Psyllid ID: psy10577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTTSSSSSTSTGPVASTSTN
ccccccEEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEEEEEEEEEcccEEEccccccccEEEEccccccccccccEEEEEEEcccccEEEEEcccccEEEccEEccccccEEcccccEEEEccEEEEEEEcHHHHHHHHcccccccccccccccccccccccc
ccccccEEEEcccccEEEEcccEEcccccccccccHHHHHHHHHHHHHHHHHEEEEHccccccccHcccccEEEEEccEEEEEEEEEEEEEEccccccEEEEEcccccccccEEHcEEEEEEcccccEEEEEcccccEEEccEEcccccEEEcccccEEEEccEEEEEEEcHHHHHHHHHHcccccccccccccccccccccc
mrnngdffianegkrpiyvdgrpiiasnkyklnhNSIIEKELKKVEEEMKNWAVIVDHvtgsntpeldkQTYAVLRGRAVRYLMKFrdvtlgrstadhsvdidlslegpawkvSRRQACIRMRnngdffianegkrpiyvdgrpiiasnkyklnhNSIIEIAGLHFTFLVNQSLIQslradpkgttssssststgpvaststn
mrnngdffianegkrpiyvDGRPIIasnkyklnhnSIIEKELKKVEEEMKNWAVIVDhvtgsntpeldkqtYAVLRGRAVRYLMKFrdvtlgrstadhsvdidlslegpawkvsrRQACIRMrnngdffianegkrpiyVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRadpkgttssssststgpvaststn
MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIekelkkveeemkNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGttssssststgpvaststN
******FFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQ***************************
**NNGDFFIANEGKRPIYVDGRPII**********************************************YAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQS******************************
MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSL*************************
**NNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADP*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTTSSSSSTSTGPVASTSTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q96EZ8462 Microspherule protein 1 O yes N/A 0.832 0.365 0.488 1e-52
Q99L90462 Microspherule protein 1 O yes N/A 0.832 0.365 0.488 2e-52
>sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 132/180 (73%), Gaps = 11/180 (6%)

Query: 18  YVDGRPIIASNKYKLNHNSIIE-----------KELKKVEEEMKNWAVIVDHVTGSNTPE 66
           + D   +I  +K K   + ++E           +E++++E+E+  W V+VD +TG ++P+
Sbjct: 281 FSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPD 340

Query: 67  LDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG 126
            D QT AVLRGR VRYLM+ R++TLGR+T D+ +D+DLSLEGPAWK+SR+Q  I+++NNG
Sbjct: 341 FDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNG 400

Query: 127 DFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTT 186
           DFFIANEG+RPIY+DGRP++  +K++L++NS++EIA L F FL+NQ LI  +RA+    T
Sbjct: 401 DFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKIT 460
Modulates the transcription repressor activity of DAXX by recruiting it to the nucleolus. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. May also be an inhibitor of TERT telomerase activity.
Homo sapiens (taxid: 9606)
>sp|Q99L90|MCRS1_MOUSE Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
307186249 471 Microspherule protein 1 [Camponotus flor 0.704 0.303 0.657 1e-53
332029635 471 Microspherule protein 1 [Acromyrmex echi 0.704 0.303 0.657 6e-53
56090160 472 microspherule protein 1 [Danio rerio] gi 0.807 0.347 0.508 2e-52
322801274 471 hypothetical protein SINV_06956 [Solenop 0.704 0.303 0.643 2e-52
33416935 472 Microspherule protein 1 [Danio rerio] 0.807 0.347 0.502 4e-52
328790508 472 PREDICTED: microspherule protein 1-like 0.704 0.302 0.636 4e-52
340728547 438 PREDICTED: microspherule protein 1-like 0.704 0.326 0.636 5e-52
350423002 472 PREDICTED: microspherule protein 1-like 0.704 0.302 0.636 6e-52
10445201 530 target of Jun 3 [Coturnix coturnix] 0.807 0.309 0.502 1e-51
161089085 530 target of Jun 3 [Coturnix coturnix] 0.807 0.309 0.502 2e-51
>gi|307186249|gb|EFN71912.1| Microspherule protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 120/143 (83%)

Query: 39  EKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADH 98
           ++E+K +E E+  W V+VD VTG+N PE D QT A+LRGR VRYLM+ R++++GRST DH
Sbjct: 321 KREIKVLENELGRWQVLVDSVTGANPPEFDNQTLAILRGRLVRYLMRSREISVGRSTKDH 380

Query: 99  SVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSI 158
           +VD+DLSLEGPAWKVSRRQ  IR+RNNGDFF+++EGKRPI+VD RPI+A NK KLN+NS+
Sbjct: 381 TVDVDLSLEGPAWKVSRRQGTIRLRNNGDFFLSSEGKRPIFVDSRPILAGNKMKLNNNSV 440

Query: 159 IEIAGLHFTFLVNQSLIQSLRAD 181
           IEIAGL FTFL+NQ LI  +R +
Sbjct: 441 IEIAGLRFTFLINQELISVIRQE 463

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332029635|gb|EGI69524.1| Microspherule protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|56090160|ref|NP_998438.1| microspherule protein 1 [Danio rerio] gi|41351103|gb|AAH65654.1| Microspherule protein 1 [Danio rerio] Back     alignment and taxonomy information
>gi|322801274|gb|EFZ21961.1| hypothetical protein SINV_06956 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|33416935|gb|AAH55653.1| Microspherule protein 1 [Danio rerio] Back     alignment and taxonomy information
>gi|328790508|ref|XP_624688.3| PREDICTED: microspherule protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340728547|ref|XP_003402583.1| PREDICTED: microspherule protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350423002|ref|XP_003493355.1| PREDICTED: microspherule protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|10445201|gb|AAG16624.1| target of Jun 3 [Coturnix coturnix] Back     alignment and taxonomy information
>gi|161089085|gb|ABV21625.2| target of Jun 3 [Coturnix coturnix] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
ZFIN|ZDB-GENE-040426-2434472 mcrs1 "microspherule protein 1 0.640 0.275 0.623 7.9e-46
UNIPROTKB|H9KYV0458 MCRS1 "Uncharacterized protein 0.640 0.283 0.615 2.1e-45
UNIPROTKB|Q08E44462 MCRS1 "Uncharacterized protein 0.640 0.281 0.607 1.5e-44
UNIPROTKB|E2R2M5271 MCRS1 "Uncharacterized protein 0.640 0.479 0.607 1.5e-44
UNIPROTKB|Q7Z372271 DKFZp686N07218 "Putative uncha 0.640 0.479 0.607 1.5e-44
UNIPROTKB|Q96EZ8462 MCRS1 "Microspherule protein 1 0.640 0.281 0.607 1.5e-44
RGD|1311607462 Mcrs1 "microspherule protein 1 0.640 0.281 0.607 1.5e-44
UNIPROTKB|G3V9E0462 Mcrs1 "Protein Mcrs1" [Rattus 0.640 0.281 0.607 1.5e-44
MGI|MGI:1858420462 Mcrs1 "microspherule protein 1 0.640 0.281 0.607 1.9e-44
FB|FBgn0263832578 Rcd5 "Reduction in Cnn dots 5" 0.640 0.224 0.557 2.6e-35
ZFIN|ZDB-GENE-040426-2434 mcrs1 "microspherule protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 81/130 (62%), Positives = 110/130 (84%)

Query:    52 WAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAW 111
             W V+VD +TG N+P+ D QT A LRGR VRYLM+ R++TLGR+T D  +D+DLSLEGPAW
Sbjct:   336 WQVLVDSITGMNSPDFDNQTLAALRGRMVRYLMRSREITLGRATKDKQIDVDLSLEGPAW 395

Query:   112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVN 171
             K++R+Q  I+++NNGDFFIANEG+RPIY+DGRP+++ NK+KLN+NS++EIAGL F FL+N
Sbjct:   396 KITRKQGIIKLKNNGDFFIANEGRRPIYIDGRPVLSGNKWKLNNNSVMEIAGLRFVFLIN 455

Query:   172 QSLIQSLRAD 181
             Q LI  ++A+
Sbjct:   456 QELISLIKAE 465
GO:0003674 "molecular_function" evidence=ND
UNIPROTKB|H9KYV0 MCRS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q08E44 MCRS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2M5 MCRS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z372 DKFZp686N07218 "Putative uncharacterized protein DKFZp686N07218" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96EZ8 MCRS1 "Microspherule protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311607 Mcrs1 "microspherule protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9E0 Mcrs1 "Protein Mcrs1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1858420 Mcrs1 "microspherule protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0263832 Rcd5 "Reduction in Cnn dots 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 2e-10
pfam0049867 pfam00498, FHA, FHA domain 4e-08
smart0024052 smart00240, FHA, Forkhead associated domain 5e-06
TIGR03354 396 TIGR03354, VI_FHA, type VI secretion system FHA do 2e-05
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 82  YLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIR-MRNNGDFFIANEGKRPIYV 140
           YL      T+GR + +  + +D         VSRR A IR   + G   I        +V
Sbjct: 17  YLDPGGTYTIGRDSDNCDIVLDDP------SVSRRHAVIRYDGDGGVVLIDLGSTNGTFV 70

Query: 141 DGRPIIASNKYKLNHNSIIEIAGLHFTFLVN 171
           +G+ +      +L    +I +     +F   
Sbjct: 71  NGQRVSPGEPVRLRDGDVIRLGNTSISFRFE 101

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
KOG2293|consensus547 100.0
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.67
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.6
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.45
COG3456 430 Predicted component of the type VI protein secreti 99.26
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.21
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.19
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.05
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 97.95
KOG1882|consensus293 97.93
KOG0245|consensus 1221 97.91
KOG1881|consensus 793 97.68
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 97.63
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.3
KOG1880|consensus 337 96.92
TIGR02500 410 type_III_yscD type III secretion apparatus protein 96.76
KOG0615|consensus 475 96.63
KOG2293|consensus547 96.43
KOG0241|consensus 1714 95.91
KOG1892|consensus 1629 94.74
PRK1150770 ribosome-associated protein; Provisional 86.02
COG250173 S4-like RNA binding protein [Replication, recombin 83.16
PRK0648865 sulfur carrier protein ThiS; Validated 81.12
PRK0643767 hypothetical protein; Provisional 80.27
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 80.21
>KOG2293|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-39  Score=300.71  Aligned_cols=182  Identities=35%  Similarity=0.518  Sum_probs=170.3

Q ss_pred             CCCceeecccCCccccccCCCCCCCcccccc--cchhH-----H---HHHHHHHHHhhhcceeeecccCC-CCCCCCCc-
Q psy10577          3 NNGDFFIANEGKRPIYVDGRPIIASNKYKLN--HNSII-----E---KELKKVEEEMKNWAVIVDHVTGS-NTPELDKQ-   70 (203)
Q Consensus         3 ~~~~~~i~nfsd~e~~I~d~~L~~~~de~L~--~El~~-----~---~~i~~Le~~~~~~~~~v~~v~~~-~~~~~~~~-   70 (203)
                      +-+|+  ++|.++|+.+++..+.+..||+|+  +|..+     +   +.++.||+++.+|+++++++++. .+++++.+ 
T Consensus       348 ~~sd~--l~~~~ae~q~~~~~~~~e~DE~Le~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqr  425 (547)
T KOG2293|consen  348 NESDH--LRRIDAEDQIQGENYNEESDEELESDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQR  425 (547)
T ss_pred             cCCcc--cccccchhccchhhhcccccccccchHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhh
Confidence            45677  899999999999999999999999  77766     4   99999999999999999999884 45555554 


Q ss_pred             ------eEEEEEeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEE
Q psy10577         71 ------TYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRP  144 (203)
Q Consensus        71 ------~lavL~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~  144 (203)
                            |+|||+|+..+|+|++++|++||++.+..|||||+++|++++|||+||.|++..+|.|+|+|+||..|+|||.+
T Consensus       426 ai~~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~  505 (547)
T KOG2293|consen  426 AIAFHGAIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGE  505 (547)
T ss_pred             hhhhcceeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCcc
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCceecCCCCEEEECCEEEEEEeChHHHHHHHcCCCCCc
Q psy10577        145 IIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTT  186 (203)
Q Consensus       145 i~~g~~~~L~~gd~Ieig~~~f~F~~n~~~v~~ir~~~~~~~  186 (203)
                      |.+|+++.|+++|+|||.+++|+|++|+++|..++++.+|++
T Consensus       506 l~~gq~~~L~~nclveIrg~~FiF~~N~~~v~~~l~~~~K~~  547 (547)
T KOG2293|consen  506 LDRGQKVILKNNCLVEIRGLRFIFEINQEAVGQYLKENAKRK  547 (547)
T ss_pred             ccCCceEEeccCcEEEEccceEEEeecHHHHHHHHHhccccC
Confidence            999999999999999999999999999999999999999863

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>KOG1882|consensus Back     alignment and domain information
>KOG0245|consensus Back     alignment and domain information
>KOG1881|consensus Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG1880|consensus Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0615|consensus Back     alignment and domain information
>KOG2293|consensus Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>PRK11507 ribosome-associated protein; Provisional Back     alignment and domain information
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair] Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 2e-07
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 5e-07
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 7e-07
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 9e-07
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 2e-06
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 4e-06
2eh0_A130 KLP, kinesin-like protein KIF1B; FHA domain, KIAA0 8e-06
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-05
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 2e-05
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 3e-05
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 4e-05
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-04
2xt9_B115 Putative signal transduction protein GARA; lyase-s 1e-04
3po8_A100 RV0020C protein, putative uncharacterized protein 2e-04
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 5e-04
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 7e-04
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 81  RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 139
            + +       GR       + D+ ++ P   VS++   I   +  +  + N     P  
Sbjct: 27  HFPLSLSTCLFGRGI-----ECDIRIQLPV--VSKQHCKIE-IHEQEAILHNFSSTNPTQ 78

Query: 140 VDGRPIIASNKYKLNHNSIIEIAGLHFTF 168
           V+G  I      +L H  +I I    F +
Sbjct: 79  VNGSVI--DEPVRLKHGDVITIIDRSFRY 105
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.76
3po8_A100 RV0020C protein, putative uncharacterized protein 99.75
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.75
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.74
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.74
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.74
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.73
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.73
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.72
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.72
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.72
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.71
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.71
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.71
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.7
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.69
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.69
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.68
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.68
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.67
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.66
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.66
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.65
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.63
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.62
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.61
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.59
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.58
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.4
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.32
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.3
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.25
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 99.25
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 99.12
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.09
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.07
4a0e_A123 YSCD, type III secretion protein; transport protei 98.85
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.48
2cu3_A64 Unknown function protein; thermus thermophilus HB8 84.1
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 81.96
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 80.64
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
Probab=99.76  E-value=6e-18  Score=127.33  Aligned_cols=94  Identities=23%  Similarity=0.344  Sum_probs=75.6

Q ss_pred             ceEEEEEeec--eEEEeecC-ceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEe
Q psy10577         70 QTYAVLRGRA--VRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPI  145 (203)
Q Consensus        70 ~~lavL~G~~--~~~~m~~~-~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i  145 (203)
                      ..|.++.|..  ..|.+... .++|||+..++  ||-|.    ...|||+||+|.++.++.|+|+|+|+ |||||||+++
T Consensus         5 ~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~--di~l~----d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i   78 (106)
T 3gqs_A            5 FLLKVLAGANIGAEFHLDSGKTYIVGSDPQVA--DIVLS----DMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKI   78 (106)
T ss_dssp             EEEEECC-CCTTCEEEECTTCEEEEESCTTTC--SEECC----CTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEEC
T ss_pred             EEEEEEeCCCCcEEEEECCCCEEEEeECCCcC--CEEeC----CCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEEC
Confidence            3566777654  47888875 58999987433  44442    37899999999998677899999976 9999999999


Q ss_pred             cCCCceecCCCCEEEECCEEEEEEeC
Q psy10577        146 IASNKYKLNHNSIIEIAGLHFTFLVN  171 (203)
Q Consensus       146 ~~g~~~~L~~gd~Ieig~~~f~F~~n  171 (203)
                      .+  +++|++||+|+||...|.|...
T Consensus        79 ~~--~~~L~~Gd~i~~G~~~~~~~~~  102 (106)
T 3gqs_A           79 EH--QSTLSANQVVALGTTLFLLVDY  102 (106)
T ss_dssp             SS--EEECCTTCCEEETTEEEEEEEE
T ss_pred             CC--CeECCCCCEEEECCEEEEEEcc
Confidence            85  6899999999999999999753
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 2e-08
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 3e-07
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 2e-06
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 3e-05
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 7e-05
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 76  RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 135
                  L    +VT+GR      V   L  +     +SR    ++    G + I +   
Sbjct: 13  MSAGWLLLEDGCEVTVGRG---FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKS 69

Query: 136 R-PIYVDGRPIIASNKYKLNHNSIIEI 161
              ++++   +     Y ++    I++
Sbjct: 70  LNGVWLNRARLEPLRVYSIHQGDYIQL 96
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.78
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.73
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.72
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.72
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.7
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.66
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.66
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.64
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.51
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.49
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.42
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 82.47
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=5.3e-19  Score=130.64  Aligned_cols=93  Identities=26%  Similarity=0.331  Sum_probs=75.8

Q ss_pred             CceEEEEEee--ceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEe
Q psy10577         69 KQTYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPI  145 (203)
Q Consensus        69 ~~~lavL~G~--~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i  145 (203)
                      .+++|.|.+-  ..+|++.+..++|||+..+   ||-|.    .+.|||+||.|.++ ++.|+|+|+++ |||||||++|
T Consensus         3 ~~~~~~l~~~~~G~~~~l~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGt~vNg~~i   74 (99)
T d2ff4a3           3 QQAVAYLHDIASGRGYPLQAAATRIGRLHDN---DIVLD----SANVSRHHAVIVDT-GTNYVINDLRSSNGVHVQHERI   74 (99)
T ss_dssp             SBCCCEEEETTTCCEEECCSSEEEEESSTTS---SEECC----CTTSCTTCEEEEEC-SSCEEEEECSCSSCCEETTEEC
T ss_pred             CccEEEEEcCCCCCEEEECCCCEEEeeCcCC---CEEEC----CccccceeEEEEEe-CCEEEEEECCCcCCCeECCEEc
Confidence            3456666532  3579999999999998753   44442    36899999999987 46899999986 9999999999


Q ss_pred             cCCCceecCCCCEEEECCEEEEEEeC
Q psy10577        146 IASNKYKLNHNSIIEIAGLHFTFLVN  171 (203)
Q Consensus       146 ~~g~~~~L~~gd~Ieig~~~f~F~~n  171 (203)
                      .  ++++|++||+|+||...|.|++.
T Consensus        75 ~--~~~~L~~Gd~i~iG~~~~~f~~~   98 (99)
T d2ff4a3          75 R--SAVTLNDGDHIRICDHEFTFQIS   98 (99)
T ss_dssp             S--SEEEECTTCEEEETTEEEEEECS
T ss_pred             C--CceECCCCCEEEECCEEEEEEEe
Confidence            6  47899999999999999999864
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure