 206

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 116 PNAFRHLD----AIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE 170
           P   R LD     I+ +N++ F     ++ L+L+   ++++ P AF +L F L+ L L+ 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRS 89
Query: 171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 229
           N L+ +P+     L NLT +D+S+NKI  + D  F  L NL +L++ DN+L  +   +F 
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 230 GLELNNNLTLYK 241
           GL     LTL K
Sbjct: 150 GLNSLEQLTLEK 161

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 88  IRNINENTFNGIF---IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLS 144
           I++ ++NTF G+    +++L LSH  + S+    F  L  ++ +N             L+
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN-------------LA 298
Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
           + +IN I   AF  L+  L+ LNL  N L ++       L  +  IDL KN I  I D +
Sbjct: 299 YNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 205 FSTLNNLVTLKLSDNNLT 222
           F  L  L TL L DN LT
Sbjct: 358 FKFLEKLQTLDLRDNALT 375

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           +++HL+L    +  +       LK+L +++L+ NKI KI D++F  L+NL  L LS N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 222 T-LYKNSFRGLELNNNLTLYKN 242
             LY ++F GL     + L KN
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKN 348

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
           ++LNLQEN ++ +  +T +HL++L ++ LSKN + KI   +F+ L +L TL+L DN LT 
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 224 -------YKNSFRGLELNNN 236
                  Y +  R L L NN
Sbjct: 98  VPTQAFEYLSKLRELWLRNN 117

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
           ++LNLQEN ++ +  +T +HL++L ++ LSKN + KI   +F+ L +L TL+L DN LT 
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 224 -------YKNSFRGLELNNN 236
                  Y +  R L L NN
Sbjct: 98  VPTQAFEYLSKLRELWLRNN 117

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
           +L +Q N L++ P      +K  +    L LLY+N++ ++ +    F  +  KNL+    
Sbjct: 41  KLDLQSNKLSSLP------SKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL--KNLETLWV 92
Query: 110 RINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 169
             N +        D + N+ E          L+L   ++ S+ P  F  L   L +L+L 
Sbjct: 93  TDNKLQALPIGVFDQLVNLAE----------LRLDRNQLKSLPPRVFDSLT-KLTYLSLG 141
Query: 170 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSF 228
            N+L+ +P      L +L  + L  N++ ++P+ +F  L  L TLKL +N L  + + +F
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Query: 229 RGLELNNNLTLYKNSF 244
             LE    L L +N +
Sbjct: 202 DSLEKLKMLQLQENPW 217

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           K L L   +++S+   AF  L   L+ L L +N L+ +P    + LKNL  + ++ NK+ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 199 KIPDDSFSTLNNLVTLKLSDNNL 221
            +P   F  L NL  L+L  N L
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQL 121

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
           ++LNL EN+++ +  +T RHL +L ++ L +N I +I   +F+ L +L TL+L DN LT+
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 224 -------YKNSFRGLELNNN 236
                  Y +  R L L NN
Sbjct: 138 IPSGAFEYLSKLRELWLRNN 157

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--- 222
           LNL EN ++ + V + +HL++L ++ LS+N I  I   +F+ L NL TL+L DN LT   
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 223 ----LYKNSFRGLELNNN 236
               +Y +  + L L NN
Sbjct: 129 NGAFVYLSKLKELWLRNN 146

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 95  TFNGI---FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI 151
           TF G+    +K   LS  +I ++  + F H   +             + L L+   IN I
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-------------EQLTLAQNEINKI 314
Query: 152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211
             NAF  L   LK LNL +N L  +      +L  L ++DLS N I  + D SF  L NL
Sbjct: 315 DDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 212 VTLKLSDNNL 221
             L L  N L
Sbjct: 374 KELALDTNQL 383

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---- 133
           +D +  NNS I+++    +         L + R  ++  N    + A++ +   T+    
Sbjct: 43  IDQIIANNSDIKSVQGIQY---------LPNVRYLALGGNKLHDISALKELTNLTYLILT 93
Query: 134 --------NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
                   NG+F     +K L L   ++ S+    F  L   L +LNL  N L+ +P   
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGV 152
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
              L NLT +DLS N++  +P+  F  L  L  L+L  N L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           I  L L+H ++  + P  F     +  I +  FN I    L+   C+I  +         
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLA-ILDAGFNSI--SKLEPELCQILPL--------- 74
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             LK LNLQ N+L Q+  +T     NLT +DL  N I KI  + F    NL+ L LS N 
Sbjct: 75  --LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 221 LT 222
           L+
Sbjct: 133 LS 134

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---- 133
           +D +  NNS I+++    +         L + R  ++  N    + A++ +   T+    
Sbjct: 43  IDQIIANNSDIKSVQGIQY---------LPNVRYLALGGNKLHDISALKELTNLTYLILT 93
Query: 134 --------NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
                   NG+F     +K L L   ++ S+    F  L   L +L L  N L+ +P   
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLYLYHNQLQSLPKGV 152
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
              L NLT +DL  N++  +P+  F  L  L  L L+DN L
Sbjct: 153 FDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           I  ++L    I  I P AF     +R I+             LS+ +I+ + P+AF+ L 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRID-------------LSNNQISELAPDAFQGLR 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
            +L  L L  N + ++P      L +L L+ L+ NKI  +  D+F  L+NL  L L DN 
Sbjct: 81  -SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 221 L-TLYKNSFRGLELNNNLTLYKNSF 244
           L T+ K +F  L     + L +N F
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPF 164

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           I  ++L    I  I P AF     +R I+             LS+ +I+ + P+AF+ L 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRID-------------LSNNQISELAPDAFQGLR 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
            +L  L L  N + ++P      L +L L+ L+ NKI  +  D+F  L+NL  L L DN 
Sbjct: 81  -SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 221 L-TLYKNSFRGLELNNNLTLYKNSF 244
           L T+ K +F  L     + L +N F
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPF 164

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           LK LNLQ N+L Q+  +T     NLT + L  N I KI ++ F    NL+TL LS N L+
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           LK LNLQ N+L Q+  +T     NLT + L  N I KI ++ F    NL+TL LS N L+
Sbjct: 80  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           LK LNLQ N+L Q+  +T     NLT + L  N I KI ++ F    NL+TL LS N L+
Sbjct: 85  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 223 LYK 225
             K
Sbjct: 145 STK 147

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 165 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TL 223
            L L  N    VP E L + K+LTLIDLS N+I  + + SFS +  L+TL LS N L  +
Sbjct: 35  ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 224 YKNSFRGLELNNNLTLYKN 242
              +F GL+    L+L+ N
Sbjct: 94  PPRTFDGLKSLRLLSLHGN 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  108 bits (273), Expect = 1e-28
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 37/244 (15%)

Query: 39  STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDL--LYINNSAIRNINENTF 96
             C+C        S     L   P             +P     ++++ + I ++   +F
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVP-----------VGIPAASQRIFLHGNRISHVPAASF 52

Query: 97  NGI-FIKNLQLSHCRINSITPNAFRHLDA-----------IRNINENTFNG-IFIKNLQL 143
                +  L L    +  I   AF  L             +R+++  TF+G   +  L L
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 203
             C +  + P  FR L   L++L LQ+N L+ +P +T R L NLT + L  N+I  +P+ 
Sbjct: 113 DRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 204 SFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL--TLYKNSFRGLELSLKNL 254
           +F  L++L  L L  N +  ++ ++FR L       L  N    L   +   L  +L+ L
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYL 230

Query: 255 NLKN 258
            L +
Sbjct: 231 RLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 84  NNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IRNINENT 132
           +N+ +R+++  TF+G   +  L L  C +  + P  FR L A          ++ + ++T
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 133 FNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 191
           F  +  + +L L   RI+S+   AFR L  +L  L L +N +  V     R L  L  + 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 192 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           L  N +  +P ++ + L  L  L+L+DN  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 4e-28
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 31/221 (14%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA-- 124
             VP  +      L +  + I+ +N++ F     ++ L+L+   ++++ P AF +L    
Sbjct: 24  VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 125 --------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ 175
                   ++ I    F G+  +  L +S  +I  +    F+ L   LK L + +NDL  
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVY 142

Query: 176 VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELN 234
           +       L +L  + L K  +  IP ++ S L+ L+ L+L   N+  +   SF+ L   
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 235 NNLTLYKN---------SFRGLELSLKNLNLKNTKLKSVTP 266
             L +               GL  +L +L++ +  L +V  
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 1e-25
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IR 126
           L  L + ++ +  I+   F+G   ++ L L  C + SI   A  HL            I 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 127 NINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
            I + +F  ++ +K L++SH   ++++TPN    L   L  L++   +L  VP   +RHL
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHL 247

Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL 237
             L  ++LS N I  I       L  L  ++L    L  +   +FRGL       ++ N 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 238 --TLYKNSFRGLELSLKNLNLKN 258
             TL ++ F  +  +L+ L L +
Sbjct: 308 LTTLEESVFHSVG-NLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 2e-25
 Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA----------IR 126
           L  L + ++ ++ I    F G+  +  L +S  +I  +    F+ L            + 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 127 NINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
            I+   F+G   ++ L L  C + SI   A  HL   L  L L+  ++  +   + + L 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLY 200

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN-- 242
            L ++++S          +     NL +L ++  NLT +   + R L     L L  N  
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 243 ------SFRGLELSLKNLNLKNTKLKSVTP 266
                     L   L+ + L   +L  V P
Sbjct: 261 STIEGSMLHELL-RLQEIQLVGGQLAVVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 1e-24
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
            + L L   RI ++  + F     +               L+L+   ++++ P AF +L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEE-------------LELNENIVSAVEPGAFNNLF 80

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L+ L L+ N L+ +P+     L NLT +D+S+NKI  + D  F  L NL +L++ DN+
Sbjct: 81  -NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 221 LT-LYKNSFRG------LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTPY 267
           L  +   +F G      L L      ++   +   L   L  L L++  + ++  Y
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDY 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 8e-20
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 84  NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQL 143
           +   +  +  N   G+ + +L ++HC + ++   A RHL             ++++ L L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------VYLRFLNL 255

Query: 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 203
           S+  I++I  +    L   L+ + L    L  V     R L  L ++++S N++  + + 
Sbjct: 256 SYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 204 SFSTLNNLVTLKLSDNNL 221
            F ++ NL TL L  N L
Sbjct: 315 VFHSVGNLETLILDSNPL 332

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (272), Expect = 2e-27
 Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 54/273 (19%)

Query: 8   FHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFK 65
             L  L++      G +  CP          S C CS        + C    L   P   
Sbjct: 16  SLLSVLLMGCVAETGSAQTCP----------SVCSCS---NQFSKVICVRKNLREVP--- 59

Query: 66  ATLNKHVNTKVPLDL--LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHL 122
                     +  +   L ++ + I+ I  N+F     ++ LQLS   I +I   AF  L
Sbjct: 60  --------DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111

Query: 123 DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
             +               L+L   R+ +I   AF +L   LK L L+ N +E +P     
Sbjct: 112 ANLNT-------------LELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFN 157

Query: 183 HLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
            + +L  +DL +  ++  I + +F  L+NL  L L+  NL     +   L   + L L  
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG 216

Query: 242 N--------SFRGLELSLKNLNLKNTKLKSVTP 266
           N        SF+GL   L+ L +  ++++ +  
Sbjct: 217 NHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIER 248

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 2e-27
 Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 54/271 (19%)

Query: 10  LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFKAT 67
            +    + A    G   CP          S C CS        + C    L+  P     
Sbjct: 29  WILCAAIAAAASAGPQNCP----------SVCSCS---NQFSKVVCTRRGLSEVP----- 70

Query: 68  LNKHVNTKVPLDL--LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA 124
                   +P +   L +  + I+ I  +TF  +  ++ LQL    I  I   AF  L +
Sbjct: 71  ------QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 125 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
           +               L+L    +  I   AF +L   L+ L L+ N +E +P      +
Sbjct: 125 LN-------------TLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRV 170

Query: 185 KNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG------LELNNNL 237
            +L  +DL +  K+  I + +F  L NL  L L   N+     +         LE++ N 
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNH 229

Query: 238 --TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
              +   SF GL  SLK L + N+++  +  
Sbjct: 230 FPEIRPGSFHGLS-SLKKLWVMNSQVSLIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (251), Expect = 2e-24
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA-----------I 125
           L+ L + ++ +  I    F     ++ L L +  I SI   AF  + +           +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 126 RNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
             I+E  F G+F +K L L  C I  +       L   L+ L +  N   ++   +   L
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLV-GLEELEMSGNHFPEIRPGSFHGL 241

Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
            +L  + +  +++  I  ++F  L +LV L L+ NNL+ L  + F  L     L L+ N 
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 244 FR 245
           + 
Sbjct: 302 WN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 5e-24
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 26/204 (12%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRN---------- 127
           L  LYI+ + +  I  N  + +    L++   RI  +    F  L  +            
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSL--VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 128 --INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
                  F+G+ +  L++S  ++  I  +    L      L+L  N ++ + +E L    
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN----ELHLDHNKIQAIELEDLLRYS 217

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL-------NNNLT 238
            L  + L  N+I  I + S S L  L  L L +N L+        L+L        NN+T
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277

Query: 239 -LYKNSFRGLELSLKNLNLKNTKL 261
            +  N F  +   +K        L
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 7e-20
 Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 36/221 (16%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA-- 124
             VP ++      L + N+ I  + ++ F G+  +  L L + +I+ I   AF  L    
Sbjct: 46  KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 125 --------IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 176
                   +  I  N  +   +  L++   RI  +    F  L   +  + +  N LE  
Sbjct: 106 KLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENS 162

Query: 177 PVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG--- 230
             E      L  L  + +S+ K+  IP D       L  L L  N +  +          
Sbjct: 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSK 218

Query: 231 ---LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
              L L +N    +   S   L  +L+ L+L N KL  V  
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 78  LDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLDA-------IRNI 128
           ++ + +  + + N       F+G+ +  L++S  ++  I  +    L+        I+ I
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208

Query: 129 NENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
                     +  L L H +I  I   +   L  TL+ L+L  N L +VP   L  LK L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVP-AGLPDLKLL 266

Query: 188 TLIDLSKNKIGKIPDDSFSTLN------NLVTLKLSDNNLTLY---KNSFRGLELNNNLT 238
            ++ L  N I K+  + F  +           + L +N +  +     +FR +     + 
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

Query: 239 LYKN 242
               
Sbjct: 327 FGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 28/189 (14%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
            + +  N L N        +      + L+ L I+ + +  I ++    +    L L H 
Sbjct: 151 CIEMGGNPLENSGFEPGAFDG-----LKLNYLRISEAKLTGIPKDLPETL--NELHLDHN 203

Query: 110 RINSITPNAFRHLDA----------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
           +I +I                    IR I   + + +  ++ L L + +++ + P     
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPD 262

Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLK------NLTLIDLSKNKI--GKIPDDSFSTLNN 210
           L+  L+ + L  N++ +V V     +           I L  N +   ++   +F  + +
Sbjct: 263 LKL-LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 211 LVTLKLSDN 219
            + ++  + 
Sbjct: 322 RLAIQFGNY 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 2e-23
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 19/201 (9%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR----------- 126
           L+ LY++ + ++ + E     +  + L++    I  +  + F  L+ +            
Sbjct: 102 LERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 127 -NINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
             I    F G   +  ++++   I +I       L      L+L  N + +V   +L+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGL 215

Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSF 244
            NL  + LS N I  + + S +   +L  L L++N L          +    + L+ N+ 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

Query: 245 RGLELSLKNLNLKNTKLKSVT 265
             +  +       NTK  S +
Sbjct: 276 SAIGSNDFCPPGYNTKKASYS 296

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 4e-21
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
              L L + +I  I    F++L  +               L L + +I+ I+P AF  L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLH-------------TLILINNKISKISPGAFAPL- 99

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L+ L L +N L+++P +  + L+ L    + +N+I K+    F+ LN ++ ++L  N 
Sbjct: 100 VKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 221 LT---LYKNSFRGLELNNNLTLYKNSFRGLEL----SLKNLNLKNTKLKSVTPY 267
           L    +   +F+G++  + + +   +   +      SL  L+L   K+  V   
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 37/213 (17%), Positives = 84/213 (39%), Gaps = 28/213 (13%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN--INENTFNG-IFIKNLQL 106
           EL +  N++T   + K+  N        + ++ +  + +++  I    F G   +  +++
Sbjct: 125 ELRVHENEITK--VRKSVFNGLNQ----MIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 107 SHCRINSITPNAFRHLD-------AIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
           +   I +I       L         I  ++  +  G+  +  L LS   I+++   +  +
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF------STLNNLV 212
               L+ L+L  N L +VP   L   K + ++ L  N I  I  + F      +   +  
Sbjct: 239 TP-HLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 213 TLKLSDNNLTLYK---NSFRGLELNNNLTLYKN 242
            + L  N +  ++   ++FR + +   + L   
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
               L+LQ N + ++     ++LKNL  + L  NKI KI   +F+ L  L  L LS N L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 222 T-LYKNSFRGLE---LNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSV 264
             L +   + L+   ++ N    + K+ F GL   +  + L    LKS 
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSS 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 29/220 (13%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
           +LS+  N L+       +     +    L  L ++ + +  ++ N      +++L   H 
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111

Query: 110 RINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
            +  ++  + F  L  +               L +SH          F  L  +L+ L +
Sbjct: 112 NLKQMSEFSVFLSLRNLI-------------YLDISHTHTRVAFNGIFNGLS-SLEVLKM 157

Query: 169 QEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKN 226
             N   E    +    L+NLT +DLS+ ++ ++   +F++L++L  L +S NN   L   
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 227 SFRGLE------LNNNL--TLYKNSFRGLELSLKNLNLKN 258
            ++ L        + N   T  K   +    SL  LNL  
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 8e-19
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 27/190 (14%)

Query: 101 IKNLQLSHCRINSITPNAFRHLD------------AIRNINENTFNG-IFIKNLQLSHCR 147
              L+L   ++ S+    F  L             + +     +  G   +K L LS   
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
           + ++  + F  LE  L+HL+ Q ++L+Q+        L+NL  +D+S        +  F+
Sbjct: 90  VITM-SSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 207 TLNNLVTLKLSDNNL--TLYKNSFRG------LELNNNL--TLYKNSFRGLELSLKNLNL 256
            L++L  LK++ N+       + F        L+L+      L   +F  L  SL+ LN+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNM 206

Query: 257 KNTKLKSVTP 266
            +    S+  
Sbjct: 207 SHNNFFSLDT 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLNNLVTLKLSDN 219
           +   L L+ N L+ +P      L  LT + LS N +        S     +L  L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 220 NLTLYKNSFRGLELNNNLTLYKNS---------FRGLELSLKNLNLKNTKLKSVTPYW 268
            +    ++F GLE   +L    ++         F  L  +L  L++ +T  +      
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGI 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 222
             +      L  VP         L   +L  NK+  +P   F  L  L  L LS N L+ 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 223 --LYKNSFRGL----ELN---NNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPY 267
                 S  G      L+   N +    ++F GLE  L++L+ +++ LK ++ +
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEF 119

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 6e-21
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
             ++   NS +R +     +    ++ L L+  +I  I   AF +   I+          
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK--------- 97

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
               L +    I  + P+ F+++   L  L L+ NDL  +P     +   LT + +S N 
Sbjct: 98  ----LYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGL--ELSLKN 253
           + +I DD+F    +L  L+LS N LT +  +    L    +  +  N    L   ++++ 
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLSTLAIPIAVEE 209

Query: 254 LNLKNTKLKSVTP 266
           L+  +  +  V  
Sbjct: 210 LDASHNSINVVRG 222

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 16/197 (8%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTF 133
           L  L ++N+ +  I ++TF     ++NLQLS  R+  +  +      H +   N+     
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202

Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
             I ++ L  SH  IN +       L      L LQ N+L       L +   L  +DLS
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 256

Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL---- 249
            N++ KI    F  +  L  L +S+N L       + +     L L  N    +E     
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 250 --SLKNLNLKNTKLKSV 264
              L+NL L +  + ++
Sbjct: 317 FDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 21/156 (13%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDA----------IRN 127
           ++ L  ++++I  +       +    L+L H  +         +             +  
Sbjct: 207 VEELDASHNSINVVRGPVNVEL--TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262

Query: 128 INENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
           I  + F  +  ++ L +S+ R+ ++     + +  TLK L+L  N L  V          
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHNHLLHVE-RNQPQFDR 319

Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           L  + L  N I  +     ST + L  L LS N+  
Sbjct: 320 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 352

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           + L  +N   +             I  L LS           F    A   I     +  
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
           +       H          F+ LE + +K  +L ++ +  +      H  +L  + L++N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL--TLYKNSFRG 246
           +I KI D++F  L +L+ L LS N L  +    F  L+      L+ N    L   SF G
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 247 LELSLKNLNLKNTKLKSVTP 266
           L  +LK L L   +LKSV  
Sbjct: 370 LP-NLKELALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 49  NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQ--- 105
           N             +    +   + +          ++  ++ +  TF G+    ++   
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 106 LSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 165
           LS  +I ++  + F H   +  +              L+   IN I  NAF  L   L  
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLT-------------LAQNEINKIDDNAFWGLT-HLLK 327

Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLY 224
           LNL +N L  +      +L  L ++DLS N I  + D SF  L NL  L L  N L ++ 
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 225 KNSFRGLELNNNLTLYKNSFR 245
              F  L     + L+ N + 
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPV 178
           R L  +  +  +         + LS   I  +   +F  L+  L+ L +++      +  
Sbjct: 20  RGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRN 72

Query: 179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
            T R L +L ++ L  N+  ++   +F+ L NL  L L+  NL                 
Sbjct: 73  NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-------------GAV 119

Query: 239 LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
           L  N F+ L  SL+ L L++  +K + P
Sbjct: 120 LSGNFFKPLT-SLEMLVLRDNNIKKIQP 146

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 28/182 (15%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN-SITPNAFRHL 159
           +  + LS   I  +   +F  L  ++              L++        I  N FR L
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQ-------------FLKVEQQTPGLVIRNNTFRGL 78

Query: 160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI--GKIPDDSFSTLNNLVTLKLS 217
             +L  L L  N   Q+       L NL ++ L++  +    +  + F  L +L  L L 
Sbjct: 79  S-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 218 DNNLTLYK--------NSFRGLELNNNL--TLYKNSFRGLE-LSLKNLNLKNTKLKSVTP 266
           DNN+   +          F  L+L  N   ++ +      +      L L +  L+ +  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 267 YW 268
           YW
Sbjct: 198 YW 199

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 49/225 (21%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS--ITPNAFRHLDAIRNINENTFN 134
           L +L ++ +    +    FNG+  ++ L L+ C ++   ++ N F+ L ++         
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL--------- 131

Query: 135 GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR----------HL 184
               + L L    I  I P +F         L+L  N ++ +  E L            L
Sbjct: 132 ----EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---------------------- 222
            ++TL D+++  +G     +     ++ TL LS N                         
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 223 LYKNSFRGLELNNNLTLYKNSFRGLELS-LKNLNLKNTKLKSVTP 266
              N        N       +F+GLE S +K  +L  +K+ ++  
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           I  L L+H ++  +    F     + +++             +    I+ + P   + L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLD-------------VGFNTISKLEPELCQKLP 73

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             LK LNLQ N+L Q+  +T     NLT + L  N I KI ++ F    NL+TL LS N 
Sbjct: 74  -MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 221 LT-LYKNSFRGLELNNNLTLYKNSFRGLE---------LSLKNLNLKNTKLKSVTP 266
           L+     +   LE    L L  N  + L+          SLK L L + ++K  +P
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 26/213 (12%)

Query: 81  LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IRNIN 129
           L + ++ +R +    F     + +L +    I+ + P   + L            +  ++
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 130 ENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
           + TF     +  L L    I  I  N F   +  L  L+L  N L    + T   L+NL 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 189 LIDLSKNKIGKIPDDSFSTLNN--LVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFR 245
            + LS NKI  +  +      N  L  L+LS N +       F  +     L L      
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 246 GL----------ELSLKNLNLKNTKLKSVTPYW 268
                         S++NL+L N++L + +   
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 30/217 (13%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------ 124
                I+ +++  I++ +F  +  +++L +    I  I  N F  L              
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 125 IRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVET 180
           +R +   TF  +    L    L+  +I+ I  +AF  L   L+ L+L  N++ Q +  + 
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQE 425

Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLEL---- 233
            R L+N+  I LS NK  ++  +SF+ + +L  L L    L       + F+ L      
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 234 ---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
              NNN+  +  +   GLE  L+ L+L++  L  +  
Sbjct: 486 DLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 25/207 (12%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLDAIR--NINENT 132
           L  L ++N+ I+ +     +     +L+   LS  +I   +P  F  +  +    +N   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 133 FNGIF------------IKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVE 179
                            I+NL LS+ ++++ +   F  L++T L  L+L  N+L  V  +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL 239
           +   L  L    L  N I  +   S   L N+  L L  +           + L +   +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ------SISLASLPKI 320

Query: 240 YKNSFRGLELSLKNLNLKNTKLKSVTP 266
              SF+ L+  L++LN+++  +  +  
Sbjct: 321 DDFSFQWLK-CLEHLNMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 43/243 (17%)

Query: 49  NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQ--- 105
             L +    L      K  L     +   +  L ++NS +   +  TF G+   NL    
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTS---IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 106 LSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 165
           LS+  +N +  ++F  L               ++   L +  I  +  ++   L F +++
Sbjct: 255 LSYNNLNVVGNDSFAWLP-------------QLEYFFLEYNNIQHLFSHSLHGL-FNVRY 300

Query: 166 LNLQEN---------DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
           LNL+ +          L ++   + + LK L  +++  N I  I  + F+ L NL  L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 217 SDNNL---TLYKNSFRGLEL---------NNNLT-LYKNSFRGLELSLKNLNLKNTKLKS 263
           S++     TL   +F  L            N ++ +  ++F  L   L+ L+L   ++  
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQ 419

Query: 264 VTP 266
              
Sbjct: 420 ELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 39/205 (19%)

Query: 84  NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI---- 136
            N   + +    + G+  I  + LS+ +   +T N+F  + +++ +         +    
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 137 -FIKNLQ------LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV--------PVETL 181
              + L+      LS+  I +I  +    LE  L+ L+LQ N+L ++        P+  L
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
           + L +L +++L  N   +IP + F  L  L  + L  NNL                TL  
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN---------------TLPA 577

Query: 242 NSFRGLELSLKNLNLKNTKLKSVTP 266
           + F     SLK+LNL+   + SV  
Sbjct: 578 SVFNNQV-SLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 39/200 (19%), Positives = 80/200 (40%), Gaps = 36/200 (18%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT--PNAFRHLDAIR--NINENT 132
           +  +Y++ +    +  N+F  +  ++ L L    + ++   P+ F+ L  +   +++ N 
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 133 FNGI---------FIKNLQLSHCRINSITPNAFRHLEFT-------LKHLNLQENDLEQV 176
              I          ++ L L H  +  +  +A              L  LNL+ N  +++
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 177 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN 236
           PVE  + L  L +IDL  N +  +P   F+   +L +L L  N +T              
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-------------- 597

Query: 237 LTLYKNSFRGLELSLKNLNL 256
            ++ K  F     +L  L++
Sbjct: 598 -SVEKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSH 108
            L ++   L N     +      N    L +L ++N+ I NIN++   G+  ++ L L H
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRN----LTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 109 CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
             +  +  +A                   +  L L     + I    F+ L   LK ++L
Sbjct: 514 NNLARLWKHAN-----PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDL 567

Query: 169 QENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST-LNNLVTLKLSDNNLT 222
             N+L  +P     +  +L  ++L KN I  +    F     NL  L +  N   
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 30/209 (14%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
            ++P  L      L  + + +  I   TF+  I +  L L+ C+I  I  + F+    + 
Sbjct: 25  NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
                         L L+   +  +   A    +  LKHL   +  +  +    L + K 
Sbjct: 85  T-------------LVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY--KNS 243
           L  + L  N I  I          L  L   +N +  L K     L+   NL+L    N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 244 FRGLE------LSLKNLNLKNTKLKSVTP 266
             G+E         ++LN   T+   V  
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------ 124
           L+ LY+ ++ I +I          +K L   +  I+ ++      L              
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 125 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRH 183
           I  I    F+    ++L     +   +     ++     L     ++ D E +       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 184 LKNLTL--IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG------LELNN 235
           L  +++  I+L K+    I  ++F   + L  L L+  +L+   +   G      L L+ 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 236 NL--TLYKNSFRGLELSLKNLNLKN 258
           N    L + S      SL +L++K 
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKG 334

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 43/271 (15%), Positives = 88/271 (32%), Gaps = 51/271 (18%)

Query: 46  NTANELSIQCNDLTNYPLFKATLNKHVNTKVP-LDLLYINNSAIRNINENTFNGIF---I 101
              +    Q  +               N+ +  L L    +    +I+   F G+    +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 102 KNLQLSHCRINSITPNAFRHLDA----------IRNINENTFNGIFIKNLQLSHCRINSI 151
           +++ L      +I+ N F               +  +         +K L LS  +  ++
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

Query: 152 TPNAFRHLEF------------------------TLKHLNLQENDLEQVPV--ETLRHLK 185
              +  +                            L+ L+L  +D+E        LR+L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLEL-------NNN 236
           +L  ++LS N+   +  ++F     L  L L+   L     ++ F+ L L       ++ 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 237 LT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
           L    +  F GL  +L++LNL+         
Sbjct: 437 LDISSEQLFDGLP-ALQHLNLQGNHFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 36/217 (16%), Positives = 87/217 (40%), Gaps = 30/217 (13%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSH-CRINSITPNAFRHLDAIR--NINENTF 133
           L  L ++ +   N+ + + +    + +L +    +   +      +L+ +R  +++ +  
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 134 NGIFIKN-----------LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET-L 181
                 N           L LS+    S+   AF+     L+ L+L    L+    ++  
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPF 421

Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLEL---- 233
           ++L  L +++LS + +    +  F  L  L  L L  N+         NS + L      
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 234 ---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
                +L+ + +++F  L+  + +++L + +L S + 
Sbjct: 482 VLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 18/161 (11%)

Query: 78  LDLLYINNSAIRNIN-ENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF 133
           L+LL +  + ++  + ++ F  +  +K L LSH  ++  +   F  L A++  N+  N F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 134 NGIFI------------KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
               I            + L LS C ++SI  +AF  L+  + H++L  N L    +E L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEAL 520

Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
            HLK + L +L+ N I  I       L+   T+ L  N L 
Sbjct: 521 SHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 28/215 (13%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IR 126
           L  L +    I  I+E+TF     +  L L+   +  +   A     A          I 
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 127 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
           +I+    +    +++L L    I+SI        E  LK L+ Q N +  +  E +  L+
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 186 NLTLI--DLSKNKIGKIPDDSFSTLNNLVTLKLSDN-----------NLTLYKNSFRGLE 232
             T +  +L+ N I  I   +F       +L                N T+        E
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 233 LNNNLTLYKNSFRGL-ELSLKNLNLKNTKLKSVTP 266
             ++  +    F GL E+S++++NL+     +++ 
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSH 108
           EL +  +D+         L    +    L  L ++ +   ++    F     ++ L L+ 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 109 CRINSITPNAF-------RHLD----AIRNINENTFNGIF-IKNLQLSHCRINSIT---P 153
            R+      +        + L+     +   +E  F+G+  +++L L             
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213
           N+ + L   L+ L L   DL  +       LK +  +DLS N++     ++ S L  +  
Sbjct: 470 NSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY- 527

Query: 214 LKLSDNNLT-LYKNSFRGLELNNNLTLYKNSF 244
           L L+ N+++ +  +    L     + L +N  
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           K     +  +N I        E     L    N L  +   T   L NLT +DL++ +I 
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTE----CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG------LELNNNL--TLYKNSFRGLEL 249
            I +D+F + + L TL L+ N L  + + +  G      L        ++        + 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK- 129

Query: 250 SLKNLNLKNTKLKSVTP 266
           +L++L L +  + S+  
Sbjct: 130 TLESLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 37/180 (20%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT---PNAFRHLDA--------- 124
           L +L +++S +   +E  F+G+  +++L L             N+ + L           
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 125 -IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
            + +I+++ F  +  + ++ LSH R+ S +  A  HL     +LNL  N +  +    L 
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLP 544

Query: 183 HLKNLTLIDLSKN--------------------KIGKIPDDSFSTLNNLVTLKLSDNNLT 222
            L     I+L +N                    K+    D        L  ++LSD  L+
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
           K  N +   L ++P       + L   + S N +  I + +FS L NL  L L+   +  
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY- 70

Query: 224 YKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
                          +++++F+     L  L L    L  +    
Sbjct: 71  --------------WIHEDTFQSQH-RLDTLVLTANPLIFMAETA 100

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 33/212 (15%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIR 126
            K+P +L      L ++ + +R++   +F     ++ L LS C I +I   A++ L  + 
Sbjct: 20  YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL- 78

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
                         L L+   I S+   AF  L  +L+ L   E +L  +    + HLK 
Sbjct: 79  ------------STLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125

Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL----ELNNNLTLY 240
           L  ++++ N I      + FS L NL  L LS N +  +Y    R L     LN +L L 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 241 KNSFRGLE------LSLKNLNLKNTKLKSVTP 266
            N    ++      + LK L L   +LKSV  
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 7e-14
 Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINEN--- 131
           L  L +  + I+++    F+G   ++ L      + S+      HL  ++  N+  N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 132 --TFNGIF-----IKNLQLSHCRINSITPNAFRH---LEFTLKHLNLQENDLEQVPVETL 181
                  F     +++L LS  +I SI     R    +      L+L  N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
           + +  L  + L  N++  +PD  F  L +L  + L  N
Sbjct: 198 KEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
             ++   NS +R +     +    ++ L L+  +I  I   AF +   I+          
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK--------- 103

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
               L +    I  + P+ F+++   L  L L+ NDL  +P     +   LT + +S N 
Sbjct: 104 ----LYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGL--ELSLKN 253
           + +I DD+F    +L  L+LS N LT +  +    L    +  +  N    L   ++++ 
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLSTLAIPIAVEE 215

Query: 254 LNLKNTKLKSVTP 266
           L+  +  +  V  
Sbjct: 216 LDASHNSINVVRG 228

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 16/199 (8%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTF 133
           L  L ++N+ +  I ++TF     ++NLQLS  R+  +  +      H +   N+     
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208

Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
             I ++ L  SH  IN +       L      L LQ N+L       L +   L  +DLS
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 262

Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL---- 249
            N++ KI    F  +  L  L +S+N L       + +     L L  N    +E     
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322

Query: 250 --SLKNLNLKNTKLKSVTP 266
              L+NL L +  + ++  
Sbjct: 323 FDRLENLYLDHNSIVTLKL 341

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
             ++L    I  I P AF     +R              + LS+ +I+ + P+AF+ L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRR-------------IDLSNNQISELAPDAFQGLR- 80

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           +L  L L  N + ++P      L +L L+ L+ NKI  +  D+F  L+NL  L L DN L
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 222 -TLYKNSFRGLELNNNLTLYKNSF 244
            T+ K +F  L     + L +N F
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNS- 243
            +T I L +N I  IP  +FS    L  + LS+N +  L  ++F+GL   N+L LY N  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 244 -------FRGLELSLKNLNLKNTKLKSV 264
                  F GL  SL+ L L   K+  +
Sbjct: 93  TELPKSLFEGLF-SLQLLLLNANKINCL 119

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 4e-19
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 30/216 (13%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF- 133
           L  L + ++ I  I E++F+ +  +++L LS+  +++++ + F+ L ++   N+  N + 
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 134 ----NGIFIKNLQLSH------CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
                 +F    +L             I    F  L F L+ L +  +DL+    ++L+ 
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKS 196

Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL---------TLYKNSFRGLELN 234
           ++N++ + L   +   + +      +++  L+L D +L         T   NS       
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 235 NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSV 264
            N+ +   S   +         L  L     +LKSV
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           +K+L LS+ RI  I+ +  +     L+ L L  N +  +  ++   L +L  +DLS N +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLELNNNLTLYKNS---------FRG 246
             +    F  L++L  L L  N        + F  L     L +             F G
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 247 LELSLKNLNLKNTKLKSVTP 266
           L   L+ L +  + L+S  P
Sbjct: 173 LT-FLEELEIDASDLQSYEP 191

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 9e-14
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L+ L I+ S +++    +   I  + +L L   +   +         ++  +        
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE------- 228

Query: 137 FIKNLQLSHCRINSITPNAFRHLE--FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 194
            +++  L     + ++      L   FT +++ + +  L QV  + L  +  L  ++ S+
Sbjct: 229 -LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSR 286

Query: 195 NKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           N++  +PD  F  L +L  + L  N   
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
            +K L+L  N +  +    L+   NL  + L+ N I  I +DSFS+L +L  L LS N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 222 T-LYKNSFRGLELNNNLTLYKNS---------FRGLELSLKNLNLKNTKLKSVTP 266
           + L  + F+ L     L L  N          F  L                +  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
            +  +DLS N+I  I +       NL  L L+ N +                T+ ++SF 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------------TIEEDSFS 97

Query: 246 GLELSLKNLNLKNTKLKSVTPYW 268
            L  SL++L+L    L +++  W
Sbjct: 98  SLG-SLEHLDLSYNYLSNLSSSW 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.6 bits (212), Expect = 5e-19
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 17/204 (8%)

Query: 78  LDLLYINNSAIRNINE-------NTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINE 130
           L    +  +++ +          N F  + ++ L +S           F +  +      
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 131 NTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTL 189
                  I         I     N F  L  + ++HL+L    +  +       LK+L +
Sbjct: 236 LILAHH-IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE 248
           ++L+ NKI KI D++F  L+NL  L LS N L  LY ++F GL     + L KN    ++
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 249 L-------SLKNLNLKNTKLKSVT 265
                    L+ L+L++  L ++ 
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 31/239 (12%)

Query: 47  TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF---IKN 103
           T +      N ++    F   L  H      +         I++ ++NTF G+    +++
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHH------IMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 104 LQLSHCRINSITPNAFRHLD----------AIRNINENTFNGIF-IKNLQLSHCRINSIT 152
           L LSH  + S+    F  L            I  I +  F G+  ++ L LS+  +  + 
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
            + F  L   + +++LQ+N +  +  +T + L+ L  +DL  N +  I       + ++ 
Sbjct: 331 SSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIP 384

Query: 213 TLKLSDNNLT-LYKNSFRGLEL---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
            + LS N L  L K +     +    N L  L    F      L+ L L   +  S + 
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 32/197 (16%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIR-----------NINENTFNG-IFIKNLQLSHCRI 148
            + L LS   I ++T ++F  L+ ++            I++  F     ++ L L   +I
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHLKNLTLIDLSKNKIGKIP-DDSF 205
             + P+AF+ L   L  L L    L    +     R+LK LT +DLSKN+I  +    SF
Sbjct: 86  YFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 206 STLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY--KNSFRGLE-------------L 249
             LN+L ++  S N +  + ++    L+           NS                  +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 250 SLKNLNLKNTKLKSVTP 266
            L+ L++          
Sbjct: 205 VLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 9e-15
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLDAIRNINENTFN 134
           L  +  +++ I  + E+    +  K L    L+   + S     +           N F 
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC-------MNPFR 202

Query: 135 GIFIKNLQLSHCRINSITPNAFRH-----------LEFTLKHLNLQENDLEQVPVETLRH 183
            + ++ L +S           F +           L   +       ++++     T   
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 184 LKNLTL--IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
           L   ++  +DLS   +  +    F TL +L  L L+ N +                 +  
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---------------KIAD 307

Query: 242 NSFRGLELSLKNLNLKNTKLKSVTPYW 268
            +F GL+ +L+ LNL    L  +    
Sbjct: 308 EAFYGLD-NLQVLNLSYNLLGELYSSN 333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR--HLDAIRNINENTFNGIFI 138
           L + ++A+  I+        I ++ LS  ++ ++         +    N  EN     F+
Sbjct: 367 LDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422

Query: 139 KNLQ------LSHCRINSITPNAFRHLEFTLKHLNLQENDLE-----QVPVETLRHLKNL 187
             +       L+  R +S + +       +L+ L L EN L+     ++  +    L +L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELNNN--LTLY 240
            ++ L+ N +  +P   FS L  L  L L+ N LT         +   L+++ N  L   
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542

Query: 241 KNSFRGLELSLKNLN 255
            + F  L +     N
Sbjct: 543 PDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 46/230 (20%)

Query: 84  NNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR------------NINE 130
           +      I++  F     ++ L L   +I  + P+AF+ L  +              + +
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 131 NTFNGI-FIKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
             F  +  +  L LS  +I S+  + +F  L   LK ++   N +  V    L  L+  T
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 189 L--IDLSKNKIGKIPDDSFSTLNN------LVTLKLSDNNLTL----------------- 223
           L    L+ N +       +    N      L  L +S N  T+                 
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 224 --YKNSFRGLELNNN--LTLYKNSFRGL-ELSLKNLNLKNTKLKSVTPYW 268
               +   G     +      +N+F GL   S+++L+L +  + S+    
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 37/225 (16%)

Query: 40  TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF--N 97
           T I    +  ++ +  N L   P    T N          L++++ + + N++   F   
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTAN----------LIHLSENRLENLDILYFLLR 424

Query: 98  GIFIKNLQLSHCRINSITPNAF-------RHLD----AIRNINENTFNGIFIKNLQ---- 142
              ++ L L+  R +S + +           L      ++   E        + L     
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 143 --LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
             L+H  +NS+ P  F HL   L+ L+L  N L  +    L    NL ++D+S+N++   
Sbjct: 485 LYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAP 541

Query: 201 PDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGLELNNNLTLYKNS 243
             D F +L+    L ++ N        ++F     + N+T+    
Sbjct: 542 NPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
           F  +    +  +L QVP    + L     + LS N I  +   SF  L  L  L+L    
Sbjct: 4   FDGRIAFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
             L              T+ K +FR L  +L+ L+L ++K+  + P  
Sbjct: 60  TPL--------------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDA 92

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 41/243 (16%)

Query: 39  STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG 98
             C C      +  + C D+   P    +             L +  + +R I  + F+ 
Sbjct: 6   PPCECHQEE--DFRVTCKDIQRIPSLPPSTQT----------LKLIETHLRTIPSHAFSN 53

Query: 99  I-FIKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCR-INSITPNA 155
           +  I  + +S    +  +  ++F +L  + +             +++ + R +  I P+A
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTH-------------IEIRNTRNLTYIDPDA 100

Query: 156 FRHLEFTLKHLNLQENDLEQVPVET-LRHLKNLTLIDLSKN-KIGKIPDDSFSTLNN-LV 212
            + L   LK L +    L+  P  T +       +++++ N  +  IP ++F  L N  +
Sbjct: 101 LKELP-LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 213 TLKLSDNNLT-LYKNSFRGLEL-------NNNLT-LYKNSFRGLELSLKNLNLKNTKLKS 263
           TLKL +N  T +   +F G +L       N  LT + K++F G+      L++  T + +
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 264 VTP 266
           +  
Sbjct: 220 LPS 222

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 84  NNSAIRNINENTFNGIF-IKNLQLSHC-RINSITPNAFRHLDAIR--NINENTF----NG 135
            N  +  I  + F+ +  +  +++     +  I P AF++L  ++   I+        + 
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 136 IFIKNLQLSH------CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 189
             I +LQ           I++I  N+F  L F    L L +N ++++        +   L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN----SF 244
                N + ++P+D F   +  V L +S   +  L       L+     + Y      + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

Query: 245 RGLELSLKNLNLKN 258
             L ++L   +L  
Sbjct: 243 EKL-VALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 26/190 (13%)

Query: 101 IKNLQLSHCRINSITPNAFRHL-----------DAIRNINENTFNGIF-IKNLQLSHC-R 147
              L+    ++  I   AF              D +  I  + F+ +  +  +++     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN-KIGKIPDDSFS 206
           +  I P AF++L   L++L +    ++ +P     H     L+D+  N  I  I  +SF 
Sbjct: 92  LLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 207 TL-NNLVTLKLSDNNLT-LYKNSFRGLEL-------NNNLT-LYKNSFRGLELSLKNLNL 256
            L    V L L+ N +  ++ ++F G +L       NNNL  L  + F G       L++
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDI 209

Query: 257 KNTKLKSVTP 266
             T++ S+  
Sbjct: 210 SRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 15/114 (13%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           + +    QE+ + ++P +  R   N   +     K+  I   +FS   +L  +++S N++
Sbjct: 10  SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 222 T--LYKNSFRGL--------ELNNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
              +  + F  L        E  NNL  +   +F+ L  +L+ L + NT +K +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHL 119

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 27/179 (15%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
            KN+ LS   +  +   +F +                ++ L LS C I +I   A+  L 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNF-------------SELQWLDLSRCEIETIEDKAWHGLH 80

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L +L L  N ++     +   L +L  +   + K+  +       L  L  L ++ N 
Sbjct: 81  -HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 221 LTLYK--NSFRGLELNNNLTLYKNSF-----------RGLELSLKNLNLKNTKLKSVTP 266
           +   K    F  L    ++ L  N             R       +L++    +  +  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L  L ++   I  I +  ++G+  + NL L+   I S +P +F  L +            
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS------------ 105

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKN 195
            ++NL     ++ S+       L  TLK LN+  N +    +     +L NL  +DLS N
Sbjct: 106 -LENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 196 KIGKIPDDSFSTLNNL----VTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLELS 250
            I  I  +    L       ++L +S N +  +   +F+G++L + LTL  N      + 
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL-HELTLRGNFNSSNIMK 222

Query: 251 LKNLNLKNTKLKS 263
               NL    +  
Sbjct: 223 TCLQNLAGLHVHR 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP-NAFRHLDAIR--NINENTFN 134
           L  L ++ +    ++ N      +++L   H  +  +T  +AF  L+ +   +I+     
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 135 GIF---------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
             F         +  L+++       T +        L  L+L +  LEQ+       L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSF 244
            L L+++S N +  +    ++ L +L TL  S N +           +      L  NS 
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 245 R 245
            
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 43/227 (18%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTFNGIF 137
           + +   +I+ + +   +    ++L +  C++           + L    N    +F  + 
Sbjct: 290 MSLAGVSIKYLEDVPKH-FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348

Query: 138 IKNLQ---LSHCRINSITPNAFRHLEFT------------------------LKHLNLQE 170
           + +L    LS   ++     ++  L                           L+HL+ Q 
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 171 NDLEQV-PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNS 227
           + L++V        L+ L  +D+S        D  F  L +L TLK++ N+       N 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 228 FRG------LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
           F        L+L+      +    F  L   L+ LN+ +  L  +  
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
            Q    +++ +  +         K+++L  N L+ +   +  +   L  +DLS+ +I  I
Sbjct: 16  YQCMDQKLSKVPDDIPSST----KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 201 PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE-------LSLK 252
            D ++  L++L  L L+ N +      SF GL    NL   +     LE       ++LK
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 253 NLNLKNTKLKSVTP 266
            LN+ +  + S   
Sbjct: 132 KLNVAHNFIHSCKL 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 81  LYINNSAIRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLDAIRNIN-------- 129
            + +   +     +   G   + I   +L++    S     F  L  +  ++        
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 130 -ENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
            E+       ++L +  C++          L    K L L  N            L +L+
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL----KSLTLTMNKGSISF--KKVALPSLS 353

Query: 189 LIDLSKNKIGKIPDDSFSTLN--NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
            +DLS+N +      S+S L   +L  L LS N   +   +F GLE   +L    ++ + 
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413

Query: 247 LE--------LSLKNLNLKNTKLKSVTPY 267
           +           L  L++  T  K     
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 36/223 (16%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
           L  L +  + I++ +  +F+G+  ++NL     ++ S+       L  ++  N+  N  +
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 135 GIFI----------KNLQLSHCRINSITPNAF---RHLEFTLKHLNLQENDLEQVPVETL 181
              +           ++ LS+  I +IT N     R        L++  N ++ +  +  
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 182 RHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNL-------TLYKNSFRGLE- 232
           + +  L  + L  N     I       L  L   +L                +   GL  
Sbjct: 202 QGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 233 ---------LNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
                      N+ +     F  L  ++  ++L    +K +  
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKYLED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 16/200 (8%)

Query: 73  NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINS-ITPNAFRHLDAIRNINEN 131
                   L ++ + I  I +  F GI +  L L     +S I     ++L  +      
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR-- 235

Query: 132 TFNGIFIKNLQLSHCRINSITPNAFRHLEF-TLKHLNLQENDLEQVPVETLRHLKNLTLI 190
                 I         +    P+    L   T+    L   +     +     L N++ +
Sbjct: 236 -----LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE---LNNNLTLYKNSFRG 246
            L+   I  + D          +L +    L          L+   L  N          
Sbjct: 291 SLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348

Query: 247 LELSLKNLNLKNTKLKSVTP 266
           L  SL  L+L    L     
Sbjct: 349 LP-SLSYLDLSRNALSFSGC 367

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
                   +  L +VP +     KN+   DLS N +  +   SFS  + L  L LS   +
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68

Query: 222 T-LYKNSFRGLEL--------NNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
             +   ++ GL          N   +    SF GL  SL+NL    TKL S+  
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLES 121

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 24/172 (13%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
           K L L   +++S+   AF  L  +             + L L+  ++ ++    F+ L+ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKL-------------RLLYLNDNKLQTLPAGIFKELK- 85

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
            L+ L + +N L+ +P+     L NL  + L +N++  +P   F +L  L  L L  N L
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 222 T-LYKNSFRGLELNNNLTLYKN--------SFRGLELSLKNLNLKNTKLKSV 264
             L K  F  L     L LY N        +F  L   LK L L N +LK V
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF- 133
           L LLY+N++ ++ +    F  +  ++ L ++  ++ ++    F  L  +    ++ N   
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

Query: 134 ---NGIFIK-----NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
                +F        L L +  + S+    F  L  +LK L L  N L++VP      L 
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLT 181

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
            L  + L  N++ ++P+ +F +L  L  L+L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.7 bits (199), Expect = 1e-17
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 78  LDLLYINNSAIRNINENTFNGIFI-KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           L  L ++++ +  I+   F  +   + L LS   ++++    F  L A+           
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV--------- 116

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET---LRHLKNLTLIDLS 193
               L L +  I  +  NAF  +   L+ L L +N + + PVE       L  L L+DLS
Sbjct: 117 ----LLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171

Query: 194 KNKIGKIPDDSFSTLNNLV--TLKLSDNNLT 222
            NK+ K+P      L   V   L L +N L 
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.0 bits (192), Expect = 1e-16
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L LSH  ++ +           L  L L  N L  +  E    + NL  +DLS N +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG------LELNNNL--TLYKNSFRGLE 248
             + +  FS L  L  L L +N++  + +N+F        L L+ N          +   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 249 L--SLKNLNLKNTKLKSVTP 266
               L  L+L + KLK +  
Sbjct: 161 KLPKLMLLDLSSNKLKKLPL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 33/212 (15%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
            K+P +L      L ++ + +R++   +F     ++ L LS C I +I   A++ L  + 
Sbjct: 20  YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
            +              L+   I S+   AF  L  +L+ L   E +L  +    + HLK 
Sbjct: 80  TLI-------------LTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125

Query: 187 LTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE----LNNNLTLY 240
           L  ++++ N I      + FS L NL  L LS N +  +Y    R L     LN +L L 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 241 KNSFRGLE------LSLKNLNLKNTKLKSVTP 266
            N    ++      + L  L L+N        
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 28/226 (12%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
            L+I+   L     +   +    N    +    + +  I  + + ++N    ++L+L +C
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC 314

Query: 110 RINSITPNAF---RHLDAIRNINENTFNGIFIKNLQ---LSHCRINSI--TPNAFRHLEF 161
           +            + L    N   N F+ + + +L+   LS   ++       +      
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT- 373

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNN 220
           +LK+L+L  N +  +       L+ L  +D   + + ++ + S F +L NL+ L +S  +
Sbjct: 374 SLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
                              +   F GL  SL+ L +     +    
Sbjct: 433 TR---------------VAFNGIFNGLS-SLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 21/198 (10%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
            L +  N L+       +     +    L  L ++ + +  ++ N      +++L   H 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 110 RINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
            +  ++  + F  L  +               L +SH          F  L  +L+ L +
Sbjct: 407 NLKQMSEFSVFLSLRNLIY-------------LDISHTHTRVAFNGIFNGLS-SLEVLKM 452

Query: 169 QENDL-EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKN 226
             N   E    +    L+NLT +DLS+ ++ ++   +F++L++L  L ++ N L  +   
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 227 SFRGLELNNNLTLYKNSF 244
            F  L     + L+ N +
Sbjct: 513 IFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 30/198 (15%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IK 139
            + N   +   +++   G+   NL +   R+         +LD   +   + FN +  + 
Sbjct: 236 EFRNEGNLEKFDKSALEGL--CNLTIEEFRLA--------YLDYYLDDIIDLFNCLTNVS 285

Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
           +  L    I  +   ++       +HL L      Q P   L+ LK L     + NK G 
Sbjct: 286 SFSLVSVTIERVKDFSYNFG---WQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGN 339

Query: 200 IPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLEL-------NNNLTLYKNSFRGLEL 249
               S   L +L  L LS N L+       S  G           N +    ++F GLE 
Sbjct: 340 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE- 396

Query: 250 SLKNLNLKNTKLKSVTPY 267
            L++L+ +++ LK ++ +
Sbjct: 397 QLEHLDFQHSNLKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 15/221 (6%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
            L +  N + +  ++   L       +    L ++ + +  I    F  I +  L L + 
Sbjct: 153 HLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 110 RIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLN 167
             + ++     + L  +            +     +   +     +A   L   T++   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHR-------LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 168 LQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDSFST-LNNLVTLKLSDNNLT-LY 224
           L   D     +  L   L N++   L    I ++ D S++    +L  +         L 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 225 KNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVT 265
             S + L   +N      S   L  SL+ L+L    L    
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKG 363

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 19/105 (18%)

Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
                 E +  ++P       KNL   DLS N +  +   SF +   L  L LS   +  
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65

Query: 224 YKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
                         T+   +++ L   L  L L    ++S+    
Sbjct: 66  --------------TIEDGAYQSLS-HLSTLILTGNPIQSLALGA 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 28/198 (14%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
            K+P +L      L ++ + +R++   +F     ++ L LS C I +I   A++ L  + 
Sbjct: 20  YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
            +              L+   I S+   AF  L  +L+ L   E +L  +    + HLK 
Sbjct: 80  TLI-------------LTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKT 125

Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE----LNNNLTLY 240
           L  ++++ N I      + FS L NL  L LS N +  +Y    R L     LN +L L 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 241 KNSFRGLELS-LKNLNLK 257
            N    ++    K + L 
Sbjct: 186 LNPMNFIQPGAFKEIRLH 203

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIFIKN----------LQLSHCRI 148
           +  L +SH          F  L ++    +  N+F   F+ +          L LS C++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
             ++P AF  L  +L+ LN+  N+   +     + L +L ++D S N I           
Sbjct: 483 EQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 209 -NNLVTLKLSDNNLT 222
            ++L  L L+ N+  
Sbjct: 542 PSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 45/260 (17%)

Query: 51  LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR 110
           L+I+   L     +   +    N    +    + +  I  + + ++N    ++L+L +C+
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK 315

Query: 111 INSITPNAF---RHLDAIRNINENTFNGIFIKNLQ---LSHCRIN--SITPNAFRHLEFT 162
                       + L    N   N F+ + + +L+   LS   ++       +      +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-S 374

Query: 163 LKHLNLQENDLEQV------------------------PVETLRHLKNLTLIDLSKNKIG 198
           LK+L+L  N +  +                               L+NL  +D+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLEL-------NNNLT-LYKNSFRGLE 248
              +  F+ L++L  LK++ N+       + F  L            L  L   +F  L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 249 LSLKNLNLKNTKLKSVTPYW 268
            SL+ LN+ +    S+  + 
Sbjct: 495 -SLQVLNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 22/198 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN 134
           L  L +  + I+++    F+G+  ++ L      + S+      HL  ++ +N   N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 135 GIFI----------KNLQLSHCRINSITPNAF---RHLEFTLKHLNLQENDLEQVPVETL 181
              +          ++L LS  +I SI          +      L+L  N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 182 RHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNN 236
           + +  L  + L  N     +       L  L   +L          L K     LE   N
Sbjct: 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 237 LTLYKNSFRGLELSLKNL 254
           LT+ +     L+  L ++
Sbjct: 257 LTIEEFRLAYLDYYLDDI 274

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 201
           Q        I  N    L F+ K+L+L  N L  +   +      L ++DLS+ +I  I 
Sbjct: 13  QCMELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 202 DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE-------LSLKN 253
           D ++ +L++L TL L+ N +  L   +F GL     L   + +   LE        +LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 254 LNLKNTKLKSVTP 266
           LN+ +  ++S   
Sbjct: 129 LNVAHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 33/211 (15%)

Query: 88  IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI-FIKNLQLSHC 146
           +     N  N        L      +I      +LD   +   + FN +  + +  L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR-------------------HLKNL 187
            I  +   ++    F  +HL L      Q P   L+                    L +L
Sbjct: 293 TIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 188 TLIDLSKNKIGKI--PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
             +DLS+N +        S     +L  L LS N +    ++F GLE   +L    ++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 246 GLE--------LSLKNLNLKNTKLKSVTPYW 268
            +          +L  L++ +T  +      
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 17/196 (8%)

Query: 73  NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRIN-SITPNAFRHLDAIRNINEN 131
              +    L ++ + +  I    F  I +  L L +   + ++     + L  +      
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR-- 231

Query: 132 TFNGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQENDLEQ-VPVETLRHLKNLTL 189
                 +     +   +     +A   L   T++   L   D      ++    L N++ 
Sbjct: 232 -----LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNNLTLYKNSFR 245
             L    I ++ D S+        L+L +        L   S + L   +N      S  
Sbjct: 287 FSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 246 GLELSLKNLNLKNTKL 261
            L  SL+ L+L    L
Sbjct: 345 DLP-SLEFLDLSRNGL 359

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 28/228 (12%)

Query: 58  LTNYPLFKATLNKHVN--TKVPLDLLYINNSAIRNINENTFNGIFIKNL--QLSHCRINS 113
           L   PL   +L+  +N    +              +  N  +   +K     L+   ++ 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT------PNAFRHLEFTLKHLN 167
           +    FR+   +   +++   G+   NL +   R+  +        + F  L   +   +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFS 288

Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227
           L    +E+V      +      ++L   K G+ P     +L  L        N      S
Sbjct: 289 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----S 342

Query: 228 FRGLELNNNLTLYKNSFRGLEL---------SLKNLNLKNTKLKSVTP 266
              L     L L +N                SLK L+L    + +++ 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 84  NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIF--- 137
            NS   N   + F  +  +  L LS C++  ++P AF  L +++  N++ N F  +    
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 138 ------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173
                 ++ L  S   I +      +H   +L  LNL +ND 
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 7e-16
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 20/189 (10%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           ++ L+  N+ I  ++ +   G   KN+ L++ +I  +          ++           
Sbjct: 101 IETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQY---------- 148

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L L    I+++          TL+HLNLQ N +  V  + +     L  +DLS NK+
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
             +    F +   +  + L +N L L + + R  +   +  L  N F     +L++   K
Sbjct: 204 AFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH--CGTLRDFFSK 260

Query: 258 NTKLKSVTP 266
           N ++++V  
Sbjct: 261 NQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 26/206 (12%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
             +  + +S+++    +       +K L LS   ++ I+         +   N++ N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 135 GIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
                     ++ L L++  +  +          +++ L+   N++ +V     +  KN+
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNISRVSCSRGQGKKNI 125

Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFR 245
               L+ NKI  + D      + +  L L  N +    +       +   +L L  N   
Sbjct: 126 ---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 246 GLEL-----SLKNLNLKNTKLKSVTP 266
            ++       LK L+L + KL  + P
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP 208

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 91  INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINS 150
           I+E   NG   K  +++   +     +  +                 +K L LS   ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-------------VKELDLSGNPLSQ 48

Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
           I+          L+ LNL  N L +     L  L  L  +DL+ N + ++         +
Sbjct: 49  ISAADLAPFT-KLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPS 100

Query: 211 LVTLKLSDNNLT-LYKNSFRGLEL----NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
           + TL  ++NN++ +  +  +G +     NN +T L           ++ L+LK  ++ +V
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTV 159

Query: 265 TP 266
             
Sbjct: 160 NF 161

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF-------RHLDAIRNIN 129
              +Y+ N+ I  + +        ++ L L    I+++             HL+   N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 130 ENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
            +    +    L+   LS  ++  +    F+     +  ++L+ N L  +  + LR  +N
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLVLIE-KALRFSQN 238

Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNN----LTLYKNSFRGLELNNNLTL 239
           L   DL  N        D FS    + T+              + +   L        
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 8e-16
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 29/178 (16%)

Query: 98  GIF--IKNLQLSHCRINSITPNAFRHLDAIRNI----NENTFNGIF-----IKNLQLSHC 146
            +      L LS   + + +         +  +     E T   +      +  L LSH 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
           ++ S+ P   + L   L  L++  N L  +P+  LR L  L  + L  N++  +P    +
Sbjct: 88  QLQSL-PLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
               L  L L++NNLT                L      GLE +L  L L+   L ++
Sbjct: 146 PTPKLEKLSLANNNLT---------------ELPAGLLNGLE-NLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
             L LSH ++ S+ P   + L A+               L +S  R+ S+   A R L  
Sbjct: 80  GTLDLSHNQLQSL-PLLGQTLPALTV-------------LDVSFNRLTSLPLGALRGLG- 124

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
            L+ L L+ N+L+ +P   L     L  + L+ N + ++P    + L NL TL L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 222 TLYKNSFRGLELNNNLTLYKN 242
                 F G  L     L+ N
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
           +  L + ++ +     +          ++    R + +T  +F  L  +           
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 137 FIKNLQLSHCRINSITPNAFRHLEF----TLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
           F           N    +    L      T++ L++ +  L          L+ +  I +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLK 252
             +K+  +P      L +L  L LS+N +                 L  ++ +G   SL+
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMV-------------EEYLKNSACKGAWPSLQ 364

Query: 253 NLNLKNTKLKSVTPY 267
            L L    L+S+   
Sbjct: 365 TLVLSQNHLRSMQKT 379

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 6e-15
 Identities = 35/192 (18%), Positives = 84/192 (43%), Gaps = 16/192 (8%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR-------NIN 129
           L +L + +S I  I  + F     +++L LS   ++S++ + F  L +++          
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 130 ENTFNGIF-----IKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
                 +F     ++ L++ +    + I    F  L   L  L ++   L     ++L+ 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKS 170

Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNS 243
           ++++  + L  ++   + +     L+++  L+L D NL  ++ S   +    +  + K +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV-DEVSSPMKKLA 229

Query: 244 FRGLELSLKNLN 255
           FRG  L+ ++ N
Sbjct: 230 FRGSVLTDESFN 241

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 43  CSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG-IFI 101
            S    ++ ++      N               V +  L+I    +       ++    +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHL 159
           K + + + ++  +  +  +HL ++  ++             LS   +       +A +  
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLD-------------LSENLMVEEYLKNSACKGA 359

Query: 160 EFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
             +L+ L L +N L  +      L  LKNLT +D+S+N    +PD S      +  L LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLS 418

Query: 218 DNNLT-LYKNSFRGLELNNNLTLYKNSFRGLEL---SLKNLNLKNTKLKSVTPYW 268
              +  +     + LE+   L +  N+     L    L+ L +   KLK++    
Sbjct: 419 STGIRVVKTCIPQTLEV---LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 23/141 (16%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKN 140
           L I+ +    + ++      ++ L LS   I  +     + L                + 
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL----------------EV 435

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
           L +S+  ++S +    R     L+ L +  N L+ +P  +L     L ++ +S+N++  +
Sbjct: 436 LDVSNNNLDSFSLFLPR-----LQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV 488

Query: 201 PDDSFSTLNNLVTLKLSDNNL 221
           PD  F  L +L  + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
                  SI           +K L+L  N +  +    LR   NL ++ L  ++I  I  
Sbjct: 12  GRSRSFTSIPSGLTA----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
           D+F +L +L  L LSDN+L+ L  + F  L     L L  N ++ L ++    NL N
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 20/189 (10%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           ++ L+  N+ I  ++ +   G   KN+ L++ +I  +          ++           
Sbjct: 101 IETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQY---------- 148

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L L    I+++          TL+HLNLQ N +  V  + +     L  +DLS NK+
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
             +    F +   +  + L +N L L + + R  +   +  L  N F     +L++   K
Sbjct: 204 AFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSK 260

Query: 258 NTKLKSVTP 266
           N ++++V  
Sbjct: 261 NQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 26/206 (12%)

Query: 78  LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
             +  + +S+++    +       +K L LS   ++ I+         +   N++ N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 135 GIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
                     ++ L L++  +  +          +++ L+   N++ +V     +  KN+
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNISRVSCSRGQGKKNI 125

Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFR 245
               L+ NKI  + D      + +  L L  N +    +       +   +L L  N   
Sbjct: 126 ---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 246 GLEL-----SLKNLNLKNTKLKSVTP 266
            ++       LK L+L + KL  + P
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 91  INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINS 150
           I+E   NG   K  +++   +     +  +                 +K L LS   ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-------------VKELDLSGNPLSQ 48

Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
           I+          L+ LNL  N L +     L  L  L  +DL+ N + ++         +
Sbjct: 49  ISAADLAPFT-KLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPS 100

Query: 211 LVTLKLSDNNLT-LYKNSFRGLEL----NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
           + TL  ++NN++ +  +  +G +     NN +T L           ++ L+LK  ++ +V
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTV 159

Query: 265 TP 266
             
Sbjct: 160 NF 161

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 18/203 (8%)

Query: 78  LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF-------RHLDAIRNIN 129
              +Y+ N+ I  + +        ++ L L    I+++             HL+   N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 130 ENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
            +    +    L+   LS  ++  +    F+     +  ++L+ N L  +  + LR  +N
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLVLIE-KALRFSQN 238

Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
           L   DL  N         F + N  V          L   +     +             
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 247 LELS----LKNLNLKNTKLKSVT 265
           L       L  L  K   L S  
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQ 321

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 10/184 (5%), Positives = 36/184 (19%), Gaps = 14/184 (7%)

Query: 78  LDLLYINNSAIRNINENTF-NGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
             +  +    ++ +                       +       L A++          
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH------ 315

Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
               L         +            + ++  +     V  +     +    ++  K  
Sbjct: 316 --ALLSGQGSETERLECERENQA--RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNL 256
           + +   +       L             +++    E  + L L +   +  E        
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHAT---EEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 257 KNTK 260
               
Sbjct: 429 VQNN 432

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
           +  S+ +I  I   AF     +               + L+  R+ ++    F+ LE +L
Sbjct: 62  INFSNNKITDIEEGAFEGASGV-------------NEILLTSNRLENVQHKMFKGLE-SL 107

Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
           K L L+ N +  V  ++   L ++ L+ L  N+I  +   +F TL++L TL L  N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
             L+L++     +           L+ +N   N +  +          +  I L+ N++ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN--------SFRGLEL 249
            +    F  L +L TL L  N +T +  +SF GL     L+LY N        +F  L  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH- 153

Query: 250 SLKNLNLKN 258
           SL  LNL  
Sbjct: 154 SLSTLNLLA 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           + L L    + +++   FR L   L  LNL  N L+ +       L  L  + L+ N++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN--------SFRGLEL 249
            +P   F  L  L  L L  N L  L    F  L     L L  N        +F  L  
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT- 155

Query: 250 SLKNLNLKNTKLKSV 264
           +L+ L+L   +L+SV
Sbjct: 156 NLQTLSLSTNQLQSV 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
           + L L    + +++   FR L  +               L L + ++ +++   F  L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLT-------------WLNLDYNQLQTLSAGVFDDLT- 83

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
            L  L L  N L  +P+    HL  L  + L  N++  +P   F  L  L  L+L+ N L
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 222 T-LYKNSFRGLELNNNLTLYKN 242
             +   +F  L     L+L  N
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 17/153 (11%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSIT---PNAFRHLDAIR--NINENTF-- 133
           L + ++ +  +++ TF G+    L   +   N +       F  L  +    +  N    
Sbjct: 40  LDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 134 --NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
              G+F     +  L L   ++ S+    F  L   LK L L  N L+ +P      L N
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
           L  + LS N++  +P  +F  L  L T+ L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 26/170 (15%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
            +L+L + +I  I  +     D +               L  SH ++  I         +
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEG-------------LGFSHNKLKYIPNIFNAKSVY 644

Query: 162 TLKHLNLQENDLEQVPVETLR-----HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
            +  ++   N +                 N + + LS N+I K P + F+T + + T+ L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 217 SDNNLT--------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
           S+N +T            +++   L   + L  N    L    +   L  
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 49  NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSH 108
           N   +  + +   P  K        +     +  + N  I  I++       ++ +  ++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFAN 457

Query: 109 CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQ------LSHCRINSITPNAFRHLEFT 162
                                +     +   NL+      L +C   +  P+    L   
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-E 516

Query: 163 LKHLNLQENDLEQVPV---------ETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLV 212
           L+ LN+  N                +       + +  +  N + + P   S   +  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 213 TLKLSDNNLT-----LYKNSFRGLELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSV 264
            L    N +              L+L+ N    + ++     +  ++ L   + KLK +
Sbjct: 577 LLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD-QVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 36/234 (15%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF--IKNLQLS 107
            LS   +  T             + ++  D+       IR   +  F      +    L 
Sbjct: 351 VLSFGTHSETVSG------RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 108 HCRINSITPNAFRHLDAIRNINENTFNGIF---------------IKNLQLSHCRINSIT 152
              IN          D+  ++ +     +                ++ +  ++       
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
                      +  N       +    +  +LK+LT ++L          D    L  L 
Sbjct: 465 I------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 213 TLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
           +L ++ N            +L  + T   +        ++   +    L+    
Sbjct: 519 SLNIACNRGISA------AQLKADWTRLADDEDTGP-KIQIFYMGYNNLEEFPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 43/235 (18%)

Query: 50  ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF-NGIFIKNLQLSH 108
            +    N + +      + +      +    + ++ + I+      F  G  I  + LS+
Sbjct: 648 SVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 109 CRINSITPNAFRHLDAIR---------NINENTFNGI----------FIKNLQLSHCRIN 149
             + SI  N+ +  D            ++  N    +          ++ N+ +S+   +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 150 SITPNAFRHLEFTLKHLNLQEND-------LEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
           S  P    +    LK   ++          L Q P   +    +L  + +  N I K+ +
Sbjct: 767 SF-PTQPLNSS-QLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDE 823

Query: 203 DSFSTLNNLVTLKLSDNNLT---------LYKNSFRGLELNNNLTLYKNSFRGLE 248
                   L  L ++DN              +     L  +    +      G+E
Sbjct: 824 ---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 16/143 (11%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           +  L L+        P+A   L   LK L+   +                 + +  K++I
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 198 -GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL------- 249
                         L    L  + +       + ++ ++ ++L       L         
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 250 ------SLKNLNLKNTKLKSVTP 266
                  L+ +   N+       
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNI 465

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 153 PNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211
            +     E  L  L ++    L+ + +  LR L  L  + + K+ +  +  D+F     L
Sbjct: 24  LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 212 VTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFR 245
             L LS N L  L   + +GL L   L L  N   
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 78  LDLLYI-NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNG 135
           L  LYI N   ++++      G+  ++NL +    +  + P+AF     +          
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS--------- 83

Query: 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173
                L LS   + S++    + L  +L+ L L  N L
Sbjct: 84  ----RLNLSFNALESLSWKTVQGL--SLQELVLSGNPL 115

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 47/248 (18%), Positives = 86/248 (34%), Gaps = 36/248 (14%)

Query: 34  ESELQSTCICSYNTANELSIQCNDLTNYP--LFKA--TLNKHVN--TKVP-----LDLLY 82
            + +Q    C  N    L++  + LT  P  L     TL    N  T +P     L  L 
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLE 87

Query: 83  INNSAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHLDAIRNINENTFNGIF-IK 139
           ++ + + ++         +  L +    +  +   P+    L    N   +       ++
Sbjct: 88  VSGNQLTSLPVLPPG---LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144

Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
            L +S  ++ S+ P     L      L    N L  +P+        L  + +S N++  
Sbjct: 145 ELSVSDNQLASL-PALPSEL----CKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS 195

Query: 200 IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS---LKNLNL 256
           +P       + L  L   +N LT       GL+    L +  N    L +    LK L +
Sbjct: 196 LPTL----PSELYKLWAYNNRLTSLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMV 248

Query: 257 KNTKLKSV 264
              +L S+
Sbjct: 249 SGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 102 KNLQLSHCRINSI--TPNAFRHLDAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
             L   + R+ S+   P+  + L    N   +       +K L +S  R+ S+ P     
Sbjct: 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL-PMLPSG 262

Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
           L      L++  N L ++P E+L HL + T ++L  N + +    +      + +     
Sbjct: 263 LL----SLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQAL---REITSAPGYS 314

Query: 219 NNLTLYKNSFRGLELNNNL 237
             +  +  +          
Sbjct: 315 GPIIRFDMAGASAPRETRA 333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 28/170 (16%)

Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
           L L++ +I  I  N     + + N             L  +H ++  I           +
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVEN-------------LSFAHNKLKYIPNIFDAKSVSVM 404

Query: 164 KHLNLQENDLEQVPV-------ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
             ++   N++  V          T     N++ I+LS N+I K P + FST + L ++ L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 217 SDNNLT--------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
             N LT            +F+   L  ++ L  N    L    +   L  
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 28/184 (15%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT-PNAFRHLE 160
           + + ++  R  S        L        +   G  I+ + + +  + +     + + ++
Sbjct: 276 QLINVACNRGISGEQ-----LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L  L    N LE            L  ++L+ N+I +IP +       +  L  + N 
Sbjct: 331 -KLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 221 LT------------------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLK 262
           L                      N    ++  N   L    F+G  +++ ++NL N ++ 
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG--INVSSINLSNNQIS 446

Query: 263 SVTP 266
               
Sbjct: 447 KFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 25/164 (15%)

Query: 83  INNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGI---- 136
           ++      ++   F GI + ++ LS+ +I+      F     +   N+  N    I    
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 137 ------------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE----- 179
                        + ++ L   ++  ++ +        L  ++L  N   + P +     
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 180 TLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 222
           TL+        D   N+   + P+   +   +L  L++  N++ 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 12/122 (9%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           +  + LS+   +   P    +   ++                    R     P       
Sbjct: 515 LVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRN-------QRDAQGNRTLREWPEGITLCP 566

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
            +L  L +  ND+ +V  +      N++++D+  N    I               L  + 
Sbjct: 567 -SLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 221 LT 222
             
Sbjct: 623 TQ 624

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 17/99 (17%)

Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK 225
           L L  N    VP + L + K+LTLIDLS N+I  + + SFS +  L+TL LS N L    
Sbjct: 36  LYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--- 91

Query: 226 NSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
                        +   +F GL+ SL+ L+L    +  V
Sbjct: 92  ------------CIPPRTFDGLK-SLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 120 RHLDAI-RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV 178
           + L  + + I  +         L L   +   + P    + +  L  ++L  N +  +  
Sbjct: 20  KGLKVLPKGIPRDV------TELYLDGNQFTLV-PKELSNYKH-LTLIDLSNNRISTLSN 71

Query: 179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNL 237
           ++  ++  L  + LS N++  IP  +F  L +L  L L  N++  + + +F  L   ++L
Sbjct: 72  QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

Query: 238 TLYKN 242
            +  N
Sbjct: 132 AIGAN 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 28/234 (11%)

Query: 44  SYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IK 102
            + T    SI    L     F+       + K  L +  + +          +     + 
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 103 NLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT 162
               +      +       +                 +L  S+  +         HL   
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPF-------------LHLDFSNNLLTDTVFENCGHLT-E 349

Query: 163 LKHLNLQENDLEQVPVET--LRHLKNLTLIDLSKNKIGKI-PDDSFSTLNNLVTLKLSDN 219
           L+ L LQ N L+++         +K+L  +D+S+N +         S   +L++L +S N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 220 NLTLYKNSFRGLELN-NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTP 266
            LT     FR L      L L+ N  + +        +L+ LN+ + +LKSV  
Sbjct: 410 ILT--DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 16/240 (6%)

Query: 35  SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINEN 94
             +    + +       +I+C    N   +  ++   + T   L  L +NN        N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI---ETTWN 235

Query: 95  TFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN 154
           +F  I  + +  +     SI+    +     R+ + +  +   +   Q+           
Sbjct: 236 SFIRIL-QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
            +      +   N   +    V +     +     +D S N +     ++   L  L TL
Sbjct: 295 IYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 215 KLSDNNLT---LYKNSFRGLELNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKS 263
            L  N L            ++    L + +NS    E         SL +LN+ +  L  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
               LN+ +N + ++    +  L  L ++ +S N+I  +    F     L  L LS N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 222 TLYKNSFRGLELNNNLTLYKNSFRGLEL--------SLKNLNLKNTKLKSV 264
              K S        +L L  N+F  L +         LK L L  T L+  
Sbjct: 82  V--KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 76  VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF--------RHLDAIR 126
            P   L  +N+ + +        +  ++ L L   ++  ++  A         + LD  +
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 127 N-INENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
           N ++ +   G     K+L   +   N +T   FR L   +K L+L  N ++ +P + +  
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-K 442

Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           L+ L  ++++ N++  +PD  F  L +L  + L  N  
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 26/177 (14%)

Query: 74  TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
             VP DL      L I+ + I  +  +       ++ L +SH RI  +  + F+    + 
Sbjct: 13  IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL- 71

Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLK 185
                       + L LSH ++  I+ +   +L    KHL+L  N  + +P+ +   ++ 
Sbjct: 72  ------------EYLDLSHNKLVKISCHPTVNL----KHLDLSFNAFDALPICKEFGNMS 115

Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242
            L  + LS   + K      + LN    + L        K    GL+  N  +L+  
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNIS-KVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           L  L +  + ++N  +       + +L+     +NS+  +A+                  
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---------CAWAES 429

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           I  L LS    N +T + FR L   +K L+L  N +  +P +    L+ L  ++++ N++
Sbjct: 430 ILVLNLSS---NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQL 485

Query: 198 GKIPDDSFSTLNNLVTLKLSDNN 220
             +PD  F  L +L  + L DN 
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 37/242 (15%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 51  LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR 110
           L    N L +  +  +           + L   N   +         G  + N+ L H  
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 111 INSITPNAFRHLDAIR-----NINENTFNGIFIK------NLQLSHCRINSITPNAFRHL 159
                          R     NI   T      +         L    I  +    F   
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 160 EF-------TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
           +         +    L  +D   + +       + T ++ ++N          STL  L 
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 213 TLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----------LSLKNLNLKNTKL 261
           TL L  N L  +       +  ++L     S   L             S+  LNL +  L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 262 KS 263
             
Sbjct: 441 TG 442

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
             K L+L +N + ++ +  +  L  L ++ LS N+I  +    F    +L  L +S N L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 222 TLYKNSFRGLELNNNLTLYKNSFRGLEL--------SLKNLNLKNTKLKSV 264
                S   +    +L L  N F  L +         L  L L   K + +
Sbjct: 113 Q--NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKN 195
              L  +              L+  L+ L LQ N L+         +++ +L  +D+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413

Query: 196 KIGKIP-DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL--------NNNLTLYKNSFRG 246
            +     D + +   +++ L LS N LT   + FR L          NN +         
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLT--GSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471

Query: 247 LELSLKNLNLKNTKLKSV 264
           L+ +L+ LN+ + +LKSV
Sbjct: 472 LQ-ALQELNVASNQLKSV 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGIF-------IKNLQLSHCRINSIT 152
           ++L +S  +++     A      ++ +N   N F G         ++ L L+  +     
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 153 PNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNN 210
           P+       TL  L+L  N     VP         L  + LS N   G++P D+   +  
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 211 LVTLKLSDNNLT 222
           L  L LS N  +
Sbjct: 345 LKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 31/210 (14%)

Query: 78  LDLLYIN-NSAIRNINENTFNGIFIKNLQLSHCRINSITPN--AFRHLDAIRNINENTFN 134
           +DL     N     ++ +  +   +++L LS+  IN           L ++ +++ N+ +
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL-DLSRNSLS 113

Query: 135 GIF-----------IKNLQLSHCRIN-SITPNAFRHLEFTLKHLNLQENDLE-QVPVE-- 179
           G             +K L +S   ++     +    L   L+ L+L  N +     V   
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWV 172

Query: 180 TLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
                  L  + +S NKI G +     S   NL  L +S NN +             +L 
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229

Query: 239 LYKNSFRG---LEL----SLKNLNLKNTKL 261
           +  N   G     +     LK LN+ + + 
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-G 198
           L+L    +    P    +++ TL+ L L  NDL  ++P   L +  NL  I LS N++ G
Sbjct: 447 LKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTG 504

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
           +IP      L NL  LKLS+N+ +
Sbjct: 505 EIPK-WIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-G 198
           +   +      I       L  T    N+           T  +  ++  +D+S N + G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
            IP     ++  L  L L  N+++
Sbjct: 647 YIP-KEIGSMPYLFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNK 196
           ++ L L +       P    +    L  L+L  N L   +P   L  L  L  + L  N 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNM 453

Query: 197 I-GKIPDDSFSTLNNLVTLKLSDNNLT 222
           + G+IP      +  L TL L  N+LT
Sbjct: 454 LEGEIPQ-ELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 163 LKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNN 220
           L  LNL  ND+   +P + +  L+ L ++DLS NK+ G+IP  + S L  L  + LS+NN
Sbjct: 658 LFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNN 715

Query: 221 LT 222
           L+
Sbjct: 716 LS 717

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           + L L   +I  + P  F  L   LK L L  N L  +PV     L  LT++DL  N++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
            +P   F  L +L  L +  N LT        L    +L L +N  +
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTF------NGIF-----IKNLQLSHCRINS 150
           + L L   +I  + P  F  L  ++ +   +        G+F     +  L L   ++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
           +    F  L   LK L +  N L ++P   +  L +LT + L +N++  IP  +F  L++
Sbjct: 103 LPSAVFDRLV-HLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 211 LVTLKLSDN 219
           L    L  N
Sbjct: 161 LTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
             L L+   +  I+ +        L  L L+ N L  +         ++  + L +NKI 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 199 KIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSF 244
           +I +  F  L+ L TL L DN +  +   SF  L    +L L  N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 17/102 (16%)

Query: 166 LNLQENDLEQVPVE-TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 224
           L L +N+L ++  +     L +L  ++L +N++  I  ++F   +++  L+L +N +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-- 91

Query: 225 KNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
                         +    F GL   LK LNL + ++  V P
Sbjct: 92  -------------EISNKMFLGLH-QLKTLNLYDNQISCVMP 119

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 41/222 (18%), Positives = 64/222 (28%), Gaps = 35/222 (15%)

Query: 80  LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI--- 136
           L  ++  A      +    + +K L +   RI S        +  I  + E T   +   
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 137 -------------FIKNLQLSHCRIN---SITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
                         +  L L +       +      + L+  LK L++ +        E 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 181 LRHLKNLTLIDLSKNKI----GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNN 235
           +R    L+ +DLS N      G I          L  L L +  +               
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 236 NLT---LYKNSFRGLEL--------SLKNLNLKNTKLKSVTP 266
            L    L  NS R             L +LNL  T LK V  
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           ++ L L +  + + +        A   +          + L LSH  +            
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQL----------QGLDLSHNSLRDAAGAPSCDWP 252

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L  LNL    L+QVP      L  L   DLS N++ + P  S   L  +  L L  N 
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNP--SPDELPQVGNLSLKGNP 307

Query: 221 LT 222
             
Sbjct: 308 FL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 34/237 (14%)

Query: 33  SESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNIN 92
           S     +  +   +   EL+++  ++T             +  + L+L  ++ +      
Sbjct: 82  SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWL 140

Query: 93  ENTFNGIF--IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIFIKNLQLSHCRI 148
                 +   +K L ++     + +    R   A+   ++++N   G            I
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------ERGLI 192

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD-SFST 207
           +++ P  F  L+  L   N        V          L  +DLS N +       S   
Sbjct: 193 SALCPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 208 LNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
            + L +L LS   L                       +GL   L  L+L   +L   
Sbjct: 252 PSQLNSLNLSFTGLK-------------------QVPKGLPAKLSVLDLSYNRLDRN 289

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
             L+L   ++ S+    F  L   L  L+L +N ++ +P      L  LT++ L +NK+ 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 199 KIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKN 242
            +P+  F  L  L  L L  N L ++    F  L     + L+ N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
             L+L   ++ S+    F  L               +  L LS  +I S+    F  L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQ-------------LTKLSLSQNQIQSLPDGVFDKLT- 76

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
            L  L L EN L+ +P      L  L  + L  N++  +PD  F  L +L  + L  N
Sbjct: 77  KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 18/104 (17%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           +   L L+ N L+ +P      L  LT + LS+N+I  +PD  F  L  L  L L +N L
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 222 T-LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
             L    F      + LT            LK L L   +LKSV
Sbjct: 89  QSLPNGVF------DKLT-----------QLKELALDTNQLKSV 115

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           I  +  ++  I S+     ++L   +  L L  N L  +  + L +LKNL  + L +NKI
Sbjct: 45  IDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKI 99

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLK 252
             +   S   L  L +L L  N ++             L L NN          L   L 
Sbjct: 100 KDL--SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT-KLD 156

Query: 253 NLNLKNTKLKSVTP 266
            L+L++ ++  + P
Sbjct: 157 TLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           L  L + ++ I +I     +   +++L L + +I  IT      L  +            
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKL------------ 155

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L L   +I+ I P     L   L++L L +N +  +    L  LKNL +++L   + 
Sbjct: 156 -DTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
              P +  S L    T+K +D +L   +      +       +       E+S       
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

Query: 258 NTKLKSVT 265
                   
Sbjct: 270 TIGKAKAR 277

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 37/186 (19%)

Query: 81  LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKN 140
             +  S+  NI E   N +    + L++  +  +T      ++   NI          K+
Sbjct: 28  GLLGQSSTANITEAQMNSL--TYITLANINVTDLTG-----IEYAHNI----------KD 70

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
           L +++    +  P     L   L+ L +   D+    +  L  L +LTL+D+S +     
Sbjct: 71  LTINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 201 PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTK 260
                +TL  + ++ LS N           +     L             LK+LN++   
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAI------TDIMPLKTLP-----------ELKSLNIQFDG 170

Query: 261 LKSVTP 266
           +     
Sbjct: 171 VHDYRG 176

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           + L L   +++ I  +A + L   L +L L  N L+ +P      L NL  + L +N++ 
Sbjct: 66  RYLALGGNKLHDI--SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLEL-------S 250
            +PD  F  L NL  L L+ N L  L K  F  L     L L  N  + L          
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182

Query: 251 LKNLNLKNTKLKSV 264
           LK+L L   +LKSV
Sbjct: 183 LKDLRLYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 31/190 (16%)

Query: 46  NTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF--IKN 103
           N+ +++    +D+ +                 +  L +  + + +I           + N
Sbjct: 41  NSIDQIIANNSDIKSVQGI--------QYLPNVRYLALGGNKLHDI------SALKELTN 86

Query: 104 LQLSHCRINSIT---PNAFRHLDAIR--NINENTF----NGIF-----IKNLQLSHCRIN 149
           L       N +       F  L  ++   + EN      +G+F     +  L L+H ++ 
Sbjct: 87  LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN 209
           S+    F  L   L  L+L  N L+ +P      L  L  + L +N++  +PD  F  L 
Sbjct: 147 SLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205

Query: 210 NLVTLKLSDN 219
           +L  + L DN
Sbjct: 206 SLQYIWLHDN 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 26/164 (15%)

Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
               +  I+    + F   D               +   L     N         L    
Sbjct: 15  QNSFYNTISGTYADYFSAWDKW-------------EKQALPGENRNEAVSLLKECLINQF 61

Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
             L L   +L  +P      +  L   ++++N +  +P+       +L  L   DN L+ 
Sbjct: 62  SELQLNRLNLSSLPDNLPPQITVL---EITQNALISLPE----LPASLEYLDACDNRLST 114

Query: 224 YKNSFRGLELNNNLTLYKNSFRGL-EL--SLKNLNLKNTKLKSV 264
                  L+   +L +  N    L EL   L+ +N  N +L  +
Sbjct: 115 LPELPASLK---HLDVDNNQLTMLPELPALLEYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 35/167 (20%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
              LQL+   ++S+  N    +                  L+++   + S+ P     LE
Sbjct: 61  FSELQLNRLNLSSLPDNLPPQI----------------TVLEITQNALISL-PELPASLE 103

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
               +L+  +N L  +P E    LK+L   D+  N++  +P+        L  +   +N 
Sbjct: 104 ----YLDACDNRLSTLP-ELPASLKHL---DVDNNQLTMLPE----LPALLEYINADNNQ 151

Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGL-EL--SLKNLNLKNTKLKSV 264
           LT+       LE    L++  N    L EL  SL+ L++    L+S+
Sbjct: 152 LTMLPELPTSLE---VLSVRNNQLTFLPELPESLEALDVSTNLLESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI--FIKNLQ---LSHCRINSITPNAF 156
           + +   + ++  + P     L+ + ++  N    +    ++L+   +S   + S+     
Sbjct: 143 EYINADNNQLTML-PELPTSLEVL-SVRNNQLTFLPELPESLEALDVSTNLLESLPAVPV 200

Query: 157 R--HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
           R  H E T      +EN +  +P E +  L     I L  N +     +S S        
Sbjct: 201 RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 215 KLSDNNLT 222
                  +
Sbjct: 260 HGPRIYFS 267

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 123 DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
           + I        N +  + L L   +I  I              ++  +N++ ++  +   
Sbjct: 7   ELIEQA-AQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFP 61

Query: 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
            L+ L  + ++ N+I +I +     L +L  L L++N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 83  INNSAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHLDAIRNINENTFNGI---- 136
           +    I        N +  + L L   +I  I          DAI + ++N    +    
Sbjct: 4   LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAI-DFSDNEIRKLDGFP 61

Query: 137 ---FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDL 192
               +K L +++ RI  I     + L   L  L L  N L ++  ++ L  LK+LT + +
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 193 SKNKIGKIPD 202
            +N +     
Sbjct: 121 LRNPVTNKKH 130

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 101 IKNLQLSHCRINSITP--------------NAFRHLDAIRNINENTFNGIFIKNLQLSHC 146
           ++ L L+  +I  I+P              N    + A++N+         ++ L L+  
Sbjct: 68  LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN-------LRELYLNED 120

Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
            I+ I+P    +L   +  LNL  N         L ++  L  + ++++K+  +     +
Sbjct: 121 NISDISP--LANLT-KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIA 174

Query: 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKL 261
            L +L +L L+ N +         L   +  T Y N    +        L +L + N K+
Sbjct: 175 NLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233

Query: 262 KSVTP 266
             ++P
Sbjct: 234 TDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 26/205 (12%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
           +  L +  +   +      N   +  L ++  ++  +TP    +L  +   ++N N    
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

Query: 136 IF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
           I        +        +I  ITP    ++   L  L +  N +  +    L +L  LT
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLS--PLANLSQLT 246

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNL--TLYK 241
            +++  N+I  I   +   L  L  L +  N ++             L LNNN       
Sbjct: 247 WLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 242 NSFRGLELSLKNLNLKNTKLKSVTP 266
               GL  +L  L L    +  + P
Sbjct: 305 EVIGGLT-NLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 21/178 (11%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-------IKNLQLSHCRINSITPN 154
             L      IN I P+A         + + +   +        I  L ++  ++ SI   
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG- 61

Query: 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
              +L   L++LNL  N +  +    L +L  LT + +  NKI  I   +   L NL  L
Sbjct: 62  -IEYLT-NLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNLTNLREL 115

Query: 215 KLSDNNLTLYKN-----SFRGLELN-NNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
            L+++N++             L L  N+     +    +   L  L +  +K+K VTP
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT-GLNYLTVTESKVKDVTP 172

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 25/186 (13%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF----IKNLQLSHCRINSIT--PNA 155
           +NL            +         N + N ++  +      N Q+      ++    + 
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 156 FRHL-EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
                +     L L+   L Q P +    L +L  + +    + ++P D+      L TL
Sbjct: 75  LEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETL 132

Query: 215 KLSDNNLTLYKNSFRGL----ELN----NNLT--------LYKNSFRGLELSLKNLNLKN 258
            L+ N L     S   L    EL+      LT           +      ++L++L L+ 
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 259 TKLKSV 264
           T ++S+
Sbjct: 193 TGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 26/154 (16%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
              L + +  +    +  F    ++++ +    +  + P+  +    +            
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGL------------ 129

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVE--------TLRHLKNLT 188
            + L L+   + ++ P +   L   L+ L+++   +L ++P            + L NL 
Sbjct: 130 -ETLTLARNPLRAL-PASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
            + L    I  +P  S + L NL +LK+ ++ L+
Sbjct: 187 SLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLS-KNK 196
           K+L++ +  ++++   A  HL   L+ L+L+    L   P         L  + L   + 
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPK-LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSN 265

Query: 197 IGKIPDDSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELNNNLTLYKNSFRGLELSL 251
           +  +P      L  L  L L    NL+   +    L  N  + +  +    L+   
Sbjct: 266 LLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 7e-08
 Identities = 36/255 (14%), Positives = 77/255 (30%), Gaps = 20/255 (7%)

Query: 27  CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNS 86
               D+             ++  E  +  +    +    AT  +    ++ ++   +  S
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366

Query: 87  AIRNINE-NTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSH 145
            + +  E           L      + ++ P  +   + ++  +                
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDL 425

Query: 146 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 205
                +  +  +     ++ L+L   DL  +    L  L  +T +DLS N++  +P  + 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PAL 482

Query: 206 STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT---LYKNSFRGLEL--------SLKNL 254
           + L  L  L+ SDN L     +  G+     L    L  N  +             L  L
Sbjct: 483 AALRCLEVLQASDNALE----NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 255 NLKNTKLKSVTPYWR 269
           NL+   L        
Sbjct: 539 NLQGNSLCQEEGIQE 553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           ++ L L +C+ N             L+ L+L    L  V    L  L  L  ++LS+N+I
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKN 242
               D     L NL  L LS N L         + LE   +L L+  
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 20/126 (15%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           LD    N+  I  +     N   ++ L L +  + S+                N      
Sbjct: 31  LDNCKSNDGKIEGLTAEFVN---LEFLSLINVGLISV---------------SNLPKLPK 72

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNK 196
           +K L+LS  RI          L   L HLNL  N L+ +  +E L+ L+ L  +DL   +
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 197 IGKIPD 202
           +  + D
Sbjct: 132 VTNLND 137

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           +K L L + R N             L+ L+     L  +    L  L  L  ++LS N++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKN 242
               +       NL  L LS N +         + LE   +L L+  
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           +K L L + R N            +  + +       ++ L   +  + SI       L 
Sbjct: 19  VKELVLDNSRSNEGK---------LEGLTDEFEE---LEFLSTINVGLTSIAN--LPKLN 64

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDN 219
             LK L L +N +            NLT ++LS NKI  +   +    L NL +L L + 
Sbjct: 65  -KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 220 NLTLYKN 226
            +T   +
Sbjct: 124 EVTNLND 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIR--NINENTF----NGIF-----IKNLQLSHCRINS 150
             L L    + S+    F  L ++    +  N      NG+F     +  L LS  ++ S
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
           +    F  L   LK L L  N L+ +P      L  L  + L +N++  +PD  F  L +
Sbjct: 91  LPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 211 LVTLKLSDN 219
           L  + L DN
Sbjct: 150 LQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
              +L+L+ N L+ +P      L +LT + L  NK+  +P+  F+ L +L  L LS N L
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 222 T-LYKNSFRGLELNNNLTLYKNSFRGLEL-------SLKNLNLKNTKLKSV 264
             L    F  L     L L  N  + L          LK+L L   +LKSV
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           ++L  ++ +I+ ITP     L   L  L+L  N L+ +   TL  L NLT +DL+ N+I 
Sbjct: 202 ESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS 256

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKN 253
            +     S L  L  LKL  N ++       GL    NL L +N    +       +L  
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313

Query: 254 LNLKNTKLKSVTP 266
           L L    +  ++P
Sbjct: 314 LTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 29/171 (16%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           +  LQ     I SI      +L+              +  +  S+ ++  ITP   ++L 
Sbjct: 48  VTTLQADRLGIKSIDG--VEYLNN-------------LTQINFSNNQLTDITP--LKNLT 90

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             L  + +  N +  +    L +L NLT + L  N+I  I       L NL  L+LS N 
Sbjct: 91  -KLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNT 145

Query: 221 LTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
           ++         S + L   N +T  K     L  +L+ L++ + K+  ++ 
Sbjct: 146 ISDISALSGLTSLQQLSFGNQVTDLKP-LANLT-TLERLDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
                L    +          L+  +  L      ++ +  + + +L NLT I+ S N++
Sbjct: 26  KMKTVLGKTNVTDTVS--QTDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 80

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLK 252
             I       L  LV + +++N +         L     LTL+ N    ++      +L 
Sbjct: 81  TDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137

Query: 253 NLNLKNTKLKSVTP 266
            L L +  +  ++ 
Sbjct: 138 RLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 27/203 (13%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
           L  L + N+ I N+         +  L+L   +I++I+P     L A+    +NEN    
Sbjct: 245 LTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 136 I-------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
           I        +  L L    I+ I+P     L   L+ L    N +  V   +L +L N+ 
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDVS--SLANLTNIN 356

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG-------LELNNNLTLYK 241
            +    N+I  +     + L  +  L L+D   T    +++        ++      +  
Sbjct: 357 WLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 242 NSFRGLELSLKNLNLKNTKLKSV 264
            +      S    ++        
Sbjct: 415 ATISDGG-SYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 24/179 (13%)

Query: 102 KNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGI-------FIKNLQLSHCRINSIT 152
           ++L  ++ +I+ ITP     L  +   ++N N    I        + +L L++ +I+++ 
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259

Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
           P     L   L  L L  N +  +    L  L  LT ++L++N++  I     S L NL 
Sbjct: 260 P--LSGLT-KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISNLKNLT 312

Query: 213 TLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
            L L  NN++           + L   NN     +S   L  ++  L+  + ++  +TP
Sbjct: 313 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLT-NINWLSAGHNQISDLTP 370

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 123 DAIRNI-NENTFNGIFIKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQVPVE 179
           DAIR      +      + ++L H  I  I         L+   KHL L  N++E++   
Sbjct: 9   DAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKI--S 64

Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
           +L  ++NL ++ L +N I KI ++  +  + L  L +S N +     S  G+E   NL 
Sbjct: 65  SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA----SLSGIEKLVNLR 118

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           + L L   +I  + P  F  L   L  L+L  N L  +P      L  LT + L+ N++ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
            IP  +F  L +L  + L +N
Sbjct: 92  SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
           T + L L +N + ++       L  LT +DL  N++  +P   F  L  L  L L+DN L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
                L    +  +     + L   +++ N   ++++ +    ++   NL  + LS N+I
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELS-GVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNNLTLYKNSFRGLELSLKN 253
             +       L  L  L ++ N L     +       L L+NN     +S   L+ +L+ 
Sbjct: 76  SDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK-NLEI 132

Query: 254 LNLKNTKLKSVTP 266
           L+++N KLKS+  
Sbjct: 133 LSIRNNKLKSIVM 145

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
           + L L++ +I  + P  F HL   L+ L    N L  +P      L  LT +DL+ N + 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
            IP  +F  L +L  + L +N
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
             + L L  N + ++      HL NL  +  + NK+  IP   F  L  L  L L+DN+L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 43/292 (14%), Positives = 90/292 (30%), Gaps = 94/292 (32%)

Query: 6   SPFHLVTLILLTALIQGGSAQC-PWEDESESELQSTCICSYNTANELSIQCNDLTNY-PL 63
           +P  L    ++   I+ G A    W+  +  +L         T  E S+   +   Y  +
Sbjct: 326 NPRRLS---IIAESIRDGLATWDNWKHVNCDKL--------TTIIESSLNVLEPAEYRKM 374

Query: 64  FK--ATLNKHVNTKVPLDLLYI------------------NNSAI-RNINENTFNGIFIK 102
           F   +      +  +P  LL +                    S + +   E+T   I I 
Sbjct: 375 FDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIP 429

Query: 103 NLQLS-----------HCRI------------NSITPNAF---------RHLDAIRNINE 130
           ++ L            H  I            + + P             HL  I +   
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 131 -NTFNGIF---------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
              F  +F         I++   +     SI  N  + L+F   ++   +   E++ V  
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERL-VNA 547

Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 232
           +       L  + +N I        S   +L+ + L   +  +++ + + ++
Sbjct: 548 ILDF----LPKIEENLI-------CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
           I  L      + +I       +  + N          +  L+L   +I  + P   ++L 
Sbjct: 43  ITTLSAFGTGVTTIEG-----VQYLNN----------LIGLELKDNQITDLAP--LKNLT 85

Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
             +  L L  N L+   V  +  L+++  +DL+  +I  +     + L+NL  L L  N 
Sbjct: 86  -KITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266
           +T       GL     L++       L        L  L   + K+  ++P
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              +      +          L+  +  L+     +  +  E +++L NL  ++L  N+I
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLK 252
             +       L  +  L+LS N L          S + L+L +          GL  +L+
Sbjct: 76  TDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS-NLQ 132

Query: 253 NLNLKNTKLKSVTP 266
            L L   ++ +++P
Sbjct: 133 VLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
           +  L ++ + ++N+         IK L L+  +I  +TP     L  ++   ++ N    
Sbjct: 87  ITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN 143

Query: 136 IF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
           I        ++ L + + +++ +TP    +L   L  L   +N +  +    L  L NL 
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTP--LANLS-KLTTLKADDNKISDIS--PLASLPNLI 198

Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL 239
            + L  N+I  +     +  +NL  + L++  +T     +    +  N+  
Sbjct: 199 EVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
             +   +  +  +           L+ +    N LE++P   L++L  LT I    N + 
Sbjct: 198 TAIYADNNSLKKLPDLPLS-----LESIVAGNNILEELP--ELQNLPFLTTIYADNNLLK 250

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
            +PD       +L  L + DN LT      + L   +      +    L  +L  LN  +
Sbjct: 251 TLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306

Query: 259 TKLKSVTPYW 268
            +++S+    
Sbjct: 307 NEIRSLCDLP 316

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 18/179 (10%)

Query: 91  INENTFNGIFIKNLQLSHCRINSITPNAF-----RHLDAIRNINENTFNGIFIKNLQLSH 145
           IN    +  F++        +  +   A             +  E        +  +++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 146 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 205
            R+                 L L    L  +P        +L  +  S N + ++P +  
Sbjct: 63  SRLRDCLDR-------QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELP 110

Query: 206 STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
            +L +L+    +   L+        L ++NN        +     LK +++ N  LK +
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 42/213 (19%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           L  +Y +N+ ++ + +   +   ++ L +    +  + P   + L  + +++EN F+G+ 
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDL-PELPQSLTFL-DVSENIFSGLS 293

Query: 138 -----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
                +  L  S   I S+           L+ LN+  N L ++P         L  +  
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPS-----LEELNVSNNKLIELPAL----PPRLERLIA 344

Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE---LNNNLTLYKNSFRGLEL 249
           S N + ++P        NL  L +  N L  + +    +E   +N++L       + L+ 
Sbjct: 345 SFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400

Query: 250 ----------------SLKNLNLKNTKLKSVTP 266
                           S+++L + + ++     
Sbjct: 401 LHVETNPLREFPDIPESVEDLRMNSERVVDPYE 433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 26/175 (14%)

Query: 103 NLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----------IFIKNLQLSHCRIN 149
                +     +  +       + N++                    ++  L +    IN
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--IN 87

Query: 150 SIT---PNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDS 204
           ++    P A   L   L +L +   ++   +P + L  +K L  +D S N + G +P  S
Sbjct: 88  NLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPP-S 144

Query: 205 FSTLNNLVTLKLSDNNLT-LYKNSFRGL-ELNNNLTLYKNSFRG-LELSLKNLNL 256
            S+L NLV +    N ++    +S+    +L  ++T+ +N   G +  +  NLNL
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNK 196
             ++ +S  R+    P  F +L   L  ++L  N LE           KN   I L+KN 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNS 232

Query: 197 I-GKIPDDSFSTLNNLVTLKLSDNNLT 222
           +   +         NL  L L +N + 
Sbjct: 233 LAFDLG--KVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-G 198
           + LS   +       F   +   + ++L +N L   +    +   KNL  +DL  N+I G
Sbjct: 202 VDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG 258

Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
            +P    + L  L +L +S NNL 
Sbjct: 259 TLPQ-GLTQLKFLHSLNVSFNNLC 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
           I  +  ++  I S+     ++L   +  L L  N L  +  + L +LKNL  + L +NK+
Sbjct: 48  IDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKV 102

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT---LYKNSFRGLE-----L 249
             +   S   L  L +L L  N ++       GL     L    L  N    +       
Sbjct: 103 KDL--SSLKDLKKLKSLSLEHNGIS----DINGLVHLPQLESLYLGNNKITDITVLSRLT 156

Query: 250 SLKNLNLKNTKLKSVTP 266
            L  L+L++ ++  + P
Sbjct: 157 KLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
                L    +          L  ++  +    +D++ V  + +++L N+T + L+ NK+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 80

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLK 252
             I     + L NL  L L +N +    +  + L+   +L+L  N    +        L+
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 253 NLNLKNTKLKSVTP 266
           +L L N K+  +T 
Sbjct: 138 SLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 26/171 (15%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
           L  L + ++ I +I     +   +++L L + +I  IT      L  +  +         
Sbjct: 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV-----LSRLTKL--------- 158

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L L   +I+ I P     L   L++L L +N +  +    L  LKNL +++L   + 
Sbjct: 159 -DTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 212

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNS 243
              P +  S L    T+K +D +L   +       +    +  +L  + N 
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 16/171 (9%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFI---KNLQLSHCRINSITPNAFR 157
           +  L  +   I ++  +   +L  +   + N    + +     L   +C  N +T     
Sbjct: 66  LTKLICTSNNITTLDLSQNTNLTYL-ACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS 124

Query: 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
                L +LN   N L ++    + H   LT +D   NK     D   +    L TL  S
Sbjct: 125 QNP-LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 218 DNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS----LKNLNLKNTKLKSV 264
            N +T  +      +L N L    N+   L+L+    L  L+  + KL  +
Sbjct: 179 FNKIT--ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.53
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.52

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=216.03  Aligned_cols=220  Identities=27%  Similarity=0.394  Sum_probs=182.2

Q ss_pred             cccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc
Q psy10547         35 SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS  113 (269)
Q Consensus        35 ~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~  113 (269)
                      ..||..|.|...   ...+.|. ..++..+|..++..      ++.|++++|.+..++...|.... |++|++++|.++.
T Consensus        33 ~~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~~~------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~  102 (440)
T 3zyj_A           33 QTCPSVCSCSNQ---FSKVICV-RKNLREVPDGISTN------TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT  102 (440)
T ss_dssp             CCCCSSSEECTT---SCEEECC-SCCCSSCCSCCCTT------CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE
T ss_pred             ccCCCCCEeCCC---CCEEEeC-CCCcCcCCCCCCCC------CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc
Confidence            346688999743   2579998 45666666666543      59999999999999988888776 9999999999999


Q ss_pred             cCcccccCCccccccc--cccc--------cc-ccccEEEcCCCCCCccChhHHhhccccccEEEccC-CCCCccChhhh
Q psy10547        114 ITPNAFRHLDAIRNIN--ENTF--------NG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETL  181 (269)
Q Consensus       114 ~~~~~~~~l~~L~~l~--~~~~--------~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~  181 (269)
                      +.+.+|.++++|++|+  .|.+        .+ .+|++|++++|.++.+.+..|..++ +|++|++++ +.+..+++..|
T Consensus       103 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~  181 (440)
T 3zyj_A          103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAF  181 (440)
T ss_dssp             ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTT
T ss_pred             cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc-ccCEeCCCCCCCcceeCcchh
Confidence            9999999999888765  2222        22 2789999999999998888888888 899999998 56777887788


Q ss_pred             cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccce
Q psy10547        182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKN  253 (269)
Q Consensus       182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~  253 (269)
                      ..+++|+.|++++|.++.++.  +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++       ++|++
T Consensus       182 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             TTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             hcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            899999999999999998874  78889999999999999875 678999999999999999887653       48999


Q ss_pred             eecCCCCCCCCCCC
Q psy10547        254 LNLKNTKLKSVTPY  267 (269)
Q Consensus       254 L~l~~n~l~~~p~~  267 (269)
                      |+|++|+|+.+|+.
T Consensus       260 L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          260 INLAHNNLTLLPHD  273 (440)
T ss_dssp             EECTTSCCCCCCTT
T ss_pred             EECCCCCCCccChh
Confidence            99999999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.4e-28  Score=203.08  Aligned_cols=217  Identities=24%  Similarity=0.428  Sum_probs=155.5

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT  115 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~  115 (269)
                      ||..|.|....  ...+.|. ..++..+|..++.      .++.|++++|.+..++.+.|.... |++|++++|.++++.
T Consensus         2 CP~~C~C~~~~--~~~~~c~-~~~l~~ip~~~~~------~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~   72 (285)
T 1ozn_A            2 CPGACVCYNEP--KVTTSCP-QQGLQAVPVGIPA------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID   72 (285)
T ss_dssp             CCTTCEEECSS--SCEEECC-SSCCSSCCTTCCT------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cCCCceECCCC--CeEEEcC-cCCcccCCcCCCC------CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC
Confidence            55789997532  2568998 4555655555544      469999999999999998887776 999999999999999


Q ss_pred             cccccCCcccccccc--cc-ccc---------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcC
Q psy10547        116 PNAFRHLDAIRNINE--NT-FNG---------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH  183 (269)
Q Consensus       116 ~~~~~~l~~L~~l~~--~~-~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~  183 (269)
                      +.+|..+++|++|+.  +. +..         .+|++|++++|.++++.+..|..++ +|++|++++|+++.+++..|..
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~  151 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRD  151 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhcc
Confidence            999999997775542  21 111         1667777777777777666666666 7777777777777776666667


Q ss_pred             CCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceee
Q psy10547        184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLN  255 (269)
Q Consensus       184 l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~  255 (269)
                      +++|+.|++++|.++.+++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+++++       ++|++|+
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            77777777777777776666666777777777777777654 566777777777777777666654       3677777


Q ss_pred             cCCCCCCC
Q psy10547        256 LKNTKLKS  263 (269)
Q Consensus       256 l~~n~l~~  263 (269)
                      +++|++..
T Consensus       232 l~~N~~~c  239 (285)
T 1ozn_A          232 LNDNPWVC  239 (285)
T ss_dssp             CCSSCEEC
T ss_pred             ccCCCccC
Confidence            77776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.4e-28  Score=213.63  Aligned_cols=219  Identities=26%  Similarity=0.380  Sum_probs=180.3

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||..|.|...   ...+.|. ..++..+|..++.      .++.|++++|.+..++.+.|.... |+.|++++|.++++
T Consensus        45 ~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  114 (452)
T 3zyi_A           45 NCPSVCSCSNQ---FSKVVCT-RRGLSEVPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI  114 (452)
T ss_dssp             CCCTTSEECSS---SCEEECC-SSCCSSCCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCEECCC---CcEEEEC-CCCcCccCCCCCC------CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc
Confidence            46688999753   2578998 4556666655554      359999999999999988888776 99999999999999


Q ss_pred             CcccccCCccccccc--ccc--------ccc-ccccEEEcCCCCCCccChhHHhhccccccEEEccC-CCCCccChhhhc
Q psy10547        115 TPNAFRHLDAIRNIN--ENT--------FNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETLR  182 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~~  182 (269)
                      .+.+|.++++|++|+  .|.        |.+ .+|++|++++|.++.+.+..|..++ +|++|++++ +.+..++...|.
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~  193 (452)
T 3zyi_A          115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFE  193 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTT
T ss_pred             ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-cccEEeCCCCCCccccChhhcc
Confidence            999999999888665  222        222 2788999999999988888888888 899999988 567778777888


Q ss_pred             CCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------ccccee
Q psy10547        183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNL  254 (269)
Q Consensus       183 ~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L  254 (269)
                      .+++|+.|++++|.++.++.  +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++       ++|++|
T Consensus       194 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             TCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            89999999999999988863  77888999999999999875 678999999999999999887653       489999


Q ss_pred             ecCCCCCCCCCCC
Q psy10547        255 NLKNTKLKSVTPY  267 (269)
Q Consensus       255 ~l~~n~l~~~p~~  267 (269)
                      ++++|+|+.+|+.
T Consensus       272 ~L~~N~l~~~~~~  284 (452)
T 3zyi_A          272 NLAHNNLSSLPHD  284 (452)
T ss_dssp             ECCSSCCSCCCTT
T ss_pred             ECCCCcCCccChH
Confidence            9999999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-27  Score=198.58  Aligned_cols=210  Identities=21%  Similarity=0.412  Sum_probs=180.2

Q ss_pred             CCCCCCCcccccccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-cc
Q psy10547         24 SAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IK  102 (269)
Q Consensus        24 ~~~cp~~~~~~~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~  102 (269)
                      .+.|+|.+..       |.|...   ...+.|. ...+..+|..++.      .++.|++++|.+..++...|.... |+
T Consensus         2 ~~~C~~~~~~-------C~c~~~---~~~l~~~-~~~l~~ip~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~   64 (270)
T 2o6q_A            2 EALCKKDGGV-------CSCNNN---KNSVDCS-SKKLTAIPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLR   64 (270)
T ss_dssp             CCCBGGGTCS-------BEEETT---TTEEECT-TSCCSSCCSCCCT------TCSEEECCSSCCSCCCTTSSSSCTTCC
T ss_pred             CccCCCCCCC-------CEeCCC---CCEEEcc-CCCCCccCCCCCC------CCCEEECcCCCCCeeCHHHhcCCCCCC
Confidence            4678887666       999742   2578887 4445555444443      469999999999999998887776 99


Q ss_pred             EEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc
Q psy10547        103 NLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR  182 (269)
Q Consensus       103 ~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~  182 (269)
                      +|++++|.++.+.+..|..++             +|++|++++|.++.+.+..|..++ +|++|++++|.++.+++..|.
T Consensus        65 ~L~l~~n~l~~i~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~  130 (270)
T 2o6q_A           65 LLYLNDNKLQTLPAGIFKELK-------------NLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFD  130 (270)
T ss_dssp             EEECCSSCCSCCCTTTTSSCT-------------TCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTT
T ss_pred             EEECCCCccCeeChhhhcCCC-------------CCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhC
Confidence            999999999999888899999             888999999999999888888898 999999999999999988899


Q ss_pred             CCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc-------ccccee
Q psy10547        183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE-------LSLKNL  254 (269)
Q Consensus       183 ~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L  254 (269)
                      .+++|++|++++|.++.+++..|..+++|+.|++++|.++.++. .+..+++|+.|++++|.+++++       ++|+.|
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            99999999999999999998888999999999999999998765 5888999999999999888765       478999


Q ss_pred             ecCCCCCCCC
Q psy10547        255 NLKNTKLKSV  264 (269)
Q Consensus       255 ~l~~n~l~~~  264 (269)
                      ++++|++..-
T Consensus       211 ~l~~N~~~c~  220 (270)
T 2o6q_A          211 QLQENPWDCT  220 (270)
T ss_dssp             ECCSSCBCCS
T ss_pred             EecCCCeeCC
Confidence            9999998653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.95  E-value=4.3e-28  Score=197.39  Aligned_cols=203  Identities=20%  Similarity=0.366  Sum_probs=172.1

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-Cccc
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSI  114 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~  114 (269)
                      ||..|.|...  ....|.|.+++.+|.    ++.      .++.|++++|.+..++...|.... |++|++++|+ ++.+
T Consensus         4 cp~~C~C~~~--~~~~v~c~~l~~ip~----~~~------~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i   71 (239)
T 2xwt_C            4 SSPPCECHQE--EDFRVTCKDIQRIPS----LPP------STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL   71 (239)
T ss_dssp             CSSSCSEEEC--STTEEEECSCSSCCC----CCT------TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE
T ss_pred             CCCCCeeCCC--CcceeEccCccccCC----CCC------cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee
Confidence            4467999751  236789997666664    333      469999999999999998888776 9999999997 9999


Q ss_pred             CcccccCCcccccccccccccccccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC---EE
Q psy10547        115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT---LI  190 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L  190 (269)
                      .+.+|.+++             +|++|++++ |.++.+.+..|.+++ +|++|++++|++++++.  |..+++|+   +|
T Consensus        72 ~~~~f~~l~-------------~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L  135 (239)
T 2xwt_C           72 ESHSFYNLS-------------KVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPD--LTKVYSTDIFFIL  135 (239)
T ss_dssp             CTTTEESCT-------------TCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCC--CTTCCBCCSEEEE
T ss_pred             CHhHcCCCc-------------CCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCccccc--cccccccccccEE
Confidence            998999999             788899998 999999888888888 89999999999999775  88888888   99


Q ss_pred             eccCC-CCCCCCCCcccCCCCCC-EEEcCCCccccccccccCcCCCceeeeccCc-ccccc--------cccceeecCCC
Q psy10547        191 DLSKN-KIGKIPDDSFSTLNNLV-TLKLSDNNLTLYKNSFRGLELNNNLTLYKNS-FRGLE--------LSLKNLNLKNT  259 (269)
Q Consensus       191 ~l~~n-~i~~i~~~~~~~l~~L~-~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~-~~~l~--------~~L~~L~l~~n  259 (269)
                      ++++| .++.+++..|..+++|+ .|++++|.++.+|......++|+.|++++|+ +++++        ++|++|++++|
T Consensus       136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence            99999 99999988899999999 9999999999888765555889999999994 76653        37899999999


Q ss_pred             CCCCCCCC
Q psy10547        260 KLKSVTPY  267 (269)
Q Consensus       260 ~l~~~p~~  267 (269)
                      +++.+|+.
T Consensus       216 ~l~~l~~~  223 (239)
T 2xwt_C          216 SVTALPSK  223 (239)
T ss_dssp             CCCCCCCT
T ss_pred             ccccCChh
Confidence            99998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1e-27  Score=202.10  Aligned_cols=217  Identities=18%  Similarity=0.283  Sum_probs=158.8

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT  115 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~  115 (269)
                      ||..|.|.|     ..+.|. ..++..+|..++.      .++.|++++|.+..++.+.|.... |++|++++|.++.+.
T Consensus         1 CP~~C~C~~-----~~l~c~-~~~l~~ip~~~~~------~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~   68 (306)
T 2z66_A            1 CPSRCSCSG-----TEIRCN-SKGLTSVPTGIPS------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG   68 (306)
T ss_dssp             CCTTCEEET-----TEEECC-SSCCSSCCSCCCT------TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred             CcCCCeeCC-----CEEEcC-CCCcccCCCCCCC------CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence            568899998     579998 4455555554443      469999999999999999887766 999999999988653


Q ss_pred             --cccccCCcccccccc--cccc--------cccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCCccChhhhc
Q psy10547        116 --PNAFRHLDAIRNINE--NTFN--------GIFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVPVETLR  182 (269)
Q Consensus       116 --~~~~~~l~~L~~l~~--~~~~--------~~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~  182 (269)
                        +..+..+++|++|+.  +.+.        ..+|++|++++|.++++.+ ..+..++ +|++|++++|.+....+..+.
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~  147 (306)
T 2z66_A           69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFN  147 (306)
T ss_dssp             EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTT
T ss_pred             CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhcc-CCCEEECCCCcCCccchhhcc
Confidence              456666777776652  2221        1267888888888777765 5677777 788888888888777777777


Q ss_pred             CCCCCCEEeccCCCCCC-CCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccce
Q psy10547        183 HLKNLTLIDLSKNKIGK-IPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKN  253 (269)
Q Consensus       183 ~l~~L~~L~l~~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~  253 (269)
                      .+++|+.|++++|.++. ..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++       ++|++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            77888888888887765 3334677777888888888877765 556777778888888887776543       36777


Q ss_pred             eecCCCCCCCCCC
Q psy10547        254 LNLKNTKLKSVTP  266 (269)
Q Consensus       254 L~l~~n~l~~~p~  266 (269)
                      |++++|++++.++
T Consensus       228 L~L~~N~l~~~~~  240 (306)
T 2z66_A          228 LDYSLNHIMTSKK  240 (306)
T ss_dssp             EECTTSCCCBCSS
T ss_pred             eECCCCCCcccCH
Confidence            8888887776544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=4.1e-26  Score=194.27  Aligned_cols=194  Identities=23%  Similarity=0.373  Sum_probs=137.8

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||..|.|.+     ..+.|. ..++..+|..++.      .++.|++++|.+..++...|.... |++|++++|.++++
T Consensus        24 ~cp~~c~c~l-----~~l~~~-~~~l~~lp~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (330)
T 1xku_A           24 VCPFRCQCHL-----RVVQCS-DLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI   91 (330)
T ss_dssp             CCCTTCEEET-----TEEECT-TSCCCSCCCSCCT------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             CCCCCCcCCC-----eEEEec-CCCccccCccCCC------CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee
Confidence            4557799987     568898 3444444444443      469999999999999998887766 99999999999999


Q ss_pred             CcccccCCccccccc--cccccc------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc--cChhhhcCC
Q psy10547        115 TPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHL  184 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l  184 (269)
                      .|.+|..+++|++|+  .+.+..      .+|++|++++|.++.+.+..|..+. +|++|++++|.+..  ..+..+..+
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCC
Confidence            999999999999775  333332      3789999999999999888888888 89999999988864  555667777


Q ss_pred             CCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCccc
Q psy10547        185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFR  245 (269)
Q Consensus       185 ~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~  245 (269)
                      ++|+.|++++|.++.++...+   ++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            777777777776666554221   3444555555444433 334444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=3.8e-26  Score=194.72  Aligned_cols=218  Identities=21%  Similarity=0.330  Sum_probs=155.0

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||.+|.|.+     ..+.|. ..++..+|..++      ..++.|++++|.+..++++.|.... |++|++++|+++++
T Consensus        26 ~cp~~c~c~l-----~~l~~~-~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   93 (332)
T 2ft3_A           26 MCPFGCHCHL-----RVVQCS-DLGLKAVPKEIS------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI   93 (332)
T ss_dssp             CCCSSCEEET-----TEEECC-SSCCSSCCSCCC------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCcccC-----CEEECC-CCCccccCCCCC------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence            4667799987     568887 344444444443      3469999999999999988887776 99999999999999


Q ss_pred             CcccccCCccccccc--cccccc------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc--cChhhhcCC
Q psy10547        115 TPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHL  184 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l  184 (269)
                      .+.+|..+++|++|+  .+.+..      .+|++|++++|.++.+.+..|..++ +|++|++++|.++.  ..+..+..+
T Consensus        94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           94 HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             CGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             CHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC
Confidence            999999999999765  333332      3789999999999988888888888 88888888888753  333444333


Q ss_pred             --------------------CCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCc
Q psy10547        185 --------------------KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNS  243 (269)
Q Consensus       185 --------------------~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~  243 (269)
                                          ++|+.|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence                                345555555555555555556666666666666666665443 56666666667776666


Q ss_pred             ccccc------cccceeecCCCCCCCCCC
Q psy10547        244 FRGLE------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       244 ~~~l~------~~L~~L~l~~n~l~~~p~  266 (269)
                      ++.+|      ++|++|++++|+|+.+|+
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccCh
Confidence            66554      356667777776666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=205.36  Aligned_cols=219  Identities=23%  Similarity=0.436  Sum_probs=168.3

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||..|.|...   +..+.|. ..++..+|..++..      ++.|++++|.+..++...|.... |++|++++|.++++
T Consensus         2 ~Cp~~C~C~~~---~~~v~c~-~~~l~~ip~~~~~~------l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~   71 (477)
T 2id5_A            2 GCPPRCECSAQ---DRAVLCH-RKRFVAVPEGIPTE------TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV   71 (477)
T ss_dssp             CCSTTCEEETT---TTEEECC-SCCCSSCCSCCCTT------CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccCCCeECCC---CCEEEeC-CCCcCcCCCCCCCC------CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe
Confidence            46688999753   2579998 45566665555543      59999999999999988888776 99999999999999


Q ss_pred             CcccccCCccccccc--ccc--------ccc-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcC
Q psy10547        115 TPNAFRHLDAIRNIN--ENT--------FNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH  183 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~  183 (269)
                      .+.+|.++++|++|+  .+.        |.+ .+|++|++++|.++.+.+..|..+. +|++|++++|.+..+.+..|..
T Consensus        72 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A           72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTT
T ss_pred             ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccC
Confidence            999999999888665  222        222 2788888888888888888888888 8888888888888888778888


Q ss_pred             CCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccCcCCCceeeeccCcccc-cc------cccceee
Q psy10547        184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYKNSFRG-LE------LSLKNLN  255 (269)
Q Consensus       184 l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~  255 (269)
                      +++|+.|++++|.++.+++..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.+ ++      .+|++|+
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            888888888888888888777888888888888888887654 367777777777777664432 21      2566666


Q ss_pred             cCCCCCCCCC
Q psy10547        256 LKNTKLKSVT  265 (269)
Q Consensus       256 l~~n~l~~~p  265 (269)
                      +++|+++.+|
T Consensus       231 l~~n~l~~~~  240 (477)
T 2id5_A          231 ITHCNLTAVP  240 (477)
T ss_dssp             EESSCCCSCC
T ss_pred             CcCCcccccC
Confidence            6666666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=197.81  Aligned_cols=203  Identities=22%  Similarity=0.328  Sum_probs=172.3

Q ss_pred             CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547         39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN  117 (269)
Q Consensus        39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~  117 (269)
                      +.|.|.|..    ...|. ..++..+|..++.      .++.|++++|.+..++.+.|.... |++|++++|+++++.+.
T Consensus        26 ~~~~C~~~~----~c~~~-~~~l~~iP~~~~~------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (353)
T 2z80_A           26 ASLSCDRNG----ICKGS-SGSLNSIPSGLTE------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED   94 (353)
T ss_dssp             -CCEECTTS----EEECC-STTCSSCCTTCCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCCCCe----EeeCC-CCCcccccccccc------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh
Confidence            346666532    23444 3344444444443      469999999999999998887776 99999999999999999


Q ss_pred             cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCC-
Q psy10547        118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKN-  195 (269)
Q Consensus       118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-  195 (269)
                      +|.+++             +|++|++++|.++++.+..|..++ +|++|++++|+++.++. ..+..+++|++|++++| 
T Consensus        95 ~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           95 SFSSLG-------------SLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTTTCT-------------TCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             hcCCCC-------------CCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            999999             889999999999999988899998 99999999999999887 67899999999999999 


Q ss_pred             CCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547        196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~  266 (269)
                      .++.+++..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..++       ++|++|++++|+++++++
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence            58888877899999999999999999875 788999999999999999987754       589999999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=7.4e-26  Score=187.99  Aligned_cols=204  Identities=27%  Similarity=0.394  Sum_probs=149.5

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA  118 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~  118 (269)
                      +|.|....   ..+.|.+ .++..+|..+|.      .++.|++++|.+..++...|.... |++|++++|.++++.+.+
T Consensus         2 ~C~~~~~~---~~~~c~~-~~l~~ip~~l~~------~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (276)
T 2z62_A            2 PCVEVVPN---ITYQCME-LNFYKIPDNLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA   71 (276)
T ss_dssp             CSEEEETT---TEEECTT-SCCSSCCSSSCT------TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT
T ss_pred             CceeccCC---ceEEecC-CCccccCCCCCC------CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH
Confidence            47776533   5799984 445555555554      369999999999999988887766 999999999999999889


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG  198 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  198 (269)
                      |..++             +|++|++++|.++++.+..|.++. +|++|++++|.+.++++..+..+++|++|++++|.++
T Consensus        72 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A           72 YQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             TTTCT-------------TCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             ccCCc-------------CCCEEECCCCccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence            99999             677777777777777777777777 7777777777777776666777777777777777776


Q ss_pred             CCC-CCcccCCCCCCEEEcCCCcccccc-ccccCcCCCc----eeeeccCcccccc------cccceeecCCCCCCCCCC
Q psy10547        199 KIP-DDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       199 ~i~-~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~  266 (269)
                      .+. +..+..+++|+.|++++|.++.++ ..+..+..++    .+++++|.+.+++      .+|++|++++|+++.+|+
T Consensus       138 ~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred             eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence            643 346777777777777777777653 3555555555    6667777666654      256677777777776665


Q ss_pred             C
Q psy10547        267 Y  267 (269)
Q Consensus       267 ~  267 (269)
                      .
T Consensus       218 ~  218 (276)
T 2z62_A          218 G  218 (276)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=7.6e-26  Score=185.50  Aligned_cols=184  Identities=24%  Similarity=0.446  Sum_probs=162.4

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA  118 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~  118 (269)
                      +|.|...   ...+.|. ..++..+|..++.      .++.|++++|.+..++...|.... |++|++++|.++++.+..
T Consensus         9 gC~C~~~---~~~l~~~-~~~l~~~p~~~~~------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   78 (251)
T 3m19_A            9 GCTCNEG---KKEVDCQ-GKSLDSVPSGIPA------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV   78 (251)
T ss_dssp             SSEEEGG---GTEEECT-TCCCSSCCSCCCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ceEcCCC---CeEEecC-CCCccccCCCCCC------CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence            4999532   2568888 4555555555554      469999999999999998888776 999999999999999988


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG  198 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  198 (269)
                      |..++             +|++|++++|.++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++|.++
T Consensus        79 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           79 FDDLT-------------ELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTTCT-------------TCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hccCC-------------cCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            99999             889999999999999999999998 9999999999999999988999999999999999999


Q ss_pred             CCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCccccc
Q psy10547        199 KIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGL  247 (269)
Q Consensus       199 ~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l  247 (269)
                      .+++..|..+++|+.|++++|+++.++. .+..+++|+.|++++|.+..-
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9998889999999999999999998765 788999999999999999764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.7e-26  Score=181.50  Aligned_cols=180  Identities=22%  Similarity=0.384  Sum_probs=134.3

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT  115 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~  115 (269)
                      ||..|.|.|     ..+.|. ..++..++..++.      .++.|++++|.+..++.+.|.... |++|++++|+++++.
T Consensus         1 Cp~~C~C~~-----~~v~c~-~~~l~~~p~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (208)
T 2o6s_A            1 CPSRCSCSG-----TTVECY-SQGRTSVPTGIPA------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP   68 (208)
T ss_dssp             CCTTCEEET-----TEEECC-SSCCSSCCSCCCT------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CcCCCEECC-----CEEEec-CCCccCCCCCCCC------CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence            568899998     679998 4444444444333      358888888888888877776655 888888888888777


Q ss_pred             cccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCC
Q psy10547        116 PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN  195 (269)
Q Consensus       116 ~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  195 (269)
                      +..|..++             +|++|++++|.++.+.+..|..++ +|++|++++|+++++++..|..+++|+.|++++|
T Consensus        69 ~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           69 NGVFNKLT-------------SLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             TTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hhhcCCCC-------------CcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            77777777             677788888888877777777777 7888888888888877777777888888888888


Q ss_pred             CCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc-cc
Q psy10547        196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG-LE  248 (269)
Q Consensus       196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~-l~  248 (269)
                      .++.+++..+..+++|+.|++++|.+.      +.++.++.|+++.|.+++ +|
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          135 QLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBB
T ss_pred             ccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceee
Confidence            888777766777788888888888664      334567777777777764 44

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=3.2e-24  Score=190.07  Aligned_cols=225  Identities=26%  Similarity=0.374  Sum_probs=136.2

Q ss_pred             cCCcceeecCCCCceEEEecC--CCCCchhhh--------------hhhhccCCCCcccEEEecCCCcc-ccCcCCCCCC
Q psy10547         37 LQSTCICSYNTANELSIQCND--LTNYPLFKA--------------TLNKHVNTKVPLDLLYINNSAIR-NINENTFNGI   99 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~--~~~~~~~~~--------------~l~~~~~~~~~l~~l~l~~~~i~-~l~~~~~~~~   99 (269)
                      |+..|.|..     ..+.|.+  ++.+|..+.              ..+..+.....|++|++++|.+. .++.+.|...
T Consensus         4 ~~~~c~~~~-----~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l   78 (455)
T 3v47_A            4 GTSECSVIG-----YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL   78 (455)
T ss_dssp             ---CCEEET-----TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred             ccceeEEEc-----cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence            446788875     4577763  333433221              11344556666777777777764 6666666665


Q ss_pred             c-ccEEEecCCCCcccCcccccCCccccccc--cccccc-----------ccccEEEcCCCCCCccChhH-Hhhcccccc
Q psy10547        100 F-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----------IFIKNLQLSHCRINSITPNA-FRHLEFTLK  164 (269)
Q Consensus       100 ~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----------~~L~~L~l~~n~i~~~~~~~-~~~l~~~L~  164 (269)
                      . |++|++++|.++++.|..|.++++|++|+  .+.+.+           .+|++|++++|.++++.|.. |..++ +|+
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~  157 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFH  157 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCC
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-ccc
Confidence            5 88888888888888777788787777654  222221           25666666666666665543 45554 555


Q ss_pred             EEEccCCCCCcc--------------------------------------------------------------------
Q psy10547        165 HLNLQENDLEQV--------------------------------------------------------------------  176 (269)
Q Consensus       165 ~L~l~~n~l~~~--------------------------------------------------------------------  176 (269)
                      +|++++|++++.                                                                    
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  237 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA  237 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence            555555544433                                                                    


Q ss_pred             -----------------------------------------------------ChhhhcCCCCCCEEeccCCCCCCCCCC
Q psy10547        177 -----------------------------------------------------PVETLRHLKNLTLIDLSKNKIGKIPDD  203 (269)
Q Consensus       177 -----------------------------------------------------~~~~~~~l~~L~~L~l~~n~i~~i~~~  203 (269)
                                                                           .+..+..+++|+.|++++|.++.+++.
T Consensus       238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  317 (455)
T 3v47_A          238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN  317 (455)
T ss_dssp             TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence                                                                 223344555666666666666666555


Q ss_pred             cccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        204 SFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       204 ~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      .|..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.+++       ++|++|++++|+++++|+.
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence            666666666666666666654 445666667777777776665542       3677777777777776664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.9e-24  Score=179.02  Aligned_cols=174  Identities=26%  Similarity=0.424  Sum_probs=159.6

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      .+.++++++.+..+|....  ..+++|++++|+++.+.+.+|..++             +|++|++++|.++.+.+..|.
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~i~~~~~~   82 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-------------KLRLLYLNDNKLQTLPAGIFK   82 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-------------TCCEEECCSSCCSCCCTTTTS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-------------CCCEEECCCCccCeeChhhhc
Confidence            3789999999999998765  3489999999999999988999999             889999999999999988888


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCce
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNN  236 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~  236 (269)
                      .++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.+|. .+..+++|+.
T Consensus        83 ~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           83 ELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            898 99999999999999999889999999999999999999998889999999999999999998776 4889999999


Q ss_pred             eeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       237 l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      |++++|.+++++       ++|++|++++|+++.+|+.
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            999999887754       4899999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.92  E-value=3.6e-25  Score=190.07  Aligned_cols=205  Identities=21%  Similarity=0.295  Sum_probs=121.3

Q ss_pred             cCCc-ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc-
Q psy10547         37 LQST-CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS-  113 (269)
Q Consensus        37 ~~~~-C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~-  113 (269)
                      ||.+ |.|.+     .+|.|. ..++.++|..+|.      +++.|++++|.|..++.+.|.++. |++|++++|++.+ 
T Consensus         2 Cp~~~C~C~~-----~~v~C~-~~~Lt~iP~~l~~------~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~   69 (350)
T 4ay9_X            2 CHHRICHCSN-----RVFLCQ-ESKVTEIPSDLPR------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV   69 (350)
T ss_dssp             CCCSSSEEET-----TEEEEE-STTCCSCCTTCCT------TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred             CCCCccEeeC-----CEEEec-CCCCCccCcCcCC------CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc
Confidence            4454 99987     579998 3445555555554      359999999999999999998876 9999999999855 


Q ss_pred             cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEecc
Q psy10547        114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS  193 (269)
Q Consensus       114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  193 (269)
                      +.+.+|.+++++.+            .+.+.+|.++.+.+..|..++ +|++|++++|++..+++..+....++..+++.
T Consensus        70 i~~~~f~~L~~l~~------------~l~~~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~  136 (350)
T 4ay9_X           70 IEADVFSNLPKLHE------------IRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ  136 (350)
T ss_dssp             ECTTSBCSCTTCCE------------EEEEEETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred             cChhHhhcchhhhh------------hhcccCCcccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhc
Confidence            66778998885432            234444555555555555555 55555555555555544444444444445543


Q ss_pred             C-CCCCCCCCCcccCCC-CCCEEEcCCCccccccccccCcCCCceeeecc-Ccccccc-------cccceeecCCCCCCC
Q psy10547        194 K-NKIGKIPDDSFSTLN-NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK-NSFRGLE-------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       194 ~-n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~-n~~~~l~-------~~L~~L~l~~n~l~~  263 (269)
                      + +.+..++...|..+. .++.|++++|+|+.++.......+++.+++.+ |.++.+|       ++|++||+++|+|+.
T Consensus       137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             cccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            3 344444444444442 34455555555555444444444455554432 3333332       245555555555555


Q ss_pred             CCC
Q psy10547        264 VTP  266 (269)
Q Consensus       264 ~p~  266 (269)
                      +|+
T Consensus       217 lp~  219 (350)
T 4ay9_X          217 LPS  219 (350)
T ss_dssp             CCS
T ss_pred             cCh
Confidence            544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.92  E-value=1.8e-24  Score=173.85  Aligned_cols=161  Identities=24%  Similarity=0.445  Sum_probs=139.0

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      .||..|.|.+     ..+.|. ..++..+|..++.      .++.|++++|.+..++...|..+. |+.|++++|+++++
T Consensus         4 ~CP~~C~C~~-----~~v~c~-~~~l~~iP~~l~~------~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~   71 (220)
T 2v9t_B            4 HCPAACTCSN-----NIVDCR-GKGLTEIPTNLPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL   71 (220)
T ss_dssp             CSCTTSEEET-----TEEECT-TSCCSSCCSSCCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCEECC-----CEEEcC-CCCcCcCCCccCc------CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence            4557899987     579998 4455555555543      369999999999999998888776 99999999999999


Q ss_pred             CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547        115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK  194 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  194 (269)
                      .+.+|.+++             +|++|++++|.++.+++..|.++. +|++|++++|+++++++..|..+++|+.|++++
T Consensus        72 ~~~~~~~l~-------------~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           72 APDAFQGLR-------------SLNSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             CTTTTTTCS-------------SCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CHHHhhCCc-------------CCCEEECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence            999999998             888899999999999888888888 999999999999999888899999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        195 NKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       195 n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      |.++.+++..|..+++|+.|++++|.+.
T Consensus       138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          138 NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9999998888888999999999999885

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4.2e-24  Score=178.82  Aligned_cols=198  Identities=24%  Similarity=0.327  Sum_probs=152.1

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA  118 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~  118 (269)
                      .|.|.. -.....+.|. ..++..+|..++.      .++.|++++|.+..++...|.... |++|++++|.++++.+. 
T Consensus         3 ~C~~~~-l~~l~~l~~~-~~~l~~ip~~~~~------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   73 (290)
T 1p9a_G            3 ICEVSK-VASHLEVNCD-KRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-   73 (290)
T ss_dssp             SSEEEC-STTCCEEECT-TSCCSSCCSCCCT------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred             cccccc-cCCccEEECC-CCCCCcCCCCCCC------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence            366652 2334678888 4555555544443      469999999999999888887776 99999999999988553 


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG  198 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  198 (269)
                       ..++             +|++|++++|.++.++ ..+..++ +|++|++++|+++.+++..|..+++|+.|++++|+++
T Consensus        74 -~~l~-------------~L~~L~Ls~N~l~~l~-~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           74 -GTLP-------------VLGTLDLSHNQLQSLP-LLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             -SCCT-------------TCCEEECCSSCCSSCC-CCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             -CCCC-------------cCCEEECCCCcCCcCc-hhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence             5677             6778888888887664 4566777 7888888888888888777888888888888888888


Q ss_pred             CCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547        199 KIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       199 ~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      .++++.|..+++|+.|++++|+++.+|. .+..+++|+.|++++|+++.+|      .+|+.|++++|++.
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            8887777788888888888888887765 4567888888888888888776      35778888888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=6e-24  Score=174.15  Aligned_cols=172  Identities=20%  Similarity=0.343  Sum_probs=158.7

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      .+.++++++.+..+|....  ..++.|++++|.+.++.+.+|..++             +|++|++++|.++++.+..|.
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-------------KLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-------------TCCEEECTTSCCCCCCTTTTT
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-------------cCCEEECCCCcCCccCHhHhc
Confidence            3789999999999998775  3589999999999999999999999             889999999999999999999


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCce
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNN  236 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~  236 (269)
                      .+. +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.++. .+..+++|+.
T Consensus        81 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           81 DLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            999 99999999999999999999999999999999999999999888999999999999999998876 6999999999


Q ss_pred             eeeccCcccccc-------cccceeecCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       237 l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p  265 (269)
                      |++++|.+.+++       ++|++|++++|++..-+
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            999999988865       47999999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=5.1e-25  Score=189.24  Aligned_cols=161  Identities=17%  Similarity=0.265  Sum_probs=106.4

Q ss_pred             ccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCC
Q psy10547         71 HVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN  149 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~  149 (269)
                      .+.....|+.|++++|.+..++.+.|.... |++|++++|+++++.+..|..++             +|++|++++|.++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~  137 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-------------SLTFLNLLGNPYK  137 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-------------TCSEEECTTCCCS
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-------------cCCEEECCCCCCc
Confidence            456778899999999999999988887766 99999999999999888899999             5555666666655


Q ss_pred             ccCh-hHHhhccccccEEEccCC-CCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547        150 SITP-NAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS  227 (269)
Q Consensus       150 ~~~~-~~~~~l~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~  227 (269)
                      .++. ..|..++ +|++|++++| .+..+++..|..+++|+.|++++|.++.+.+..+..+++|++|++++|.++.+|..
T Consensus       138 ~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  216 (353)
T 2z80_A          138 TLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI  216 (353)
T ss_dssp             SSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred             ccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh
Confidence            5544 3455555 5666666665 35555555555556666666666655555444555555555555555555544432


Q ss_pred             -ccCcCCCceeeeccCccc
Q psy10547        228 -FRGLELNNNLTLYKNSFR  245 (269)
Q Consensus       228 -~~~l~~L~~l~l~~n~~~  245 (269)
                       +..+++|+.|++++|.++
T Consensus       217 ~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          217 FVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             HHHHTTTEEEEEEESCBCT
T ss_pred             hhhhcccccEEECCCCccc
Confidence             223455555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.92  E-value=1.7e-24  Score=186.69  Aligned_cols=183  Identities=23%  Similarity=0.383  Sum_probs=156.4

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCC-CCc-ccEEEecCCCCccc
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFN-GIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~-~~~-L~~L~l~~n~l~~~  114 (269)
                      ||..|.|.+     ..+.|. ..++..+|..++..      ++.|++++|.+..++.+.|. ... |++|++++|+++++
T Consensus        12 Cp~~C~C~~-----~~l~c~-~~~l~~iP~~~~~~------l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i   79 (361)
T 2xot_A           12 CPANCLCAS-----NILSCS-KQQLPNVPQSLPSY------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI   79 (361)
T ss_dssp             CCTTCEEET-----TEEECC-SSCCSSCCSSCCTT------CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE
T ss_pred             CCCCCEECC-----CEEEeC-CCCcCccCccCCCC------CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc
Confidence            337799986     468998 44555555555543      58999999999999999885 554 99999999999999


Q ss_pred             CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547        115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK  194 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  194 (269)
                      .+.+|..++             +|++|++++|.++.+.+..|..+. +|++|++++|+++.+.+..|..+++|+.|++++
T Consensus        80 ~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           80 SSEAFVPVP-------------NLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             CTTTTTTCT-------------TCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ChhhccCCC-------------CCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence            999999999             888999999999999998999998 999999999999999989999999999999999


Q ss_pred             CCCCCCCCCcc---cCCCCCCEEEcCCCcccccc-ccccCcCC--CceeeeccCccc
Q psy10547        195 NKIGKIPDDSF---STLNNLVTLKLSDNNLTLYK-NSFRGLEL--NNNLTLYKNSFR  245 (269)
Q Consensus       195 n~i~~i~~~~~---~~l~~L~~L~L~~n~l~~~p-~~~~~l~~--L~~l~l~~n~~~  245 (269)
                      |.++.++...|   ..+++|+.|+|++|.|+.+| ..+..++.  ++.|++++|.+.
T Consensus       146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999998777   56899999999999999877 45777776  478999998775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3.4e-24  Score=196.46  Aligned_cols=185  Identities=20%  Similarity=0.287  Sum_probs=124.0

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT  115 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~  115 (269)
                      |+..|.|....   ..+.|. ..++..+|..+|..      ++.|++++|.+..+++..|.... |++|++++|++.++.
T Consensus         4 ~~~~C~~~~~~---~~~~c~-~~~l~~iP~~l~~~------l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~   73 (606)
T 3t6q_A            4 SDQKCIEKEVN---KTYNCE-NLGLNEIPGTLPNS------TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH   73 (606)
T ss_dssp             --CCCEEEETT---TEEECT-TSCCSSCCTTSCTT------CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC
T ss_pred             ccCceecccCC---ceEECC-CCCcccCcCCCCCc------CcEEEccCCccCcCChhHhccCccceEEECCCCccceeC
Confidence            44679997533   479998 55666666667664      49999999999999888888776 999999999999999


Q ss_pred             cccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCC
Q psy10547        116 PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN  195 (269)
Q Consensus       116 ~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  195 (269)
                      |.+|.+++             +|++|++++|.++++.|..|.++. +|++|++++|.++++.+..+..+++|++|++++|
T Consensus        74 ~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n  139 (606)
T 3t6q_A           74 EDTFQSQH-------------RLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN  139 (606)
T ss_dssp             TTTTTTCT-------------TCCEEECTTCCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred             hhhccCcc-------------ccCeeeCCCCcccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCC
Confidence            99999999             555566666666666565666665 6666666666666655555566666666666666


Q ss_pred             CCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCc--eeeeccCccc
Q psy10547        196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN--NLTLYKNSFR  245 (269)
Q Consensus       196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~--~l~l~~n~~~  245 (269)
                      .++.++...+..+++|+.|++++|.++.+ +..+..+++|+  .+++++|.+.
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            66554332344455666666666666543 33455555555  4455554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=7e-24  Score=176.86  Aligned_cols=192  Identities=23%  Similarity=0.406  Sum_probs=163.0

Q ss_pred             hccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-CcccCcccccCCccccccc--ccc--------ccc-c
Q psy10547         70 KHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSITPNAFRHLDAIRNIN--ENT--------FNG-I  136 (269)
Q Consensus        70 ~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~--~~~--------~~~-~  136 (269)
                      ..+.....|+.|++++|.+..+....|.... |++|++++|. +..+.+..|..+++|++|+  .+.        +.+ .
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  129 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence            3455677899999999999999888777766 9999999997 8888888899999998765  222        222 2


Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      +|++|++++|.++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++|.++.+.+..+..+++|+.|++
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence            899999999999999988899998 9999999999999999888999999999999999999987778999999999999


Q ss_pred             CCCccccccc-cccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547        217 SDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       217 ~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      ++|.++.++. .+..+++|+.|++++|++..-.      ..++.+..+.+.+.
T Consensus       209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~  261 (285)
T 1ozn_A          209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP  261 (285)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred             CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccc
Confidence            9999998764 6899999999999999987521      34555666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.91  E-value=7.1e-24  Score=170.45  Aligned_cols=161  Identities=22%  Similarity=0.401  Sum_probs=130.5

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccC-cCCCCCCc-ccEEEecCCCCcc
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNIN-ENTFNGIF-IKNLQLSHCRINS  113 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~-~~~~~~~~-L~~L~l~~n~l~~  113 (269)
                      .||..|.|.+     ..+.|. ...+..+|..++..      ++.|++++|.+..++ .+.|.... |++|++++|++++
T Consensus         4 ~CP~~C~C~~-----~~l~~s-~n~l~~iP~~~~~~------~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~   71 (220)
T 2v70_A            4 ACPEKCRCEG-----TTVDCS-NQKLNKIPEHIPQY------TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD   71 (220)
T ss_dssp             CCCTTCEEET-----TEEECC-SSCCSSCCSCCCTT------CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCCCEECC-----CEeEeC-CCCcccCccCCCCC------CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE
Confidence            4558899987     578887 33444444444443      478999999988884 45565555 8999999999998


Q ss_pred             cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEecc
Q psy10547        114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS  193 (269)
Q Consensus       114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  193 (269)
                      +.+.+|.+++             +|++|++++|.++++.+..|..++ +|++|++++|+++++++..|..+++|+.|+++
T Consensus        72 i~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           72 IEEGAFEGAS-------------GVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             ECTTTTTTCT-------------TCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             ECHHHhCCCC-------------CCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            8888888888             788899999999988888888888 89999999999998888888888999999999


Q ss_pred             CCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       194 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +|.++.+++..|..+++|+.|++++|.+.
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99998887778888889999999988886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=3.2e-24  Score=181.43  Aligned_cols=198  Identities=19%  Similarity=0.274  Sum_probs=140.5

Q ss_pred             hhhhccCCCCcccEEEecC-CCcc-ccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------
Q psy10547         67 TLNKHVNTKVPLDLLYINN-SAIR-NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------  135 (269)
Q Consensus        67 ~l~~~~~~~~~l~~l~l~~-~~i~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------  135 (269)
                      .+|..+.....|+.|++++ |.+. .+|........|++|++++|.+++..|..|..+++|++|+  .|.+.+       
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            3455566677789999984 7766 4444443344499999999999988888888888887654  333331       


Q ss_pred             --ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCE
Q psy10547        136 --IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT  213 (269)
Q Consensus       136 --~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~  213 (269)
                        .+|++|++++|.+++..|..+..+.++|++|++++|++++..+..+..+. |+.|++++|.++...+..+..+++|+.
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence              26778888888887666667766644678888888877766666677666 777888777777666667777777888


Q ss_pred             EEcCCCccccccccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCC
Q psy10547        214 LKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       214 L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p  265 (269)
                      |++++|.++..++.+..+++|++|++++|.+.+ +|      ++|++|++++|++++..
T Consensus       226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             EECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            888888777655557777778888888877763 22      46777888888777433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=3.3e-24  Score=181.33  Aligned_cols=207  Identities=18%  Similarity=0.251  Sum_probs=163.9

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccc---cCcCCCCCCcccEEEecC-CCCcccC
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN---INENTFNGIFIKNLQLSH-CRINSIT  115 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~---l~~~~~~~~~L~~L~l~~-n~l~~~~  115 (269)
                      .|.|.|     .+|.|....              ....++.|+++++.+..   ++........|++|++++ |.+.+..
T Consensus        33 ~C~~~w-----~gv~C~~~~--------------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~   93 (313)
T 1ogq_A           33 CCNRTW-----LGVLCDTDT--------------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI   93 (313)
T ss_dssp             TTTTCS-----TTEEECCSS--------------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC
T ss_pred             CCcCCC-----cceEeCCCC--------------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC
Confidence            465557     679997321              11246899999999984   665554445599999995 9999988


Q ss_pred             cccccCCccccccc--cccccc---------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCC
Q psy10547        116 PNAFRHLDAIRNIN--ENTFNG---------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL  184 (269)
Q Consensus       116 ~~~~~~l~~L~~l~--~~~~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l  184 (269)
                      |..|..+++|++|+  .+.+.+         .+|++|++++|.+++..|..|..++ +|++|++++|++++..+..+..+
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhh
Confidence            99999999998765  333331         2789999999999988888888888 89999999999986666678888


Q ss_pred             C-CCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCcCCCceeeeccCcccccc------cccceeec
Q psy10547        185 K-NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNL  256 (269)
Q Consensus       185 ~-~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l  256 (269)
                      + +|+.|++++|.++...+..+..++ |+.|++++|.++. .|..+..+++|+.|++++|.+++.+      ++|++|++
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L  251 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence            7 899999999998755555777776 9999999999984 6778899999999999999887532      58999999


Q ss_pred             CCCCCCC-CCCC
Q psy10547        257 KNTKLKS-VTPY  267 (269)
Q Consensus       257 ~~n~l~~-~p~~  267 (269)
                      ++|++++ +|..
T Consensus       252 s~N~l~~~~p~~  263 (313)
T 1ogq_A          252 RNNRIYGTLPQG  263 (313)
T ss_dssp             CSSCCEECCCGG
T ss_pred             cCCcccCcCChH
Confidence            9999984 5543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=7.4e-25  Score=185.24  Aligned_cols=175  Identities=17%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             CCcccEEEecCCCcc-ccCcCCC-CCCc-ccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEEcCCC
Q psy10547         75 KVPLDLLYINNSAIR-NINENTF-NGIF-IKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQLSHC  146 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~-~l~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~l~~n  146 (269)
                      ...|+.|++++|.+. .+|...| .... |++|++++|+++++ |..+..+     +             +|++|++++|
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-------------~L~~L~L~~N  159 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-------------GLKVLSIAQA  159 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-------------TCCEEEEESC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-------------CCcEEEeeCC
Confidence            455666777777666 3444443 3333 67777777777666 5555554     5             4444555555


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccC--hhhh--cCCCCCCEEeccCCCCCCCC---CCcccCCCCCCEEEcCCC
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVP--VETL--RHLKNLTLIDLSKNKIGKIP---DDSFSTLNNLVTLKLSDN  219 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~n~i~~i~---~~~~~~l~~L~~L~L~~n  219 (269)
                      .++++.+..|..++ +|++|++++|++.+..  +..+  ..+++|++|++++|.++.++   ...+..+++|+.|++++|
T Consensus       160 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          160 HSLNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             SCCCCCTTTCCCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             CCccchHHHhccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            55544444444444 4555555555443310  1111  34444444444444444221   122233444444444444


Q ss_pred             cccccc--ccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCC
Q psy10547        220 NLTLYK--NSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       220 ~l~~~p--~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~  264 (269)
                      .++..+  ..+..+++|+.|++++|.++.+|    ++|++||+++|+|+++
T Consensus       239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred             cCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC
Confidence            444322  23333444444444444444433    2344444444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=1.5e-23  Score=192.37  Aligned_cols=198  Identities=26%  Similarity=0.381  Sum_probs=162.7

Q ss_pred             CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547         39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN  117 (269)
Q Consensus        39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~  117 (269)
                      .+|.|....   .++.|. ..++..+|..+|..+      +.|++++|.|..+++..|..+. |++|++++|+|+++.+.
T Consensus        25 ~~c~~~~~~---~~~~c~-~~~l~~vP~~lp~~~------~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~   94 (635)
T 4g8a_A           25 EPCVEVVPN---ITYQCM-ELNFYKIPDNLPFST------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG   94 (635)
T ss_dssp             CCSEEEETT---TEEECT-TSCCSSCCSSSCTTC------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCccccCCC---CEEECC-CCCcCccCCCCCcCC------CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence            457776433   578998 455666666777654      9999999999999999998876 99999999999999999


Q ss_pred             cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC
Q psy10547        118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI  197 (269)
Q Consensus       118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  197 (269)
                      +|.+++             +|++|+|++|.++.+++..|.++. +|++|++++|+++++++..|+.+++|++|++++|.+
T Consensus        95 ~f~~L~-------------~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A           95 AYQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             TTTTCT-------------TCCEEECTTCCCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             HhcCCC-------------CCCEEEccCCcCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            999999             889999999999999999999999 999999999999999988899999999999999999


Q ss_pred             CCCC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCCc----eeeeccCcccccc------cccceeecCCCC
Q psy10547        198 GKIP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTK  260 (269)
Q Consensus       198 ~~i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~  260 (269)
                      +.+. +..+..+++|++|++++|.++.+ +..+..+..++    .++++.|.+..++      ..+..+++++|.
T Consensus       161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~  235 (635)
T 4g8a_A          161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF  235 (635)
T ss_dssp             CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred             ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence            7653 45778899999999999999875 45666554433    5677777776654      234556666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4.5e-23  Score=172.57  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=158.1

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ....++.++++++.+..+|.+.+  ..++.|++++|.++++.+..|..++             +|++|++++|.++.+.+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~   72 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-------------RLTQLNLDRAELTKLQV   72 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT-------------TCCEEECTTSCCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCC-------------CCCEEECCCCccCcccC
Confidence            45567999999999999998876  3479999999999999999999999             88999999999999865


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLE  232 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~  232 (269)
                      .  ..++ +|++|++++|+++.++. .+..+++|++|++++|+++.++++.|..+++|+.|++++|+++.+|. .+..++
T Consensus        73 ~--~~l~-~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           73 D--GTLP-VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             C--SCCT-TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             C--CCCC-cCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence            3  5677 99999999999998874 57889999999999999999998899999999999999999998765 578899


Q ss_pred             CCceeeeccCcccccc-------cccceeecCCCCCCCCCCCC
Q psy10547        233 LNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      +|+.|++++|+++++|       ++|++|++++|+|+.+|+.+
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence            9999999999998865       58999999999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.3e-23  Score=172.71  Aligned_cols=180  Identities=24%  Similarity=0.309  Sum_probs=152.4

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ....|+.|++++|.+..++ .......|++|++++|.++++.+..|..++             +|++|++++|.++++.+
T Consensus        61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT-------------NLKELVLVENQLQSLPD  126 (272)
T ss_dssp             GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------TCCEEECTTSCCCCCCT
T ss_pred             cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCc-------------CCCEEECCCCcCCccCH
Confidence            4566899999999888764 222333499999999999988888888888             78889999999999988


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLE  232 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~  232 (269)
                      ..|..++ +|++|++++|+++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.++.+++ .+..++
T Consensus       127 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          127 GVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             HHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence            8888888 89999999999999988888899999999999999999988788889999999999999987654 578899


Q ss_pred             CCceeeeccCcccccccccceeecCCCCCCC-CCCCC
Q psy10547        233 LNNNLTLYKNSFRGLELSLKNLNLKNTKLKS-VTPYW  268 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~~~L~~L~l~~n~l~~-~p~~~  268 (269)
                      +|+.|++++|.+.+-.++++.+++..|.+.+ +|.++
T Consensus       206 ~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcc
Confidence            9999999999998755589999999888885 55544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=180.83  Aligned_cols=197  Identities=28%  Similarity=0.418  Sum_probs=144.1

Q ss_pred             hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547         69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I  136 (269)
Q Consensus        69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~  136 (269)
                      +..+.....|+.|++++|.+..+.+..|.... |++|++++|+++.+.+..|.++++|++|+  .|.+.+         .
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            34555677788899988888888777777665 88888888888888887888888888665  222222         2


Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      +|+.|++++|.++.+.+..|..+. +|++|++++|+++.+++..+..+++|+.|++++|.+..+++..|..+++|+.|++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCC-CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            788889999988888888888888 8899999888888888888888888888888888888777766776666666666


Q ss_pred             CCC------------------------cccccc-ccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCC
Q psy10547        217 SDN------------------------NLTLYK-NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       217 ~~n------------------------~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~  264 (269)
                      ++|                        .++.+| ..+..+++|+.|++++|.+.+++       ++|++|++++|+++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred             CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence            554                        444444 24555666666666666555432       3566666666666665


Q ss_pred             CC
Q psy10547        265 TP  266 (269)
Q Consensus       265 p~  266 (269)
                      ++
T Consensus       288 ~~  289 (477)
T 2id5_A          288 EP  289 (477)
T ss_dssp             CT
T ss_pred             CH
Confidence            43

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=4.7e-23  Score=188.87  Aligned_cols=198  Identities=23%  Similarity=0.344  Sum_probs=169.9

Q ss_pred             ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccc
Q psy10547         41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF  119 (269)
Q Consensus        41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~  119 (269)
                      |.|....   ..+.|. ..++..+|..++..      ++.|++++|.+..++...|.... |++|++++|.++++.+.+|
T Consensus         7 c~~~~~~---~~~~c~-~~~l~~ip~~~~~~------l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~   76 (606)
T 3vq2_A            7 CIEVVPN---ITYQCM-DQKLSKVPDDIPSS------TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW   76 (606)
T ss_dssp             CEEEETT---TEEECT-TSCCSSCCTTSCTT------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             ceecCCC---CceEcc-CCCcccCCCCCCCC------cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh
Confidence            6664322   579998 55666666666543      59999999999999998888776 9999999999999999999


Q ss_pred             cCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCC
Q psy10547        120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK  199 (269)
Q Consensus       120 ~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  199 (269)
                      .+++             +|++|++++|.++++.|..|.++. +|++|++++|.++++++..+..+++|++|++++|.++.
T Consensus        77 ~~l~-------------~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A           77 HGLH-------------HLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             TTCT-------------TCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred             hchh-------------hcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc
Confidence            9999             889999999999999999999999 99999999999999988889999999999999999976


Q ss_pred             CC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCCc----eeeeccCcccccc------cccceeecCCCCCC
Q psy10547        200 IP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       200 i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      +. +..+.++++|++|++++|.++.+ +..+..+.+|+    .+++++|.+.+++      .+|++|++++|.+.
T Consensus       143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS  217 (606)
T ss_dssp             CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred             eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence            32 45799999999999999999975 55677776655    7999999998865      37899999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=5.2e-23  Score=191.01  Aligned_cols=157  Identities=22%  Similarity=0.373  Sum_probs=101.0

Q ss_pred             ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccc
Q psy10547         41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF  119 (269)
Q Consensus        41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~  119 (269)
                      |.|.+     ..+.|. ..++..+|..+|.      .++.|++++|.+..++...|.... |++|++++|.++++.+.+|
T Consensus         2 C~~~~-----~~~~cs-~~~L~~ip~~~~~------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   69 (680)
T 1ziw_A            2 CTVSH-----EVADCS-HLKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC   69 (680)
T ss_dssp             --CBS-----SEEECC-SSCCSSCCSCSCT------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred             ceeEC-----CeeECC-CCCccccccccCC------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence            77765     568998 3455555555543      469999999999999998887766 9999999999999999999


Q ss_pred             cCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCC
Q psy10547        120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK  199 (269)
Q Consensus       120 ~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  199 (269)
                      .++++             |++|++++|.++.+++.+|.++. +|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus        70 ~~l~~-------------L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  135 (680)
T 1ziw_A           70 QKLPM-------------LKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS  135 (680)
T ss_dssp             HHCTT-------------CCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred             hcccC-------------cCEEECCCCccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccc
Confidence            99994             45555555555555444455555 55555555555555554445555555555555555554


Q ss_pred             CCCCcccCCCCCCEEEcCCCcccc
Q psy10547        200 IPDDSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       200 i~~~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      +++..+..+++|++|++++|.++.
T Consensus       136 ~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          136 TKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             cCchhhcccccCCEEEccCCcccc
Confidence            444444455555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=9.1e-23  Score=169.31  Aligned_cols=182  Identities=24%  Similarity=0.318  Sum_probs=152.4

Q ss_pred             ccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCC
Q psy10547         71 HVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN  149 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~  149 (269)
                      .+.....|+.|++++|.+..++...|.... |++|++++|.++++.+..|.+++             +|++|++++|.++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~  113 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------------SLQKLVAVETNLA  113 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-------------TCCEEECTTSCCC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-------------cccEEECCCCCcc
Confidence            455677899999999999999998888776 99999999999999989999999             7888999999888


Q ss_pred             ccChhHHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCC----EEEcCCCccccc
Q psy10547        150 SITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV----TLKLSDNNLTLY  224 (269)
Q Consensus       150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~----~L~L~~n~l~~~  224 (269)
                      .+.+..+..++ +|++|++++|.++.+. +..+..+++|+.|++++|.++.+++..+..+.+|+    .|++++|.++.+
T Consensus       114 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~  192 (276)
T 2z62_A          114 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (276)
T ss_dssp             CSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred             ccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence            88777788888 8999999999988753 56788889999999999998888777777666666    888999999887


Q ss_pred             cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547        225 KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       225 p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~  266 (269)
                      +.......+|+.|++++|.++++|       ++|++|++++|+++.-.+
T Consensus       193 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            776666668899999998887765       468889999998886443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=2.1e-22  Score=178.58  Aligned_cols=191  Identities=27%  Similarity=0.401  Sum_probs=167.6

Q ss_pred             hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547         69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I  136 (269)
Q Consensus        69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~  136 (269)
                      +..+.....|+.|++++|.+..++...|.... |++|++++|+++.+.+..|..+++|++|+  .|.+..         .
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            44566778899999999999999988888776 99999999999999998999999999765  333322         2


Q ss_pred             cccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 FIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                      +|+.|++++ +.++.+.+..|.++. +|++|++++|+++.++.  +..+++|+.|++++|.++.+++..|..+++|+.|+
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             cccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            899999998 688888888899999 99999999999999863  88899999999999999999888999999999999


Q ss_pred             cCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCC
Q psy10547        216 LSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLK  262 (269)
Q Consensus       216 L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~  262 (269)
                      +++|.++.+ +..+..+++|+.|++++|.+++++       ++|+.|++++|++.
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            999999975 668999999999999999998865       47999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=7.3e-23  Score=178.04  Aligned_cols=174  Identities=23%  Similarity=0.363  Sum_probs=140.2

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ...++.++++++.+..+|...|.... |++|++++|.+.++.+.+|..++             +|++|++++|.++++.+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~  110 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------------TIQKLYMGFNAIRYLPP  110 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------------TCCEEECCSSCCCCCCT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-------------CcCEEECCCCCCCcCCH
Confidence            35578999999999999988877665 99999999999999888899998             78889999999999888


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL  233 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~  233 (269)
                      ..|..++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++  +..+++
T Consensus       111 ~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~  187 (390)
T 3o6n_A          111 HVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS  187 (390)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred             HHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence            8888888 8999999999999888877888899999999999998888878888899999999999888764  455666


Q ss_pred             CceeeeccCcccccc--cccceeecCCCCCCCC
Q psy10547        234 NNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       234 L~~l~l~~n~~~~l~--~~L~~L~l~~n~l~~~  264 (269)
                      |+.+++++|.+.+++  .++++|++++|+++.+
T Consensus       188 L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~  220 (390)
T 3o6n_A          188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVV  220 (390)
T ss_dssp             CSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred             cceeecccccccccCCCCcceEEECCCCeeeec
Confidence            666666666665532  3455555555554443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=3.8e-22  Score=173.53  Aligned_cols=191  Identities=24%  Similarity=0.343  Sum_probs=124.3

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccc--------cc-cccccEE
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT--------FN-GIFIKNL  141 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~--------~~-~~~L~~L  141 (269)
                      ....|+.|++++|.+..++...|.... |++|++++|.++++.+..|..+++|++|+  .+.        |. ..+|++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            445688999999999988888877766 99999999999998888888888887654  111        22 1278888


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh-----------------------------------------
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET-----------------------------------------  180 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~-----------------------------------------  180 (269)
                      ++++|.++++.+..|..++ +|++|++++|+++.++...                                         
T Consensus       147 ~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~  225 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  225 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred             ECCCCccCccChhhccCCC-CCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence            8888888888777777777 7888888887776554322                                         


Q ss_pred             ------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547        181 ------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN  242 (269)
Q Consensus       181 ------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n  242 (269)
                                        +..+++|+.|++++|.++.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence                              23334455555555555444444455555555555555555555554555555555555555


Q ss_pred             cccccc------cccceeecCCCCCCCCC
Q psy10547        243 SFRGLE------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       243 ~~~~l~------~~L~~L~l~~n~l~~~p  265 (269)
                      .+.++|      ++|++|++++|+++.+|
T Consensus       306 ~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          306 HLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             cceecCccccccCcCCEEECCCCccceeC
Confidence            555443      34555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.1e-22  Score=173.05  Aligned_cols=204  Identities=17%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             CceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc
Q psy10547         49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI  128 (269)
Q Consensus        49 ~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  128 (269)
                      ....+..+.+..+|       ..+.....|++|++++|.+..+|........|++|++++|.++.+ |..+..+++|++|
T Consensus        84 ~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L  155 (328)
T 4fcg_A           84 VALELRSVPLPQFP-------DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLREL  155 (328)
T ss_dssp             CEEEEESSCCSSCC-------SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEE
T ss_pred             eEEEccCCCchhcC-------hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEE
Confidence            34445444444443       333345568889999888888876665555589999999988855 6678888866554


Q ss_pred             cccc----------cc----------cccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC
Q psy10547        129 NENT----------FN----------GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT  188 (269)
Q Consensus       129 ~~~~----------~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  188 (269)
                      +...          +.          ..+|++|++++|.++.+ |..+..++ +|++|++++|+++++++ .+..+++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~-~L~~L~L~~N~l~~l~~-~l~~l~~L~  232 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQ-NLKSLKIRNSPLSALGP-AIHHLPKLE  232 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGGGCT-TCCEEEEESSCCCCCCG-GGGGCTTCC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhcCCC-CCCEEEccCCCCCcCch-hhccCCCCC
Confidence            3111          00          12555666666665533 33455555 56666666666665554 355556666


Q ss_pred             EEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccccCcCCCceeeeccCcccc-cc------cccceeecCCCC
Q psy10547        189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTK  260 (269)
Q Consensus       189 ~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~  260 (269)
                      .|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +|      ++++.+++..+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            6666665554433345555566666666655443 355556666666666666654433 22      245555555554


Q ss_pred             CCC
Q psy10547        261 LKS  263 (269)
Q Consensus       261 l~~  263 (269)
                      +..
T Consensus       313 ~~~  315 (328)
T 4fcg_A          313 QAQ  315 (328)
T ss_dssp             SCC
T ss_pred             HHH
Confidence            444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=1.8e-22  Score=171.96  Aligned_cols=190  Identities=25%  Similarity=0.370  Sum_probs=144.3

Q ss_pred             ccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--ccc----------cccccc
Q psy10547         71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT----------FNGIFI  138 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~----------~~~~~L  138 (269)
                      .+.....|+.|++++|.+..++...+  ..|++|++++|.++.+.+..|..+++|+.|+  .+.          +.+.+|
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L  174 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL  174 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred             HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence            34444555566666665555555554  2356666666666666666677777776543  222          222367


Q ss_pred             cEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCC
Q psy10547        139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD  218 (269)
Q Consensus       139 ~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~  218 (269)
                      +.|++++|.++.++...+   . +|++|++++|.++++++..+..+++|+.|++++|.++.+++..+..+++|+.|++++
T Consensus       175 ~~L~l~~n~l~~l~~~~~---~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          175 NYLRISEAKLTGIPKDLP---E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             SCCBCCSSBCSSCCSSSC---S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             CEEECcCCCCCccCcccc---C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            777777777777644222   4 899999999999999888899999999999999999999988899999999999999


Q ss_pred             CccccccccccCcCCCceeeeccCcccccc-------------cccceeecCCCCCC--CCCC
Q psy10547        219 NNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNLKNTKLK--SVTP  266 (269)
Q Consensus       219 n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n~l~--~~p~  266 (269)
                      |.++.+|..+..+++|+.|++++|.+++++             ..++.|++++|++.  .++|
T Consensus       251 N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             SCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             CcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            999999999999999999999999998764             24789999999987  4443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=2.2e-22  Score=178.21  Aligned_cols=130  Identities=27%  Similarity=0.424  Sum_probs=115.5

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      +++.|++++|.+++..+..|..++ +|++|++++|+++++++..|..+++|+.|++++|.++++++..+..+++|+.|++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             CceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            466666666677777777788888 9999999999999999888999999999999999999998888999999999999


Q ss_pred             CCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        217 SDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       217 ~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      ++|.++.+ |..+..+++|++|++++|+++++|       ++|++|++++|+++.-.|.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999976 778999999999999999998865       4799999999999986654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.9e-22  Score=164.71  Aligned_cols=176  Identities=28%  Similarity=0.428  Sum_probs=154.8

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..++.++++++.+..++. ......|++|++++|.+.++  ..+..++             +|++|++++|.++++.+..
T Consensus        41 ~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~-------------~L~~L~L~~n~l~~~~~~~  104 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELT-------------NLTYLILTGNQLQSLPNGV  104 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC--GGGTTCT-------------TCCEEECTTSCCCCCCTTT
T ss_pred             cceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc--hhhcCCC-------------CCCEEECCCCccCccChhH
Confidence            447999999999887763 22333499999999999986  3677888             8899999999999999988


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCC
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELN  234 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L  234 (269)
                      |..++ +|++|++++|+++++++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|
T Consensus       105 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          105 FDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            99998 99999999999999998889999999999999999999998888999999999999999998765 57899999


Q ss_pred             ceeeeccCcccccc-------cccceeecCCCCCCCCCCCC
Q psy10547        235 NNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       235 ~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      +.|++++|.+.+++       ++|++|++++|++..-.|.+
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  224 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence            99999999988765       47999999999998766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=4.9e-22  Score=169.04  Aligned_cols=187  Identities=20%  Similarity=0.331  Sum_probs=105.2

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC---------------------cccccCCccccccc
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT---------------------PNAFRHLDAIRNIN  129 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~l~  129 (269)
                      +.....|+.|++++|.+..+.+..|.... |++|++++|.++.+.                     +..|..+++|+.|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            34455566666666666666555554443 666666666655443                     33344444444332


Q ss_pred             --ccccc----------c-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC
Q psy10547        130 --ENTFN----------G-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK  196 (269)
Q Consensus       130 --~~~~~----------~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  196 (269)
                        .+.+.          + .+|++|++++|.++.++...+   . +|++|++++|+++++.+..+..+++|+.|++++|.
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence              11111          0 144555555555554432211   2 55566666666666555556666666666666666


Q ss_pred             CCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-------------cccceeecCCCCCC
Q psy10547        197 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNLKNTKLK  262 (269)
Q Consensus       197 i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n~l~  262 (269)
                      ++.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+++++             ..++.|++++|++.
T Consensus       228 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            6666555566666666666666666666666666666666666666666543             24556666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=176.01  Aligned_cols=185  Identities=24%  Similarity=0.390  Sum_probs=139.8

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cc--------cccc-ccccEEEcCCCC
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--EN--------TFNG-IFIKNLQLSHCR  147 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~--------~~~~-~~L~~L~l~~n~  147 (269)
                      ..++..+..+..+|.+...  .++.|++++|+++.+.+..|.++++|++|+  .|        .|.+ .+|++|++++|.
T Consensus        46 ~~v~c~~~~l~~iP~~~~~--~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCT--TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCCC--CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            5788999999999987763  479999999999999999999999777554  22        2222 267777777777


Q ss_pred             CCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC-CCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547        148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       148 i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~  226 (269)
                      ++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++ +.+..+++..|..+++|+.|++++|.++.+| 
T Consensus       124 l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-  201 (440)
T ss_dssp             CSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred             CCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence            7777776777777 777777777777777777777777777777777 4556666667777778888888888887776 


Q ss_pred             cccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        227 SFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       227 ~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      .+..+++|+.|++++|.+++++       ++|++|++++|+++.+++.
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence            4777778888888888776652       4778888888888776653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=1.7e-22  Score=183.00  Aligned_cols=175  Identities=25%  Similarity=0.324  Sum_probs=156.1

Q ss_pred             CcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN  154 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~  154 (269)
                      ..++.|++++|.+..+++..|.... |++|++++|+++++.+.+|..++             +|++|++++|.++++.+.
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-------------SLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTSCCCSCCHH
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-------------cCCEEECCCCccCccCHH
Confidence            3479999999999999888887776 99999999999999999999999             889999999999999998


Q ss_pred             HHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCc
Q psy10547        155 AFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGL  231 (269)
Q Consensus       155 ~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l  231 (269)
                      .|.+++ +|++|++++|.++++. +..+..+++|++|++++|. ++.+++..+..+++|++|++++|.++. +|..+..+
T Consensus        93 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A           93 WFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             HHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            899999 9999999999999753 3568899999999999998 678887789999999999999999986 68889999


Q ss_pred             CCCceeeeccCcccccc-------cccceeecCCCCCCCC
Q psy10547        232 ELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       232 ~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~  264 (269)
                      ++|++|+++.|.+..++       ++|++|++++|+++++
T Consensus       172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             ccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            99999999999876543       4899999999999885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.5e-22  Score=185.49  Aligned_cols=175  Identities=23%  Similarity=0.361  Sum_probs=142.3

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ...+++++++++.+..+|...|..+. |+.|++++|.++++.+..|..++             +|++|++++|.++++++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~  116 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------------TIQKLYMGFNAIRYLPP  116 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------------TCCEEECCSSCCCCCCT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-------------CCCEEECCCCcCCCCCH
Confidence            34578999999999999988887665 99999999999999888999998             78889999999999988


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL  233 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~  233 (269)
                      ..|..++ +|++|++++|.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.++  +..+++
T Consensus       117 ~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~  193 (597)
T 3oja_B          117 HVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS  193 (597)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred             HHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence            8888888 8999999999999988887888999999999999998888878888999999999999988765  455666


Q ss_pred             CceeeeccCcccccc--cccceeecCCCCCCCCC
Q psy10547        234 NNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       234 L~~l~l~~n~~~~l~--~~L~~L~l~~n~l~~~p  265 (269)
                      |+.+++++|.+.+++  .+|+.|++++|.++.+|
T Consensus       194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             hhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            777777777666532  34555555555554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=181.12  Aligned_cols=171  Identities=26%  Similarity=0.391  Sum_probs=116.5

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA  118 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~  118 (269)
                      .|+|....   ..+.|.+ .++.++|..+|..      ++.|++++|.+..++...|.... |++|++++|+++++.+.+
T Consensus         2 ~c~~~~~~---~~~~c~~-~~l~~ip~~l~~~------l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~   71 (570)
T 2z63_A            2 PCVEVVPN---ITYQCME-LNFYKIPDNLPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA   71 (570)
T ss_dssp             CSEEEETT---TEEECCS-SCCSSCCSSSCSS------CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT
T ss_pred             CccccCCC---cEEEeCC-CCccccCCCcccc------ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc
Confidence            37775432   5699984 5556666555543      59999999999999988888776 999999999999999999


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG  198 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  198 (269)
                      |.+++             +|++|++++|.++.+.+..|.++. +|++|++++|+++.+++..+..+++|++|++++|.++
T Consensus        72 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  137 (570)
T 2z63_A           72 YQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (570)
T ss_dssp             TTTCT-------------TCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred             ccCch-------------hCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCCccc
Confidence            99999             556666666666666666666666 6666666666666665545666666666666666665


Q ss_pred             CCC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCC
Q psy10547        199 KIP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELN  234 (269)
Q Consensus       199 ~i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L  234 (269)
                      .+. +..+.++++|+.|++++|.++.+ +..+..+.+|
T Consensus       138 ~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             eecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            432 23566666666666666666543 2334444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=8.7e-22  Score=180.38  Aligned_cols=191  Identities=24%  Similarity=0.346  Sum_probs=125.0

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccc--------ccc-ccccEE
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT--------FNG-IFIKNL  141 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L  141 (269)
                      ....|+.|++++|.+..+++..|.... |+.|++++|.++++.+..|.++++|+.|+  .+.        |.. .+|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            456688999999999988887777766 99999999999998888888888887654  222        222 277888


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh-----------------------------------------
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET-----------------------------------------  180 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~-----------------------------------------  180 (269)
                      ++++|.++++.+..|..++ +|++|++++|.+++++...                                         
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             EeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            8888888888777777777 7888888887777654322                                         


Q ss_pred             ------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547        181 ------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN  242 (269)
Q Consensus       181 ------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n  242 (269)
                                        +..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC
Confidence                              33344455555555555544444555555555555555555555555555555555555555


Q ss_pred             cccccc------cccceeecCCCCCCCCC
Q psy10547        243 SFRGLE------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       243 ~~~~l~------~~L~~L~l~~n~l~~~p  265 (269)
                      .+..+|      ++|++|++++|+++.+|
T Consensus       312 ~l~~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          312 HLLHVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCccCcccccCCCCCEEECCCCCCCCcC
Confidence            555443      34555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.3e-22  Score=181.40  Aligned_cols=193  Identities=19%  Similarity=0.239  Sum_probs=123.2

Q ss_pred             hhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc------
Q psy10547         65 KATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------  135 (269)
Q Consensus        65 ~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------  135 (269)
                      +..+.........++.|++++|.+..+++..|.... |++|++++|.++++.+  |..+++|+.|+  .|.+.+      
T Consensus        23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~  100 (487)
T 3oja_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS  100 (487)
T ss_dssp             HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTT
T ss_pred             HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCC
Confidence            333433333444678888888888877776666655 8888888888877654  67777777554  222222      


Q ss_pred             -------------------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc-CCCCCCEEeccCC
Q psy10547        136 -------------------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR-HLKNLTLIDLSKN  195 (269)
Q Consensus       136 -------------------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n  195 (269)
                                         .+|+.|++++|.++++.|..|..++ +|++|++++|.+++.++..+. .+++|+.|++++|
T Consensus       101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence                               1455666666666666665666666 667777777766665555554 5666777777777


Q ss_pred             CCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547        196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      .++.+++  ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+.++|      ++|+.|++++|++.
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            6666643  23466677777777777666666666677777777777666654      35666777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=7.8e-23  Score=173.18  Aligned_cols=184  Identities=18%  Similarity=0.252  Sum_probs=126.3

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccccccc--------------
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI--------------  136 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~--------------  136 (269)
                      ....++.|++++|.+..+++..|.... |++|++++|.++++.+  +..+++|++|+  .+.+.+.              
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            445678888888888877766666555 8888888888877654  67777777554  2322221              


Q ss_pred             -----------cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh-cCCCCCCEEeccCCCCCCCCCCc
Q psy10547        137 -----------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDS  204 (269)
Q Consensus       137 -----------~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~i~~~~  204 (269)
                                 +|+.|++++|.++++.+..|..++ +|++|++++|+++++.+..+ ..+++|++|++++|.++.++.  
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--  186 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--  186 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--
Confidence                       456666666666666666666666 77777777777777665555 356777777777777776643  


Q ss_pred             ccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547        205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       205 ~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.++.+|      ++|+.|++++|++.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            23467777777777777777666777777777777777776654      46777777777776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1.7e-21  Score=177.23  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             eEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc
Q psy10547         51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN  129 (269)
Q Consensus        51 ~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  129 (269)
                      ..+.|. ..++..+|..++      ..++.|++++|.+..++++.|.... |++|++++|+++++.|.+|.++++|++|+
T Consensus        34 ~~l~ls-~~~L~~ip~~~~------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           34 SMVDYS-NRNLTHVPKDLP------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CEEECT-TSCCCSCCTTSC------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cEEEcC-CCCCccCCCCCC------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            468887 344555544444      3469999999999999988888776 99999999999999999999999999765


Q ss_pred             --ccccc------cccccEEEcCCCCCCccC-hhHHhhccccccEEEccCCCCCc
Q psy10547        130 --ENTFN------GIFIKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQENDLEQ  175 (269)
Q Consensus       130 --~~~~~------~~~L~~L~l~~n~i~~~~-~~~~~~l~~~L~~L~l~~n~l~~  175 (269)
                        .|.+.      ..+|++|++++|.++++. |..|.+++ +|++|++++|+++.
T Consensus       107 Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~  160 (562)
T 3a79_B          107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCT
T ss_pred             CCCCcCCccCccccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCcccc
Confidence              33333      237999999999999865 57888888 88888888887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=5.5e-22  Score=161.22  Aligned_cols=173  Identities=19%  Similarity=0.349  Sum_probs=153.1

Q ss_pred             ccCCCCcccEEEecCCC-ccccCcCCCCCCc-ccEEEecC-CCCcccCcccccCCcccccccccccccccccEEEcCCCC
Q psy10547         71 HVNTKVPLDLLYINNSA-IRNINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCR  147 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~-i~~l~~~~~~~~~-L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~  147 (269)
                      .+.....|+.|++++|. +..++...|.... |++|++++ |+++++.+.+|.+++             +|++|++++|.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-------------~L~~L~l~~n~  116 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-------------LLKFLGIFNTG  116 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-------------TCCEEEEEEEC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-------------CCCEEeCCCCC
Confidence            45567789999999997 9999998887765 99999999 999999999999999             88899999999


Q ss_pred             CCccChhHHhhcccccc---EEEccCC-CCCccChhhhcCCCCCC-EEeccCCCCCCCCCCcccCCCCCCEEEcCCCc-c
Q psy10547        148 INSITPNAFRHLEFTLK---HLNLQEN-DLEQVPVETLRHLKNLT-LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-L  221 (269)
Q Consensus       148 i~~~~~~~~~~l~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~-l  221 (269)
                      +++++.  |..+. +|+   +|++++| .++.+++..|..+++|+ .|++++|.++.+++..+.. ++|+.|++++|+ +
T Consensus       117 l~~lp~--~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          117 LKMFPD--LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             CCSCCC--CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred             Cccccc--ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence            999754  77887 888   9999999 99999998899999999 9999999999999877766 899999999995 9


Q ss_pred             cccc-ccccCc-CCCceeeeccCcccccc----cccceeecCCCC
Q psy10547        222 TLYK-NSFRGL-ELNNNLTLYKNSFRGLE----LSLKNLNLKNTK  260 (269)
Q Consensus       222 ~~~p-~~~~~l-~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~  260 (269)
                      +.++ ..+..+ ++|+.|++++|+++++|    ++++.|+++++.
T Consensus       193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred             ccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence            9875 568888 99999999999999876    478899998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=5.3e-22  Score=171.03  Aligned_cols=168  Identities=24%  Similarity=0.328  Sum_probs=151.9

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCccccc-CCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      ++++++++.+..+|......  ++.|++++|+++++.+..|. .++             +|+.|++++|.++.+.+..|.
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~--l~~L~Ls~N~l~~l~~~~~~~~l~-------------~L~~L~L~~N~i~~i~~~~~~   85 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSY--TALLDLSHNNLSRLRAEWTPTRLT-------------NLHSLLLSHNHLNFISSEAFV   85 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTT--CSEEECCSSCCCEECTTSSSSCCT-------------TCCEEECCSSCCCEECTTTTT
T ss_pred             CEEEeCCCCcCccCccCCCC--CCEEECCCCCCCccChhhhhhccc-------------ccCEEECCCCcCCccChhhcc
Confidence            67999999999999876543  69999999999999998887 888             889999999999999999999


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccc----cCcCC
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF----RGLEL  233 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~----~~l~~  233 (269)
                      .++ +|++|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|..+    ..+++
T Consensus        86 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           86 PVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             TCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            999 9999999999999999989999999999999999999998889999999999999999999988754    57999


Q ss_pred             CceeeeccCccccccc-------c--cceeecCCCCCC
Q psy10547        234 NNNLTLYKNSFRGLEL-------S--LKNLNLKNTKLK  262 (269)
Q Consensus       234 L~~l~l~~n~~~~l~~-------~--L~~L~l~~n~l~  262 (269)
                      |+.|++++|.|+.+|.       .  ++.|++++|++.
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999999999998761       2  478999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=1.5e-21  Score=156.86  Aligned_cols=152  Identities=28%  Similarity=0.428  Sum_probs=141.3

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      +.++++++.+..+|....  ..++.|++++|+++++.+..|..++             +|+.|++++|.++.+.+..|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-------------~L~~L~Ls~N~i~~~~~~~~~~   78 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-------------KLRRIDLSNNQISELAPDAFQG   78 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-------------TCCEEECCSSCCCEECTTTTTT
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-------------CCCEEECCCCcCCCcCHHHhhC
Confidence            678999999999998765  3489999999999999998999999             8899999999999999999999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL  237 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l  237 (269)
                      +. +|++|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.++. .+..+++|+.+
T Consensus        79 l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           79 LR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             Cc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            99 99999999999999999989999999999999999999998899999999999999999998765 68899999999


Q ss_pred             eeccCcccc
Q psy10547        238 TLYKNSFRG  246 (269)
Q Consensus       238 ~l~~n~~~~  246 (269)
                      ++++|.|..
T Consensus       158 ~L~~N~~~c  166 (220)
T 2v9t_B          158 HLAQNPFIC  166 (220)
T ss_dssp             ECCSSCEEC
T ss_pred             EeCCCCcCC
Confidence            999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=1.6e-21  Score=178.90  Aligned_cols=174  Identities=20%  Similarity=0.263  Sum_probs=157.3

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      .+.+.++..+..||.++-  ..+++|++++|+|+++.+.+|.+++             +|++|+|++|.|+++++.+|.+
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~-------------~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-------------ELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCC-------------CCCEEECCCCcCCCcChhHhcC
Confidence            467888888999998762  3479999999999999999999999             8999999999999999999999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN  236 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~  236 (269)
                      ++ +|++|++++|++++++++.|..+++|++|++++|+++.+++..|.++++|++|++++|.++.  +|..+..++.|++
T Consensus        99 L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  177 (635)
T 4g8a_A           99 LS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  177 (635)
T ss_dssp             CT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence            99 99999999999999999999999999999999999999999889999999999999999985  5778999999999


Q ss_pred             eeeccCcccccc-----------cccceeecCCCCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-----------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       237 l~l~~n~~~~l~-----------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      |++++|.+++++           .....++++.|+++.+++..
T Consensus       178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~  220 (635)
T 4g8a_A          178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  220 (635)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             hcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence            999999998764           12446899999999888753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=6.5e-22  Score=186.15  Aligned_cols=195  Identities=17%  Similarity=0.226  Sum_probs=120.7

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCC-CCcccEEEecCCCCcccCcccccCCccccccc--cccccc---------cccc
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFN-GIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------IFIK  139 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~~L~  139 (269)
                      +.....|+.|++++|.+....+..+. ...|++|++++|++++..|..+..+++|++|+  .|.+.+         .+|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            33344455555555555533222222 22366666666666666666666666666443  222221         1566


Q ss_pred             EEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh---------------------------------------
Q psy10547        140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET---------------------------------------  180 (269)
Q Consensus       140 ~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~---------------------------------------  180 (269)
                      +|++++|.+++..|..+..++ +|++|++++|++++..|..                                       
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             EEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            667777766666666666666 6777777776665322211                                       


Q ss_pred             -------------------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccc
Q psy10547        181 -------------------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSF  228 (269)
Q Consensus       181 -------------------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~  228 (269)
                                                     +..+++|+.|++++|++++..+..+..+++|+.|+|++|.++ .+|..+
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence                                           222456677777777776555557777888888888888887 477788


Q ss_pred             cCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCCCC
Q psy10547        229 RGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       229 ~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.+++|+.|++++|++++ +|      +.|++||+++|++++.+|.
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            888888888888887775 23      4678888888888775443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=4.2e-22  Score=168.33  Aligned_cols=175  Identities=20%  Similarity=0.155  Sum_probs=148.1

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCC------CcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNG------IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC  146 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n  146 (269)
                      .....|+.|++++|.+..+| ..+..      .+|++|++++|++.++.+..|..++             +|++|++++|
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-------------~L~~L~Ls~N  183 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-------------ALSTLDLSDN  183 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-------------SCCEEECCSC
T ss_pred             hcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-------------CCCEEECCCC
Confidence            57788999999999999884 33333      3599999999999999999999999             8899999999


Q ss_pred             CCCccC--hhHH--hhccccccEEEccCCCCCc---cChhhhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCC
Q psy10547        147 RINSIT--PNAF--RHLEFTLKHLNLQENDLEQ---VPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSD  218 (269)
Q Consensus       147 ~i~~~~--~~~~--~~l~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~  218 (269)
                      .+.+..  +..+  ..++ +|++|++++|+++.   ++...+..+++|+.|++++|.++..+ ...+..+++|+.|++++
T Consensus       184 ~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          184 PELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             TTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred             CcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence            987642  3333  6777 99999999999994   44455678899999999999998765 34567789999999999


Q ss_pred             CccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCC
Q psy10547        219 NNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       219 n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~  264 (269)
                      |.++.+|..+.  ++|+.|++++|+++++|     ++|++|++++|++++.
T Consensus       263 N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          263 TGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred             CccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence            99999998777  89999999999999876     5899999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=3.2e-22  Score=168.41  Aligned_cols=191  Identities=21%  Similarity=0.328  Sum_probs=157.2

Q ss_pred             cCCCCcccEEEecCCCcccc---CcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cc---------cccc-c
Q psy10547         72 VNTKVPLDLLYINNSAIRNI---NENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--EN---------TFNG-I  136 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~---------~~~~-~  136 (269)
                      +.....|+.|++++|.+..+   +...+....|++|++++|.+..+ +..+..+++|++|+  .+         .+.. .
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence            44667789999999988765   34444444589999999988876 44577888888664  12         1222 2


Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                      +|++|++++|.+++..+..|..++ +|++|++++|.+++ ..+..+..+++|+.|++++|.++.+++..+..+++|+.|+
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            899999999999999888899998 99999999999987 4556789999999999999999999878899999999999


Q ss_pred             cCCCccccccc-cccCcCCCceeeeccCccccc--------ccccceeecCCCCCCCC
Q psy10547        216 LSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGL--------ELSLKNLNLKNTKLKSV  264 (269)
Q Consensus       216 L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l--------~~~L~~L~l~~n~l~~~  264 (269)
                      +++|.++.++. .+..+++|+.|++++|.+.+.        |++|++|++++|+++.-
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            99999998755 788999999999999988763        24899999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=3.4e-21  Score=154.72  Aligned_cols=152  Identities=24%  Similarity=0.365  Sum_probs=139.8

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCc-ccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      +.++++++.+..+|......  +++|++++|+++++.+ ..|..++             +|++|++++|.++++.+..|.
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~--~~~L~L~~N~l~~~~~~~~~~~l~-------------~L~~L~L~~N~i~~i~~~~~~   78 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQY--TAELRLNNNEFTVLEATGIFKKLP-------------QLRKINFSNNKITDIEEGAFE   78 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTT--CSEEECCSSCCCEECCCCCGGGCT-------------TCCEEECCSSCCCEECTTTTT
T ss_pred             CEeEeCCCCcccCccCCCCC--CCEEEcCCCcCCccCchhhhccCC-------------CCCEEECCCCcCCEECHHHhC
Confidence            68999999999999876543  5899999999999954 5688888             889999999999999999999


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCce
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNN  236 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~  236 (269)
                      .+. +|++|++++|.++++++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.+ |..+..+++|+.
T Consensus        79 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           79 GAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             TCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            999 999999999999999999999999999999999999999888999999999999999999987 778999999999


Q ss_pred             eeeccCcccc
Q psy10547        237 LTLYKNSFRG  246 (269)
Q Consensus       237 l~l~~n~~~~  246 (269)
                      |++++|.+..
T Consensus       158 L~L~~N~l~c  167 (220)
T 2v70_A          158 LNLLANPFNC  167 (220)
T ss_dssp             EECCSCCEEC
T ss_pred             EEecCcCCcC
Confidence            9999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=5.5e-21  Score=154.44  Aligned_cols=157  Identities=24%  Similarity=0.445  Sum_probs=123.9

Q ss_pred             CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547         39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN  117 (269)
Q Consensus        39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~  117 (269)
                      ..|.|.|     .+|.|. ..++..+|..++      ..++.|++++|.+..+++..|..+. |+.|++++|+++.+.+.
T Consensus        15 ~~~~Cs~-----~~v~c~-~~~l~~ip~~~~------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           15 SQCSCSG-----TTVDCR-SKRHASVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG   82 (229)
T ss_dssp             TTCEEET-----TEEECT-TSCCSSCCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCEEeC-----CEeEcc-CCCcCccCCCCC------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence            5689988     679998 444555554444      3458888888888888777776665 88888888888888777


Q ss_pred             cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC
Q psy10547        118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI  197 (269)
Q Consensus       118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  197 (269)
                      .|..++             +|+.|++++|.++.+.+..|..+. +|++|++++|+++.++. .+..+++|+.|++++|.+
T Consensus        83 ~~~~l~-------------~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           83 VFDSLT-------------QLTVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             TTTTCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCC
T ss_pred             hcccCC-------------CcCEEECCCCcCCccChhHhCcch-hhCeEeccCCcccccCc-ccccCCCCCEEECCCCcC
Confidence            788888             777888888888888877788887 88888888888887764 467788888888888888


Q ss_pred             CCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        198 GKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       198 ~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +.+++..+..+++|+.|++++|.+.
T Consensus       148 ~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          148 KSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8888777888888888888888876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=4.1e-21  Score=175.99  Aligned_cols=174  Identities=17%  Similarity=0.223  Sum_probs=159.6

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      ..++++++.+..+|.+..  ..+++|++++|+++++.+..|.+++             +|++|++++|.++++.|.+|.+
T Consensus        14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~i~~~~~~~   78 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFS-------------ELQWLDLSRCEIETIEDKAWHG   78 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTCCCCEECTTTTTT
T ss_pred             CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCc-------------cCcEEeCCCCcccccCHHHhhc
Confidence            579999999999998775  3489999999999999999999999             8899999999999999999999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN  236 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~  236 (269)
                      +. +|++|++++|+++++.+..|..+++|++|++++|.++.+++..+..+++|++|++++|.++.  +|..++++++|++
T Consensus        79 l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           79 LH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             CT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             hh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            99 99999999999999988899999999999999999999997789999999999999999984  7899999999999


Q ss_pred             eeeccCccccccc-------c----cceeecCCCCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLEL-------S----LKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       237 l~l~~n~~~~l~~-------~----L~~L~l~~n~l~~~p~~~  268 (269)
                      |++++|.+.+++.       +    +.+|++++|+++.+|+..
T Consensus       158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~  200 (606)
T 3vq2_A          158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA  200 (606)
T ss_dssp             EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred             EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence            9999999988642       2    458999999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=1.4e-21  Score=180.18  Aligned_cols=195  Identities=19%  Similarity=0.329  Sum_probs=134.9

Q ss_pred             hhhccCCCCcccEEEecCCCccc------------------cCcCCC--CCCcccEEEecCCCCcccCcccccCCccccc
Q psy10547         68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLDAIRN  127 (269)
Q Consensus        68 l~~~~~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  127 (269)
                      +|..+.....|++|++++|.+..                  +|..+.  ...+|++|++++|.+.+..|..|.++++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            67778888999999999999998                  888877  6667999999999999999999999997665


Q ss_pred             cc--ccc-ccc----------------ccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCC-ccChhhhcCCCC
Q psy10547        128 IN--ENT-FNG----------------IFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKN  186 (269)
Q Consensus       128 l~--~~~-~~~----------------~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~-~~~~~~~~~l~~  186 (269)
                      |+  .+. +.+                .+|++|++++|.++.++. ..+..++ +|++|++++|+++ .++  .+..+++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip--~~~~l~~  354 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGKLP--AFGSEIK  354 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCT-TCCEEECCSCCCEEECC--CCEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCC-CCCEEeCcCCcCccchh--hhCCCCC
Confidence            44  333 444                456666666666664432 1566666 6666666666666 333  4666666


Q ss_pred             CCEEeccCCCCCCCCCCcccCCCC-CCEEEcCCCccccccccccCcC--CCceeeeccCccccc-----c---------c
Q psy10547        187 LTLIDLSKNKIGKIPDDSFSTLNN-LVTLKLSDNNLTLYKNSFRGLE--LNNNLTLYKNSFRGL-----E---------L  249 (269)
Q Consensus       187 L~~L~l~~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~p~~~~~l~--~L~~l~l~~n~~~~l-----~---------~  249 (269)
                      |+.|++++|.++.+|. .+..+++ |+.|++++|.++.+|..+..+.  +|+.|++++|.+.+.     +         .
T Consensus       355 L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          355 LASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             ESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            6666666666665554 3566666 6666666666666666555543  666666666666542     1         2


Q ss_pred             ccceeecCCCCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       250 ~L~~L~l~~n~l~~~p~  266 (269)
                      +|++|++++|+++.+|+
T Consensus       434 ~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          434 NVSSINLSNNQISKFPK  450 (636)
T ss_dssp             CEEEEECCSSCCCSCCT
T ss_pred             CCCEEECcCCccCcCCH
Confidence            56667777777776665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=6.5e-21  Score=175.76  Aligned_cols=193  Identities=25%  Similarity=0.340  Sum_probs=118.5

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCc--cccccc--cccc---------------
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLD--AIRNIN--ENTF---------------  133 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~l~--~~~~---------------  133 (269)
                      ....|+.|++++|.+..+|........ |++|++++|.++.+ |..+..+.  +|+.|+  .|.+               
T Consensus       351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            334455566666555555555444444 55555555555533 33333322  444332  2222               


Q ss_pred             -ccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCC-------CCCEEeccCCCCCCCCCCcc
Q psy10547        134 -NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK-------NLTLIDLSKNKIGKIPDDSF  205 (269)
Q Consensus       134 -~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~i~~i~~~~~  205 (269)
                       ...+|++|++++|.++.+++..+..++ +|++|++++|+++.++...+....       +|+.|++++|.++.++...+
T Consensus       430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          430 FKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CCCCCEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             ccCCCCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence             122677778888877777666666666 777777777777777665554433       77777777777777765322


Q ss_pred             -cCCCCCCEEEcCCCccccccccccCcCCCceeeecc------Ccccc-cc------cccceeecCCCCCCCCCCCC
Q psy10547        206 -STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK------NSFRG-LE------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       206 -~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~------n~~~~-l~------~~L~~L~l~~n~l~~~p~~~  268 (269)
                       ..+++|+.|++++|.++.+|..+..+++|+.|++++      |.+.+ +|      ++|++|++++|+++.+|..+
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~  585 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI  585 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred             hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH
Confidence             267777777777777777777777777777777743      43332 22      36777777777777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=3.3e-21  Score=181.37  Aligned_cols=198  Identities=20%  Similarity=0.279  Sum_probs=151.9

Q ss_pred             hhhccCCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccc--cccccc---------
Q psy10547         68 LNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------  135 (269)
Q Consensus        68 l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------  135 (269)
                      +|..+.....|+.|++++|.+....+..+... .|+.|++++|.+.+..|..+..+++|++|+  .|.+.+         
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            34455566678888888888775544444444 488888888888888888888888888654  344432         


Q ss_pred             ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC-CCCCC-----------
Q psy10547        136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG-KIPDD-----------  203 (269)
Q Consensus       136 ~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-~i~~~-----------  203 (269)
                      .+|++|++++|.+++..|..+..++ +|++|++++|++++..+..+..+++|+.|++++|.+. .+|..           
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            2788888888888888888888888 8999999999888777778888899999999888774 34321           


Q ss_pred             ----------------------------------------------------------cccCCCCCCEEEcCCCccc-cc
Q psy10547        204 ----------------------------------------------------------SFSTLNNLVTLKLSDNNLT-LY  224 (269)
Q Consensus       204 ----------------------------------------------------------~~~~l~~L~~L~L~~n~l~-~~  224 (269)
                                                                                .+..+++|+.|++++|+++ .+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                      2334567889999999998 57


Q ss_pred             cccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCCC
Q psy10547        225 KNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       225 p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p~  266 (269)
                      |..++.++.|+.|++++|.+++ +|      ++|+.||+++|++++.+|
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence            8899999999999999999885 33      579999999999996443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=2.7e-21  Score=164.50  Aligned_cols=190  Identities=16%  Similarity=0.264  Sum_probs=149.9

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc--------ccccEEEcC
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG--------IFIKNLQLS  144 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~--------~~L~~L~l~  144 (269)
                      ...++.|++++|.+..+|..++....|++|++++|.++. .|..+..+++|++|+  .|.+..        .+|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            345799999999999999988876669999999999994 477889999888665  222221        278888888


Q ss_pred             CCCCCccChhHHh---------hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        145 HCRINSITPNAFR---------HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       145 ~n~i~~~~~~~~~---------~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                      +|.+.+..|..+.         +++ +|++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLV-NLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEEST-TCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCccccChhHhhccchhhhccCC-CCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            8776666665544         377 89999999998887764 48888999999999999988887 588889999999


Q ss_pred             cCCCccc-cccccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCC-CCCCC
Q psy10547        216 LSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKS-VTPYW  268 (269)
Q Consensus       216 L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~-~p~~~  268 (269)
                      +++|.+. .+|..+..+++|+.|++++|.+.+ +|      ++|++|++++|++.+ +|+++
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            9998766 578888999999999999876544 22      478999999977655 66554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=5.1e-21  Score=180.89  Aligned_cols=196  Identities=17%  Similarity=0.285  Sum_probs=151.4

Q ss_pred             hhhccCCCCcccEEEecCCCccc------------------cCcCCC--CCCcccEEEecCCCCcccCcccccCCccccc
Q psy10547         68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLDAIRN  127 (269)
Q Consensus        68 l~~~~~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  127 (269)
                      +|..+.....|+.|++++|.+..                  +|....  ...+|+.|++++|.+.+..|..|..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            77888889999999999999998                  888874  5556999999999999999999999998886


Q ss_pred             cc--ccc-ccc-----------------ccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCCccChhhhcCCCC
Q psy10547        128 IN--ENT-FNG-----------------IFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN  186 (269)
Q Consensus       128 l~--~~~-~~~-----------------~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~  186 (269)
                      |+  .|. +.+                 ++|+.|++++|.++.++. ..|..++ +|++|++++|.++.++  .|..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp--~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV-KLGLLDCVHNKVRHLE--AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT-TCCEEECTTSCCCBCC--CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC-CCCEEECCCCCcccch--hhcCCCc
Confidence            54  343 443                 157888888888885533 2677777 7888888888888665  5777888


Q ss_pred             CCEEeccCCCCCCCCCCcccCCCC-CCEEEcCCCccccccccccCcCC--CceeeeccCcccccc------------ccc
Q psy10547        187 LTLIDLSKNKIGKIPDDSFSTLNN-LVTLKLSDNNLTLYKNSFRGLEL--NNNLTLYKNSFRGLE------------LSL  251 (269)
Q Consensus       187 L~~L~l~~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~p~~~~~l~~--L~~l~l~~n~~~~l~------------~~L  251 (269)
                      |+.|++++|.++.+|. .+..+++ |+.|++++|.++.+|..+..+..  |+.|++++|.+.+.+            .+|
T Consensus       597 L~~L~Ls~N~l~~lp~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          597 LTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             ESEEECCSSCCSCCCT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred             ceEEECcCCccccchH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence            8888888888887765 4677777 88888888888877777766654  888888888775531            267


Q ss_pred             ceeecCCCCCCCCCCC
Q psy10547        252 KNLNLKNTKLKSVTPY  267 (269)
Q Consensus       252 ~~L~l~~n~l~~~p~~  267 (269)
                      +.|++++|+++.+|+.
T Consensus       676 ~~L~Ls~N~L~~lp~~  691 (876)
T 4ecn_A          676 STVTLSYNEIQKFPTE  691 (876)
T ss_dssp             EEEECCSSCCCSCCHH
T ss_pred             CEEEccCCcCCccCHH
Confidence            7888888888877753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.9e-21  Score=161.49  Aligned_cols=169  Identities=22%  Similarity=0.342  Sum_probs=136.2

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT  152 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~  152 (269)
                      ....|+.|++++|.+..++.  +... .|++|++++|.++++.  .+..++             +|++|++++|.++++.
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~-------------~L~~L~l~~n~l~~~~  123 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQ-------------SIKTLDLTSTQITDVT  123 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCT-------------TCCEEECTTSCCCCCG
T ss_pred             ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCC-------------CCCEEECCCCCCCCch
Confidence            45667888888888888877  4444 4888888888888763  567777             7888999999888874


Q ss_pred             hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547        153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE  232 (269)
Q Consensus       153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~  232 (269)
                      +  +..++ +|++|++++|.++++++  +..+++|+.|++++|.++.+++  +..+++|+.|++++|.++.++. +..++
T Consensus       124 ~--l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~  195 (308)
T 1h6u_A          124 P--LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLP  195 (308)
T ss_dssp             G--GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCT
T ss_pred             h--hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCC
Confidence            3  77787 89999999999888865  7888899999999998888775  7788889999999999888775 78888


Q ss_pred             CCceeeeccCcccccc-----cccceeecCCCCCCCCCCC
Q psy10547        233 LNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~~  267 (269)
                      +|+.|++++|.+.+++     ++|+.|++++|+++..|..
T Consensus       196 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             TCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             CCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCee
Confidence            8999999999887754     4788899999988876643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=2.6e-21  Score=163.85  Aligned_cols=174  Identities=22%  Similarity=0.291  Sum_probs=127.6

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc---------ccccEEE
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------IFIKNLQ  142 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~~L~~L~  142 (269)
                      ....|+.|++++|.+..++..    ..|++|++++|+++++.+..   +++|++|+  .|.+.+         .+|++|+
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred             hcCCCCEEECcCCccccccCC----CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence            344445555555555444422    23455555555555554433   33444432  222221         2799999


Q ss_pred             cCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        143 LSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       143 l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      +++|.++++.+..+. .++ +|++|++++|.++.++.  ...+++|+.|++++|.++.+++. +..+++|+.|++++|.+
T Consensus       151 Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCC
T ss_pred             CCCCCCCcccHHHHhhccC-cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcc
Confidence            999999998887774 577 99999999999999854  34589999999999999999874 88999999999999999


Q ss_pred             ccccccccCcCCCceeeeccCccc-c-cc------cccceeecCC
Q psy10547        222 TLYKNSFRGLELNNNLTLYKNSFR-G-LE------LSLKNLNLKN  258 (269)
Q Consensus       222 ~~~p~~~~~l~~L~~l~l~~n~~~-~-l~------~~L~~L~l~~  258 (269)
                      +.+|..+..+++|+.+++++|.+. + ++      ++++.+++++
T Consensus       227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            999999999999999999999998 2 22      3677777773

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=4.9e-21  Score=175.48  Aligned_cols=197  Identities=21%  Similarity=0.281  Sum_probs=161.5

Q ss_pred             hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547         69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I  136 (269)
Q Consensus        69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~  136 (269)
                      +..+.+...|++|++++|.+..+.++.|.... |++|++++|+++++.|.+|.++++|++|+  .+.+.+         .
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            45667888899999999999999888888776 99999999999999999999999998765  333333         2


Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC--EEeccCCCCCCCCCCcccCC------
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT--LIDLSKNKIGKIPDDSFSTL------  208 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~i~~i~~~~~~~l------  208 (269)
                      +|++|++++|.++++....+..++ +|++|++++|+++++.+..|..+++|+  .|++++|.++.+++..+...      
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCT-TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cccEEECCCCcccccCcccccCCc-ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence            789999999999887655555677 899999999999999888899999998  89999999887776554321      


Q ss_pred             ---------------------------------------------CCCCEEEcCCCccccccc-cccCcCCCceeeeccC
Q psy10547        209 ---------------------------------------------NNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKN  242 (269)
Q Consensus       209 ---------------------------------------------~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n  242 (269)
                                                                   .+|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                         157778888888887654 5888999999999999


Q ss_pred             cccccc------cccceeecCCCCCCCCCC
Q psy10547        243 SFRGLE------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       243 ~~~~l~------~~L~~L~l~~n~l~~~p~  266 (269)
                      .++.+|      ++|++|++++|+++.++|
T Consensus       289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          289 HLSELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             ccCCCChhhcccccCCEEECccCCcCcCch
Confidence            888776      478999999999988755

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=2.2e-20  Score=173.39  Aligned_cols=173  Identities=28%  Similarity=0.401  Sum_probs=159.0

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      +.++++++.+..+|.+..  ..+++|++++|.++++.+..|.+++             +|++|++++|.++++.|..|.+
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~   71 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYS-------------QLTSLDVGFNTISKLEPELCQK   71 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGT-------------TCSEEECCSSCCCCCCTTHHHH
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCC-------------cCcEEECCCCccCccCHHHHhc
Confidence            679999999999998764  4589999999999999998999999             8899999999999999999999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCcee
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNL  237 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l  237 (269)
                      ++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.. +..+..+++|++|
T Consensus        72 l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           72 LP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             CT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            99 999999999999999988899999999999999999999988899999999999999999864 6678999999999


Q ss_pred             eeccCcccccc---------cccceeecCCCCCCCCCCC
Q psy10547        238 TLYKNSFRGLE---------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       238 ~l~~n~~~~l~---------~~L~~L~l~~n~l~~~p~~  267 (269)
                      ++++|.+++++         ++|++|++++|+++++++.
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            99999988753         4799999999999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=1.6e-20  Score=151.69  Aligned_cols=151  Identities=21%  Similarity=0.308  Sum_probs=139.0

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      +.++++++.+..+|.+..  ..+++|++++|.++++.+..|..++             +|++|++++|.++.+.+..|..
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-------------~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-------------NLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTT
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-------------CCcEEECCCCCCCCcChhhccc
Confidence            679999999999998775  4489999999999999999999999             8899999999999999888999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL  237 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l  237 (269)
                      ++ +|++|++++|+++.+++..|..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus        87 l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           87 LT-QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CC-CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            99 99999999999999999889999999999999999999986 57899999999999999998774 68899999999


Q ss_pred             eeccCcccc
Q psy10547        238 TLYKNSFRG  246 (269)
Q Consensus       238 ~l~~n~~~~  246 (269)
                      ++++|.+..
T Consensus       165 ~l~~N~~~c  173 (229)
T 3e6j_A          165 YLFGNPWDC  173 (229)
T ss_dssp             ECTTSCBCT
T ss_pred             EeeCCCccC
Confidence            999998874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=5.1e-21  Score=171.15  Aligned_cols=117  Identities=24%  Similarity=0.319  Sum_probs=102.6

Q ss_pred             cccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 FIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                      +|+.|++++|.+++..|..+. .++ +|++|++++|.++++++  +..+++|+.|++++|.++.+++. +..+++|+.|+
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~  220 (487)
T 3oja_A          145 RVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS  220 (487)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred             CCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEE
Confidence            799999999999998888876 677 99999999999999864  44689999999999999999884 88999999999


Q ss_pred             cCCCccccccccccCcCCCceeeeccCccc--ccc------cccceeecC
Q psy10547        216 LSDNNLTLYKNSFRGLELNNNLTLYKNSFR--GLE------LSLKNLNLK  257 (269)
Q Consensus       216 L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~--~l~------~~L~~L~l~  257 (269)
                      +++|.++.+|..+..+++|+.+++++|.+.  .+|      +.++.++++
T Consensus       221 Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999999999999999999999999988  332      355566664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.9e-20  Score=157.90  Aligned_cols=167  Identities=23%  Similarity=0.346  Sum_probs=147.4

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..++.|+++++.+..++ .......|++|++++|.++++.+  +..++             +|++|++++|.++++.  .
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-------------~L~~L~L~~n~l~~~~--~  102 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-------------KITELELSGNPLKNVS--A  102 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-------------SCCEEECCSCCCSCCG--G
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCC-------------CCCEEEccCCcCCCch--h
Confidence            34799999999999886 33233349999999999999866  88888             8899999999999873  6


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN  235 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~  235 (269)
                      +..++ +|++|++++|+++.+++  +..+++|+.|++++|.++.+++  +..+++|+.|++++|.++.++. +..+++|+
T Consensus       103 ~~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  176 (308)
T 1h6u_A          103 IAGLQ-SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLT  176 (308)
T ss_dssp             GTTCT-TCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             hcCCC-CCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCC
Confidence            88888 99999999999999864  8999999999999999999875  8899999999999999998876 99999999


Q ss_pred             eeeeccCcccccc-----cccceeecCCCCCCCCCC
Q psy10547        236 NLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       236 ~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~  266 (269)
                      .|++++|.+++++     ++|++|++++|+++++++
T Consensus       177 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred             EEECCCCccCcChhhcCCCCCCEEEccCCccCcccc
Confidence            9999999998765     589999999999998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.7e-21  Score=182.74  Aligned_cols=175  Identities=16%  Similarity=0.244  Sum_probs=138.5

Q ss_pred             cCcCCCCCCcccEEEecCCCCcc-----------------cCccccc--CCccccccc--cccccc---------ccccE
Q psy10547         91 INENTFNGIFIKNLQLSHCRINS-----------------ITPNAFR--HLDAIRNIN--ENTFNG---------IFIKN  140 (269)
Q Consensus        91 l~~~~~~~~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~l~--~~~~~~---------~~L~~  140 (269)
                      +|..+....+|+.|++++|.+++                 ..|..+.  .+++|+.|+  .+.+.+         .+|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            55554444459999999999999                 2566666  999888765  233332         27899


Q ss_pred             EEcCCCC-CCc-cChhHHhhcc------ccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q psy10547        141 LQLSHCR-INS-ITPNAFRHLE------FTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL  211 (269)
Q Consensus       141 L~l~~n~-i~~-~~~~~~~~l~------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L  211 (269)
                      |++++|. +++ ..|..+..+.      ++|++|++++|.++.++. ..+..+++|+.|++++|.++.+|  .+..+++|
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L  597 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKL  597 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcc
Confidence            9999997 887 5566655442      279999999999997775 36889999999999999998777  68889999


Q ss_pred             CEEEcCCCccccccccccCcCC-CceeeeccCcccccc--------cccceeecCCCCCCCCCCC
Q psy10547        212 VTLKLSDNNLTLYKNSFRGLEL-NNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       212 ~~L~L~~n~l~~~p~~~~~l~~-L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.|++++|.++.+|..+..+++ |+.|++++|.+..+|        ++|+.|++++|++.+.+|.
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            9999999999988988999988 999999999988876        2388999999999876554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=1.2e-20  Score=148.37  Aligned_cols=124  Identities=24%  Similarity=0.424  Sum_probs=89.0

Q ss_pred             ecCCCccccCcCCCCCCcccEEEecCCCCcccCcc-cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccc
Q psy10547         83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPN-AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF  161 (269)
Q Consensus        83 l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  161 (269)
                      ++++.+..+|...+.  .+++|++++|.++++.+. .|..++             +|++|++++|.++++.|..|.++. 
T Consensus        15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-   78 (192)
T 1w8a_A           15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP-------------HLVKLELKRNQLTGIEPNAFEGAS-   78 (192)
T ss_dssp             CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT-------------TCCEEECCSSCCCCBCTTTTTTCT-
T ss_pred             cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCC-------------CCCEEECCCCCCCCcCHhHcCCcc-
Confidence            333444445544433  457777777777777654 466777             677778888888777777777777 


Q ss_pred             cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +|++|++++|+++++++..|..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            7888888888888777777777788888888888887776667777778888888888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=163.37  Aligned_cols=182  Identities=15%  Similarity=0.082  Sum_probs=89.6

Q ss_pred             ccEEEecCCCccccCcCCC--CCCc-ccEEEecCCCCcccCc----ccccCCccccccc--ccccc--------c-cccc
Q psy10547         78 LDLLYINNSAIRNINENTF--NGIF-IKNLQLSHCRINSITP----NAFRHLDAIRNIN--ENTFN--------G-IFIK  139 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~--~~~~-L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~--~~~~~--------~-~~L~  139 (269)
                      ++.|++++|.+....+..+  .... |++|++++|.+++..+    ..+..+++|++|+  .+.+.        + .+|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            6677777777665544443  3333 6777777777665333    2333455444332  11111        1 1455


Q ss_pred             EEEcCCCCCCcc---Ch-hHHhhccccccEEEccCCCCCccChh---hhcCCCCCCEEeccCCCCCCCCCCcccCC---C
Q psy10547        140 NLQLSHCRINSI---TP-NAFRHLEFTLKHLNLQENDLEQVPVE---TLRHLKNLTLIDLSKNKIGKIPDDSFSTL---N  209 (269)
Q Consensus       140 ~L~l~~n~i~~~---~~-~~~~~l~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~i~~i~~~~~~~l---~  209 (269)
                      +|++++|.+.+.   .+ ..+..++ +|++|++++|+++.++..   .+..+++|++|++++|.++.+.+..+..+   +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            555555554331   10 1112344 555555555555433321   23445555556666555555422233333   4


Q ss_pred             CCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCC
Q psy10547        210 NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLK  262 (269)
Q Consensus       210 ~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~  262 (269)
                      +|++|++++|+++.+|..+.  ++|+.|++++|+++++|     ++|++|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            55666666665555555443  45555666665555533     35555566666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.7e-21  Score=162.31  Aligned_cols=169  Identities=21%  Similarity=0.176  Sum_probs=133.1

Q ss_pred             CCCCcccEEEecCCCccccCc----C-CCCCCcccEEEecCCCCcccCcccccCCccccccc--ccccc-----------
Q psy10547         73 NTKVPLDLLYINNSAIRNINE----N-TFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN-----------  134 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~----~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~-----------  134 (269)
                      .....|+.|++++|.+.....    . .....+|++|++++|.+.++.+..|..+++|++|+  .|.+.           
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            456778889998888775322    1 22233488999999999888888888888888765  33322           


Q ss_pred             --cccccEEEcCCCCCCccChh---HHhhccccccEEEccCCCCCccChhhhcCC---CCCCEEeccCCCCCCCCCCccc
Q psy10547        135 --GIFIKNLQLSHCRINSITPN---AFRHLEFTLKHLNLQENDLEQVPVETLRHL---KNLTLIDLSKNKIGKIPDDSFS  206 (269)
Q Consensus       135 --~~~L~~L~l~~n~i~~~~~~---~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~i~~i~~~~~~  206 (269)
                        ..+|++|++++|.++.+.+.   .+..+. +|++|++++|++++..+..+..+   ++|++|++++|+++.+|.. +.
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~  271 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP  271 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc
Confidence              12799999999999865432   356778 99999999999999855556555   6999999999999999874 33


Q ss_pred             CCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc
Q psy10547        207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       207 ~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~  246 (269)
                        ++|+.|++++|+++.+|. +..+++|+.|++++|+|++
T Consensus       272 --~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 --AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             --CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence              799999999999998865 7889999999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=3e-20  Score=176.54  Aligned_cols=196  Identities=25%  Similarity=0.310  Sum_probs=162.6

Q ss_pred             ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-CcccCccc
Q psy10547         41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSITPNA  118 (269)
Q Consensus        41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~~~~~  118 (269)
                      |.|..     ..+.|. ..++..+|. +|..      ++.|++++|.+..+.+..|.... |+.|++++|. +..+.+.+
T Consensus         2 C~~~~-----~~~dcs-~~~L~~vP~-lp~~------l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~   68 (844)
T 3j0a_A            2 CSFDG-----RIAFYR-FCNLTQVPQ-VLNT------TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA   68 (844)
T ss_dssp             CBTTT-----EEEEES-CCCSSCCCS-SCTT------CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT
T ss_pred             ceEec-----eEEEcc-CCCCCCCCC-CCCC------cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH
Confidence            66653     678887 344444444 4444      59999999999999888888777 9999999994 55677889


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh--hhcCCCCCCEEeccCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNK  196 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~  196 (269)
                      |.+++             +|++|++++|.++++.|..|.++. +|++|++++|.+++..+.  .|..+++|++|++++|.
T Consensus        69 f~~L~-------------~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           69 FRNLP-------------NLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             TSSCT-------------TCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             hcCCC-------------CCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence            99999             889999999999999999999999 999999999999974333  48899999999999999


Q ss_pred             CCCCCC-CcccCCCCCCEEEcCCCcccc-ccccccCc--CCCceeeeccCcccccc-------------cccceeecCCC
Q psy10547        197 IGKIPD-DSFSTLNNLVTLKLSDNNLTL-YKNSFRGL--ELNNNLTLYKNSFRGLE-------------LSLKNLNLKNT  259 (269)
Q Consensus       197 i~~i~~-~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l--~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n  259 (269)
                      ++.+.+ ..|.++++|+.|++++|.++. .+..+..+  ++|+.|+++.|.+.+..             ..|++|++++|
T Consensus       135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence            987754 478999999999999999986 46677777  89999999999887631             12899999999


Q ss_pred             CCCC
Q psy10547        260 KLKS  263 (269)
Q Consensus       260 ~l~~  263 (269)
                      +++.
T Consensus       215 ~l~~  218 (844)
T 3j0a_A          215 GWTV  218 (844)
T ss_dssp             CSST
T ss_pred             cCch
Confidence            8775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=5.5e-20  Score=167.11  Aligned_cols=173  Identities=20%  Similarity=0.276  Sum_probs=157.5

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      ..++.++..+..+|....  ..+++|++++|.++++.+.+|.+++             +|++|++++|.++++.+.+|.+
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~i~~~~~~~   74 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-------------ELQVLDLSRCEIQTIEDGAYQS   74 (570)
T ss_dssp             TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCS-------------SCCEEECTTCCCCEECTTTTTT
T ss_pred             cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCC-------------CceEEECCCCcCCccCcccccC
Confidence            578888888999998653  3489999999999999999999999             8899999999999999999999


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN  236 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~  236 (269)
                      +. +|++|++++|+++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|.++.  +|..+.++++|++
T Consensus        75 l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           75 LS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             CT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             ch-hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            99 99999999999999998999999999999999999999988779999999999999999985  6899999999999


Q ss_pred             eeeccCcccccc-------ccc----ceeecCCCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-------LSL----KNLNLKNTKLKSVTPY  267 (269)
Q Consensus       237 l~l~~n~~~~l~-------~~L----~~L~l~~n~l~~~p~~  267 (269)
                      |++++|.+.+++       +++    +.|++++|+++.+++.
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence            999999988764       245    7899999999988765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.7e-20  Score=154.87  Aligned_cols=164  Identities=28%  Similarity=0.380  Sum_probs=101.0

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      ++.|++++|.+..++. ......|++|++++|+++++.+  +..++             +|++|++++|.++++.  .+.
T Consensus        48 L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~-------------~L~~L~l~~n~l~~~~--~l~  109 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLK-------------NLGWLFLDENKVKDLS--SLK  109 (291)
T ss_dssp             CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------------TCCEEECCSSCCCCGG--GGT
T ss_pred             ccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCC-------------CCCEEECCCCcCCCCh--hhc
Confidence            5677777777666643 2222237777777777776644  56666             5666666666666542  355


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCcee
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL  237 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l  237 (269)
                      .++ +|++|++++|+++.++  .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.+++ +..+++|+.|
T Consensus       110 ~l~-~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L  183 (291)
T 1h6t_A          110 DLK-KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  183 (291)
T ss_dssp             TCT-TCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cCC-CCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEE
Confidence            565 6666666666666652  3556666666666666666652  45666666666666666666554 6666666666


Q ss_pred             eeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547        238 TLYKNSFRGLE-----LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       238 ~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p  265 (269)
                      ++++|.+++++     ++|+.|++++|++...|
T Consensus       184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             ECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence            66666665543     35666666666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.83  E-value=7e-20  Score=144.07  Aligned_cols=120  Identities=23%  Similarity=0.391  Sum_probs=88.7

Q ss_pred             CCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccE
Q psy10547         86 SAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH  165 (269)
Q Consensus        86 ~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~  165 (269)
                      +.+..+|.+.+  ..++.|++++|.++.+. ..|..++             +|+.|++++|.++.+.+..|.++. +|++
T Consensus        20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-------------~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~   82 (193)
T 2wfh_A           20 KGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-------------HLTLIDLSNNRISTLSNQSFSNMT-QLLT   82 (193)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             CCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-------------CCCEEECCCCcCCEeCHhHccCCC-CCCE
Confidence            33444444332  13577777777777553 5677777             677788888888888777787777 7888


Q ss_pred             EEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       166 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      |++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            888888888887777888888888888888888887777777888888888888774

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=1.1e-19  Score=140.93  Aligned_cols=109  Identities=28%  Similarity=0.454  Sum_probs=88.9

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      ++.|++++|+++++.+..|..++             +|++|++++|.++.+.+..|..+. +|++|++++|+++++++..
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVFDKLT-------------QLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTT
T ss_pred             CcEEEeCCCcccEeCHHHhcCcc-------------cccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHH
Confidence            57777777777777777777777             777788888888888777777787 8888888888888888777


Q ss_pred             hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      |..+++|++|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7888888888888888888887777788888888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=172.16  Aligned_cols=58  Identities=28%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             CCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcc
Q psy10547        187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       187 L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~  244 (269)
                      |+.|++++|.+..+++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence            33333333333333333344444444444444444432 22344444444444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.82  E-value=6.4e-19  Score=150.60  Aligned_cols=183  Identities=21%  Similarity=0.371  Sum_probs=92.7

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccccccc---------c-cccccEE
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---------N-GIFIKNL  141 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~---------~-~~~L~~L  141 (269)
                      .....|+.|++++|.+..++.  +... .|++|++++|.+.++.+  +..+++|+.|+....         . ..+|++|
T Consensus        85 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           85 SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            344555666666666655532  3333 26666666666665533  445555554431111         0 0144455


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCCccCh--------------------hhhcCCCCCCEEeccCCCCCCCC
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV--------------------ETLRHLKNLTLIDLSKNKIGKIP  201 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~i~~i~  201 (269)
                      ++++|.+..+.+  +..++ +|++|++++|.+..+++                    ..+..+++|+.|++++|.++.++
T Consensus       161 ~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          161 TVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             EecCCCcCCchh--hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence            555554444432  34444 45555555555444432                    00444555555555555555554


Q ss_pred             CCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547        202 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       202 ~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p  265 (269)
                      +  +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+++     ++|++|++++|++++.+
T Consensus       238 ~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          238 P--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGG
T ss_pred             c--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcC
Confidence            3  455555666666665555542 4555566666666666555433     35666666666665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=9e-20  Score=166.99  Aligned_cols=220  Identities=18%  Similarity=0.196  Sum_probs=125.0

Q ss_pred             cCCCCCCCCcccccccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcc
Q psy10547         22 GGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFI  101 (269)
Q Consensus        22 ~~~~~cp~~~~~~~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L  101 (269)
                      ..+..|.|.+.. ..||..|.|.........+...+++.+|   ..++      ..++.|++++|.+..+|.   ...+|
T Consensus        17 ~~~~~~~~~~r~-~~~~~~~~c~~~~l~~L~ls~n~L~~lp---~~l~------~~L~~L~L~~N~l~~lp~---~l~~L   83 (622)
T 3g06_A           17 RAAPAEESRGRA-AVVQKMRACLNNGNAVLNVGESGLTTLP---DCLP------AHITTLVIPDNNLTSLPA---LPPEL   83 (622)
T ss_dssp             HTCCGGGHHHHH-HHHHHHHHHHHHCCCEEECCSSCCSCCC---SCCC------TTCSEEEECSCCCSCCCC---CCTTC
T ss_pred             hcCCcchhcccc-ccCcccccccCCCCcEEEecCCCcCccC---hhhC------CCCcEEEecCCCCCCCCC---cCCCC
Confidence            345556654433 4577788887544333333333344333   3333      457999999999998887   23448


Q ss_pred             cEEEecCCCCcccCcccccCCccccccc--cccccc-----ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCC
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~  174 (269)
                      ++|++++|+++++.+    .+++|++|+  .|.+.+     .+|+.|++++|.++.++..    ++ +|++|++++|+++
T Consensus        84 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~----l~-~L~~L~Ls~N~l~  154 (622)
T 3g06_A           84 RTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PP-GLQELSVSDNQLA  154 (622)
T ss_dssp             CEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC----CT-TCCEEECCSSCCS
T ss_pred             CEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC----CC-CCCEEECcCCcCC
Confidence            999999999988754    556666544  333333     2677888888887776541    34 7777777777777


Q ss_pred             ccChh--hhc--------------CCCCCCEEeccCCCCCCCCCCcccC-----------------CCCCCEEEcCCCcc
Q psy10547        175 QVPVE--TLR--------------HLKNLTLIDLSKNKIGKIPDDSFST-----------------LNNLVTLKLSDNNL  221 (269)
Q Consensus       175 ~~~~~--~~~--------------~l~~L~~L~l~~n~i~~i~~~~~~~-----------------l~~L~~L~L~~n~l  221 (269)
                      +++..  .+.              .+++|+.|++++|.++.++. .+..                 +++|+.|++++|.+
T Consensus       155 ~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L  233 (622)
T 3g06_A          155 SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL  233 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred             CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCCCCCCCCEEEccCCcc
Confidence            65431  111              12566666777666666553 1111                 02334444444444


Q ss_pred             ccccccccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCCC
Q psy10547        222 TLYKNSFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       222 ~~~p~~~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.+|   ..+++|+.|++++|.++.+|   ++|+.|++++|+|+.+|+.
T Consensus       234 ~~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~  279 (622)
T 3g06_A          234 TSLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES  279 (622)
T ss_dssp             SCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGG
T ss_pred             CcCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHH
Confidence            4433   22344555555555555443   3455555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=144.45  Aligned_cols=174  Identities=21%  Similarity=0.281  Sum_probs=157.8

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH  158 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  158 (269)
                      +.++++++.+..+|.....  .+++|++++|.++++.+..|..++             +|++|++++|.++.+.+..|..
T Consensus        10 ~~v~c~~~~l~~~p~~~~~--~l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELT-------------SLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTT
T ss_pred             CEEEecCCCccCCCCCCCC--CCcEEEcCCCccCcCChhhhcccc-------------cCcEEECCCCccCccChhhcCC
Confidence            6788999999999877643  579999999999999888899999             8899999999999998888889


Q ss_pred             ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547        159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL  237 (269)
Q Consensus       159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l  237 (269)
                      +. +|++|++++|+++++++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus        75 l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           75 LT-SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CC-CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            98 99999999999999998889999999999999999999998888999999999999999998776 48889999999


Q ss_pred             eeccCcccccccccceeecCCCCCCC-CCCCC
Q psy10547        238 TLYKNSFRGLELSLKNLNLKNTKLKS-VTPYW  268 (269)
Q Consensus       238 ~l~~n~~~~l~~~L~~L~l~~n~l~~-~p~~~  268 (269)
                      ++++|.+.+-.+++++|+++.|++++ +|+++
T Consensus       154 ~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          154 WLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             ECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             EecCCCeecCCCCHHHHHHHHHhCCceeeccC
Confidence            99999998865699999999999995 66654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=161.84  Aligned_cols=118  Identities=19%  Similarity=0.318  Sum_probs=91.6

Q ss_pred             CcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccccc------cccccEEEcCCC
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN------GIFIKNLQLSHC  146 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~------~~~L~~L~l~~n  146 (269)
                      ..++.|++++|.+..++++.|.... |++|++++|+++++.|.+|.++++|++|+  .|.+.      ..+|++|++++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N  100 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN  100 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence            4568899999998888876666665 89999999999988888888888888665  23332      237889999999


Q ss_pred             CCCcc-ChhHHhhccccccEEEccCCCCCccChhhhcCCCCC--CEEeccCCCC
Q psy10547        147 RINSI-TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL--TLIDLSKNKI  197 (269)
Q Consensus       147 ~i~~~-~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i  197 (269)
                      .++++ .|..|..+. +|++|++++|.+++.   .+..+++|  +.|++++|.+
T Consensus       101 ~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          101 AFDALPICKEFGNMS-QLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSSCCCCGGGGGCT-TCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             ccccccchhhhccCC-cceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence            98875 467888888 899999999888763   35666666  8888888777

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=2.3e-18  Score=152.70  Aligned_cols=177  Identities=17%  Similarity=0.216  Sum_probs=115.8

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccc--cccccc------ccccEEE
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------IFIKNLQ  142 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~  142 (269)
                      +.....|+.|++++|.+..++   +... .|++|++++|.++++.   +..+++|++|+  .+.+.+      .+|++|+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~  133 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN  133 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred             hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeecCCCCCcCCEEE
Confidence            345566788888888888875   3333 3888888888888862   67777666554  233222      2677777


Q ss_pred             cCCCCCCccChhHHhhccccccEEEccCCC-CCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        143 LSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       143 l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      +++|.++++.   +..++ +|++|++++|+ +..+   .+..+++|+.|++++|.++.++   +..+++|+.|++++|.+
T Consensus       134 l~~N~l~~l~---l~~l~-~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          134 CARNTLTEID---VSHNT-QLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CTTSCCSCCC---CTTCT-TCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred             CCCCccceec---cccCC-cCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcC
Confidence            7777777652   45555 66666666663 3333   2556667777777777776664   45666677777777777


Q ss_pred             ccccccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCCCC
Q psy10547        222 TLYKNSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       222 ~~~p~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p~  266 (269)
                      +.++  +..+++|+.|++++|+++++|    ++|+.|++++|+++++|+
T Consensus       204 ~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          204 TKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             SCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred             Ceec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence            6653  666677777777777666654    466777777777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=2.1e-19  Score=162.67  Aligned_cols=167  Identities=25%  Similarity=0.358  Sum_probs=145.7

Q ss_pred             cCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccc
Q psy10547         84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL  163 (269)
Q Consensus        84 ~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L  163 (269)
                      +++.+..+|.+.+  ..+++|++++|+++++.+.+|.+++             +|++|++++|.++++.+.+|..+. +|
T Consensus        13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~~~~~~~~~l~-~L   76 (549)
T 2z81_A           13 RSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-------------NLQVLILKSSRINTIEGDAFYSLG-SL   76 (549)
T ss_dssp             TTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-------------TCCEEECTTSCCCEECTTTTTTCT-TC
T ss_pred             CCCccccccccCC--CCccEEECcCCccCccChhhhhcCC-------------cccEEECCCCCcCccChhhccccc-cC
Confidence            3455667777665  3589999999999999999999999             889999999999999999999999 99


Q ss_pred             cEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCCCc-ccccc-ccccCcCCCceeeec
Q psy10547        164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNN-LTLYK-NSFRGLELNNNLTLY  240 (269)
Q Consensus       164 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~p-~~~~~l~~L~~l~l~  240 (269)
                      ++|++++|.++++++..|..+++|++|++++|.++.++ +..+..+++|++|++++|. +..+| ..+..+++|++|+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            99999999999999998999999999999999998653 3478999999999999998 66676 589999999999999


Q ss_pred             cCcccccc-------cccceeecCCCCCCCCCC
Q psy10547        241 KNSFRGLE-------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       241 ~n~~~~l~-------~~L~~L~l~~n~l~~~p~  266 (269)
                      +|.+.+..       ++|++|++++|.+..+|+
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  189 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE  189 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred             CCcccccChhhhhccccCceEecccCcccccch
Confidence            99888632       479999999999876553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.1e-18  Score=149.25  Aligned_cols=184  Identities=18%  Similarity=0.293  Sum_probs=104.6

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEc
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQL  143 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l  143 (269)
                      .....|+.+++++|..............|++|++++|.+..+.+  +..+++|+.|+  .+.+..       .+++.+++
T Consensus       129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  206 (347)
T 4fmz_A          129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA  206 (347)
T ss_dssp             TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred             ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeec
Confidence            35555677777766432222222222336666666666665543  55555555443  111111       15666666


Q ss_pred             CCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547        144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       144 ~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      ++|.+++..+  +..++ +|++|++++|+++.+++  +..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.
T Consensus       207 ~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          207 YVNQITDITP--VANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCC
Confidence            6666665543  55555 66666666666666654  566666666666666666653  35566666666666666665


Q ss_pred             ccccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547        224 YKNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       224 ~p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~  266 (269)
                      ++ .+..+++|+.|++++|.+.+.+       ++|++|++++|++++++|
T Consensus       280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            53 4566666666666666655432       356666666666666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=8.3e-19  Score=155.99  Aligned_cols=182  Identities=22%  Similarity=0.353  Sum_probs=92.0

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEE
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQ  142 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~  142 (269)
                      +.....|+.|++++|.+..++. ......|++|++++|.+.++.+  +..+++|+.|+  .+.+..       .+|++|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  249 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD  249 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence            3455667777777777666543 2122236777777777666544  44555555443  221111       1455666


Q ss_pred             cCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       143 l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +++|.+++..+  +..++ +|++|++++|.++++++  +..+++|+.|++++|.++.+++  +..+++|+.|++++|.++
T Consensus       250 l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          250 LANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             CCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence            66665555533  44454 55555555555555443  4455555555555555554443  444455555555555554


Q ss_pred             cccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCC
Q psy10547        223 LYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       223 ~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~  264 (269)
                      .+++ +..+++|+.|++++|.+.+++     ++|+.|++++|+++++
T Consensus       323 ~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          323 DISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             Cchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCcc
Confidence            4332 444444444444444444322     2344444444444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=8.6e-19  Score=157.75  Aligned_cols=168  Identities=14%  Similarity=0.204  Sum_probs=127.4

Q ss_pred             ccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC--hh
Q psy10547         78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT--PN  154 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~--~~  154 (269)
                      ++.|++++|.+..++.  +... .|++|++++|++++..+..+..++             +|+.|++++|.++++.  |.
T Consensus       304 L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLT-------------ELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCS-------------SCCEEECCSSCCCBHHHHHH
T ss_pred             eeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCC-------------CCCEEEccCCccCccccchH
Confidence            4555555555443321  1222 378888888888877777777777             7888999999888743  46


Q ss_pred             HHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547        155 AFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL  233 (269)
Q Consensus       155 ~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~  233 (269)
                      .+..++ +|++|++++|++++ ++...+..+++|+.|++++|.+++..+..+.  ++|+.|++++|+++.+|..+..+++
T Consensus       369 ~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~  445 (520)
T 2z7x_B          369 MTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEA  445 (520)
T ss_dssp             HHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred             HHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCC
Confidence            678888 89999999999888 7766678888999999999988654433332  6899999999999988888888999


Q ss_pred             CceeeeccCcccccc-------cccceeecCCCCCCC
Q psy10547        234 NNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       234 L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~  263 (269)
                      |+.|++++|.++.+|       ++|++|++++|+++.
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            999999999888766       368889999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=5.9e-19  Score=161.30  Aligned_cols=164  Identities=29%  Similarity=0.383  Sum_probs=87.8

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      |+.|+++++.+..++. +.....|+.|++++|.+.++.+  +..++             +|+.|+|++|.++.+.  .+.
T Consensus        45 L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-------------~L~~L~Ls~N~l~~l~--~l~  106 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLK-------------NLGWLFLDENKIKDLS--SLK  106 (605)
T ss_dssp             CCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCT-------------TCCEEECCSSCCCCCT--TST
T ss_pred             CCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCC-------------CCCEEECcCCCCCCCh--hhc
Confidence            4556666666555542 2122236666666666665543  45555             4555555555555542  344


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCcee
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL  237 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l  237 (269)
                      .++ +|++|++++|.+..++  .+..+++|+.|++++|.++.+  ..+..+++|+.|+|++|.++.+++ +..+++|+.|
T Consensus       107 ~l~-~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L  180 (605)
T 1m9s_A          107 DLK-KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  180 (605)
T ss_dssp             TCT-TCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cCC-CCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE
Confidence            555 5555555555555542  255555555555555555555  135555555555555555555443 5555555555


Q ss_pred             eeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547        238 TLYKNSFRGLE-----LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       238 ~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p  265 (269)
                      ++++|.+.+++     ++|+.|+|++|++...|
T Consensus       181 ~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          181 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred             ECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence            55555555443     35555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=7.4e-19  Score=159.79  Aligned_cols=123  Identities=15%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             cccEEEcCCCCCCccC--hhHHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCE
Q psy10547        137 FIKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT  213 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~--~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~  213 (269)
                      +|+.|++++|.++++.  |..|..++ +|++|++++|++++ ++...+..+++|+.|++++|.+++..+..+.  ++|+.
T Consensus       378 ~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~  454 (562)
T 3a79_B          378 RLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV  454 (562)
T ss_dssp             SCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred             CCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence            4444444444444433  12344444 44555555544444 4433344444444555544444322211111  34555


Q ss_pred             EEcCCCccccccccccCcCCCceeeeccCcccccc-------cccceeecCCCCCC
Q psy10547        214 LKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLK  262 (269)
Q Consensus       214 L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~  262 (269)
                      |++++|+++.+|..+..+++|+.|++++|+++.+|       ++|+.|++++|++.
T Consensus       455 L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             EECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             EECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            55555555555444445555555555555444433       23444555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=6.8e-19  Score=138.78  Aligned_cols=150  Identities=19%  Similarity=0.280  Sum_probs=103.3

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      .++.|++++|.+.+++ ......+|++|++++|.+..+  ..+..++             +|++|++++|.+++..+..|
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-------------~L~~L~l~~n~l~~~~~~~l  108 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-------------NLERLRIMGKDVTSDKIPNL  108 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-------------TCCEEEEECTTCBGGGSCCC
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-------------CCCEEEeECCccCcccChhh
Confidence            3677888888777776 333333478888888766544  2566666             67778888887777656667


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN  235 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~  235 (269)
                      ..++ +|++|++++|+++...+..+..+++|+.|++++|. ++.++  .+..+++|+.|++++|.++.++ .+..+++|+
T Consensus       109 ~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~  184 (197)
T 4ezg_A          109 SGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN  184 (197)
T ss_dssp             TTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred             cCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence            7777 78888888888777666667777888888888886 67665  4677777888888888777766 566666666


Q ss_pred             eeeeccCcccc
Q psy10547        236 NLTLYKNSFRG  246 (269)
Q Consensus       236 ~l~l~~n~~~~  246 (269)
                      .|++++|+|.+
T Consensus       185 ~L~l~~N~i~~  195 (197)
T 4ezg_A          185 QLYAFSQTIGG  195 (197)
T ss_dssp             EEEECBC----
T ss_pred             EEEeeCcccCC
Confidence            66666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.6e-18  Score=157.12  Aligned_cols=153  Identities=16%  Similarity=0.235  Sum_probs=126.8

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..|+.|++++|.+..+| ..  ..+|++|++++|.+++++.  +..               +|++|++++|.++++++  
T Consensus        80 ~~L~~L~Ls~N~l~~ip-~~--l~~L~~L~Ls~N~l~~ip~--l~~---------------~L~~L~Ls~N~l~~lp~--  137 (571)
T 3cvr_A           80 PQITVLEITQNALISLP-EL--PASLEYLDACDNRLSTLPE--LPA---------------SLKHLDVDNNQLTMLPE--  137 (571)
T ss_dssp             TTCSEEECCSSCCSCCC-CC--CTTCCEEECCSSCCSCCCC--CCT---------------TCCEEECCSSCCSCCCC--
T ss_pred             CCCCEEECcCCCCcccc-cc--cCCCCEEEccCCCCCCcch--hhc---------------CCCEEECCCCcCCCCCC--
Confidence            34799999999999888 32  2348999999999998644  433               58889999999999755  


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCC-
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELN-  234 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L-  234 (269)
                        .++ +|++|++++|++++++.    .+++|+.|++++|.++.++.  +.  ++|+.|++++|.|+.+|. +..  +| 
T Consensus       138 --~l~-~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~  203 (571)
T 3cvr_A          138 --LPA-LLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV--RNH  203 (571)
T ss_dssp             --CCT-TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC------
T ss_pred             --cCc-cccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH--hhh
Confidence              466 89999999999999875    57899999999999999886  55  899999999999999888 655  77 


Q ss_pred             ------ceeeeccCcccccc------cccceeecCCCCCCCC
Q psy10547        235 ------NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       235 ------~~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~  264 (269)
                            +.|++++|.|+.+|      ++|+.|++++|++++.
T Consensus       204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             cccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence                  99999999999887      4799999999999863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=3.2e-18  Score=151.78  Aligned_cols=175  Identities=21%  Similarity=0.252  Sum_probs=139.9

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc------ccccEEEcCCC
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHC  146 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n  146 (269)
                      ...++.|++++|.+..++ +......|++|++++|.++++.   +..+++|++|+  .+.+.+      .+|++|++++|
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN  116 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence            455799999999999986 3333344999999999999973   78888877654  333333      27888888888


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCcccccc
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTLYK  225 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~p  225 (269)
                      .+++++   +..++ +|++|++++|++++++   +..+++|+.|++++|. +..+   .+..+++|+.|++++|.++.+|
T Consensus       117 ~l~~l~---~~~l~-~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          117 KLTKLD---VSQNP-LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             CCSCCC---CTTCT-TCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCeec---CCCCC-cCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec
Confidence            888763   66777 8888888888888874   6778888888888884 4555   3677889999999999999887


Q ss_pred             ccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCCC
Q psy10547        226 NSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       226 ~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p  265 (269)
                        +..+++|+.|++++|.+++++    ++|++|++++|+++++|
T Consensus       187 --l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred             --cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC
Confidence              888999999999999888754    58999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=1e-19  Score=150.09  Aligned_cols=149  Identities=24%  Similarity=0.328  Sum_probs=115.2

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN  154 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~  154 (269)
                      ...++.|++++|.+..++ .......|++|++++|+++++.+  +..++             +|++|++++|.++++.+-
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-------------~L~~L~L~~N~l~~l~~~  103 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-------------KLEELSVNRNRLKNLNGI  103 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-------------SCCEEECCSSCCSCCTTC
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCC-------------CCCEEECCCCccCCcCcc
Confidence            345788888888888877 32233348888888888888765  77777             778888888888886542


Q ss_pred             HHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCC
Q psy10547        155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELN  234 (269)
Q Consensus       155 ~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L  234 (269)
                        .. . +|++|++++|++++++  .+..+++|+.|++++|+++.++  .+..+++|+.|++++|.++.+ ..+..+++|
T Consensus       104 --~~-~-~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L  174 (263)
T 1xeu_A          104 --PS-A-CLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV  174 (263)
T ss_dssp             --CC-S-SCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred             --cc-C-cccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence              22 5 7888888888888874  3788888888888888888875  477888888888888888877 667888888


Q ss_pred             ceeeeccCcccccc
Q psy10547        235 NNLTLYKNSFRGLE  248 (269)
Q Consensus       235 ~~l~l~~n~~~~l~  248 (269)
                      +.|++++|.+...|
T Consensus       175 ~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          175 NWIDLTGQKCVNEP  188 (263)
T ss_dssp             CEEEEEEEEEECCC
T ss_pred             CEEeCCCCcccCCc
Confidence            88888888887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=3.5e-18  Score=151.90  Aligned_cols=185  Identities=24%  Similarity=0.342  Sum_probs=147.6

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEc
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQL  143 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l  143 (269)
                      .....|+.|++++|.+..+++ ......|++|++++|.++++  ..+..+++|+.|+  .+.+.+       .+|+.|++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  272 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  272 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence            345667888888888777655 22223378888888887775  2466777777654  222222       27999999


Q ss_pred             CCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547        144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       144 ~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      ++|.++++.+  +..++ +|++|++++|+++++++  +..+++|+.|++++|.++++++  +..+++|+.|++++|.++.
T Consensus       273 ~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          273 GANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            9999998865  77888 99999999999999875  8889999999999999998876  7789999999999999998


Q ss_pred             ccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCCCCCC
Q psy10547        224 YKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       224 ~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~~~  268 (269)
                      ++ .+..+++|+.|++++|++.+++     ++|+.|++++|+++++|..+
T Consensus       346 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          346 VS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECCCBCC
T ss_pred             ch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCCchhh
Confidence            74 7889999999999999988754     58999999999999977653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.4e-18  Score=155.91  Aligned_cols=138  Identities=15%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..|+.|++++|.+..+|.  +.. +|++|++++|.++++++    .++             +|+.|++++|.+++++.  
T Consensus       100 ~~L~~L~Ls~N~l~~ip~--l~~-~L~~L~Ls~N~l~~lp~----~l~-------------~L~~L~Ls~N~l~~lp~--  157 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPE--LPA-SLKHLDVDNNQLTMLPE----LPA-------------LLEYINADNNQLTMLPE--  157 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSCCCC----CCT-------------TCCEEECCSSCCSCCCC--
T ss_pred             CCCCEEEccCCCCCCcch--hhc-CCCEEECCCCcCCCCCC----cCc-------------cccEEeCCCCccCcCCC--
Confidence            345556666666555555  222 45666666666555433    233             45556666666555433  


Q ss_pred             HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCC-------CEEEcCCCccccccccc
Q psy10547        156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL-------VTLKLSDNNLTLYKNSF  228 (269)
Q Consensus       156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L-------~~L~L~~n~l~~~p~~~  228 (269)
                        .++ +|++|++++|++++++.  |.  ++|+.|++++|.++.+|.  +..  +|       +.|++++|.|+.+|..+
T Consensus       158 --~l~-~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l  226 (571)
T 3cvr_A          158 --LPT-SLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENI  226 (571)
T ss_dssp             --CCT-TCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGG
T ss_pred             --cCC-CcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHH
Confidence              233 56666666666555543  33  556666666666555554  222  44       56666666666555555


Q ss_pred             cCcCCCceeeeccCcccc
Q psy10547        229 RGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       229 ~~l~~L~~l~l~~n~~~~  246 (269)
                      ..+++|+.|++++|.+++
T Consensus       227 ~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             GGSCTTEEEECCSSSCCH
T ss_pred             hcCCCCCEEEeeCCcCCC
Confidence            556666666666665544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=9.9e-18  Score=148.55  Aligned_cols=172  Identities=16%  Similarity=0.287  Sum_probs=116.4

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--ccccccc-----cccEEEcCCCCCC
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI-----FIKNLQLSHCRIN  149 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~-----~L~~L~l~~n~i~  149 (269)
                      .++.|++++|.+..++...   ..|++|++++|++++++  .|..+++|++|+  .+.+.+.     +|++|++++|.++
T Consensus       112 ~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~  186 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE  186 (454)
T ss_dssp             TCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCC
Confidence            4567777777666655321   34788888888888754  478888777554  3333332     6777777777777


Q ss_pred             ccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccccc
Q psy10547        150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR  229 (269)
Q Consensus       150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~  229 (269)
                      +++  .+..++ +|++|++++|++++++..    .++|+.|++++|.++.++.  +..+++|+.|++++|+++.+|..  
T Consensus       187 ~l~--~~~~l~-~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~--  255 (454)
T 1jl5_A          187 ELP--ELQNLP-FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL--  255 (454)
T ss_dssp             SCC--CCTTCT-TCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC--
T ss_pred             cCc--cccCCC-CCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc--
Confidence            753  466776 777777777777776532    2477777777777777663  66777788888888877776643  


Q ss_pred             CcCCCceeeeccCcccccc---cccceeecCCCCCCCCC
Q psy10547        230 GLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       230 ~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p  265 (269)
                       .++|+.|++++|.+.++|   ++|++|++++|+++++|
T Consensus       256 -~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          256 -PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             -CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEES
T ss_pred             -ccccCEEECCCCcccccCcccCcCCEEECcCCccCccc
Confidence             366777777777776654   46777777777777643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1e-18  Score=137.82  Aligned_cols=144  Identities=19%  Similarity=0.266  Sum_probs=124.1

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      |+.|++++|.++.+.  .+..++             +|++|++++|.++.+  ..+..++ +|++|++++|+++...+..
T Consensus        46 L~~L~l~~n~i~~l~--~l~~l~-------------~L~~L~l~~n~~~~~--~~l~~l~-~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           46 LTYITLANINVTDLT--GIEYAH-------------NIKDLTINNIHATNY--NPISGLS-NLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             CCEEEEESSCCSCCT--TGGGCT-------------TCSEEEEESCCCSCC--GGGTTCT-TCCEEEEECTTCBGGGSCC
T ss_pred             ccEEeccCCCccChH--HHhcCC-------------CCCEEEccCCCCCcc--hhhhcCC-CCCEEEeECCccCcccChh
Confidence            899999999999765  577788             889999999988766  3688888 9999999999999866667


Q ss_pred             hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCc-cccccccccCcCCCceeeeccCcccccc-----ccccee
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-LTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNL  254 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L  254 (269)
                      +..+++|++|++++|.++...+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++++     ++|++|
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L  186 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL  186 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEE
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEE
Confidence            9999999999999999987555678999999999999998 88887 7999999999999999888763     589999


Q ss_pred             ecCCCCCCC
Q psy10547        255 NLKNTKLKS  263 (269)
Q Consensus       255 ~l~~n~l~~  263 (269)
                      ++++|+|.+
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.1e-17  Score=139.94  Aligned_cols=152  Identities=24%  Similarity=0.374  Sum_probs=133.0

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT  152 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~  152 (269)
                      .....|+.|++++|.+..++. ......|++|++++|.++++.  .+..++             +|++|++++|.++++ 
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~-------------~L~~L~L~~n~i~~~-  127 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLK-------------KLKSLSLEHNGISDI-  127 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCT-------------TCCEEECTTSCCCCC-
T ss_pred             hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--hhccCC-------------CCCEEECCCCcCCCC-
Confidence            355678999999999999887 333344999999999999863  377788             889999999999987 


Q ss_pred             hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547        153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE  232 (269)
Q Consensus       153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~  232 (269)
                       ..+..++ +|++|++++|+++.+  ..+..+++|+.|++++|.++.+++  +..+++|+.|++++|.++.++. +..++
T Consensus       128 -~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~  200 (291)
T 1h6t_A          128 -NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLK  200 (291)
T ss_dssp             -GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred             -hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCC
Confidence             4688888 999999999999998  458999999999999999999876  8899999999999999999874 89999


Q ss_pred             CCceeeeccCcccccc
Q psy10547        233 LNNNLTLYKNSFRGLE  248 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~  248 (269)
                      +|+.|++++|++...|
T Consensus       201 ~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          201 NLDVLELFSQECLNKP  216 (291)
T ss_dssp             TCSEEEEEEEEEECCC
T ss_pred             CCCEEECcCCcccCCc
Confidence            9999999999988754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=6e-18  Score=145.02  Aligned_cols=170  Identities=19%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             ceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCc-cccCcCCCCCCc-c-cEEEecCCCCcccCcccccCCcccc
Q psy10547         50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAI-RNINENTFNGIF-I-KNLQLSHCRINSITPNAFRHLDAIR  126 (269)
Q Consensus        50 ~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i-~~l~~~~~~~~~-L-~~L~l~~n~l~~~~~~~~~~l~~L~  126 (269)
                      ...+..+.++.+|      +..+.+...|+.|++++|.+ +.++.++|.... + +.+.+.+|+++.+.+.+|..+++|+
T Consensus        34 ~L~Ls~N~i~~i~------~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           34 ELRFVLTKLRVIQ------KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             EEEEESCCCSEEC------TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             EEEccCCcCCCcC------HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            3445555444433      23456778899999999996 568889988775 4 5577888999999999999999665


Q ss_pred             ccc--ccccc---------cccccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547        127 NIN--ENTFN---------GIFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK  194 (269)
Q Consensus       127 ~l~--~~~~~---------~~~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  194 (269)
                      +|+  .+.+.         ..++..+++.+ +.+..+.+..|..+...++.|++++|+++.+++..|. ..+|+.+++++
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~  186 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSD  186 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTT
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhcc
Confidence            443  11111         11344444432 3555555555544432455555555555555544443 23455555542


Q ss_pred             -CCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547        195 -NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       195 -n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~  226 (269)
                       |.++.+++++|..+++|+.|++++|+|+.+|.
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             CCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence             45555555555555555555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=2.2e-17  Score=146.31  Aligned_cols=172  Identities=19%  Similarity=0.298  Sum_probs=129.1

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEcCCCC
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQLSHCR  147 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l~~n~  147 (269)
                      .++.|++++|.+..+|...   ..|++|++++|+++++...    .++|++|+  .+.+.+       .+|++|++++|.
T Consensus        92 ~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           92 HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             TCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc
Confidence            4699999999999887532   4489999999999886432    14455433  222221       267788888887


Q ss_pred             CCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547        148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS  227 (269)
Q Consensus       148 i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~  227 (269)
                      +++++. .   .. +|++|++++|++++++  .+..+++|+.|++++|.+++++..    ..+|+.|++++|.++.+| .
T Consensus       165 l~~lp~-~---~~-~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~  232 (454)
T 1jl5_A          165 LKKLPD-L---PP-SLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-E  232 (454)
T ss_dssp             CSCCCC-C---CT-TCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-C
T ss_pred             CcccCC-C---cc-cccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-c
Confidence            776532 1   23 6888888888888765  377888888888888888877642    257888999999888888 4


Q ss_pred             ccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCCC
Q psy10547        228 FRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       228 ~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~~  267 (269)
                      +..+++|+.|++++|.++++|   ++|++|++++|+++++|+.
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~  275 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL  275 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC
T ss_pred             cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc
Confidence            889999999999999988765   6899999999999988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=3.3e-18  Score=147.28  Aligned_cols=177  Identities=19%  Similarity=0.219  Sum_probs=97.0

Q ss_pred             CCCcccEEEecCCCccccCc----CCCCCC--cccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEE
Q psy10547         74 TKVPLDLLYINNSAIRNINE----NTFNGI--FIKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQ  142 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~----~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~  142 (269)
                      ....++.|++++|.+..++.    +.+...  .|++|++++|.++...+..+..+     +             +|++|+
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-------------~L~~L~   86 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-------------NVTSLN   86 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-------------TCCEEE
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-------------CccEEE
Confidence            44447888888888888776    444433  48888888888888777666654     5             455555


Q ss_pred             cCCCCCCccChhHHhhc-----cccccEEEccCCCCCccChhhhc----C-CCCCCEEeccCCCCCCCCCC----cccCC
Q psy10547        143 LSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPVETLR----H-LKNLTLIDLSKNKIGKIPDD----SFSTL  208 (269)
Q Consensus       143 l~~n~i~~~~~~~~~~l-----~~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~i~~i~~~----~~~~l  208 (269)
                      +++|.+++..+..+...     . +|++|++++|+++......+.    . .++|++|++++|.++.....    .+...
T Consensus        87 Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~  165 (362)
T 3goz_A           87 LSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI  165 (362)
T ss_dssp             CCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred             CcCCcCChHHHHHHHHHHHhCCC-CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence            55555555554433332     3 555555555555555443322    2 23555555555555432221    12233


Q ss_pred             C-CCCEEEcCCCcccccc-c----cccCc-CCCceeeeccCcccc-----cc-------cccceeecCCCCCCCC
Q psy10547        209 N-NLVTLKLSDNNLTLYK-N----SFRGL-ELNNNLTLYKNSFRG-----LE-------LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       209 ~-~L~~L~L~~n~l~~~p-~----~~~~l-~~L~~l~l~~n~~~~-----l~-------~~L~~L~l~~n~l~~~  264 (269)
                      + +|++|++++|.++... .    .+..+ ++|+.|++++|.+.+     ++       ++|++|++++|+++..
T Consensus       166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            2 5555555555554322 1    22333 355555555555554     11       2455555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=1.5e-17  Score=137.02  Aligned_cols=163  Identities=19%  Similarity=0.272  Sum_probs=120.6

Q ss_pred             ccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      +..++++++.+.+++  .+... .|++|++++|.++.+.  .+..++             +|+.|++++|.++++.+  +
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~-------------~L~~L~L~~N~i~~~~~--l   81 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFT-------------NLKELHLSHNQISDLSP--L   81 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCT-------------TCCEEECCSSCCCCCGG--G
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCC-------------CCCEEECCCCccCCChh--h
Confidence            455667777777766  23333 3788888888887764  466666             67778888888888765  7


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCce
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN  236 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~  236 (269)
                      ..++ +|++|++++|++++++.  +.. ++|+.|++++|.++.++  .+..+++|+.|++++|+++.++ .+..+++|+.
T Consensus        82 ~~l~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~  154 (263)
T 1xeu_A           82 KDLT-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEV  154 (263)
T ss_dssp             TTCS-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCE
T ss_pred             ccCC-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCE
Confidence            7777 88888888888887764  333 78888888888887774  4777888888888888888776 6777888888


Q ss_pred             eeeccCcccccc-----cccceeecCCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       237 l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~  266 (269)
                      |++++|.+++++     ++|+.|++++|++...|.
T Consensus       155 L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          155 LDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             EECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             EECCCCcCcchHHhccCCCCCEEeCCCCcccCCcc
Confidence            888888776643     477888888888776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=9.7e-17  Score=146.94  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=93.4

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-----ccccEEEcCCCCCCc
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----IFIKNLQLSHCRINS  150 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----~~L~~L~l~~n~i~~  150 (269)
                      ++.++++++.+..+|...+  .+|+.|++++|.++.+.+    .+++|+.|+  .|.+..     .+|++|++++|.++.
T Consensus        42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC
T ss_pred             CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC
Confidence            5899999999999998876  458999999999998765    456666543  333332     267888888888877


Q ss_pred             cChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCC-----------------CCCCE
Q psy10547        151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL-----------------NNLVT  213 (269)
Q Consensus       151 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l-----------------~~L~~  213 (269)
                      ++.    .+. +|+.|++++|+++.++..    +++|++|++++|.++.++. .+..+                 ++|+.
T Consensus       116 l~~----~l~-~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~  185 (622)
T 3g06_A          116 LPA----LPS-GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGLQE  185 (622)
T ss_dssp             CCC----CCT-TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCC----CCC-CcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccCCCCcE
Confidence            654    344 788888888888877642    4778888888888777654 22211                 45566


Q ss_pred             EEcCCCccccccc
Q psy10547        214 LKLSDNNLTLYKN  226 (269)
Q Consensus       214 L~L~~n~l~~~p~  226 (269)
                      |++++|.++.+|.
T Consensus       186 L~Ls~N~l~~l~~  198 (622)
T 3g06_A          186 LSVSDNQLASLPT  198 (622)
T ss_dssp             EECCSSCCSCCCC
T ss_pred             EECCCCCCCCCCC
Confidence            6666666655543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=1.4e-17  Score=127.81  Aligned_cols=128  Identities=25%  Similarity=0.301  Sum_probs=64.0

Q ss_pred             ccEEEecCCCCc-ccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        101 IKNLQLSHCRIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       101 L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      +++|++++|.++ +..|..+..++             +|++|++++|.++.+  ..+..++ +|++|++++|++++..+.
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~-------------~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~   89 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFV-------------NLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDM   89 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGG-------------GCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCH
T ss_pred             CCEEECCCCCCChhhHHHHHHhCC-------------CCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHH
Confidence            455555555554 22233344444             455555555555554  3444454 555555555555554344


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccccccc----cccCcCCCceeeeccCcc
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~l~~n~~  244 (269)
                      .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|.+
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            44445555555555555555432 345555555666665555555443    344444333333333333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.72  E-value=3.5e-17  Score=125.94  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=60.9

Q ss_pred             EEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhcc
Q psy10547         81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE  160 (269)
Q Consensus        81 l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  160 (269)
                      ++++++.+..+|...+  ..+++|++++|+++++.+..|.+++             +|++|++++|.++++.+..|..++
T Consensus        14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-------------QLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcc-------------cCCEEECCCCCcCccChhhccCCC
Confidence            3444444555554442  2356666666666666666666666             556666666666666665555555


Q ss_pred             ccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547        161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI  200 (269)
Q Consensus       161 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i  200 (269)
                       +|++|++++|+++++++..|..+++|+.|++++|.+...
T Consensus        79 -~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           79 -QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence             566666666666666555555566666666666655433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.9e-19  Score=162.29  Aligned_cols=170  Identities=17%  Similarity=0.174  Sum_probs=113.2

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCC-------------CcccCcccccCCcccccccccc-------
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR-------------INSITPNAFRHLDAIRNINENT-------  132 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~l~~~~-------  132 (269)
                      .....++.|++++|.+..+|..+.....|+.|++++|.             +.+..|..+..+++|+.|+.-.       
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34556778888888888888777665568888876654             4555566677777666655111       


Q ss_pred             ---------cc---cccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547        133 ---------FN---GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI  200 (269)
Q Consensus       133 ---------~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i  200 (269)
                               +.   ...++.|++++|.+++++ . |..+. +|+.|++++|.++.+|. .+..+++|+.|++++|.++++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~-~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLL-LVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGT-TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccc-cCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCC
Confidence                     11   114666777777777653 2 66666 77777777777776653 567777777777777777766


Q ss_pred             CCCcccCCCCCCEEEcCCCccccc--cccccCcCCCceeeeccCcccccc
Q psy10547        201 PDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGLELNNNLTLYKNSFRGLE  248 (269)
Q Consensus       201 ~~~~~~~l~~L~~L~L~~n~l~~~--p~~~~~l~~L~~l~l~~n~~~~l~  248 (269)
                      |  .+..+++|+.|+|++|.++.+  |..+..+++|+.|++++|.++++|
T Consensus       502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            5  466777777777777777765  666777777777777777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=1e-16  Score=125.85  Aligned_cols=127  Identities=17%  Similarity=0.292  Sum_probs=113.3

Q ss_pred             cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL  181 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~  181 (269)
                      +.++++++.++.++...+   +             +++.|++++|.++.++ ..|..+. +|++|++++|.++.+++..|
T Consensus        13 ~~l~~~~~~l~~ip~~~~---~-------------~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---R-------------DVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---T-------------TCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             CEEEcCCCCCCcCCCCCC---C-------------CCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHc
Confidence            467888999888754322   3             6889999999999876 6899999 99999999999999999999


Q ss_pred             cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccc
Q psy10547        182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~  246 (269)
                      ..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.+..
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999999999999899999999999999999998876 58899999999999998853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=6.5e-17  Score=126.91  Aligned_cols=128  Identities=24%  Similarity=0.350  Sum_probs=114.9

Q ss_pred             cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh-HHhhccccccEEEccCCCCCccChhh
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      +.++++++.++.++...+   .             +++.|++++|.++++.+. .|..++ +|++|++++|+++++.+..
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~-------------~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~   73 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---L-------------HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---T-------------TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTT
T ss_pred             CEEEcCCCCcCcCccCCC---C-------------CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhH
Confidence            688999999988754322   2             578899999999999875 488898 9999999999999998889


Q ss_pred             hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccc
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~  246 (269)
                      |..+++|+.|++++|+++.+++..|..+++|++|++++|+++.+ |..+..+++|+.|++++|.|..
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999999999999999999988899999999999999999975 7789999999999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=1.3e-16  Score=123.52  Aligned_cols=110  Identities=25%  Similarity=0.427  Sum_probs=101.9

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      +++.|++++|.++++.+..|..+. +|++|++++|+++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            688999999999999888888998 9999999999999999888999999999999999999999888899999999999


Q ss_pred             CCCcccccccc-ccCcCCCceeeeccCccccc
Q psy10547        217 SDNNLTLYKNS-FRGLELNNNLTLYKNSFRGL  247 (269)
Q Consensus       217 ~~n~l~~~p~~-~~~l~~L~~l~l~~n~~~~l  247 (269)
                      ++|.++.+|.. +..+++|++|++++|.+...
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999988765 57899999999999998764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=2.3e-18  Score=149.48  Aligned_cols=199  Identities=15%  Similarity=0.205  Sum_probs=135.3

Q ss_pred             hhhhhhccCCCCcccEEEecCCCccccCc----CC-------CCCCcccEEEecCCCCcc----cCcccccCCccccccc
Q psy10547         65 KATLNKHVNTKVPLDLLYINNSAIRNINE----NT-------FNGIFIKNLQLSHCRINS----ITPNAFRHLDAIRNIN  129 (269)
Q Consensus        65 ~~~l~~~~~~~~~l~~l~l~~~~i~~l~~----~~-------~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~  129 (269)
                      +..++..+.....|+.|++++|.+..+..    ..       .....|++|++++|.++.    ..+..+..+++|+.|+
T Consensus        49 ~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~  128 (386)
T 2ca6_A           49 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY  128 (386)
T ss_dssp             HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE
Confidence            34445555556667777777765543322    11       122337777777777766    2344556666666543


Q ss_pred             --ccccc--------c--------------ccccEEEcCCCCCCccC-h---hHHhhccccccEEEccCCCCCc-----c
Q psy10547        130 --ENTFN--------G--------------IFIKNLQLSHCRINSIT-P---NAFRHLEFTLKHLNLQENDLEQ-----V  176 (269)
Q Consensus       130 --~~~~~--------~--------------~~L~~L~l~~n~i~~~~-~---~~~~~l~~~L~~L~l~~n~l~~-----~  176 (269)
                        .+.+.        .              .+|++|++++|.++... +   ..+..++ +|++|++++|+++.     +
T Consensus       129 L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHH
Confidence              22221        0              37888999999887332 2   3566777 89999999998873     3


Q ss_pred             ChhhhcCCCCCCEEeccCCCCC-----CCCCCcccCCCCCCEEEcCCCcccc-----cccccc--CcCCCceeeeccCcc
Q psy10547        177 PVETLRHLKNLTLIDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNLTL-----YKNSFR--GLELNNNLTLYKNSF  244 (269)
Q Consensus       177 ~~~~~~~l~~L~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~--~l~~L~~l~l~~n~~  244 (269)
                      .+..+..+++|+.|++++|.++     .++. .+..+++|+.|+|++|.++.     ++..+.  .+++|+.|++++|.+
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            3336778889999999999883     3443 67788899999999999874     456663  488899999999988


Q ss_pred             cc-----cc-------cccceeecCCCCCCCCC
Q psy10547        245 RG-----LE-------LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       245 ~~-----l~-------~~L~~L~l~~n~l~~~p  265 (269)
                      .+     ++       ++|++|++++|+++...
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            87     33       57899999999988754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=5.6e-17  Score=124.36  Aligned_cols=136  Identities=26%  Similarity=0.291  Sum_probs=118.7

Q ss_pred             CcccEEEecCCCcc--ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         76 VPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        76 ~~l~~l~l~~~~i~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ..++.|++++|.+.  .++........|+.|++++|.++++  ..+..++             +|++|++++|.+++..|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-------------KLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-------------SCCEEEEESCCCCSCCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-------------CCCEEECcCCcCchHHH
Confidence            55799999999998  7776533333499999999999988  6788888             88999999999999778


Q ss_pred             hHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEEcCCCcccccccc
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSDNNLTLYKNS  227 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~p~~  227 (269)
                      ..+..++ +|++|++++|+++.++. ..+..+++|+.|++++|.++.+++   ..+..+++|+.|++++|.+.++|.+
T Consensus        89 ~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           89 MLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             HHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             HHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            8888898 99999999999999864 678999999999999999999986   5788999999999999999988754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=9.1e-18  Score=145.67  Aligned_cols=197  Identities=14%  Similarity=0.187  Sum_probs=145.9

Q ss_pred             hhhhhccCCCCcccEEEecCCCccccCcC----CCCCC-cccEEEecCCCCc---ccCcccc-------cCCccccccc-
Q psy10547         66 ATLNKHVNTKVPLDLLYINNSAIRNINEN----TFNGI-FIKNLQLSHCRIN---SITPNAF-------RHLDAIRNIN-  129 (269)
Q Consensus        66 ~~l~~~~~~~~~l~~l~l~~~~i~~l~~~----~~~~~-~L~~L~l~~n~l~---~~~~~~~-------~~l~~L~~l~-  129 (269)
                      ..++..+.....++.|++++|.+......    .+... .|++|++++|.+.   +..|..+       ..+++|++|+ 
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34444444556689999999998875332    24434 4999999997544   4444433       6788888665 


Q ss_pred             -cccccc-------------ccccEEEcCCCCCCccChhHHhhc-------------cccccEEEccCCCCCc--cCh--
Q psy10547        130 -ENTFNG-------------IFIKNLQLSHCRINSITPNAFRHL-------------EFTLKHLNLQENDLEQ--VPV--  178 (269)
Q Consensus       130 -~~~~~~-------------~~L~~L~l~~n~i~~~~~~~~~~l-------------~~~L~~L~l~~n~l~~--~~~--  178 (269)
                       .+.+..             .+|++|++++|.++...+..+...             + +|++|++++|+++.  ++.  
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHH
Confidence             444444             279999999999976655444443             6 89999999999873  221  


Q ss_pred             hhhcCCCCCCEEeccCCCCCC-----CCCCcccCCCCCCEEEcCCCccc-----cccccccCcCCCceeeeccCccccc-
Q psy10547        179 ETLRHLKNLTLIDLSKNKIGK-----IPDDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELNNNLTLYKNSFRGL-  247 (269)
Q Consensus       179 ~~~~~l~~L~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~-----~~p~~~~~l~~L~~l~l~~n~~~~l-  247 (269)
                      ..+..+++|+.|++++|.++.     +.+..+..+++|+.|+|++|.++     .+|..+..+++|+.|++++|.+.+. 
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            457788999999999998872     23336778899999999999994     5788899999999999999988753 


Q ss_pred             ------------ccccceeecCCCCCCC
Q psy10547        248 ------------ELSLKNLNLKNTKLKS  263 (269)
Q Consensus       248 ------------~~~L~~L~l~~n~l~~  263 (269)
                                  .++|++|++++|+++.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence                        2579999999999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.70  E-value=1.2e-16  Score=123.51  Aligned_cols=106  Identities=25%  Similarity=0.364  Sum_probs=66.4

Q ss_pred             EEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhc
Q psy10547         80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL  159 (269)
Q Consensus        80 ~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  159 (269)
                      .++++++.+..+|...+  ..+++|++++|+++++.+..|.+++             +|++|++++|.++++++..|..+
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~i~~~~~~~l   80 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-------------NLQQLYFNSNKLTAIPTGVFDKL   80 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-------------CCCEEECCCCCCCccChhHhCCc
Confidence            34555555566665543  3356777777777776666666666             56666777776666666556666


Q ss_pred             cccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCC
Q psy10547        160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP  201 (269)
Q Consensus       160 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~  201 (269)
                      . +|++|++++|+++.+++..|..+++|++|++++|.+...+
T Consensus        81 ~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           81 T-QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             c-hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            6 6666666666666666555666666666666666655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.9e-16  Score=144.78  Aligned_cols=153  Identities=25%  Similarity=0.383  Sum_probs=133.5

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCcc
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI  151 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~  151 (269)
                      +..+..|+.|++++|.+..++. ......|+.|++++|.+.++.  .+..++             +|+.|+|++|.++.+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~-------------~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLK-------------KLKSLSLEHNGISDI  124 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCT-------------TCCEEECTTSCCCCC
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCC-------------CCCEEEecCCCCCCC
Confidence            3456778999999999999887 333334999999999999864  577777             889999999999987


Q ss_pred             ChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCc
Q psy10547        152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL  231 (269)
Q Consensus       152 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l  231 (269)
                        ..+..++ +|+.|++++|.++.+  ..+..+++|+.|+|++|.+..+++  +..+++|+.|+|++|.|+.++ .+..+
T Consensus       125 --~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l  196 (605)
T 1m9s_A          125 --NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGL  196 (605)
T ss_dssp             --GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             --ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccC
Confidence              3588888 999999999999998  458999999999999999999876  889999999999999999885 68999


Q ss_pred             CCCceeeeccCcccccc
Q psy10547        232 ELNNNLTLYKNSFRGLE  248 (269)
Q Consensus       232 ~~L~~l~l~~n~~~~l~  248 (269)
                      ++|+.|++++|.+.+.|
T Consensus       197 ~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          197 KNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCSEEECCSEEEECCC
T ss_pred             CCCCEEEccCCcCcCCc
Confidence            99999999999988754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=1.5e-17  Score=143.11  Aligned_cols=170  Identities=21%  Similarity=0.239  Sum_probs=138.6

Q ss_pred             EEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCc----ccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547         81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITP----NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA  155 (269)
Q Consensus        81 l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~  155 (269)
                      ..++++.+....+..+.... |++|++++|.++.+.+    .+|..++.            +|++|++++|.+++..+..
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~------------~L~~L~Ls~N~l~~~~~~~   70 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA------------SVTSLNLSGNSLGFKNSDE   70 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT------------TCCEEECCSSCGGGSCHHH
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC------------ceeEEECcCCCCCHHHHHH
Confidence            56778887766666666555 9999999999999887    66666651            4788999999999998888


Q ss_pred             Hhhc-----cccccEEEccCCCCCccChhh----hcCC-CCCCEEeccCCCCCCCCCCccc----C-CCCCCEEEcCCCc
Q psy10547        156 FRHL-----EFTLKHLNLQENDLEQVPVET----LRHL-KNLTLIDLSKNKIGKIPDDSFS----T-LNNLVTLKLSDNN  220 (269)
Q Consensus       156 ~~~l-----~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~i~~i~~~~~~----~-l~~L~~L~L~~n~  220 (269)
                      +..+     . +|++|++++|.++...+..    +..+ ++|+.|++++|.++..+...+.    . .++|++|++++|.
T Consensus        71 l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           71 LVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHhccCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            8776     6 8999999999999877664    4444 8999999999999888764443    3 3589999999999


Q ss_pred             cc-----cccccccCcC-CCceeeeccCcccccc------------cccceeecCCCCCCC
Q psy10547        221 LT-----LYKNSFRGLE-LNNNLTLYKNSFRGLE------------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       221 l~-----~~p~~~~~l~-~L~~l~l~~n~~~~l~------------~~L~~L~l~~n~l~~  263 (269)
                      ++     .++..+..++ +|++|++++|.+.+..            ++|++||+++|+|+.
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            98     3455666666 9999999999997643            489999999999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2e-17  Score=154.39  Aligned_cols=141  Identities=23%  Similarity=0.334  Sum_probs=70.0

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      |+.|+|++|.+..+.+..+ .++             +|++|+|++|.++.+ |..|..+. +|++|+|++|+++.++ ..
T Consensus       226 L~~L~Ls~n~l~~l~~~~~-~l~-------------~L~~L~Ls~N~l~~l-p~~~~~l~-~L~~L~Ls~N~l~~lp-~~  288 (727)
T 4b8c_D          226 WHALDLSNLQIFNISANIF-KYD-------------FLTRLYLNGNSLTEL-PAEIKNLS-NLRVLDLSHNRLTSLP-AE  288 (727)
T ss_dssp             CCEEECTTSCCSCCCGGGG-GCC-------------SCSCCBCTTSCCSCC-CGGGGGGT-TCCEEECTTSCCSSCC-SS
T ss_pred             CcEEECCCCCCCCCChhhc-CCC-------------CCCEEEeeCCcCccc-ChhhhCCC-CCCEEeCcCCcCCccC-hh
Confidence            5666666666554433322 444             455566666666533 34455555 5666666666666553 33


Q ss_pred             hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCcCC-CceeeeccCcccc-cccccceeecC
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGLEL-NNNLTLYKNSFRG-LELSLKNLNLK  257 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~-L~~l~l~~n~~~~-l~~~L~~L~l~  257 (269)
                      |..+++|++|+|++|.++.+|. .|..+++|+.|+|++|.|+. +|..+..+.. +..+++++|.+++ +|..++.|+++
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~  367 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEIN  367 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_pred             hcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEee
Confidence            5556666666666666665554 35556666666666666653 3333333221 1224555555554 34456666666


Q ss_pred             CC
Q psy10547        258 NT  259 (269)
Q Consensus       258 ~n  259 (269)
                      +|
T Consensus       368 ~n  369 (727)
T 4b8c_D          368 TD  369 (727)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=1.5e-16  Score=119.55  Aligned_cols=123  Identities=25%  Similarity=0.286  Sum_probs=67.7

Q ss_pred             ccEEEecCCCCc-ccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        101 IKNLQLSHCRIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       101 L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      ++.|++++|.++ +..|..+..++             ++++|++++|.++++  ..+..++ +|++|++++|.+++..+.
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFE-------------ELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCT-------------TCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHH
T ss_pred             CeEEEccCCcCChhHHHHHHhhcC-------------CCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHH
Confidence            455555555555 33344445555             555566666655555  3455555 566666666666654444


Q ss_pred             hhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCCCccccccc----cccCcCCCceeee
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLTL  239 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~l  239 (269)
                      .+..+++|++|++++|.++.++ +..+..+++|+.|++++|.++.++.    .+..+++|+.|++
T Consensus        83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            4555566666666666665543 1345556666666666666665543    4555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=5.9e-17  Score=137.70  Aligned_cols=180  Identities=19%  Similarity=0.230  Sum_probs=128.5

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCccc-CcccccCCcccccccc--ccccc---------ccccEEEcC
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSI-TPNAFRHLDAIRNINE--NTFNG---------IFIKNLQLS  144 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~~--~~~~~---------~~L~~L~l~  144 (269)
                      .++.+++++|.+...+...+...+|++|++++|.+.+. .+..+..+++|++|+.  +.+.+         .+|++|+++
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            46889999998888888877766799999999988765 5667788887776542  22221         268888888


Q ss_pred             CC-CCCcc-ChhHHhhccccccEEEccCC-CCCcc-ChhhhcCCC-CCCEEeccCCC--CC--CCCCCcccCCCCCCEEE
Q psy10547        145 HC-RINSI-TPNAFRHLEFTLKHLNLQEN-DLEQV-PVETLRHLK-NLTLIDLSKNK--IG--KIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       145 ~n-~i~~~-~~~~~~~l~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--i~--~i~~~~~~~l~~L~~L~  215 (269)
                      +| .+++. .+..+..++ +|++|++++| .++.. .+..+..++ +|+.|++++|.  ++  .++. .+..+++|+.|+
T Consensus       151 ~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~  228 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLD  228 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEE
T ss_pred             CCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEe
Confidence            88 66652 345566777 8888888888 77753 245567778 88888888884  32  3332 556778888888


Q ss_pred             cCCCc-cc-cccccccCcCCCceeeeccCc-c--------cccccccceeecCCC
Q psy10547        216 LSDNN-LT-LYKNSFRGLELNNNLTLYKNS-F--------RGLELSLKNLNLKNT  259 (269)
Q Consensus       216 L~~n~-l~-~~p~~~~~l~~L~~l~l~~n~-~--------~~l~~~L~~L~l~~n  259 (269)
                      +++|. ++ ..+..+..+++|+.|++++|. +        ..+ ++|+.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC-CCCCEEeccCc
Confidence            88887 55 456677888888888888872 2        223 37888888887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=2.6e-16  Score=133.75  Aligned_cols=195  Identities=19%  Similarity=0.217  Sum_probs=146.6

Q ss_pred             cCCCCcccEEEecCCCccc--cCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccc---ccc----------c
Q psy10547         72 VNTKVPLDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENT---FNG----------I  136 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~---~~~----------~  136 (269)
                      ......|+.|++++|.+..  ++.......+|++|++++|.+++..+..+..+++|++|+...   +.+          .
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            3456778999999998764  343333334599999999999887788888899999776332   332          2


Q ss_pred             cccEEEcCCC-CCCcc-ChhHHhhccccccEEEccCC--CCC-ccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCC
Q psy10547        137 FIKNLQLSHC-RINSI-TPNAFRHLEFTLKHLNLQEN--DLE-QVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNN  210 (269)
Q Consensus       137 ~L~~L~l~~n-~i~~~-~~~~~~~l~~~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~  210 (269)
                      +|++|++++| .+++. .+..+..++.+|++|++++|  .++ ...+..+..+++|+.|++++|. ++......+..+++
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence            7999999999 98864 24556665437999999999  454 3334567789999999999998 66444457889999


Q ss_pred             CCEEEcCCCc-ccc-ccccccCcCCCceeeeccCcccc-----cccccceeecCCCCCCCCCCC
Q psy10547        211 LVTLKLSDNN-LTL-YKNSFRGLELNNNLTLYKNSFRG-----LELSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       211 L~~L~L~~n~-l~~-~p~~~~~l~~L~~l~l~~n~~~~-----l~~~L~~L~l~~n~l~~~p~~  267 (269)
                      |+.|++++|. +.. ....+..+++|+.|++++| ++.     +...+..|++++|++++..|.
T Consensus       249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCC
Confidence            9999999995 331 2236888999999999999 554     224689999999999986553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=1.5e-16  Score=122.97  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             CCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ...++.|++++|.+..++ ...... .|+.|++++|.++++  ..|..++             +|++|++++|.++.+++
T Consensus        18 ~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-------------~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLR-------------RLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCS-------------SCCEEECCSSCCCEECS
T ss_pred             cCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc--cccccCC-------------CCCEEECCCCcccccCc
Confidence            344555555555555542 222222 355555555555544  2344444             44455555555555544


Q ss_pred             hHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCC---cccCCCCCCEEEcCCCccc
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDD---SFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~---~~~~l~~L~~L~L~~n~l~  222 (269)
                      ..|..++ +|++|++++|+++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|+++.|.+.
T Consensus        82 ~~~~~l~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           82 GLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CHHHHCT-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             chhhcCC-CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            4444444 55555555555544432 2344445555555555554444331   2444444555554444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=5.5e-16  Score=131.67  Aligned_cols=175  Identities=23%  Similarity=0.312  Sum_probs=93.8

Q ss_pred             CCcccEEEecCCCcc--------------------ccCcCCCCC--------Cc-ccEEEecCCCCcccCcccccCCccc
Q psy10547         75 KVPLDLLYINNSAIR--------------------NINENTFNG--------IF-IKNLQLSHCRINSITPNAFRHLDAI  125 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~--------------------~l~~~~~~~--------~~-L~~L~l~~n~l~~~~~~~~~~l~~L  125 (269)
                      ...|+.|++++|.+.                    .|+...|.+        .. |++|++.. .++.|.+.+|.+++  
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~--  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD--  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT--
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc--
Confidence            445677777777777                    566666666        33 77777777 77777777777777  


Q ss_pred             ccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCC----CccChh----------------------
Q psy10547        126 RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL----EQVPVE----------------------  179 (269)
Q Consensus       126 ~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l----~~~~~~----------------------  179 (269)
                                 +|+.+++++|.+..+.+.+|.+.. ++..+....+..    ..+...                      
T Consensus       125 -----------~L~~l~l~~n~i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~  192 (329)
T 3sb4_A          125 -----------NLKICQIRKKTAPNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED  192 (329)
T ss_dssp             -----------TCCEEEBCCSSCCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred             -----------ccceEEcCCCCccccchhhhcCCC-ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence                       555566666655555555554443 344443332100    000000                      


Q ss_pred             ---------------------------hh-cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccC
Q psy10547        180 ---------------------------TL-RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRG  230 (269)
Q Consensus       180 ---------------------------~~-~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~  230 (269)
                                                 .+ ..+++|+.+++++|.++.|++.+|.++.+|+.+++.+| ++.++ .+|.+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~  271 (329)
T 3sb4_A          193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN  271 (329)
T ss_dssp             HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence                                       00 01455556666655566665555655556666666555 44433 34555


Q ss_pred             cCCCc-eeeecc-------CcccccccccceeecCCCCCCCCCC
Q psy10547        231 LELNN-NLTLYK-------NSFRGLELSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       231 l~~L~-~l~l~~-------n~~~~l~~~L~~L~l~~n~l~~~p~  266 (269)
                      +.+|+ .+++..       ..|.+.+ +|+.+++++|+++.+++
T Consensus       272 ~~~L~~~l~l~~~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          272 CGRLAGTLELPASVTAIEFGAFMGCD-NLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CTTCCEEEEECTTCCEECTTTTTTCT-TEEEEEECSSCCCEECT
T ss_pred             ChhccEEEEEcccceEEchhhhhCCc-cCCEEEeCCCccCccch
Confidence            55555 555543       2233332 56666666666655554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=7.7e-16  Score=115.60  Aligned_cols=127  Identities=25%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             CcccEEEecCCCcc--ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         76 VPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        76 ~~l~~l~l~~~~i~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ..++.|++++|.+.  .++........|+.|++++|.++++  ..+..++             +|++|++++|.+++..|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-------------KLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-------------TCCEEECCSSCCCSCTH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-------------CCCEEECCCCcccchHH
Confidence            45799999999998  7776443444599999999999988  6678888             88999999999999778


Q ss_pred             hHHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEEcCC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSD  218 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~L~~  218 (269)
                      ..+..++ +|++|++++|++++++ +..+..+++|+.|++++|.++.+++   ..+..+++|+.|++++
T Consensus        82 ~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           82 VLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHCT-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHhhhCC-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888898 9999999999999874 3678999999999999999999886   5788899999998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=5.5e-16  Score=119.81  Aligned_cols=131  Identities=23%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             CcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh
Q psy10547         99 IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV  178 (269)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~  178 (269)
                      ..++.|++++|.++.+ +......+             +|++|++++|.++++  ..|..++ +|++|++++|.++++++
T Consensus        19 ~~L~~L~l~~n~l~~i-~~~~~~~~-------------~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-ENLGATLD-------------QFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTT-------------CCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECS
T ss_pred             CCceEEEeeCCCCchh-HHhhhcCC-------------CCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCc
Confidence            3489999999999977 43333344             688999999999998  5788888 99999999999999988


Q ss_pred             hhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCcccccccc----ccCcCCCceeeeccCcccc
Q psy10547        179 ETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKNS----FRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       179 ~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~~----~~~l~~L~~l~l~~n~~~~  246 (269)
                      ..|..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+|..    +..+++|+.++++.|....
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            877999999999999999988875 3688899999999999999988875    8899999999999987765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=4e-17  Score=148.26  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=130.9

Q ss_pred             CCcccEEEecCCCCcccCcccccCCcccccccccccc---------------c---------ccccEEE-cCCCCCCccC
Q psy10547         98 GIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFN---------------G---------IFIKNLQ-LSHCRINSIT  152 (269)
Q Consensus        98 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~---------------~---------~~L~~L~-l~~n~i~~~~  152 (269)
                      ...|+.|++++|++..+ |..+..+++|+.|+.+...               +         .+|+.|+ ++.|.+..+.
T Consensus       348 ~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            34488999999999877 7788888888876632211               1         0455555 4544433321


Q ss_pred             hh-----HHhhcc-ccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547        153 PN-----AFRHLE-FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       153 ~~-----~~~~l~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~  226 (269)
                      ..     .+..++ ..|+.|++++|.+++++.  +..+++|+.|++++|.++.+|. .+..+++|+.|+|++|.++.+| 
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-
Confidence            11     111111 168899999999999874  9999999999999999999986 7999999999999999999998 


Q ss_pred             cccCcCCCceeeeccCccccc--c------cccceeecCCCCCCCCCCCC
Q psy10547        227 SFRGLELNNNLTLYKNSFRGL--E------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       227 ~~~~l~~L~~l~l~~n~~~~l--~------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      .++.+++|+.|++++|.++++  |      ++|++|++++|+++++|+.+
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            899999999999999999887  5      58999999999999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=4e-16  Score=145.65  Aligned_cols=171  Identities=19%  Similarity=0.233  Sum_probs=113.0

Q ss_pred             ccEEEecCCCccccCcCCCCCCcc-----cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFI-----KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT  152 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~  152 (269)
                      +..+.+.++.+..++...+....|     ..++++.|++. +.+..|..++             .|+.|+|++|.+..++
T Consensus       175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-------------~L~~L~Ls~n~l~~l~  240 (727)
T 4b8c_D          175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-------------LWHALDLSNLQIFNIS  240 (727)
T ss_dssp             ------------------------------------------------CCC-------------CCCEEECTTSCCSCCC
T ss_pred             cceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCC-------------CCcEEECCCCCCCCCC
Confidence            467888888888777666544433     33334444444 4466777888             8899999999999887


Q ss_pred             hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547        153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE  232 (269)
Q Consensus       153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~  232 (269)
                      +..+ .+. +|++|+|++|.++.++ ..|..+++|++|+|++|.++.+|. .|..+++|+.|+|++|.|+.+|..++.++
T Consensus       241 ~~~~-~l~-~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~  316 (727)
T 4b8c_D          241 ANIF-KYD-FLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLC  316 (727)
T ss_dssp             GGGG-GCC-SCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred             hhhc-CCC-CCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            6554 788 9999999999999777 568999999999999999999876 68999999999999999999999999999


Q ss_pred             CCceeeeccCcccccc--------cccceeecCCCCCCCCCC
Q psy10547        233 LNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       233 ~L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~~p~  266 (269)
                      +|+.|++++|.|++.+        .....+++++|.++..+|
T Consensus       317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            9999999999999753        122357899999997444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=3.3e-15  Score=126.82  Aligned_cols=177  Identities=21%  Similarity=0.254  Sum_probs=126.2

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccc--------------cc-----
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENT--------------FN-----  134 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~--------------~~-----  134 (269)
                      ...|+.+++.+ .+..|+..+|.+.. |+.+++++|.+..+.+.+|.++.++..++.+.              |.     
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            68899999999 89999999999876 99999999999999999999988777665333              11     


Q ss_pred             ----------------------cccccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEe
Q psy10547        135 ----------------------GIFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID  191 (269)
Q Consensus       135 ----------------------~~~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  191 (269)
                                            ..++..+.+.++ +.......+. .+. +|+.+++++|+++.++..+|..+.+|+.++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence                                  001222222222 1111111222 245 788888888888888888888888888888


Q ss_pred             ccCCCCCCCCCCcccCCCCCC-EEEcCCCcccccc-ccccCcCCCceeeeccCcccccc-------cccceeec
Q psy10547        192 LSKNKIGKIPDDSFSTLNNLV-TLKLSDNNLTLYK-NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNL  256 (269)
Q Consensus       192 l~~n~i~~i~~~~~~~l~~L~-~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l  256 (269)
                      +++| ++.|++.+|.++.+|+ .+.+.+ .++.++ .+|.++++|+.+++.+|.++.++       ++|+.++.
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8887 8888888888888888 888877 666654 57888888888888777666554       35666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=6.1e-15  Score=113.35  Aligned_cols=107  Identities=24%  Similarity=0.376  Sum_probs=95.3

Q ss_pred             cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL  181 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~  181 (269)
                      +.+++++|.++.++...+   +             +++.|++++|.++++.+..|.++. +|++|++++|+++++++..|
T Consensus        12 ~~l~~s~n~l~~ip~~~~---~-------------~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP---T-------------TTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC---T-------------TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTT
T ss_pred             CEEEeCCCCcCccCccCC---C-------------CCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhc
Confidence            789999999998754322   3             788999999999999999999998 99999999999999999889


Q ss_pred             cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc
Q psy10547        182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK  225 (269)
Q Consensus       182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p  225 (269)
                      ..+++|++|++++|+++.+++..|..+++|+.|+|++|.++-.+
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999999999999999888999999999999999887433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=1.7e-16  Score=140.42  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             cccEEEcCCCCCCccChhHHhh-----ccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCCCC-----C
Q psy10547        137 FIKNLQLSHCRINSITPNAFRH-----LEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGKIP-----D  202 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~-----l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~i~-----~  202 (269)
                      +|++|++++|.++......+..     .+ +|++|++++|.++...    +..+..+++|+.|++++|.++...     +
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence            4445555555444433322221     22 4555555555444321    223344445555555555443221     1


Q ss_pred             CcccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCcc
Q psy10547        203 DSFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       203 ~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~  244 (269)
                      ..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.+
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence            112233445555555554442     344444444444454444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=3e-16  Score=138.90  Aligned_cols=197  Identities=18%  Similarity=0.276  Sum_probs=143.1

Q ss_pred             hhhhhccCCCCcccEEEecCCCccccCc-CCCC----CC-cccEEEecCCCCccc----CcccccCCccccccc--cccc
Q psy10547         66 ATLNKHVNTKVPLDLLYINNSAIRNINE-NTFN----GI-FIKNLQLSHCRINSI----TPNAFRHLDAIRNIN--ENTF  133 (269)
Q Consensus        66 ~~l~~~~~~~~~l~~l~l~~~~i~~l~~-~~~~----~~-~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~--~~~~  133 (269)
                      ..++..+.....|+.|++++|.+.+... ..+.    .. +|++|++++|.++..    .+.++..+++|++|+  .+.+
T Consensus        46 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           46 KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            3455555566778999999998876432 1111    11 489999999998853    377888889888765  3333


Q ss_pred             cc--------------ccccEEEcCCCCCCccC----hhHHhhccccccEEEccCCCCCccChhhhc-----CCCCCCEE
Q psy10547        134 NG--------------IFIKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQVPVETLR-----HLKNLTLI  190 (269)
Q Consensus       134 ~~--------------~~L~~L~l~~n~i~~~~----~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L  190 (269)
                      ..              .+|++|++++|.++...    +..+..++ +|++|++++|.+.......+.     ..++|+.|
T Consensus       126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L  204 (461)
T 1z7x_W          126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL  204 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence            21              15999999999988765    44555667 899999999998765444332     36689999


Q ss_pred             eccCCCCCCCC----CCcccCCCCCCEEEcCCCccccc------cccccCcCCCceeeeccCcccc-----cc------c
Q psy10547        191 DLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLTLY------KNSFRGLELNNNLTLYKNSFRG-----LE------L  249 (269)
Q Consensus       191 ~l~~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~------p~~~~~l~~L~~l~l~~n~~~~-----l~------~  249 (269)
                      ++++|.++...    +..+..+++|++|++++|.++..      +..+..+++|+.|++++|.+++     ++      +
T Consensus       205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  284 (461)
T 1z7x_W          205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE  284 (461)
T ss_dssp             ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred             EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence            99999887742    23566788999999999998742      2233468899999999999887     33      5


Q ss_pred             ccceeecCCCCCCC
Q psy10547        250 SLKNLNLKNTKLKS  263 (269)
Q Consensus       250 ~L~~L~l~~n~l~~  263 (269)
                      +|++|++++|+++.
T Consensus       285 ~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          285 SLKELSLAGNELGD  298 (461)
T ss_dssp             TCCEEECTTCCCHH
T ss_pred             CcceEECCCCCCch
Confidence            79999999998863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=7e-15  Score=113.46  Aligned_cols=109  Identities=25%  Similarity=0.405  Sum_probs=96.2

Q ss_pred             cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547        102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL  181 (269)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~  181 (269)
                      +.+++++|+++.++...+   +             +++.|++++|.++++.+..|..+. +|++|++++|+++++++..|
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~   77 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---T-------------DKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVF   77 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---T-------------TCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             cEEEeCCCCCCccCCCcC---C-------------CCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHh
Confidence            688999999988754322   4             788999999999999999999999 99999999999999998888


Q ss_pred             cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547        182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS  227 (269)
Q Consensus       182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~  227 (269)
                      ..+++|++|++++|+++.+++..|..+++|+.|++++|.+...+..
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            9999999999999999999988899999999999999999865543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.53  E-value=3.7e-14  Score=121.08  Aligned_cols=115  Identities=20%  Similarity=0.344  Sum_probs=88.0

Q ss_pred             cCCcc-eeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecC-CCccccCcCCCCCCc-ccEEEecCCCCcc
Q psy10547         37 LQSTC-ICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINN-SAIRNINENTFNGIF-IKNLQLSHCRINS  113 (269)
Q Consensus        37 ~~~~C-~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~-~~i~~l~~~~~~~~~-L~~L~l~~n~l~~  113 (269)
                      ||..| .|.+     ..+.|.+..++..+|    . +....+|+.|++++ |.+..++.+.|..+. |+.|+|++|+|++
T Consensus         1 cp~~c~~C~~-----~~v~~~~~n~l~~ip----~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A            1 CPDACCPHGS-----SGLRCTRDGALDSLH----H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             CCSSSCCSSS-----SCEECCSSCCCTTTT----T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred             CCCcCccccC-----CEEEcCCCCCCCccC----C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence            56889 9976     568998432454433    3 45566788888885 888888888777665 8888888888888


Q ss_pred             cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCcc
Q psy10547        114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV  176 (269)
Q Consensus       114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~  176 (269)
                      +.+.+|.+++             +|+.|+|++|.++.+++..|..+  +|++|++.+|++...
T Consensus        71 ~~~~~~~~l~-------------~L~~L~l~~N~l~~~~~~~~~~~--~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           71 VAPDAFHFTP-------------RLSRLNLSFNALESLSWKTVQGL--SLQELVLSGNPLHCS  118 (347)
T ss_dssp             ECTTGGGSCS-------------CCCEEECCSSCCSCCCSTTTCSC--CCCEEECCSSCCCCC
T ss_pred             eCHHHhcCCc-------------CCCEEeCCCCccceeCHHHcccC--CceEEEeeCCCccCC
Confidence            8888888888             77888888888888877777655  388888888887753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=1.5e-13  Score=119.72  Aligned_cols=184  Identities=13%  Similarity=0.157  Sum_probs=116.0

Q ss_pred             ccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc---------cccccccccccEE
Q psy10547         71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI---------NENTFNGIFIKNL  141 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l---------~~~~~~~~~L~~L  141 (269)
                      .+.+...|+.+++.+|.+..++...|....|+.+.+. +.++.+...+|.++++|+.+         ...+|.+.+|+.+
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i  253 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV  253 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence            3445566777777777777777777776557777776 34777777777777665533         2455555566666


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCC-----ccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-----QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .+ .+.++.+...+|.++. +|+.+.+.++.+.     .+...+|..+++|+.+++. +.++.++..+|.++.+|+.+.+
T Consensus       254 ~l-p~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          254 KL-PNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EE-ETTCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred             Ee-CCCccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence            66 3446666666777666 6777777666554     4666667777777777776 3466666667777777777777


Q ss_pred             CCCccccc-cccccCcCCCceeeeccCcccc--------cccccceeecCCCC
Q psy10547        217 SDNNLTLY-KNSFRGLELNNNLTLYKNSFRG--------LELSLKNLNLKNTK  260 (269)
Q Consensus       217 ~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~--------l~~~L~~L~l~~n~  260 (269)
                      ..+ ++.+ ..+|.++ +|+.+++.+|....        ++..++.|++..+.
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            544 4444 3456666 67777766654333        33345556555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=7.1e-13  Score=115.39  Aligned_cols=181  Identities=15%  Similarity=0.291  Sum_probs=109.5

Q ss_pred             ccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccc---------cccccccccc-cccEEEcCCC
Q psy10547         78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR---------NINENTFNGI-FIKNLQLSHC  146 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~---------~l~~~~~~~~-~L~~L~l~~n  146 (269)
                      |+.+.+.+ .+..|+...|.+.. |+.+++++|+++.+...+|.. .+|+         .+...+|.+- +|+.+++..+
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence            34444432 34444444444433 444444444444444444432 2222         1223333332 4555555543


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC-----CCCCCcccCCCCCCEEEcCCCcc
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                       ++.+...+|.+ . +|+.+.+ .+.++.+...+|..+++|+.+++.+|.+.     .++..+|.++.+|+.+.+. +.+
T Consensus       237 -l~~I~~~aF~~-~-~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          237 -VSTIGQEAFRE-S-GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             -CCEECTTTTTT-C-CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred             -ccCcccccccc-C-CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence             45555555555 3 5666666 34566777778888888888888887665     5777888888888888888 446


Q ss_pred             cccc-ccccCcCCCceeeeccC-------cccccccccceeecCCCCCCCCCCC
Q psy10547        222 TLYK-NSFRGLELNNNLTLYKN-------SFRGLELSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       222 ~~~p-~~~~~l~~L~~l~l~~n-------~~~~l~~~L~~L~l~~n~l~~~p~~  267 (269)
                      +.++ .+|.++.+|+.+.+..+       .|.+.  +|+.+++++|.+..+++.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT--GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS--CCCEEEECCSSCCBCCCS
T ss_pred             EEEhhhhhcCCCCccEEEECccccEEcHHhCCCC--CCCEEEEcCCCCcccccc
Confidence            6654 47888888888887543       44444  799999999987776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=3.2e-16  Score=123.45  Aligned_cols=103  Identities=28%  Similarity=0.384  Sum_probs=50.6

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      |++|++++|.++++.  .+..++             +|++|++++|.++.++ ..+..++ +|++|++++|++++++  .
T Consensus        50 L~~L~ls~n~l~~l~--~~~~l~-------------~L~~L~l~~n~l~~l~-~~~~~~~-~L~~L~L~~N~l~~l~--~  110 (198)
T 1ds9_A           50 CKHLALSTNNIEKIS--SLSGME-------------NLRILSLGRNLIKKIE-NLDAVAD-TLEELWISYNQIASLS--G  110 (198)
T ss_dssp             CSEEECSEEEESCCC--CHHHHT-------------TCCEEEEEEEEECSCS-SHHHHHH-HCSEEEEEEEECCCHH--H
T ss_pred             CCEEECCCCCCcccc--ccccCC-------------CCCEEECCCCCccccc-chhhcCC-cCCEEECcCCcCCcCC--c
Confidence            555555555555532  444444             4455555555555432 2333344 5555555555555543  2


Q ss_pred             hcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccc
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++
T Consensus       111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            4445555555555555554432 23445555555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=4.1e-14  Score=122.05  Aligned_cols=155  Identities=16%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             ccEEEecCCCccccCcCCCC-----C-CcccEEEecCCCCcccCccccc-CCcccccccccccccccccEEEcCCCCCCc
Q psy10547         78 LDLLYINNSAIRNINENTFN-----G-IFIKNLQLSHCRINSITPNAFR-HLDAIRNINENTFNGIFIKNLQLSHCRINS  150 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~-----~-~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~  150 (269)
                      ++.+++++|.+.......+.     . ..|+.|++++|.++......+. .++             +++.|++++|.++.
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-------------~L~~L~Ls~n~l~~  140 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-------------RARKLGLQLNSLGP  140 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-------------TEEEEECCSSCCCH
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-------------hccHhhcCCCCCCH
Confidence            57888888887654433322     2 2488888888887654333332 234             57778888888876


Q ss_pred             cChhHHhh-----ccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCCCC----CCcccCCCCCCEEEcC
Q psy10547        151 ITPNAFRH-----LEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLS  217 (269)
Q Consensus       151 ~~~~~~~~-----l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~i~----~~~~~~l~~L~~L~L~  217 (269)
                      .....+..     .. +|++|++++|.++...    ...+..+++|++|++++|.++...    ...+...++|+.|+|+
T Consensus       141 ~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          141 EACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             HHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence            65555432     23 6888888888876532    233466778888888888876432    2245566778888888


Q ss_pred             CCcccc-----ccccccCcCCCceeeeccCcccc
Q psy10547        218 DNNLTL-----YKNSFRGLELNNNLTLYKNSFRG  246 (269)
Q Consensus       218 ~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~  246 (269)
                      +|.|+.     ++..+...++|++|++++|.+.+
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            888863     34456667788888888887765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=5.8e-16  Score=121.99  Aligned_cols=143  Identities=22%  Similarity=0.286  Sum_probs=116.7

Q ss_pred             cccEEEecCCCCcccCcc------cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCC
Q psy10547        100 FIKNLQLSHCRINSITPN------AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL  173 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~------~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l  173 (269)
                      .++.++++.+.+.+..|.      .+..++             +|++|++++|.+++++  .+..++ +|++|++++|.+
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-------------~L~~L~ls~n~l~~l~--~~~~l~-~L~~L~l~~n~l   82 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLK-------------ACKHLALSTNNIEKIS--SLSGME-NLRILSLGRNLI   82 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTT-------------TCSEEECSEEEESCCC--CHHHHT-TCCEEEEEEEEE
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCC-------------CCCEEECCCCCCcccc--ccccCC-CCCEEECCCCCc
Confidence            377888888888887765      677777             7888999999998864  788888 899999999999


Q ss_pred             CccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc--cccCcCCCceeeeccCcccccc---
Q psy10547        174 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKNSFRGLE---  248 (269)
Q Consensus       174 ~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~--~~~~l~~L~~l~l~~n~~~~l~---  248 (269)
                      +.++. .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++.  .+..+++|+.+++++|.+.+.+   
T Consensus        83 ~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           83 KKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             CSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             ccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            98764 5666789999999999998876  47788899999999999987664  7888999999999999886641   


Q ss_pred             --------------cccceeecCCCCCCC
Q psy10547        249 --------------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       249 --------------~~L~~L~l~~n~l~~  263 (269)
                                    ++|++||  +|.++.
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                          4667766  666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=1.1e-12  Score=111.99  Aligned_cols=106  Identities=22%  Similarity=0.292  Sum_probs=85.3

Q ss_pred             cEEEecCC-CccccCcCCCCCCcccEEEecC-CCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         79 DLLYINNS-AIRNINENTFNGIFIKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        79 ~~l~l~~~-~i~~l~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      ..++++++ .+..+|. +....+|++|+|++ |.++++.+..|.+++             +|+.|+|++|.++++.+..|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-------------~L~~L~l~~N~l~~~~~~~~   76 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-------------ELRNLTIVKSGLRFVAPDAF   76 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-------------CCSEEECCSSCCCEECTTGG
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-------------CCCEEECCCCccceeCHHHh
Confidence            45688887 7888888 44444588888886 888888888888888             78888888888888888888


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI  200 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i  200 (269)
                      .+++ +|++|+|++|+++++++..|..++ |+.|++.+|.+...
T Consensus        77 ~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           77 HFTP-RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             GSCS-CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             cCCc-CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            8888 888888888888888877777666 88888888887644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=8.9e-14  Score=119.97  Aligned_cols=149  Identities=17%  Similarity=0.215  Sum_probs=115.0

Q ss_pred             ccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCC
Q psy10547        101 IKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLE  174 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~  174 (269)
                      ++.|++++|.++......+...     +             +|+.|++++|.++......+. .+. +|++|++++|.++
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-------------~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~  139 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRH-------------ALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLG  139 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSS-------------CEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCC
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCC-------------CceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCC
Confidence            7999999999987655444332     3             788999999998775544443 355 8999999999998


Q ss_pred             ccChhhh-----cCCCCCCEEeccCCCCCCCCCC----cccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeec
Q psy10547        175 QVPVETL-----RHLKNLTLIDLSKNKIGKIPDD----SFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLY  240 (269)
Q Consensus       175 ~~~~~~~-----~~l~~L~~L~l~~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~  240 (269)
                      ......+     ...++|+.|++++|.++.....    .+...++|++|+|++|.++.     ++..+...+.|+.|+++
T Consensus       140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence            6544433     3468899999999998653322    34677889999999999973     45677888899999999


Q ss_pred             cCcccccc-----------cccceeecCCCCCCC
Q psy10547        241 KNSFRGLE-----------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       241 ~n~~~~l~-----------~~L~~L~l~~n~l~~  263 (269)
                      +|.+++..           ++|++|||++|+|+.
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            99997621           589999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=1e-12  Score=119.71  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=76.7

Q ss_pred             cccEEEcCCCCCCccChhHHhh-ccccccEEEcc----CCCCCccC-----hhhhcCCCCCCEEeccCCC--CCCCCCCc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRH-LEFTLKHLNLQ----ENDLEQVP-----VETLRHLKNLTLIDLSKNK--IGKIPDDS  204 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~-l~~~L~~L~l~----~n~l~~~~-----~~~~~~l~~L~~L~l~~n~--i~~i~~~~  204 (269)
                      +|++|+++.+.+++.....+.. ++ +|++|+++    .|.+++.+     +..+..+++|+.|+++++.  ++......
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            4555555555555444444433 44 56666664    34454432     1224446666666665322  32211111


Q ss_pred             c-cCCCCCCEEEcCCCcccc--ccccccCcCCCceeeeccCccccc--c------cccceeecCCCCCCCC
Q psy10547        205 F-STLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFRGL--E------LSLKNLNLKNTKLKSV  264 (269)
Q Consensus       205 ~-~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~l~l~~n~~~~l--~------~~L~~L~l~~n~l~~~  264 (269)
                      + ..+++|+.|++++|.++.  ++..+..+++|+.|++++|.|++.  +      ++|++|++++|+++..
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            2 246789999999998873  566677889999999999987641  1      4899999999998753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=5.7e-11  Score=108.20  Aligned_cols=52  Identities=17%  Similarity=0.023  Sum_probs=30.1

Q ss_pred             ccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc---------cccccceeecC
Q psy10547        205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG---------LELSLKNLNLK  257 (269)
Q Consensus       205 ~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~---------l~~~L~~L~l~  257 (269)
                      +..+++|+.++++++....+|..+..+++|++|++++|.+.+         . ++|++|+++
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~  326 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PNLEVLETR  326 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-TTCCEEEEE
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-cCCCEEecc
Confidence            334455555555554444556566666677777777665432         2 366666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=8.8e-11  Score=106.91  Aligned_cols=113  Identities=12%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             ccEEEecCCCCcccCccccc-CCccccccccccc---c----------cccccEEEcCCCCCCccChhHHh----hcccc
Q psy10547        101 IKNLQLSHCRINSITPNAFR-HLDAIRNINENTF---N----------GIFIKNLQLSHCRINSITPNAFR----HLEFT  162 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~---~----------~~~L~~L~l~~n~i~~~~~~~~~----~l~~~  162 (269)
                      |++|++++|.+++.....+. .+++|+.|+....   .          ..+|++|++++|.+++..+..+.    .++ +
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~-~  185 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT-S  185 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC-C
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC-c
Confidence            66677776666654444443 4554444332211   0          11566666666665554443333    233 5


Q ss_pred             ccEEEccCCCCCccChhh----hcCCCCCCEEeccCC-CCCCCCCCcccCCCCCCEEEc
Q psy10547        163 LKHLNLQENDLEQVPVET----LRHLKNLTLIDLSKN-KIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       163 L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n-~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      |++|++++|. ..+....    ...+++|+.|++++| .++.++ ..+..+++|+.|++
T Consensus       186 L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          186 LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGT  242 (594)
T ss_dssp             CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEEC
T ss_pred             CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEccc
Confidence            6666666665 2222221    223466666666665 223322 23344455555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.88  E-value=2.5e-09  Score=97.28  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=66.0

Q ss_pred             cccEEEcCCCCCCccChhHHh----hccccccEEEccCC-CCCccChhhhcCCCCCCEEeccCCC---------------
Q psy10547        137 FIKNLQLSHCRINSITPNAFR----HLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNK---------------  196 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~----~l~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~---------------  196 (269)
                      +|+.|+++++. ..+....+.    .++ +|++|++++| .+.+ .+..+..+++|+.|+++.+.               
T Consensus       185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          185 SLVSLNISCLA-SEVSFSALERLVTRCP-NLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             CCCEEECTTCC-SCCCHHHHHHHHHHCT-TCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCcEEEecccC-CcCCHHHHHHHHHhCC-CCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            67788888776 333333333    335 7888888877 3333 23445556666666654331               


Q ss_pred             -----------CCCCCCCcc----cCCCCCCEEEcCCCcccc--ccccccCcCCCceeeeccCcccc---------cccc
Q psy10547        197 -----------IGKIPDDSF----STLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFRG---------LELS  250 (269)
Q Consensus       197 -----------i~~i~~~~~----~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~l~l~~n~~~~---------l~~~  250 (269)
                                 +.......+    ..+++|+.|++++|.++.  +...+..+++|+.|++++| +.+         . ++
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~-~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC-KD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC-TT
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC-CC
Confidence                       111111112    245678888888777653  3334566777777777776 321         2 36


Q ss_pred             cceeec
Q psy10547        251 LKNLNL  256 (269)
Q Consensus       251 L~~L~l  256 (269)
                      |++|++
T Consensus       340 L~~L~L  345 (594)
T 2p1m_B          340 LRELRV  345 (594)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            777777

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=2.4e-08  Score=77.34  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             cccEEEcCCC-CCCccChh----HHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCC----CC
Q psy10547        137 FIKNLQLSHC-RINSITPN----AFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIP----DD  203 (269)
Q Consensus       137 ~L~~L~l~~n-~i~~~~~~----~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~----~~  203 (269)
                      .+++|++++| .+......    .+.... +|++|++++|.+..-    ....+...++|++|++++|.|+...    ..
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            6778888888 77654332    333334 788888888877642    1234555677888888888776421    12


Q ss_pred             cccCCCCCCEEEc--CCCcccc-----ccccccCcCCCceeeeccCccc
Q psy10547        204 SFSTLNNLVTLKL--SDNNLTL-----YKNSFRGLELNNNLTLYKNSFR  245 (269)
Q Consensus       204 ~~~~l~~L~~L~L--~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~  245 (269)
                      .+...++|++|+|  ++|.++.     +.+.+...+.|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4555667888888  6777762     3445556667777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.57  E-value=2e-08  Score=85.96  Aligned_cols=179  Identities=14%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             hhhhhhhccCCCCcccEEEecCCCccc-----cCc----CCCCC-CcccEEEecCCCCcccCcccccCCccccccccccc
Q psy10547         64 FKATLNKHVNTKVPLDLLYINNSAIRN-----INE----NTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF  133 (269)
Q Consensus        64 ~~~~l~~~~~~~~~l~~l~l~~~~i~~-----l~~----~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~  133 (269)
                      ....+.........|+.|.+.......     +..    ..+.. ..|+.|.++++.-..+.+  +. ++          
T Consensus       127 ~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~----------  193 (362)
T 2ra8_A          127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RP----------  193 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CT----------
T ss_pred             HHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CC----------
Confidence            344454444445568888886653321     110    11122 248999998873112211  22 44          


Q ss_pred             ccccccEEEcCCCCCCccChhHHh--hccccccEEEccC--CC------CCccChhhh--cCCCCCCEEeccCCCCCCCC
Q psy10547        134 NGIFIKNLQLSHCRINSITPNAFR--HLEFTLKHLNLQE--ND------LEQVPVETL--RHLKNLTLIDLSKNKIGKIP  201 (269)
Q Consensus       134 ~~~~L~~L~l~~n~i~~~~~~~~~--~l~~~L~~L~l~~--n~------l~~~~~~~~--~~l~~L~~L~l~~n~i~~i~  201 (269)
                         +|++|++..+.+.......+.  .++ +|+.|+|+.  +.      +..+. ..+  ..+++|+.|++.+|.++...
T Consensus       194 ---~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          194 ---NLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             ---TCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             ---CCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHH
Confidence               788899988887654444444  466 899999853  11      11111 112  24789999999998875321


Q ss_pred             CCcc---cCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCccccc-----cccc-ceeecCCCC
Q psy10547        202 DDSF---STLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSFRGL-----ELSL-KNLNLKNTK  260 (269)
Q Consensus       202 ~~~~---~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~l-----~~~L-~~L~l~~n~  260 (269)
                      ...+   ..+++|+.|+|+.|.++.     ++..+..+++|+.|+++.|.+++.     ...+ ..+++++++
T Consensus       269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred             HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence            1122   246789999999999874     455566789999999999988752     1123 568888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.57  E-value=9.7e-07  Score=76.37  Aligned_cols=180  Identities=21%  Similarity=0.349  Sum_probs=102.3

Q ss_pred             cCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc---------ccccccccccEE
Q psy10547         72 VNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN---------ENTFNGIFIKNL  141 (269)
Q Consensus        72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~---------~~~~~~~~L~~L  141 (269)
                      +.....|+.+.+.++ +..++...|.+.. |+.+.+..+ ++.+...+|.++..|+.+.         ...+....++.+
T Consensus       158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i  235 (394)
T 4fs7_A          158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI  235 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred             hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence            344566777777644 4567777777654 777777655 6677777777777666443         122222345555


Q ss_pred             EcCCCCCCccChhHHhhccccccEEEccCCCCC--------------------ccChhhhcCCCCCCEEeccCCCCCCCC
Q psy10547        142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLE--------------------QVPVETLRHLKNLTLIDLSKNKIGKIP  201 (269)
Q Consensus       142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~--------------------~~~~~~~~~l~~L~~L~l~~n~i~~i~  201 (269)
                      .+... ++.+...+|.... +++.+.+..+...                    .++...|..+.+|+.+.+.++ ++.|+
T Consensus       236 ~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~  312 (394)
T 4fs7_A          236 IIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIG  312 (394)
T ss_dssp             EECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred             EECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceec
Confidence            55322 3334444444444 4555544433211                    133345556666777766554 66666


Q ss_pred             CCcccCCCCCCEEEcCCCcccccc-ccccCcCCCceeeeccC-------cccccccccceeecCC
Q psy10547        202 DDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYKN-------SFRGLELSLKNLNLKN  258 (269)
Q Consensus       202 ~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n-------~~~~l~~~L~~L~l~~  258 (269)
                      ..+|.++.+|+.+.+..+ ++.++ .+|.++.+|+.+.+..+       .|.+.. +|+.+++..
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~-~L~~i~lp~  375 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCI-NLKKVELPK  375 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCT-TCCEEEEEG
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCC-CCCEEEECC
Confidence            667777777777777543 55443 46666777777665433       344443 666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=2.9e-08  Score=76.87  Aligned_cols=111  Identities=17%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             ccEEEecCC-CCcccCcccccCC-cccccccccccccccccEEEcCCCCCCccChh----HHhhccccccEEEccCCCCC
Q psy10547        101 IKNLQLSHC-RINSITPNAFRHL-DAIRNINENTFNGIFIKNLQLSHCRINSITPN----AFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus       101 L~~L~l~~n-~l~~~~~~~~~~l-~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~l~~~L~~L~l~~n~l~  174 (269)
                      |++|++++| .+.......+... ...          .++++|+|++|.+......    .+.... +|++|++++|.+.
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~----------~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~  106 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFIS  106 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTC----------CSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCC
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhC----------CCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCC
Confidence            677777776 6665433333221 100          0566677777766653322    233334 6777777777666


Q ss_pred             cc----ChhhhcCCCCCCEEec--cCCCCCCCCC----CcccCCCCCCEEEcCCCccc
Q psy10547        175 QV----PVETLRHLKNLTLIDL--SKNKIGKIPD----DSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       175 ~~----~~~~~~~l~~L~~L~l--~~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~  222 (269)
                      ..    ....+...++|+.|++  ++|.++....    ..+...++|+.|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            42    1234555566777777  6666653221    23334456777777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.55  E-value=1.7e-06  Score=74.80  Aligned_cols=118  Identities=19%  Similarity=0.323  Sum_probs=63.7

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .|+.+.+..+ +..+...+|.+.. +|+.+.+. +.++.+...+|..+.+|+.+++..+ ++.|...+|.++.+|+.+.+
T Consensus       266 ~L~~i~lp~~-~~~I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDS-VVSIGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTT-CCEECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccc-cceecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            3444444332 2334445555555 66666664 4456666667777777777777654 66666667777777777777


Q ss_pred             CCCcccccc-ccccCcCCCceeeeccCcc-----cccccccceeecCCCC
Q psy10547        217 SDNNLTLYK-NSFRGLELNNNLTLYKNSF-----RGLELSLKNLNLKNTK  260 (269)
Q Consensus       217 ~~n~l~~~p-~~~~~l~~L~~l~l~~n~~-----~~l~~~L~~L~l~~n~  260 (269)
                      ..+ ++.+. .+|.++++|+.+++.++..     ..- .+|+.+.+..|.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~-~~L~~i~i~~~~  389 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTD-SGLQNLPVAPGS  389 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCC-CCC---------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhcc-CCCCEEEeCCCC
Confidence            544 44443 4666777777777665422     112 355555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.52  E-value=9e-07  Score=76.56  Aligned_cols=98  Identities=19%  Similarity=0.255  Sum_probs=65.0

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .++.+....+.   +...+|.... +|+.+.+..+ ++.+...+|..+.+|+.+++.++ ++.|...+|.++.+|+.+.+
T Consensus       277 ~l~~~~~~~~~---i~~~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          277 GLKKVIYGSVI---VPEKTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             TCCEEEECSSE---ECTTTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred             ccceeccCcee---eccccccccc-cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence            44444444332   3334566666 7777777643 66777777777778888877644 77777777777778888877


Q ss_pred             CCCccccc-cccccCcCCCceeeecc
Q psy10547        217 SDNNLTLY-KNSFRGLELNNNLTLYK  241 (269)
Q Consensus       217 ~~n~l~~~-p~~~~~l~~L~~l~l~~  241 (269)
                      ..+ ++.+ ..+|.++.+|+.+++..
T Consensus       351 p~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          351 PLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             Ccc-ccEehHHHhhCCCCCCEEEECC
Confidence            666 5554 34677777787777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.52  E-value=3.2e-06  Score=72.61  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=64.5

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL  216 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L  216 (269)
                      .|+.+.+..+ ++.+...+|.+.. +++.+.+.. .+..+....|..+.+|+.+.+.++.++.|++.+|.++.+|+.+.+
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCT-TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-ccEeCccccceee-hhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            5566666554 5666666666666 677776653 356666666777777777777776677777777777777777777


Q ss_pred             CCCcccccc-ccccCcCCCceeeec
Q psy10547        217 SDNNLTLYK-NSFRGLELNNNLTLY  240 (269)
Q Consensus       217 ~~n~l~~~p-~~~~~l~~L~~l~l~  240 (269)
                      ..+ ++.+. .+|.++.+|+.+.+.
T Consensus       318 p~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          318 PTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence            544 44443 356666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.51  E-value=5e-07  Score=78.19  Aligned_cols=136  Identities=20%  Similarity=0.350  Sum_probs=97.0

Q ss_pred             ccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEE
Q psy10547         88 IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHL  166 (269)
Q Consensus        88 i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L  166 (269)
                      +..+...+|.... |+.+.+..+ +..+...+|.++.             .|+.+.+. +.++.+...+|.+.. +|+.+
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~-------------~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i  316 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCP-------------ALQDIEFS-SRITELPESVFAGCI-SLKSI  316 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCT-------------TCCEEECC-TTCCEECTTTTTTCT-TCCEE
T ss_pred             ceEcccceeeecccccEEecccc-cceecCccccccc-------------ccccccCC-CcccccCceeecCCC-CcCEE
Confidence            4445555555544 666665433 3345556666666             77888885 568888889999998 99999


Q ss_pred             EccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCc
Q psy10547        167 NLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNS  243 (269)
Q Consensus       167 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~  243 (269)
                      .+.. .++.+...+|..+.+|+.+.+..+ ++.|...+|.++.+|+.+.+.++....  .++....+|+.+.+..+.
T Consensus       317 ~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          317 DIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             ECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             EeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            9985 488898899999999999999765 899999999999999999999875432  356677788888776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.49  E-value=1.3e-06  Score=74.95  Aligned_cols=139  Identities=14%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547         75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP  153 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~  153 (269)
                      ...++.+.+..+ +..+....|.... |+.+.+..+ ++.+...+|.++.             +++.+.+.. .+..+..
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-------------~l~~i~l~~-~i~~i~~  279 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-------------ALKTLNFYA-KVKTVPY  279 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-------------TCCEEEECC-CCSEECT
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-------------hhccccccc-cceeccc
Confidence            334555555433 5566666666554 777777654 6777777777777             677788864 4777888


Q ss_pred             hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccCcC
Q psy10547        154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLE  232 (269)
Q Consensus       154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~  232 (269)
                      .+|.+.. +|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+..+ ++.+. .+|.+..
T Consensus       280 ~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          280 LLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            8999988 9999999999999999999999999999999765 88899889999999999998765 55543 3555553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=6.9e-07  Score=76.44  Aligned_cols=122  Identities=22%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc--CCCCCCEEeccC--CC------CCCCCCCcc-
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR--HLKNLTLIDLSK--NK------IGKIPDDSF-  205 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~------i~~i~~~~~-  205 (269)
                      +|+.|.++++.-..+.+  +. .+ +|++|++..+.+..-....+.  .+++|+.|+|+.  |.      +..+.+ .+ 
T Consensus       173 ~L~~L~L~g~~~l~l~~--~~-~~-~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~  247 (362)
T 2ra8_A          173 LLNNLKIKGTNNLSIGK--KP-RP-NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFS  247 (362)
T ss_dssp             TCCEEEEECCBTCBCCS--CB-CT-TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSC
T ss_pred             CCcEEEEeCCCCceecc--cc-CC-CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHh
Confidence            78889998873222322  32 55 899999999887654333443  689999999853  22      111211 22 


Q ss_pred             -cCCCCCCEEEcCCCcccc-ccccc---cCcCCCceeeeccCcccc-----cc------cccceeecCCCCCCC
Q psy10547        206 -STLNNLVTLKLSDNNLTL-YKNSF---RGLELNNNLTLYKNSFRG-----LE------LSLKNLNLKNTKLKS  263 (269)
Q Consensus       206 -~~l~~L~~L~L~~n~l~~-~p~~~---~~l~~L~~l~l~~n~~~~-----l~------~~L~~L~l~~n~l~~  263 (269)
                       ..+++|+.|++.+|.+.. .+..+   ..+++|++|+++.|.+.+     +.      ++|+.|++++|.|+.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence             246899999999999873 22222   357899999999998876     11      479999999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.30  E-value=6.6e-07  Score=64.99  Aligned_cols=61  Identities=8%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCc--hhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYP--LFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHC  109 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~--~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n  109 (269)
                      ||..|.|..     ..|.|. ..++.  .+|..+|..      ++.|+|++|.|..++.+.|..+. |+.|+|++|
T Consensus         2 CP~~C~C~~-----~~v~Cs-~~~L~~~~vP~~lp~~------l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A            2 CPAPCSCAG-----TLVDCG-RRGLTWASLPTAFPVD------TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CCTTCEEET-----TEEECC-SSCCCTTTSCSCCCTT------CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCCEEcC-----CEEEeC-CCCCccccCCCCCCcC------CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            668899974     578898 34444  444444433      24444444444444444443332 333333333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=2e-07  Score=76.15  Aligned_cols=62  Identities=26%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             hccccccEEEccCCCCCccCh--hhhcCCCCCCEEeccCCCCCCCCCCcccCCC--CCCEEEcCCCccc
Q psy10547        158 HLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN--NLVTLKLSDNNLT  222 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~  222 (269)
                      .++ +|+.|+|++|+++++..  ..+..+++|+.|+|++|.++++.  .+..+.  +|+.|+|++|.++
T Consensus       168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTG
T ss_pred             hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCc
Confidence            344 66666666666666432  34455666666666666666552  122222  6666666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=3.3e-07  Score=74.87  Aligned_cols=80  Identities=21%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             EEccCCCCCccC---hhhhcCCCCCCEEeccCCCCCCCCC--CcccCCCCCCEEEcCCCccccccccccCcC--CCceee
Q psy10547        166 LNLQENDLEQVP---VETLRHLKNLTLIDLSKNKIGKIPD--DSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LNNNLT  238 (269)
Q Consensus       166 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~i~~i~~--~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~--~L~~l~  238 (269)
                      ++++.|....+.   ......+++|+.|+|++|.++.++.  ..+..+++|+.|+|++|.|+.+. .+..+.  .|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence            566677544332   2222567899999999999988753  34567889999999999998763 344444  899999


Q ss_pred             eccCcccc
Q psy10547        239 LYKNSFRG  246 (269)
Q Consensus       239 l~~n~~~~  246 (269)
                      +++|.+.+
T Consensus       227 L~~Npl~~  234 (267)
T 3rw6_A          227 LDGNSLCD  234 (267)
T ss_dssp             CTTSTTGG
T ss_pred             ccCCcCcc
Confidence            99998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=1.9e-06  Score=65.61  Aligned_cols=94  Identities=16%  Similarity=0.297  Sum_probs=58.9

Q ss_pred             ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC-CCCccChhHHhhc---cccccE
Q psy10547         90 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC-RINSITPNAFRHL---EFTLKH  165 (269)
Q Consensus        90 ~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l---~~~L~~  165 (269)
                      .+|......+.|+.|+++++.++...-..+.+++             +|++|+|+++ .+++..-..+..+   .++|++
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~-------------~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~  118 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQ-------------YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE  118 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCS-------------CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCE
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCC-------------CCCEEEeCCCCccCHHHHHHHHhcccccCCCCE
Confidence            3444444556688888888887765555556666             6777888877 4666544445442   115777


Q ss_pred             EEccCCC-CCccChhhhcCCCCCCEEeccCCC
Q psy10547        166 LNLQEND-LEQVPVETLRHLKNLTLIDLSKNK  196 (269)
Q Consensus       166 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  196 (269)
                      |++++|. ++.---..+..+++|+.|+++++.
T Consensus       119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            7777764 664333445667777777777763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=3.3e-06  Score=64.34  Aligned_cols=82  Identities=21%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCC-CCccChhhhcCC----CCCCEEeccCCC-CCCCCCCcccCCCC
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHL----KNLTLIDLSKNK-IGKIPDDSFSTLNN  210 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~i~~~~~~~l~~  210 (269)
                      .|+.||++++.++...-..+.+++ +|++|++++|. ++.-.-..+..+    ++|+.|++++|. ++.-.-..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            577777777777766656666666 77777777774 554332334433    357777777763 55433334556677


Q ss_pred             CCEEEcCCC
Q psy10547        211 LVTLKLSDN  219 (269)
Q Consensus       211 L~~L~L~~n  219 (269)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            777777766

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=4e-05  Score=59.43  Aligned_cols=107  Identities=12%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             cccEEEcCCC-CCCccCh----hHHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCCC----C
Q psy10547        137 FIKNLQLSHC-RINSITP----NAFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIPD----D  203 (269)
Q Consensus       137 ~L~~L~l~~n-~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~~----~  203 (269)
                      .|+.|+|++| .|.....    .++..-. .|+.|+|++|.+...    ....+...+.|+.|+|++|.|+....    .
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            6777888775 6664332    2333333 678888888877642    23445566777788888777753221    2


Q ss_pred             cccCCCCCCEEEcCCC---ccc-----cccccccCcCCCceeeeccCcc
Q psy10547        204 SFSTLNNLVTLKLSDN---NLT-----LYKNSFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       204 ~~~~l~~L~~L~L~~n---~l~-----~~p~~~~~l~~L~~l~l~~n~~  244 (269)
                      ++..-..|+.|+|++|   .+.     .+.+.+...+.|+.|+++.|.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3444556777777654   333     2344556666777777766544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.47  E-value=0.00029  Score=50.89  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             EEEccCCCCC--ccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547        165 HLNLQENDLE--QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       165 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l  221 (269)
                      .++.+++.++  .+|.. +  .++++.|+|++|+|+.++++.|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555  45432 1  13466666666666666666666666666666666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=8.4e-05  Score=57.59  Aligned_cols=113  Identities=11%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             cccEEEecCC-CCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh----hccccccEEEccCCCCC
Q psy10547        100 FIKNLQLSHC-RINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR----HLEFTLKHLNLQENDLE  174 (269)
Q Consensus       100 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~----~l~~~L~~L~l~~n~l~  174 (269)
                      .|++|+++++ .|......++...-.-..         .|+.|+|++|.+.+....++.    .-. +|++|+|++|.|.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~---------~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSK---------HIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLT  111 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCS---------CCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCC
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCC---------CcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCC
Confidence            3777777774 665543333332111111         577778887777754433332    334 6778888887777


Q ss_pred             cc----ChhhhcCCCCCCEEeccCCCCCCCCC-------CcccCCCCCCEEEcCCCccc
Q psy10547        175 QV----PVETLRHLKNLTLIDLSKNKIGKIPD-------DSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       175 ~~----~~~~~~~l~~L~~L~l~~n~i~~i~~-------~~~~~l~~L~~L~L~~n~l~  222 (269)
                      .-    ....+.....|+.|++++|....+..       .++..-+.|+.|+++.|.+.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            42    22345566677778776543212221       23444566777777766553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.53  E-value=0.48  Score=31.98  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             CCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCC
Q psy10547        171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN  219 (269)
Q Consensus       171 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n  219 (269)
                      ..++.+...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            4556666677777777777777764 67777777777777777777653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.52  E-value=2.1  Score=28.69  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547        194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN  242 (269)
Q Consensus       194 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n  242 (269)
                      +..++.|...+|.++.+|+.+.+..+--..-..+|.++.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence            4568899999999999999999987644344568999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 14/160 (8%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFI------------KNLQLSHCRI 148
            + + L   RI+ +   +FR    +  +  ++     I            +     + ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
            S+ P  F  L   L  L+L    L+++     R L  L  + L  N +  +PDD+F  L
Sbjct: 94  RSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 209 NNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSFRGL 247
            NL  L L  N + ++ + +FRGL   + L L++N    +
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 78  LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFN-- 134
             LL + N+ I  I +  F  +  +  L L + +I+ I+P AF  L  +  +  +     
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 135 ------GIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQENDLEQVPVETLRHLKNL 187
                    ++ L++    I  +  + F  L +  +  L         +     + +K L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
           + I ++   I  IP        +L  L L  N +T
Sbjct: 153 SYIRIADTNITTIPQGLPP---SLTELHLDGNKIT 184

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
               L+LQ N + ++     ++LKNL  + L  NKI KI   +F+ L  L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 222 T 222
            
Sbjct: 92  K 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
              L L + +I  I    F++L+  L  L L  N + ++       L  L  + LSKN++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTL----YKNSFRGLELNNNLTLYKNSFRGLELSLKN 253
            ++P+    TL  L   +     +        N    +EL  N         G    +K 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 254 LNLKN 258
           L+   
Sbjct: 152 LSYIR 156

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 17/185 (9%)

Query: 71  HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-------D 123
            +N  + ++L      +    N        +  ++++   I +I       L       +
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181

Query: 124 AIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
            I  ++  +  G+             S   N        L+ L+L  N L +VP      
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-AD 240

Query: 184 LKNLTLIDLSKNKIGKIPDDSF------STLNNLVTLKLSDNNLTLYK---NSFRGLELN 234
            K + ++ L  N I  I  + F      +   +   + L  N +  ++   ++FR + + 
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 235 NNLTL 239
             + L
Sbjct: 301 AAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 78  LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP----NAFRHLDAIRNINENTF 133
           LD L +N + +++I     +   + +L L++ +I+++ P         L    N   N  
Sbjct: 221 LDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
               +  L       N +   +       L +L L  N++  +    +  L  L  +  +
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA 337

Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
            NK+  +   S + L N+  L    N ++
Sbjct: 338 NNKVSDVS--SLANLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-------IKNLQLSHCRINSITP 153
           +  L+L   +I++I+P A         +NEN    I        +  L L    I+ I+P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213
                L   L+ L    N +  V   +L +L N+  +    N+I  +     + L  +  
Sbjct: 325 --VSSLT-KLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQ 377

Query: 214 LKLSDN 219
           L L+D 
Sbjct: 378 LGLNDQ 383

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
           +        N   +     +      N+LE++P +         ++D+S+ +I  +P   
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220

Query: 205 FSTLNNLVTLKLSDNNLT 222
              L  L        NL 
Sbjct: 221 LENLKKLRARST--YNLK 236

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
              +N  + +L  +P +     K+ T++ LS+N +      +      L  L L    
Sbjct: 12  HLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)

Query: 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 201
           +L                   L       N              +L  +++S NK+ ++P
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300

Query: 202 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKN 258
               +    L  L  S N+L       + L+    L +  N  R       S+++L + +
Sbjct: 301 ----ALPPRLERLIASFNHLAEVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNS 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=195.47  Aligned_cols=217  Identities=25%  Similarity=0.446  Sum_probs=183.8

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT  115 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~  115 (269)
                      ||.+|.|..  ..+..|.|.+ .++..+|..+|..      ++.|++++|.|..++...|.... |++|++++|++..+.
T Consensus         2 cp~~C~C~~--~~~~~v~c~~-~~L~~iP~~ip~~------~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~   72 (284)
T d1ozna_           2 CPGACVCYN--EPKVTTSCPQ-QGLQAVPVGIPAA------SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID   72 (284)
T ss_dssp             CCTTCEEEC--SSSCEEECCS-SCCSSCCTTCCTT------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cCCCCEEcC--CCCeEEEcCC-CCCCccCCCCCCC------CCEEECcCCcCCCCCHHHhhccccccccccccccccccc
Confidence            668899963  3356899984 4566666666654      49999999999999999998887 999999999999999


Q ss_pred             cccccCCccccccc-----------cccccc-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcC
Q psy10547        116 PNAFRHLDAIRNIN-----------ENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH  183 (269)
Q Consensus       116 ~~~~~~l~~L~~l~-----------~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~  183 (269)
                      +..+.++..++.+.           ...|.+ .+|++|++++|.+..+.+..+.... +|+.+++++|.++++++..|..
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~N~l~~i~~~~f~~  151 (284)
T d1ozna_          73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRD  151 (284)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc-ccchhhhccccccccChhHhcc
Confidence            98888777665432           334444 3799999999999988888888887 8999999999999999888999


Q ss_pred             CCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceee
Q psy10547        184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLN  255 (269)
Q Consensus       184 l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~  255 (269)
                      +++|+.|++++|.++.+++.+|.++++|+.+++++|+++.+ |..|..+++|+.|++++|.+.+++       ++|++|+
T Consensus       152 ~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence            99999999999999999988999999999999999999865 778999999999999999998865       5799999


Q ss_pred             cCCCCCCC
Q psy10547        256 LKNTKLKS  263 (269)
Q Consensus       256 l~~n~l~~  263 (269)
                      +++|++..
T Consensus       232 l~~N~l~C  239 (284)
T d1ozna_         232 LNDNPWVC  239 (284)
T ss_dssp             CCSSCEEC
T ss_pred             ecCCCCCC
Confidence            99998763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.8e-26  Score=191.23  Aligned_cols=216  Identities=22%  Similarity=0.372  Sum_probs=165.5

Q ss_pred             cccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc
Q psy10547         35 SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS  113 (269)
Q Consensus        35 ~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~  113 (269)
                      ..||..|.|.+     .+++|.+ .++..+|..+|.      .+++|++++|.|..++...|.... |++|++++|.+..
T Consensus         2 ~~~p~~c~c~~-----~~~~C~~-~~L~~lP~~l~~------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~   69 (305)
T d1xkua_           2 PVCPFRCQCHL-----RVVQCSD-LGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK   69 (305)
T ss_dssp             CCCCTTCEEET-----TEEECTT-SCCCSCCCSCCT------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCEecC-----CEEEecC-CCCCccCCCCCC------CCCEEECcCCcCCCcChhHhhccccccccccccccccc
Confidence            35668899987     6799994 444455445554      359999999999999998887765 9999999999999


Q ss_pred             cCcccccCCccccccc--ccccccc-------------------------------------------------------
Q psy10547        114 ITPNAFRHLDAIRNIN--ENTFNGI-------------------------------------------------------  136 (269)
Q Consensus       114 ~~~~~~~~l~~L~~l~--~~~~~~~-------------------------------------------------------  136 (269)
                      +.+.+|.++++|+.|+  .+.++..                                                       
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l  149 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  149 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             cchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccc
Confidence            9998899988887554  1212111                                                       


Q ss_pred             -cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 -~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                       +++.+++++|.++.++...   .+ ++++|++++|......+..|..++.++.|++++|.++.+++.++.++++|++|+
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~---~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGL---PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSC---CT-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCCccccCccc---CC-ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence             2445555555554443221   23 677777777777777777888889999999999999998888888999999999


Q ss_pred             cCCCccccccccccCcCCCceeeeccCcccccc-------------cccceeecCCCCCCC--CCC
Q psy10547        216 LSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNLKNTKLKS--VTP  266 (269)
Q Consensus       216 L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n~l~~--~p~  266 (269)
                      |++|.|+.+|+++..+++|+.|++++|+++.++             .+|+.|+|++|+++.  ++|
T Consensus       226 L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            999999999989999999999999999888753             468899999999873  444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-25  Score=180.01  Aligned_cols=198  Identities=24%  Similarity=0.313  Sum_probs=148.3

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA  118 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~  118 (269)
                      .|.|... ....+|.|+ ..++..+|..+|+      +++.|++++|.|..++.+.|..+. |++|++++|+++.+.+  
T Consensus         3 ~C~~~~~-~~~~~v~C~-~~~L~~iP~~lp~------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--   72 (266)
T d1p9ag_           3 ICEVSKV-ASHLEVNCD-KRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--   72 (266)
T ss_dssp             SSEEECS-TTCCEEECT-TSCCSSCCSCCCT------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--
T ss_pred             ccEEccc-CCCeEEEcc-CCCCCeeCcCcCc------CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--
Confidence            4888743 344679998 3444455555554      359999999999999999988776 9999999999998743  


Q ss_pred             ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547        119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG  198 (269)
Q Consensus       119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  198 (269)
                      +..++             +|++|++++|+++... ..+..++ +|++|++++|.+..+....+..+.+++.|++++|.++
T Consensus        73 ~~~l~-------------~L~~L~Ls~N~l~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          73 DGTLP-------------VLGTLDLSHNQLQSLP-LLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             CSCCT-------------TCCEEECCSSCCSSCC-CCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ccccc-------------cccccccccccccccc-ccccccc-ccccccccccccceeeccccccccccccccccccccc
Confidence            56777             6777788888777653 3566676 7888888888777777777777777888888888777


Q ss_pred             CCCCCcccCCCCCCEEEcCCCcccccc-ccccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547        199 KIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK  262 (269)
Q Consensus       199 ~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~  262 (269)
                      .+++..+..+++++.+++++|+++.++ ..+..+++|++|++++|+++.+|      ++|+.|+|++|++.
T Consensus       138 ~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             eeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            777777777777888888888777654 35677777888888888777765      46777888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2e-24  Score=168.19  Aligned_cols=182  Identities=20%  Similarity=0.337  Sum_probs=118.6

Q ss_pred             ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcc-c
Q psy10547         36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINS-I  114 (269)
Q Consensus        36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~-~  114 (269)
                      +||++|.|.+     ..|.|.+ .++                           ..||.+++  ..+++|++++|+|+. +
T Consensus         1 ~CP~~C~C~~-----~~v~Cs~-~~L---------------------------~~iP~~lp--~~l~~L~Ls~N~i~~~~   45 (192)
T d1w8aa_           1 DCPAMCHCEG-----TTVDCTG-RGL---------------------------KEIPRDIP--LHTTELLLNDNELGRIS   45 (192)
T ss_dssp             CCCTTSEEET-----TEEECTT-SCC---------------------------SSCCSCCC--TTCSEEECCSCCCCSBC
T ss_pred             CcCCCCEEcC-----CEEEEeC-CCc---------------------------CccCCCCC--CCCCEEEeCCCCCcccc
Confidence            4778899987     4688872 333                           33333332  124667777777764 4


Q ss_pred             CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547        115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK  194 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  194 (269)
                      .+..|.+++             +|++|++++|.+..+.+..|..+. +|++|++++|+++.+++++|.++++|++|+|++
T Consensus        46 ~~~~f~~l~-------------~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          46 SDGLFGRLP-------------HLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CSCSGGGCT-------------TCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             cccccCCCc-------------eEeeeecccccccccccccccccc-ccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            455667777             677777777777777777777777 778888888887777777777778888888888


Q ss_pred             CCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc-cc---cccceeecCCCCCCCCCC
Q psy10547        195 NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG-LE---LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       195 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~-l~---~~L~~L~l~~n~l~~~p~  266 (269)
                      |+|+.+++++|..+++|++|+|++|.+....+...-...++.+.+..+.+.. .|   +.++.++++.|.+.-.++
T Consensus       112 N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             ccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCCCC
Confidence            8887777777777778888888877776433211112224444455554432 22   245556777777765444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.6e-22  Score=161.88  Aligned_cols=173  Identities=19%  Similarity=0.236  Sum_probs=153.5

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      .+..++.+++.+..+|.++.  ..+++|++++|+|+++.+.+|.+++             +|++|++++|.++.+++  +
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~-------------~L~~L~L~~N~l~~l~~--~   73 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-------------RLTQLNLDRAELTKLQV--D   73 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT-------------TCCEEECTTSCCCEEEC--C
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccc-------------ccccccccccccccccc--c
Confidence            34567999999999998775  3479999999999999889999999             88999999999998754  5


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCc
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNN  235 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~  235 (269)
                      ..++ +|++|++++|+++..+. .+..+++|+.|++++|.+..++...+..+.+++.|++++|.++.++. .+..++.++
T Consensus        74 ~~l~-~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          74 GTLP-VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             SCCT-TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccc-ccccccccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccch
Confidence            6777 99999999999998864 58889999999999999999998889999999999999999998765 567899999


Q ss_pred             eeeeccCcccccc-------cccceeecCCCCCCCCCCCC
Q psy10547        236 NLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPYW  268 (269)
Q Consensus       236 ~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~~  268 (269)
                      .+++++|++++++       ++|++|||++|+|+.+|+++
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~  191 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChhH
Confidence            9999999988765       58999999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.9e-21  Score=162.30  Aligned_cols=197  Identities=16%  Similarity=0.237  Sum_probs=141.8

Q ss_pred             hhhhccCCCCcccEEEecC-CCcc-ccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--ccc--------cc
Q psy10547         67 TLNKHVNTKVPLDLLYINN-SAIR-NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT--------FN  134 (269)
Q Consensus        67 ~l~~~~~~~~~l~~l~l~~-~~i~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~--------~~  134 (269)
                      .+|..+.....|++|++++ |.+. .+|..+....+|++|++++|++.++.+..+..+..|+.++  .+.        +.
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            3566777788899999986 6655 7887766666699999999999999888888888777654  111        11


Q ss_pred             c-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCcc-----------------------ChhhhcCCCCCCEE
Q psy10547        135 G-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV-----------------------PVETLRHLKNLTLI  190 (269)
Q Consensus       135 ~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L  190 (269)
                      . ..++.+++++|.+++..|..+..+...++.+++++|++++.                       .+..+..+++++.+
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             cCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1 26777788877777666666665552236666666665543                       33444556777888


Q ss_pred             eccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccccCcCCCceeeeccCcccc-cc-----cccceeecCCCC-CC
Q psy10547        191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE-----LSLKNLNLKNTK-LK  262 (269)
Q Consensus       191 ~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~-----~~L~~L~l~~n~-l~  262 (269)
                      ++++|.+...++ .+..+++|+.|++++|+++ .+|+.++++++|++|++++|+|++ +|     ++|+.+++++|+ +.
T Consensus       227 ~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence            888887766554 5677788888888888888 588888888888888888888874 44     467778888887 45


Q ss_pred             CC
Q psy10547        263 SV  264 (269)
Q Consensus       263 ~~  264 (269)
                      +.
T Consensus       306 g~  307 (313)
T d1ogqa_         306 GS  307 (313)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=151.99  Aligned_cols=196  Identities=18%  Similarity=0.248  Sum_probs=111.1

Q ss_pred             cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc-cCcc
Q psy10547         40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS-ITPN  117 (269)
Q Consensus        40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~-~~~~  117 (269)
                      .|.|..     ..+.|. ..++..+|+.+|.      +++.|++++|.|..++...|.++. |++|++++|.+.. +.+.
T Consensus         5 ~C~C~~-----~~i~c~-~~~l~~iP~~l~~------~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~   72 (242)
T d1xwdc1           5 ICHCSN-----RVFLCQ-ESKVTEIPSDLPR------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   72 (242)
T ss_dssp             SEEECS-----SEEEEE-SCSCSSCCSCSCS------CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS
T ss_pred             cCCCcC-----CEEEEe-CCCCCCcCCCCCC------CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc
Confidence            499975     579998 3445555555554      359999999999999999998876 9999999999875 5677


Q ss_pred             cccCCccccccc-----------cccccc-ccccEEEcCCCCCCccChhH-HhhccccccEEEccCCCCCccChhhhcCC
Q psy10547        118 AFRHLDAIRNIN-----------ENTFNG-IFIKNLQLSHCRINSITPNA-FRHLEFTLKHLNLQENDLEQVPVETLRHL  184 (269)
Q Consensus       118 ~~~~l~~L~~l~-----------~~~~~~-~~L~~L~l~~n~i~~~~~~~-~~~l~~~L~~L~l~~n~l~~~~~~~~~~l  184 (269)
                      +|.++++++++.           .+.|.+ .+|+++++++|.+....+.. +..+. .+..+...++.+..+....|..+
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~-~l~~~~~~n~~l~~i~~~~~~~~  151 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGL  151 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS-CEEEEEESCTTCCEECTTSSTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc-ccccccccccccccccccccccc
Confidence            888888554332           111111 14555555555544432211 11222 33333444444444444444433


Q ss_pred             C-CCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc
Q psy10547        185 K-NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE  248 (269)
Q Consensus       185 ~-~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~  248 (269)
                      + .+..+++.+|+++.++...+......+.+.+++|+++.+|. .+.++++|+.|++++|.++.+|
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            2 44555555555555554433222222223345555555543 3455555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.3e-20  Score=151.36  Aligned_cols=186  Identities=23%  Similarity=0.341  Sum_probs=158.4

Q ss_pred             cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccc--cccccc---------cccEEEc-CCC
Q psy10547         79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINE--NTFNGI---------FIKNLQL-SHC  146 (269)
Q Consensus        79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~--~~~~~~---------~L~~L~l-~~n  146 (269)
                      ..+++++..+..+|..+..  .+++|++++|+|+.+.+.+|.++++|+.|+.  +.+...         .+..+.. ..+
T Consensus        14 ~~v~c~~~~L~~iP~~ip~--~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTCCT--TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCCCC--CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4578888899999987653  3699999999999999999999999987763  222221         4555554 566


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-  225 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-  225 (269)
                      .++.+.+..|+++. +|++|++++|.+..+....+....+|+.+++++|.++.+++++|..+++|+.|++++|+++.++ 
T Consensus        92 ~~~~l~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccchhhcccc-cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            88888888999998 9999999999999988888999999999999999999999889999999999999999999764 


Q ss_pred             ccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547        226 NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY  267 (269)
Q Consensus       226 ~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~  267 (269)
                      .++.++++|+.+++++|.+.+++       +++++||+++|++.++++.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence            57889999999999999887753       4899999999999998763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=6.2e-19  Score=146.20  Aligned_cols=183  Identities=20%  Similarity=0.329  Sum_probs=119.9

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc----------cccccc-ccccEEEcCCC
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN----------ENTFNG-IFIKNLQLSHC  146 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~----------~~~~~~-~~L~~L~l~~n  146 (269)
                      .++++.++..+..+|.+.+.  .+++|++++|+|+.+.+.+|.++++|++|+          .+.|.. .+++.|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~--~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCT--TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCCC--CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            47899999999999987753  489999999999999988999999776543          222322 25667777766


Q ss_pred             CCCccChh-----------------------------------------------HHhhccccccEEEccCCCCCccChh
Q psy10547        147 RINSITPN-----------------------------------------------AFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       147 ~i~~~~~~-----------------------------------------------~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      +++.++..                                               .|..+. +++++++++|.+..++..
T Consensus        90 ~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~~l~~~  168 (305)
T d1xkua_          90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIPQG  168 (305)
T ss_dssp             CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSCCSS
T ss_pred             ccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccc-ccCccccccCCccccCcc
Confidence            65543211                                               111222 333344444433333321


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc------cccc
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE------LSLK  252 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~------~~L~  252 (269)
                         ..++|+.|++++|.+....+..+..++.++.|++++|.++.+ +..+.++++|+.|++++|.++.+|      ++|+
T Consensus       169 ---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         169 ---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             ---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             ---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCC
Confidence               124455555555555444445666667777888888877765 456777788888888888777654      5788


Q ss_pred             eeecCCCCCCCCCC
Q psy10547        253 NLNLKNTKLKSVTP  266 (269)
Q Consensus       253 ~L~l~~n~l~~~p~  266 (269)
                      +|++++|+|+.++.
T Consensus       246 ~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         246 VVYLHNNNISAIGS  259 (305)
T ss_dssp             EEECCSSCCCCCCT
T ss_pred             EEECCCCccCccCh
Confidence            88888888888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=8e-20  Score=152.24  Aligned_cols=178  Identities=20%  Similarity=0.241  Sum_probs=135.9

Q ss_pred             hhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccccccc-------
Q psy10547         67 TLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI-------  136 (269)
Q Consensus        67 ~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~-------  136 (269)
                      .+|..+.++..|++|++++|.+..++...+.... |+.+++++|.+.+..|..+..++.++.++  .+.+.+.       
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence            4667777888999999999999988877766555 88888888888887787788887777543  2222211       


Q ss_pred             --c-ccEEEcCCC-----------------------CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEE
Q psy10547        137 --F-IKNLQLSHC-----------------------RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI  190 (269)
Q Consensus       137 --~-L~~L~l~~n-----------------------~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  190 (269)
                        . ++.+++++|                       ...+..+..+..+. +++.++++++.+.+.++ .+..+++|+.|
T Consensus       172 l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-ccccccccccc
Confidence              1 234444444                       44444555555566 89999999999887765 48888999999


Q ss_pred             eccCCCCC-CCCCCcccCCCCCCEEEcCCCccc-cccccccCcCCCceeeeccCc-ccccc
Q psy10547        191 DLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS-FRGLE  248 (269)
Q Consensus       191 ~l~~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~~~l~~L~~l~l~~n~-~~~l~  248 (269)
                      ++++|+++ .+|+ .+..+++|++|+|++|+|+ .+| .++++++|+.+++.+|+ +.+.|
T Consensus       250 ~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         250 DLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             cCccCeecccCCh-HHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            99999998 5654 7999999999999999999 466 57889999999999997 45543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.2e-18  Score=135.07  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=126.7

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCc-cChhHHhhccccccEEEccCCCCCccChh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINS-ITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      .+.++.++++++.++.+.+   +             ++++|+|++|.|+. +.+..|.++. +|++|++++|++..++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp---~-------------~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~~~   72 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP---L-------------HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC---T-------------TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTT
T ss_pred             CCEEEEeCCCcCccCCCCC---C-------------CCCEEEeCCCCCcccccccccCCCc-eEeeeecccccccccccc
Confidence            3578889999998854322   2             68899999999976 6677889999 999999999999999999


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc------cccc
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE------LSLK  252 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~------~~L~  252 (269)
                      .|..+++|+.|++++|+++.+++++|.++++|++|+|++|+|+.+++ +|..+++|+++++++|.+....      ..++
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~  152 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR  152 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred             ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhh
Confidence            99999999999999999999999999999999999999999998754 6889999999999999887532      3456


Q ss_pred             eeecCCCCCCC-CCCC
Q psy10547        253 NLNLKNTKLKS-VTPY  267 (269)
Q Consensus       253 ~L~l~~n~l~~-~p~~  267 (269)
                      .+.+..|.++. .|..
T Consensus       153 ~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_         153 KKSLNGGAARCGAPSK  168 (192)
T ss_dssp             HHCCSGGGCBBCSSTT
T ss_pred             hhcccCCCeEeCCChh
Confidence            66777777663 4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.3e-17  Score=130.86  Aligned_cols=158  Identities=29%  Similarity=0.402  Sum_probs=121.2

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      .++.++++++.+..++. +-...+|++|++++|+++++.+  +..++             +|++|++++|.++.+.  .+
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~--~~~l~-------------~L~~L~l~~n~i~~l~--~l  108 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLK-------------NLGWLFLDENKVKDLS--SL  108 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------------TCCEEECCSSCCCCGG--GG
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc--cccCc-------------cccccccccccccccc--cc
Confidence            46888888888887753 2223348889999998887653  56677             7888888888888763  47


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCce
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN  236 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~  236 (269)
                      ..++ +|+.|++++|.+..+.  .+..++.++.+++++|.++...  .+..+++|+.+++++|+++.+++ +.++++|+.
T Consensus       109 ~~l~-~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~  182 (210)
T d1h6ta2         109 KDLK-KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN  182 (210)
T ss_dssp             TTCT-TCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             cccc-cccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-ccCCCCCCE
Confidence            7777 8888998888887764  3777888888888888887665  36678888899998888887764 788888888


Q ss_pred             eeeccCcccccc-----cccceeecCC
Q psy10547        237 LTLYKNSFRGLE-----LSLKNLNLKN  258 (269)
Q Consensus       237 l~l~~n~~~~l~-----~~L~~L~l~~  258 (269)
                      |++++|.+++++     ++|++|++++
T Consensus       183 L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCCChhhcCCCCCCEEEccC
Confidence            888888877755     4778888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.4e-17  Score=127.37  Aligned_cols=147  Identities=24%  Similarity=0.391  Sum_probs=90.1

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      ++.|+++++.+.++.. +-...+|++|++++|+++++.+  +.+++             +|++|++++|.+..+.  .+.
T Consensus        42 l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~--l~~l~-------------~L~~L~l~~n~~~~~~--~l~  103 (199)
T d2omxa2          42 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLT-------------KLVDILMNNNQIADIT--PLA  103 (199)
T ss_dssp             CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------------TCCEEECCSSCCCCCG--GGT
T ss_pred             CCEEECCCCCCCCccc-cccCCCcCcCccccccccCccc--ccCCc-------------cccccccccccccccc--ccc
Confidence            5667777776666532 1112236777777776666543  55666             5666677766666553  355


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCcee
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL  237 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l  237 (269)
                      ++. +|++|+++++....+.  .+..+++|+.|++++|.+..++  .+..+++|+.|++.+|.++.++ .++++++|+.|
T Consensus       104 ~l~-~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         104 NLT-NLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERL  177 (199)
T ss_dssp             TCT-TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             ccc-cccccccccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc-cccCCCCCCEE
Confidence            666 6777777766666553  2556666777777777666554  3556666777777777666654 35666666666


Q ss_pred             eeccCcccccc
Q psy10547        238 TLYKNSFRGLE  248 (269)
Q Consensus       238 ~l~~n~~~~l~  248 (269)
                      ++++|++++++
T Consensus       178 ~ls~N~i~~i~  188 (199)
T d2omxa2         178 DISSNKVSDIS  188 (199)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ECCCCCCCCCc
Confidence            66666665553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.4e-17  Score=126.76  Aligned_cols=143  Identities=26%  Similarity=0.432  Sum_probs=125.9

Q ss_pred             cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      .+++|+++++.++.+.  .++.++             +|++|++++|.++++.+  +.+++ +|++|++++|.+..+++ 
T Consensus        41 ~l~~L~l~~~~i~~l~--~l~~l~-------------nL~~L~Ls~N~l~~~~~--l~~l~-~L~~L~l~~n~~~~~~~-  101 (199)
T d2omxa2          41 QVTTLQADRLGIKSID--GVEYLN-------------NLTQINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP-  101 (199)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCT-------------TCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCGG-
T ss_pred             CCCEEECCCCCCCCcc--ccccCC-------------CcCcCccccccccCccc--ccCCc-ccccccccccccccccc-
Confidence            3899999999998764  366677             88999999999998854  88898 99999999999998864 


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----ccccee
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNL  254 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L  254 (269)
                       +..++.|+.|++++|.+..++  .+..+++|+.|++++|++..++ .+..+++++.+++.+|.+++++     ++|++|
T Consensus       102 -l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L  177 (199)
T d2omxa2         102 -LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL  177 (199)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             -ccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCccccCCCCCCEE
Confidence             889999999999999988775  3788999999999999998776 5889999999999999887764     589999


Q ss_pred             ecCCCCCCCCC
Q psy10547        255 NLKNTKLKSVT  265 (269)
Q Consensus       255 ~l~~n~l~~~p  265 (269)
                      ++++|++++++
T Consensus       178 ~ls~N~i~~i~  188 (199)
T d2omxa2         178 DISSNKVSDIS  188 (199)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ECCCCCCCCCc
Confidence            99999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.3e-17  Score=127.38  Aligned_cols=165  Identities=22%  Similarity=0.341  Sum_probs=88.6

Q ss_pred             cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547         77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF  156 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~  156 (269)
                      .++.|++.++.|.+++ +.-...+|++|++++|.++++.+  +..++             +++.+++++|.++.+.  .+
T Consensus        42 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~-------------~l~~l~~~~n~~~~i~--~l  103 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-------------KITELELSGNPLKNVS--AI  103 (227)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-------------SCCEEECCSCCCSCCG--GG
T ss_pred             CcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccc-------------cccccccccccccccc--cc
Confidence            3577777777777763 23223337777777777776543  56666             4555556655555442  34


Q ss_pred             hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCce
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN  236 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~  236 (269)
                      .+++ +|+.++++++....+.+  +...+.+..+.++++.+....+  +...++|+.|++++|.++..+. +.++++|+.
T Consensus       104 ~~l~-~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~  177 (227)
T d1h6ua2         104 AGLQ-SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT  177 (227)
T ss_dssp             TTCT-TCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             cccc-cccccccccccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccchh-hccccccee
Confidence            4555 56666665555544432  3444555555555554444332  3444555555555555544332 445555555


Q ss_pred             eeeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547        237 LTLYKNSFRGLE-----LSLKNLNLKNTKLKSVT  265 (269)
Q Consensus       237 l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p  265 (269)
                      |++++|.+++++     ++|++|++++|+|++++
T Consensus       178 L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         178 LKADDNKISDISPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             cccCCCccCCChhhcCCCCCCEEECcCCcCCCCc
Confidence            555555544432     35555555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.8e-16  Score=124.32  Aligned_cols=144  Identities=25%  Similarity=0.382  Sum_probs=125.4

Q ss_pred             cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      .+++|++++|.++.+.+  +..++             +|++|++++|.++++.+  +..++ +|++|++++|+++.++  
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l~-------------~L~~L~L~~n~i~~l~~--~~~l~-~L~~L~l~~n~i~~l~--  106 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYLP-------------NVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKDLS--  106 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-------------TCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCGG--
T ss_pred             CccEEECcCCCCCCchh--HhhCC-------------CCCEEeCCCccccCccc--cccCc-cccccccccccccccc--
Confidence            38999999999988753  66777             88999999999998754  67788 9999999999999886  


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----ccccee
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNL  254 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L  254 (269)
                      .+..+++|+.|++++|.+..++  .+..+++++.+++++|.++..+ .+..+++|+.+++++|++++++     ++|++|
T Consensus       107 ~l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L  183 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL  183 (210)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCCEE
Confidence            3888999999999999998875  4788999999999999998755 5778999999999999888764     589999


Q ss_pred             ecCCCCCCCCCC
Q psy10547        255 NLKNTKLKSVTP  266 (269)
Q Consensus       255 ~l~~n~l~~~p~  266 (269)
                      ++++|+|+.+|+
T Consensus       184 ~Ls~N~i~~l~~  195 (210)
T d1h6ta2         184 YLSKNHISDLRA  195 (210)
T ss_dssp             ECCSSCCCBCGG
T ss_pred             ECCCCCCCCChh
Confidence            999999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=133.68  Aligned_cols=173  Identities=26%  Similarity=0.380  Sum_probs=105.8

Q ss_pred             CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEcCCC
Q psy10547         76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQLSHC  146 (269)
Q Consensus        76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l~~n  146 (269)
                      ..++.++++++.+..+++.. ....+++|++++|.++.+.  .+..+++|+.++  .+.+.+       .+|+.++++++
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~-~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         197 TNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN  273 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGG-GCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccceeeccCCccCCCCccc-ccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCcccccccCCEeeccCc
Confidence            44566777777666654321 1223677777777766542  345555433322  111111       15666666666


Q ss_pred             CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547        147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN  226 (269)
Q Consensus       147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~  226 (269)
                      .++++.+  +..+. .++.+.++.|.+.++.  .+..+++++.|++++|+++++++  +..+++|+.|++++|+++.++ 
T Consensus       274 ~l~~~~~--~~~~~-~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~-  345 (384)
T d2omza2         274 QISNISP--LAGLT-ALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS-  345 (384)
T ss_dssp             CCCCCGG--GTTCT-TCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             ccCCCCc--ccccc-cccccccccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh-
Confidence            6665532  44555 6666666666666653  25666777777777777776653  666777777777777777665 


Q ss_pred             cccCcCCCceeeeccCcccccc-----cccceeecCCC
Q psy10547        227 SFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNT  259 (269)
Q Consensus       227 ~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n  259 (269)
                      .+.++++|++|++++|++++++     ++|+.|++++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            4677777777777777776654     46777777776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.8e-16  Score=131.49  Aligned_cols=157  Identities=24%  Similarity=0.388  Sum_probs=122.2

Q ss_pred             cccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEcCCCCCCccChhHHhhccccccEEEccC
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE  170 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~  170 (269)
                      .++.+++++|.++++.+  +...++|++++  .+.+..       .+++.+++++|.++++.+  +..++ +|++|++++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCS
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccc-cCCEeeccC
Confidence            48999999999998765  35566666443  222221       267888888888877643  66666 788888888


Q ss_pred             CCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc--
Q psy10547        171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE--  248 (269)
Q Consensus       171 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~--  248 (269)
                      ++++++++  +..++.++.+++.+|.++.+.  .+..+++++.|++++|.+++++ .+..+++|++|++++|.+++++  
T Consensus       273 ~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~~l  347 (384)
T d2omza2         273 NQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSSL  347 (384)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCGGG
T ss_pred             cccCCCCc--ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCChhH
Confidence            88877753  667778888888888887765  3678889999999999999876 4889999999999999888764  


Q ss_pred             ---cccceeecCCCCCCCCCC
Q psy10547        249 ---LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       249 ---~~L~~L~l~~n~l~~~p~  266 (269)
                         ++|++|++++|+|++++|
T Consensus       348 ~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         348 ANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             GGCTTCCEEECCSSCCCBCGG
T ss_pred             cCCCCCCEEECCCCcCCCChh
Confidence               589999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=119.82  Aligned_cols=161  Identities=23%  Similarity=0.333  Sum_probs=122.8

Q ss_pred             CCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCcc
Q psy10547         73 NTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI  151 (269)
Q Consensus        73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~  151 (269)
                      .....|+.+++++|.+..+.+  +... .++.+++++|.++.+.  .+.+++             +++.+.++++.....
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~-------------~L~~l~l~~~~~~~~  122 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQ-------------SIKTLDLTSTQITDV  122 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCT-------------TCCEEECTTSCCCCC
T ss_pred             hcCCCCcEeecCCceeecccc--ccccccccccccccccccccc--cccccc-------------ccccccccccccccc
Confidence            456678999999999988764  4444 4999999999988763  467777             677788888877665


Q ss_pred             ChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCc
Q psy10547        152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL  231 (269)
Q Consensus       152 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l  231 (269)
                      .  .+.... .++.+.++++.+....+  +...++|+.|++++|.+....+  +.++++|++|++++|+++.+++ +.++
T Consensus       123 ~--~~~~~~-~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~-l~~l  194 (227)
T d1h6ua2         123 T--PLAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASL  194 (227)
T ss_dssp             G--GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred             c--hhcccc-chhhhhchhhhhchhhh--hccccccccccccccccccchh--hcccccceecccCCCccCCChh-hcCC
Confidence            3  345556 78888888888776543  6677888888888888776653  7788888888888888887764 7788


Q ss_pred             CCCceeeeccCcccccc-----cccceeecCC
Q psy10547        232 ELNNNLTLYKNSFRGLE-----LSLKNLNLKN  258 (269)
Q Consensus       232 ~~L~~l~l~~n~~~~l~-----~~L~~L~l~~  258 (269)
                      ++|++|++++|++++++     ++|+.|++++
T Consensus       195 ~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            88888888888877654     4677777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=119.00  Aligned_cols=121  Identities=24%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET  180 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~  180 (269)
                      +++|++++|+|+.+. ..+..++             +|+.|++++|.|+.+.  .|..++ +|++|++++|+++.+++..
T Consensus        20 lr~L~L~~n~I~~i~-~~~~~l~-------------~L~~L~Ls~N~i~~l~--~~~~l~-~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          20 DRELDLRGYKIPVIE-NLGATLD-------------QFDAIDFSDNEIRKLD--GFPLLR-RLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             CEEEECTTSCCCSCC-CGGGGTT-------------CCSEEECCSSCCCEEC--CCCCCS-SCCEEECCSSCCCEECSCH
T ss_pred             CcEEECCCCCCCccC-ccccccc-------------cCCEEECCCCCCCccC--CcccCc-chhhhhcccccccCCCccc
Confidence            566666666666662 3344555             5666666666666652  355555 6666666666666666555


Q ss_pred             hcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccccccc----cccCcCCCceee
Q psy10547        181 LRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLT  238 (269)
Q Consensus       181 ~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~  238 (269)
                      +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++..|.    .+..+++|+.||
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5666666666666666665543 345566667777777776665543    244555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.5e-15  Score=108.68  Aligned_cols=82  Identities=29%  Similarity=0.469  Sum_probs=37.7

Q ss_pred             cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEE
Q psy10547        137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLK  215 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~  215 (269)
                      ++++|++++|.++.+++ .|..++ +|++|++++|.++.++  .+..+++|++|++++|+++.++. ..+..+++|+.|+
T Consensus        21 ~L~~L~ls~N~l~~lp~-~~~~l~-~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          21 LVTHLDLSHNRLRALPP-ALAALR-CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             TCCEEECCSSCCCCCCG-GGGGCT-TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCccCcchh-hhhhhh-cccccccccccccccC--ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            44445555555544422 344444 4555555555544443  14444455555555554444432 2334444445555


Q ss_pred             cCCCccc
Q psy10547        216 LSDNNLT  222 (269)
Q Consensus       216 L~~n~l~  222 (269)
                      +++|.++
T Consensus        97 l~~N~i~  103 (124)
T d1dcea3          97 LQGNSLC  103 (124)
T ss_dssp             CTTSGGG
T ss_pred             CCCCcCC
Confidence            5544444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.3e-15  Score=120.15  Aligned_cols=169  Identities=16%  Similarity=0.229  Sum_probs=130.5

Q ss_pred             ccCCCCcccEEEecCCCcc-ccCcCCCCCCc-ccEEEec-CCCCcccCcccccCCccccccc--ccccccc---------
Q psy10547         71 HVNTKVPLDLLYINNSAIR-NINENTFNGIF-IKNLQLS-HCRINSITPNAFRHLDAIRNIN--ENTFNGI---------  136 (269)
Q Consensus        71 ~~~~~~~l~~l~l~~~~i~-~l~~~~~~~~~-L~~L~l~-~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~---------  136 (269)
                      .+.+...|+++++++|.+. .++...|.... ++++.+. .|.+..+.+..|.++++|+.+.  .+.+...         
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            4556788999999999875 46788887665 8888876 4689999899999999999664  2222211         


Q ss_pred             -cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547        137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       137 -~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~  215 (269)
                       .+..+...++.+..+.+..|.++...++.+++++|+++.+....|.....++.+++.+|++++++++.|.++++|+.|+
T Consensus       128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             cccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence             4555566788899988888877755799999999999999887665543344456788899999988899999999999


Q ss_pred             cCCCccccccc-cccCcCCCceeee
Q psy10547        216 LSDNNLTLYKN-SFRGLELNNNLTL  239 (269)
Q Consensus       216 L~~n~l~~~p~-~~~~l~~L~~l~l  239 (269)
                      +++|+++.+|. .+.+++.|+.+++
T Consensus       208 Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         208 ISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCCCcCCccCHHHHcCCcccccCcC
Confidence            99999998875 4666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.4e-15  Score=108.93  Aligned_cols=104  Identities=25%  Similarity=0.332  Sum_probs=90.4

Q ss_pred             cEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCC
Q psy10547        139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD  218 (269)
Q Consensus       139 ~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~  218 (269)
                      ++|++++|.++.+.  .+..+. +|++|++++|+++++++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~-~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLL-LVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGT-TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCc--ccccCC-CCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCC
Confidence            57999999999885  378888 99999999999999875 5888999999999999999986  388999999999999


Q ss_pred             Ccccccc--ccccCcCCCceeeeccCcccccc
Q psy10547        219 NNLTLYK--NSFRGLELNNNLTLYKNSFRGLE  248 (269)
Q Consensus       219 n~l~~~p--~~~~~l~~L~~l~l~~n~~~~l~  248 (269)
                      |+++.++  ..+..+++|+.+++++|++++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9999776  36788888888999888887643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=114.56  Aligned_cols=125  Identities=22%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             CCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547         74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT  152 (269)
Q Consensus        74 ~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~  152 (269)
                      ....++.|++++|.|..++ +.+... .|+.|++++|+|+.+.  .|..++             +|++|++++|.++.+.
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~-------------~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLR-------------RLKTLLVNNNRICRIG   79 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCS-------------SCCEEECCSSCCCEEC
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCc-------------chhhhhcccccccCCC
Confidence            5667899999999999996 444444 4999999999999883  477788             8899999999999998


Q ss_pred             hhHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEE
Q psy10547        153 PNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLK  215 (269)
Q Consensus       153 ~~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~  215 (269)
                      +..+..++ +|++|++++|+++.+.. ..+..+++|++|++++|.++..+.   ..+..+++|+.|+
T Consensus        80 ~~~~~~l~-~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          80 EGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCHHHHCT-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccc-ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888888 99999999999998764 568899999999999999988763   2467789999887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=3.1e-14  Score=118.95  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             CCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCC
Q psy10547        209 NNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       209 ~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~  266 (269)
                      ++|++|++++|+++.+|..   +++|+.|++++|+++.+|   .+|++|++++|+|+.+|.
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccccCCCCEEECcCCcCCCCCc
Confidence            5789999999999988854   567889999999888875   689999999999998874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=111.26  Aligned_cols=114  Identities=20%  Similarity=0.318  Sum_probs=62.0

Q ss_pred             cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCC-CccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547         37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNS-AIRNINENTFNGIF-IKNLQLSHCRINSI  114 (269)
Q Consensus        37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~-~i~~l~~~~~~~~~-L~~L~l~~n~l~~~  114 (269)
                      ||..|.|...    .++.|. ..++.+.+..    +.+..+++.|++.++ .+..++.+.|.++. |+.|++++|+|+.+
T Consensus         1 CP~~C~c~~~----~~l~c~-~~~~~~~p~~----l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i   71 (156)
T d2ifga3           1 CPDACCPHGS----SGLRCT-RDGALDSLHH----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV   71 (156)
T ss_dssp             CCSSSCCSSS----SCEECC-SSCCCTTTTT----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred             CcCCCCcCCC----CeEEec-CCCCccCccc----ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc
Confidence            5677999743    458887 3344433333    333445566666444 35555555555543 55555555555555


Q ss_pred             CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCC
Q psy10547        115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus       115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~  174 (269)
                      .+.+|..++             +|++|+|++|.++.+++..|..+  ++++|++++|++.
T Consensus        72 ~~~~f~~l~-------------~L~~L~Ls~N~l~~l~~~~~~~~--~l~~L~L~~Np~~  116 (156)
T d2ifga3          72 APDAFHFTP-------------RLSRLNLSFNALESLSWKTVQGL--SLQELVLSGNPLH  116 (156)
T ss_dssp             CTTGGGSCS-------------CCCEEECCSSCCSCCCSTTTCSC--CCCEEECCSSCCC
T ss_pred             ccccccccc-------------cccceeccCCCCcccChhhhccc--cccccccCCCccc
Confidence            555555555             45555555555555555444332  3555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=102.24  Aligned_cols=106  Identities=18%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC-CCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      .+.++.+++.+..+ |..+.+++             +++.|++++| .++.+.+.+|.+++ +|+.|++++|+++.++++
T Consensus        10 ~~~l~c~~~~~~~~-p~~l~~l~-------------~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          10 SSGLRCTRDGALDS-LHHLPGAE-------------NLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             SSCEECCSSCCCTT-TTTSCSCS-------------CCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTT
T ss_pred             CCeEEecCCCCccC-cccccCcc-------------ccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCcccc
Confidence            45566676666655 34455555             6777777655 47777777777777 788888888888888777


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      +|..+++|++|++++|+++.++.+.+..+ +|+.|+|++|.+.
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            78778888888888888887777666544 5778888877774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=7.9e-15  Score=113.62  Aligned_cols=105  Identities=27%  Similarity=0.345  Sum_probs=62.0

Q ss_pred             cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547        100 FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE  179 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~  179 (269)
                      +|++|++++|+|+.+.  .+..++             +|+.|++++|.++.+++ .+.... +|++|++++|+++.++  
T Consensus        49 ~L~~L~Ls~n~I~~i~--~l~~l~-------------~L~~L~Ls~N~i~~i~~-~~~~~~-~L~~L~l~~N~i~~l~--  109 (198)
T d1m9la_          49 ACKHLALSTNNIEKIS--SLSGME-------------NLRILSLGRNLIKKIEN-LDAVAD-TLEELWISYNQIASLS--  109 (198)
T ss_dssp             TCCEEECSEEEESCCC--CHHHHT-------------TCCEEECCEEEECSCSS-HHHHHH-HCCEEECSEEECCCHH--
T ss_pred             ccceeECcccCCCCcc--cccCCc-------------cccChhhcccccccccc-cccccc-cccccccccccccccc--
Confidence            3666666666666552  255555             56666666666665532 233333 5666666666666653  


Q ss_pred             hhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCcccc
Q psy10547        180 TLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTL  223 (269)
Q Consensus       180 ~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~  223 (269)
                      .+..+++|+.|++++|+++.++. ..+..+++|+.|++++|.+..
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            25556666666666666665542 245566666666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2.2e-14  Score=111.01  Aligned_cols=127  Identities=23%  Similarity=0.294  Sum_probs=100.2

Q ss_pred             ccEEEecCCC--CcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh
Q psy10547        101 IKNLQLSHCR--INSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV  178 (269)
Q Consensus       101 L~~L~l~~n~--l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~  178 (269)
                      ++.+++++.-  +..+ +..+..++             +|++|++++|.|+.+.  .+..+. +|++|++++|.++.++.
T Consensus        25 ~~~~~l~~~~~~i~~l-~~sl~~L~-------------~L~~L~Ls~n~I~~i~--~l~~l~-~L~~L~Ls~N~i~~i~~   87 (198)
T d1m9la_          25 AEKVELHGMIPPIEKM-DATLSTLK-------------ACKHLALSTNNIEKIS--SLSGME-NLRILSLGRNLIKKIEN   87 (198)
T ss_dssp             CSCEECCBCCTTCCCC-HHHHHHTT-------------TCCEEECSEEEESCCC--CHHHHT-TCCEEECCEEEECSCSS
T ss_pred             cceeeeecccCchhhh-hhHHhccc-------------ccceeECcccCCCCcc--cccCCc-cccChhhcccccccccc
Confidence            5667776542  3222 45566777             7889999999999874  488888 99999999999988863


Q ss_pred             hhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc--ccccCcCCCceeeeccCccccc
Q psy10547        179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK--NSFRGLELNNNLTLYKNSFRGL  247 (269)
Q Consensus       179 ~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~l~l~~n~~~~l  247 (269)
                       .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  ..+..+++|+.|++++|++...
T Consensus        88 -~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          88 -LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -HHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -cccccccccccccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence             3445568999999999998875  3778889999999999998776  3688899999999999988653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.28  E-value=1.4e-10  Score=96.31  Aligned_cols=160  Identities=18%  Similarity=0.341  Sum_probs=99.0

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR  157 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  157 (269)
                      +++|++++|.|..+|...   .+|+.|++++|+++.+..     ++.            .|++|++++|.++.++.  +.
T Consensus        60 L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----lp~------------~L~~L~L~~n~l~~lp~--~~  117 (353)
T d1jl5a_          60 LESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPP------------LLEYLGVSNNQLEKLPE--LQ  117 (353)
T ss_dssp             CSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCT------------TCCEEECCSSCCSSCCC--CT
T ss_pred             CCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-----hcc------------ccccccccccccccccc--hh
Confidence            567777777777666432   236777777776665431     111            57778888887777643  45


Q ss_pred             hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-----------
Q psy10547        158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----------  226 (269)
Q Consensus       158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-----------  226 (269)
                      .+. +|++|+++++.+...+.    ....+..+.+.++......  .+..++.++.+++.+|.+..++.           
T Consensus       118 ~l~-~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~--~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~  190 (353)
T d1jl5a_         118 NSS-FLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG  190 (353)
T ss_dssp             TCT-TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             hhc-cceeecccccccccccc----ccccccchhhccccccccc--cccccccceecccccccccccccccccccccccc
Confidence            566 78888888777766553    2355666776665544433  35667788888888877654331           


Q ss_pred             --------cccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCC
Q psy10547        227 --------SFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTP  266 (269)
Q Consensus       227 --------~~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~  266 (269)
                              .+..++.++.+++++|....++   .++..+++.++++...+.
T Consensus       191 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~  241 (353)
T d1jl5a_         191 NNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE  241 (353)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    2334556667777776655543   456667777776665443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.5e-11  Score=98.77  Aligned_cols=187  Identities=20%  Similarity=0.258  Sum_probs=111.4

Q ss_pred             cccEEEecCCCccccC-cCCCCCC-cccEEEecCCCCcccCcccccCCccccccccccccc-------------ccccEE
Q psy10547         77 PLDLLYINNSAIRNIN-ENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNG-------------IFIKNL  141 (269)
Q Consensus        77 ~l~~l~l~~~~i~~l~-~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~-------------~~L~~L  141 (269)
                      .++.|+++++.+..-. ...+... +|++|+++++.+.......+..+++|++|+.....+             ++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            3455555555443211 1122222 255555555555544444455555555444222111             178889


Q ss_pred             EcCCC-CCCccC-hhHHhhccccccEEEccCCC--CCcc-ChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEE
Q psy10547        142 QLSHC-RINSIT-PNAFRHLEFTLKHLNLQEND--LEQV-PVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLK  215 (269)
Q Consensus       142 ~l~~n-~i~~~~-~~~~~~l~~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~  215 (269)
                      +++++ .+++.. ...+....++|+.|+++++.  ++.. .......+++|+.|++++|. ++......+..+++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            99885 454322 22344443379999998753  4322 12334568899999999864 5544444677888999999


Q ss_pred             cCCC-cccc-ccccccCcCCCceeeeccCcccc-----cccccceeecCCCCCCCC
Q psy10547        216 LSDN-NLTL-YKNSFRGLELNNNLTLYKNSFRG-----LELSLKNLNLKNTKLKSV  264 (269)
Q Consensus       216 L~~n-~l~~-~p~~~~~l~~L~~l~l~~n~~~~-----l~~~L~~L~l~~n~l~~~  264 (269)
                      +++| .++. ....+..+++|+.|+++++ +.+     +...+..|++..++++.+
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~  261 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTI  261 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCC
Confidence            9986 6763 4456788899999999887 332     224566777888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.14  E-value=1.5e-11  Score=102.81  Aligned_cols=127  Identities=18%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             cccEEEcCCCCCCccChhH----HhhccccccEEEccCCCCCcc-----ChhhhcCCCCCCEEeccCCCCCCCC----CC
Q psy10547        137 FIKNLQLSHCRINSITPNA----FRHLEFTLKHLNLQENDLEQV-----PVETLRHLKNLTLIDLSKNKIGKIP----DD  203 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~----~~~l~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~i~~i~----~~  203 (269)
                      .++.+++++|.++......    +.... ++++|++++|.+..-     ....+...++|+.|++++|.++...    ..
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhh-hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            6788999999887644333    44556 899999999998742     2234667889999999999875421    13


Q ss_pred             cccCCCCCCEEEcCCCcccc-----ccccccC--cCCCceeeeccCccccc------------ccccceeecCCCCCCCC
Q psy10547        204 SFSTLNNLVTLKLSDNNLTL-----YKNSFRG--LELNNNLTLYKNSFRGL------------ELSLKNLNLKNTKLKSV  264 (269)
Q Consensus       204 ~~~~l~~L~~L~L~~n~l~~-----~p~~~~~--l~~L~~l~l~~n~~~~l------------~~~L~~L~l~~n~l~~~  264 (269)
                      .+...++|++|++++|.++.     +...+..  ...|++|++++|.+..-            .++|++|++++|++..-
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            56678899999999999973     3334443  35799999999988641            14799999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.14  E-value=4.6e-11  Score=99.72  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=92.8

Q ss_pred             cccEEEcCCCCCCccChhHH-------------hhccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCC
Q psy10547        137 FIKNLQLSHCRINSITPNAF-------------RHLEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGK  199 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~~~-------------~~l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~  199 (269)
                      +|+.|++++|.+.......+             .... .++.+.+++|.+..-.    ...+...+.|+.|++++|.++.
T Consensus       122 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~-~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  200 (344)
T d2ca6a1         122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  200 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             cchheecccccccccccccccccccccccccccccCc-ccceeecccccccccccccccchhhhhhhhcccccccccccc
Confidence            68889999888754322221             1233 7889999998877432    2345667899999999998864


Q ss_pred             C-----CCCcccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCcccccc-------------cccceeec
Q psy10547        200 I-----PDDSFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNL  256 (269)
Q Consensus       200 i-----~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l  256 (269)
                      .     ....+...++|+.|++++|.++.     +...+..++.|+.|++++|.+.+..             ..+++|++
T Consensus       201 ~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~l  280 (344)
T d2ca6a1         201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  280 (344)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEEC
Confidence            2     12346677899999999999862     4567788999999999999887521             46999999


Q ss_pred             CCCCCCC
Q psy10547        257 KNTKLKS  263 (269)
Q Consensus       257 ~~n~l~~  263 (269)
                      ++|+|+.
T Consensus       281 s~N~i~~  287 (344)
T d2ca6a1         281 QYNEIEL  287 (344)
T ss_dssp             CSSCCBH
T ss_pred             CCCcCCh
Confidence            9999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-10  Score=93.65  Aligned_cols=180  Identities=20%  Similarity=0.228  Sum_probs=112.6

Q ss_pred             ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccC-cccccCCcccccccccccc-----------cccccEEEcCC
Q psy10547         78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSIT-PNAFRHLDAIRNINENTFN-----------GIFIKNLQLSH  145 (269)
Q Consensus        78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~~~~~~-----------~~~L~~L~l~~  145 (269)
                      ...+.+....+.......+....|++|+++++.+.... ...+..+++|++|+.....           ..+|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            35667776666655566666777999999999887543 3457788877766533221           12677888877


Q ss_pred             C-CCCccChhH-HhhccccccEEEccCCC-CCc--cChhhhcCCCCCCEEeccCCC--CCCCC-CCcccCCCCCCEEEcC
Q psy10547        146 C-RINSITPNA-FRHLEFTLKHLNLQEND-LEQ--VPVETLRHLKNLTLIDLSKNK--IGKIP-DDSFSTLNNLVTLKLS  217 (269)
Q Consensus       146 n-~i~~~~~~~-~~~l~~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~l~~n~--i~~i~-~~~~~~l~~L~~L~L~  217 (269)
                      + .+++..-.. ...++ +|++|+++++. ++.  +........++|+.|+++++.  ++... .....++++|++|+++
T Consensus       105 c~~itd~~l~~l~~~~~-~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         105 CSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             CBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             cccccccccchhhHHHH-hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            4 555432222 23455 78888887753 432  111112234678888887642  22111 1123456889999998


Q ss_pred             CC-ccc-cccccccCcCCCceeeeccC-cccc--------cccccceeecCCC
Q psy10547        218 DN-NLT-LYKNSFRGLELNNNLTLYKN-SFRG--------LELSLKNLNLKNT  259 (269)
Q Consensus       218 ~n-~l~-~~p~~~~~l~~L~~l~l~~n-~~~~--------l~~~L~~L~l~~n  259 (269)
                      +| .++ .....+..+++|++|+++++ .+++        . ++|+.|+++++
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~-~~L~~L~l~~~  235 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI  235 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC-CCCCEEeeeCC
Confidence            86 466 35567788889999999884 3433        3 38889998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.5e-09  Score=89.84  Aligned_cols=173  Identities=15%  Similarity=0.157  Sum_probs=107.2

Q ss_pred             CCcccEEEecCCCcccc-----CcCCCC-CCcccEEEecCCCCcccCcc----cccCCcccccccccccccccccEEEcC
Q psy10547         75 KVPLDLLYINNSAIRNI-----NENTFN-GIFIKNLQLSHCRINSITPN----AFRHLDAIRNINENTFNGIFIKNLQLS  144 (269)
Q Consensus        75 ~~~l~~l~l~~~~i~~l-----~~~~~~-~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~l~~~~~~~~~L~~L~l~  144 (269)
                      ...++.+++.++.+...     ....+. ...++.+++++|.+......    .+...+             .+..++++
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~-------------~l~~l~l~  291 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-------------SLKELSLA  291 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-------------TCCEEECT
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccc-------------cccccccc
Confidence            34456666666654321     111122 22367777777776543221    222333             67778888


Q ss_pred             CCCCCccChhHHh-----hccccccEEEccCCCCCccChh----hhcCCCCCCEEeccCCCCCCC-----CCCcc-cCCC
Q psy10547        145 HCRINSITPNAFR-----HLEFTLKHLNLQENDLEQVPVE----TLRHLKNLTLIDLSKNKIGKI-----PDDSF-STLN  209 (269)
Q Consensus       145 ~n~i~~~~~~~~~-----~l~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~i~~i-----~~~~~-~~l~  209 (269)
                      +|.++......+.     ... .++.++++++.++.....    .+....+|+.|++++|.++..     .. .+ ...+
T Consensus       292 ~n~i~~~~~~~l~~~l~~~~~-~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~-~l~~~~~  369 (460)
T d1z7xw1         292 GNELGDEGARLLCETLLEPGC-QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ-GLGQPGS  369 (460)
T ss_dssp             TCCCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH-HHTSTTC
T ss_pred             cccccccccchhhcccccccc-ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh-hhhcccC
Confidence            8887654333332     123 688888888887754432    334566888889988887532     22 22 2356


Q ss_pred             CCCEEEcCCCcccc-----ccccccCcCCCceeeeccCccccc-----------c-cccceeecCCCCCC
Q psy10547        210 NLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSFRGL-----------E-LSLKNLNLKNTKLK  262 (269)
Q Consensus       210 ~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~l-----------~-~~L~~L~l~~n~l~  262 (269)
                      .|++|+|++|.|+.     +++.+..+++|++|++++|.|++-           + ..|+.|++++|.+.
T Consensus       370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            78889998888863     455677778888889988887641           1 36888888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.3e-08  Score=84.31  Aligned_cols=109  Identities=24%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             cccEEEecCCCCcccC-cccccCCcccccccccccccccccEEEcCCCCCCccCh----hHHhhccccccEEEccCCCCC
Q psy10547        100 FIKNLQLSHCRINSIT-PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus       100 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~~L~~L~l~~n~l~  174 (269)
                      +|++||+++++++... ...+..++             ++++|+|++|.++....    .++...+ +|++|++++|+++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~-------------~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQ-------------QCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHT-------------TCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCC-------------CCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCC
Confidence            4788888888888753 22344455             67888888888775432    3445566 7888888888876


Q ss_pred             ccCh----hhhc-CCCCCCEEeccCCCCCCCC----CCcccCCCCCCEEEcCCCccc
Q psy10547        175 QVPV----ETLR-HLKNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       175 ~~~~----~~~~-~l~~L~~L~l~~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      ....    ..+. ...+|+.|++++|.++...    ...+...++|+.|++++|.++
T Consensus        69 ~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          69 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            4221    1222 2346888888888876542    234566778888888888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.2e-09  Score=76.14  Aligned_cols=65  Identities=25%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             hhccccccEEEccCCCCCccCh--hhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547        157 RHLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT  222 (269)
Q Consensus       157 ~~l~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  222 (269)
                      ..++ +|++|++++|+++.+.+  ..+..+++|+.|++++|.|+.+++-.+....+|+.|++++|.++
T Consensus        62 ~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444 55555555555555432  33444555555666666555554422223334555666665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=8.7e-08  Score=70.68  Aligned_cols=63  Identities=22%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             cccEEEcCCCCCCccCh--hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547        137 FIKNLQLSHCRINSITP--NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI  200 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~--~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i  200 (269)
                      +|++|++++|.|+.+.+  ..+..++ +|+.|++++|.++.+.+-.+-....|+.+++++|.+...
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            56666666666666542  3445555 666666666666666553333344566666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=7e-06  Score=60.40  Aligned_cols=107  Identities=11%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             cccEEEcCCC-CCCccCh----hHHhhccccccEEEccCCCCCc----cChhhhcCCCCCCEEeccCCCCCCCC----CC
Q psy10547        137 FIKNLQLSHC-RINSITP----NAFRHLEFTLKHLNLQENDLEQ----VPVETLRHLKNLTLIDLSKNKIGKIP----DD  203 (269)
Q Consensus       137 ~L~~L~l~~n-~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~i~----~~  203 (269)
                      .|+.|+|+++ .++....    .++.... +|++|++++|.+..    .....+...+.|+.|++++|.++...    ..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCC-ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            6888888764 4554322    2333344 68888888887763    22244556677888888888775422    12


Q ss_pred             cccCCCCCCEEEcCCCcccc--------ccccccCcCCCceeeeccCcc
Q psy10547        204 SFSTLNNLVTLKLSDNNLTL--------YKNSFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       204 ~~~~l~~L~~L~L~~n~l~~--------~p~~~~~l~~L~~l~l~~n~~  244 (269)
                      ++...++|++|++++|.+..        +...+...++|+.++++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            45555678888887775442        334555566777777665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=2.8e-05  Score=57.01  Aligned_cols=84  Identities=12%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             cccEEEcCCCCCCccCh----hHHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCCC------
Q psy10547        137 FIKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIPD------  202 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~~------  202 (269)
                      .++.|++++|.+.....    ..+...+ +|++|++++|.+..-    ....+...++|+.|++++|.+..+..      
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~-~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcc-cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            57777787777764322    2333344 678888888777642    12345566777888887776655432      


Q ss_pred             -CcccCCCCCCEEEcCCCcc
Q psy10547        203 -DSFSTLNNLVTLKLSDNNL  221 (269)
Q Consensus       203 -~~~~~l~~L~~L~L~~n~l  221 (269)
                       ..+...++|+.|+++.+..
T Consensus       124 ~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         124 MMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCccEeeCcCCCc
Confidence             1233346677777766544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00013  Score=53.10  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             cccEEEcCC-CCCCccCh----hHHhhccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCCCC----CC
Q psy10547        137 FIKNLQLSH-CRINSITP----NAFRHLEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGKIP----DD  203 (269)
Q Consensus       137 ~L~~L~l~~-n~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~i~----~~  203 (269)
                      .|++|++++ +.++....    .++...+ .|++|++++|.++.-.    ...+...+.++.+++++|.++...    ..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            677888876 45654332    2233445 7888888888776421    234556677888888887764321    12


Q ss_pred             cccCCCCCCEEEcC--CCccc-----cccccccCcCCCceeeeccCcc
Q psy10547        204 SFSTLNNLVTLKLS--DNNLT-----LYKNSFRGLELNNNLTLYKNSF  244 (269)
Q Consensus       204 ~~~~l~~L~~L~L~--~n~l~-----~~p~~~~~l~~L~~l~l~~n~~  244 (269)
                      .+...++|+.++|+  +|.+.     .+...+...+.|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            44556677765554  45564     2445566677777777766544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00025  Score=51.52  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=17.5

Q ss_pred             cccEEEcCCCCCCccChh----HHhhccccccEEEccCCCCC
Q psy10547        137 FIKNLQLSHCRINSITPN----AFRHLEFTLKHLNLQENDLE  174 (269)
Q Consensus       137 ~L~~L~l~~n~i~~~~~~----~~~~l~~~L~~L~l~~n~l~  174 (269)
                      ++++|++++|.++.....    .+.... +++.+++++|.+.
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~l~~l~l~~~~~~   87 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFIS   87 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCC
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcc-cchhhhhcccccc
Confidence            455555555555443222    222233 5555555555544