Psyllid ID: psy10625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MSEFARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGERRPSK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEHHcHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEHcHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSEFARMEVEDLFIdladgtffflffkskpypnqiySHFQARMEVEDLFIDLADGKKLLKLLEIIsgeklgkpnngkmrvHKVENVNKSLAFlhtkpgerrpsk
Flexible Loop (DISEMBL)
MSEFARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIisgeklgkpnngkmrVHKVENvnkslaflhtkpgerrpsk
Low Complexity Region (SEG)
MSEFARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGkkllkllEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGERRPSK
Disordered region (IsUnstruct)
*******EVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGE************************************
Disordered Region (DISOPRED)
************FIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIIS***********MRVHKVENVNKSLAFLHTKPG******
Disordered Region (DISEMBL)
MSEFARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH**********
Disordered Region (DISPRO)
****ARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEFARMEVEDLFIDLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGERRPSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q00963	2291	Spectrin beta chain OS=Dr	no	N/A	0.653	0.029	0.463	1e-12
Q7TPR4	892	Alpha-actinin-1 OS=Mus mu	yes	N/A	0.576	0.067	0.540	3e-11
Q9Z1P2	892	Alpha-actinin-1 OS=Rattus	yes	N/A	0.576	0.067	0.540	3e-11
Q2PFV7	892	Alpha-actinin-1 OS=Macaca	N/A	N/A	0.576	0.067	0.540	3e-11
Q3B7N2	892	Alpha-actinin-1 OS=Bos ta	no	N/A	0.576	0.067	0.540	3e-11
P12814	892	Alpha-actinin-1 OS=Homo s	yes	N/A	0.576	0.067	0.540	3e-11
P05094	893	Alpha-actinin-1 OS=Gallus	yes	N/A	0.576	0.067	0.540	3e-11
Q9NRC6	3674	Spectrin beta chain, non-	no	N/A	0.615	0.017	0.468	5e-11
Q9QWN8	2388	Spectrin beta chain, non-	no	N/A	0.644	0.028	0.470	6e-11
Q62261	2363	Spectrin beta chain, non-	no	N/A	0.644	0.028	0.455	6e-11

>sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanogaster GN=beta-Spec PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 26  FKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVE 84
            + K +   + SH  +    + DL++D+ DGK L+KLLE++SGE+L KP  GKMR+H +E
Sbjct: 51  VQKKTFTKWVNSHLCRVNCRIADLYVDMRDGKHLIKLLEVLSGERLPKPTKGKMRIHCLE 110

Query: 85  NVNKSLAFL 93
           NV+K+L FL
Sbjct: 111 NVDKALQFL 119

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. Interacts with calmodulin in a calcium-dependent manner.
Drosophila melanogaster (taxid: 7227)

>sp|Q7TPR4|ACTN1_MOUSE Alpha-actinin-1 OS=Mus musculus GN=Actn1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 43  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 102

Query: 96  K 96
           K
Sbjct: 103 K 103

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Mus musculus (taxid: 10090)

>sp|Q9Z1P2|ACTN1_RAT Alpha-actinin-1 OS=Rattus norvegicus GN=Actn1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 43  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 102

Query: 96  K 96
           K
Sbjct: 103 K 103

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Rattus norvegicus (taxid: 10116)

>sp|Q2PFV7|ACTN1_MACFA Alpha-actinin-1 OS=Macaca fascicularis GN=ACTN1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 43  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 102

Query: 96  K 96
           K
Sbjct: 103 K 103

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Macaca fascicularis (taxid: 9541)

>sp|Q3B7N2|ACTN1_BOVIN Alpha-actinin-1 OS=Bos taurus GN=ACTN1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 43  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 102

Query: 96  K 96
           K
Sbjct: 103 K 103

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Bos taurus (taxid: 9913)

>sp|P12814|ACTN1_HUMAN Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 43  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 102

Query: 96  K 96
           K
Sbjct: 103 K 103

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Homo sapiens (taxid: 9606)

>sp|P05094|ACTN1_CHICK Alpha-actinin-1 OS=Gallus gallus GN=ACTN1 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 37  SHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
           SH  +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 44  SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 103

Query: 96  K 96
           K
Sbjct: 104 K 104

F-actin cross-linking protein is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Gallus gallus (taxid: 9031)

>sp|Q9NRC6|SPTN5_HUMAN Spectrin beta chain, non-erythrocytic 5 OS=Homo sapiens GN=SPTBN5 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 47/64 (73%)

Query: 33  NQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAF 92
           N ++   QA +++ +L+ +LADG  LL+LLE+ISGE L  P+ G++RVH +EN +++LAF
Sbjct: 65  NNVFQCGQAGIKIRNLYTELADGIHLLRLLELISGEALPPPSRGRLRVHFLENSSRALAF 124

Query: 93  LHTK 96
           L  K
Sbjct: 125 LRAK 128

Homo sapiens (taxid: 9606)

>sp|Q9QWN8|SPTN2_RAT Spectrin beta chain, non-erythrocytic 2 OS=Rattus norvegicus GN=Sptbn2 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 27  KSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVEN 85
           + K +   + SH  +    V DL+ DL DG+ LL+LLE++SGE L KP  G+MR+H +EN
Sbjct: 59  QKKTFTKWVNSHLARVTCRVGDLYSDLRDGRNLLRLLEVLSGETLPKPTKGRMRIHCLEN 118

Query: 86  VNKSLAFL 93
           V+K+L FL
Sbjct: 119 VDKALQFL 126

Probably plays an important role in neuronal membrane skeleton.

Rattus norvegicus (taxid: 10116)

>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 27  KSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVEN 85
           + K +   + SH  +    + DL+ DL DG+ L+KLLE++SGE+L KP  G+MR+H +EN
Sbjct: 56  QKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLEN 115

Query: 86  VNKSLAFL 93
           V+K+L FL
Sbjct: 116 VDKALQFL 123

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
242020108	4215	Spectrin beta chain, putative [Pediculus	0.701	0.017	0.783	2e-23
270002146	3935	hypothetical protein TcasGA2_TC001109 [T	0.701	0.018	0.743	2e-23
91077512	3920	PREDICTED: similar to beta chain spectri	0.701	0.018	0.743	2e-23
328720389	4047	PREDICTED: spectrin beta chain-like isof	0.701	0.018	0.743	4e-23
328720391	4083	PREDICTED: spectrin beta chain-like isof	0.701	0.017	0.743	5e-23
340717274	4143	PREDICTED: spectrin beta chain, brain 4-	0.701	0.017	0.743	8e-23
307173781	4197	Spectrin beta chain, brain 4 [Camponotus	0.75	0.018	0.708	9e-23
350407651	4247	PREDICTED: spectrin beta chain, brain 4-	0.701	0.017	0.743	9e-23
340717276	4224	PREDICTED: spectrin beta chain, brain 4-	0.701	0.017	0.743	9e-23
427798219	3912	hypothetical protein, partial [Rhipiceph	0.701	0.018	0.770	1e-22

>gi|242020108|ref|XP_002430498.1| Spectrin beta chain, putative [Pediculus humanus corporis] gi|212515655|gb|EEB17760.1| Spectrin beta chain, putative [Pediculus humanus corporis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 24  LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
           L  + K +   + S  Q ARMEVEDLF DLADGKKLLKLLEIISGEKLGKPNNGKMRVHK
Sbjct: 198 LHIQKKTFTKWMNSFLQKARMEVEDLFTDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 257

Query: 83  VENVNKSLAFLHTK 96
           VENVNKSLAFL TK
Sbjct: 258 VENVNKSLAFLQTK 271

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002146|gb|EEZ98593.1| hypothetical protein TcasGA2_TC001109 [Tribolium castaneum]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L+ + K +   + S  Q  RMEV+DLF+DLADGKKLLKLLEIISGEKL KPNNGKMRVHK
Sbjct: 23 LYIQKKTFTKWMNSFLQKVRMEVDDLFVDLADGKKLLKLLEIISGEKLAKPNNGKMRVHK 82

Query: 83 VENVNKSLAFLHTK 96
          +ENVNKSLAFLHTK
Sbjct: 83 IENVNKSLAFLHTK 96

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077512|ref|XP_969687.1| PREDICTED: similar to beta chain spectrin [Tribolium castaneum]

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L+ + K +   + S  Q  RMEV+DLF+DLADGKKLLKLLEIISGEKL KPNNGKMRVHK
Sbjct: 23 LYIQKKTFTKWMNSFLQKVRMEVDDLFVDLADGKKLLKLLEIISGEKLAKPNNGKMRVHK 82

Query: 83 VENVNKSLAFLHTK 96
          +ENVNKSLAFLHTK
Sbjct: 83 IENVNKSLAFLHTK 96

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720389|ref|XP_003247015.1| PREDICTED: spectrin beta chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L  + K +   + S  Q  RMEV+DLF+DLADG+KLLKLLEIISGEKLGKPNNG+MRVHK
Sbjct: 23 LHIQKKTFTKWMNSFLQKVRMEVDDLFVDLADGRKLLKLLEIISGEKLGKPNNGRMRVHK 82

Query: 83 VENVNKSLAFLHTK 96
          VENVNKSLAFLHTK
Sbjct: 83 VENVNKSLAFLHTK 96

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720391|ref|XP_001946129.2| PREDICTED: spectrin beta chain-like isoform 3 [Acyrthosiphon pisum]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L  + K +   + S  Q  RMEV+DLF+DLADG+KLLKLLEIISGEKLGKPNNG+MRVHK
Sbjct: 23 LHIQKKTFTKWMNSFLQKVRMEVDDLFVDLADGRKLLKLLEIISGEKLGKPNNGRMRVHK 82

Query: 83 VENVNKSLAFLHTK 96
          VENVNKSLAFLHTK
Sbjct: 83 VENVNKSLAFLHTK 96

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717274|ref|XP_003397110.1| PREDICTED: spectrin beta chain, brain 4-like isoform 1 [Bombus terrestris]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L  + K +   I S   +ARMEVEDLF DLADGKKLLKLLEIISGE+L KPNNG+MRVHK
Sbjct: 23 LHIQKKTFTKWINSFLLKARMEVEDLFTDLADGKKLLKLLEIISGERLAKPNNGRMRVHK 82

Query: 83 VENVNKSLAFLHTK 96
          +ENVNKSLAFLHTK
Sbjct: 83 IENVNKSLAFLHTK 96

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173781|gb|EFN64568.1| Spectrin beta chain, brain 4 [Camponotus floridanus]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 24  LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
           L  + K +   I S   +ARMEV+DLF DLADGKKLLKLLEIISGE+L KPNNG+MRVHK
Sbjct: 23  LHIQKKTFTKWINSFLLKARMEVDDLFTDLADGKKLLKLLEIISGERLAKPNNGRMRVHK 82

Query: 83  VENVNKSLAFLHTKPGERR 101
           +ENVNKSLAFLHTK   RR
Sbjct: 83  IENVNKSLAFLHTKVRGRR 101

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407651|ref|XP_003488149.1| PREDICTED: spectrin beta chain, brain 4-like [Bombus impatiens]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 24  LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
           L  + K +   I S   +ARMEVEDLF DLADGKKLLKLLEIISGE+L KPNNG+MRVHK
Sbjct: 102 LHIQKKTFTKWINSFLLKARMEVEDLFTDLADGKKLLKLLEIISGERLAKPNNGRMRVHK 161

Query: 83  VENVNKSLAFLHTK 96
           +ENVNKSLAFLHTK
Sbjct: 162 IENVNKSLAFLHTK 175

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717276|ref|XP_003397111.1| PREDICTED: spectrin beta chain, brain 4-like isoform 2 [Bombus terrestris]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 24  LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
           L  + K +   I S   +ARMEVEDLF DLADGKKLLKLLEIISGE+L KPNNG+MRVHK
Sbjct: 79  LHIQKKTFTKWINSFLLKARMEVEDLFTDLADGKKLLKLLEIISGERLAKPNNGRMRVHK 138

Query: 83  VENVNKSLAFLHTK 96
           +ENVNKSLAFLHTK
Sbjct: 139 IENVNKSLAFLHTK 152

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427798219|gb|JAA64561.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/74 (77%), Positives = 63/74 (85%), Gaps = 1/74 (1%)

Query: 24 LFFKSKPYPNQIYSHFQ-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 82
          L  + K +   + S  Q ARMEV+DLF+DLADGKKLLKLLEIISGEKLGKPNNGKMRVHK
Sbjct: 16 LHIQKKTFTKWMNSFLQKARMEVDDLFVDLADGKKLLKLLEIISGEKLGKPNNGKMRVHK 75

Query: 83 VENVNKSLAFLHTK 96
          +ENVNKSLAFLHTK
Sbjct: 76 IENVNKSLAFLHTK 89

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
FB|FBgn0004167	4337	kst "karst" [Drosophila melano	0.701	0.016	0.621	3.4e-16
UNIPROTKB|F1NCV1	169	ACTN1 "Alpha-actinin-1" [Gallu	0.576	0.355	0.475	4.1e-10
UNIPROTKB|F1NJ54	175	ACTN1 "Alpha-actinin-1" [Gallu	0.576	0.342	0.475	4.1e-10
UNIPROTKB|G3V5M4	126	ACTN1 "Alpha-actinin-1" [Homo	0.576	0.476	0.475	4.1e-10
WB|WBGene00004855	4166	sma-1 [Caenorhabditis elegans	0.548	0.013	0.578	5.9e-10
UNIPROTKB|G3V2N5	261	ACTN1 "Alpha-actinin-1" [Homo	0.576	0.229	0.475	7.9e-10
UNIPROTKB|E9PSP2	220	Sptbn1 "Protein Sptbn1" [Rattu	0.634	0.3	0.420	1.4e-09
UNIPROTKB|F1M1N4	867	Actn1 "Alpha-actinin-1" [Rattu	0.673	0.080	0.436	3.1e-09
UNIPROTKB|H9L0H3	446	H9L0H3 "Uncharacterized protei	0.576	0.134	0.475	5e-09
ZFIN|ZDB-GENE-081113-4	902	actn1 "actinin, alpha 1" [Dani	0.576	0.066	0.475	5.3e-09

FB|FBgn0004167 kst "karst" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 46/74 (62%), Positives = 54/74 (72%)

Query:    24 LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHK 82
             L  + K +   + S   +A+MEVEDLF DLADG       EIIS EKLGKPN+G+MRVHK
Sbjct:    74 LHIQKKTFTKWMNSFLIKAKMEVEDLFTDLADGIKLLKLLEIISSEKLGKPNSGRMRVHK 133

Query:    83 VENVNKSLAFLHTK 96
             +ENVNKSLAFLHTK
Sbjct:   134 IENVNKSLAFLHTK 147

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007009 "plasma membrane organization" evidence=TAS

GO:0003779 "actin binding" evidence=ISS;IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0008091 "spectrin" evidence=ISS

GO:0016327 "apicolateral plasma membrane" evidence=TAS

GO:0045186 "zonula adherens assembly" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0032432 "actin filament bundle" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IMP

UNIPROTKB|F1NCV1 ACTN1 "Alpha-actinin-1" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    44 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 103

Query:    96 K 96
             K
Sbjct:   104 K 104

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1NJ54 ACTN1 "Alpha-actinin-1" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    44 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 103

Query:    96 K 96
             K
Sbjct:   104 K 104

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|G3V5M4 ACTN1 "Alpha-actinin-1" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    20 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 79

Query:    96 K 96
             K
Sbjct:    80 K 80

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

WB|WBGene00004855 sma-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    40 QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96
             +A +E+ DLF D+ DG       EIISG+KLGKPN G+MRV KVEN+NK L FL  K
Sbjct:   170 RASLEIVDLFEDVGDGIMLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFLKKK 226

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0046622 "positive regulation of organ growth" evidence=IMP

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IGI;IMP

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

UNIPROTKB|G3V2N5 ACTN1 "Alpha-actinin-1" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    22 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 81

Query:    96 K 96
             K
Sbjct:    82 K 82

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E9PSP2 Sptbn1 "Protein Sptbn1" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query:    27 KSKPYPNQIYSHFQARME--VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVE 84
             + K +   + SH  AR+   + DL+ DL DG       E++SGE+L KP  G+MR+H +E
Sbjct:    43 QKKTFTKWVNSHL-ARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLE 101

Query:    85 NVNKSLAFL 93
             NV+K+L FL
Sbjct:   102 NVDKALQFL 110

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1M1N4 Actn1 "Alpha-actinin-1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query:    27 KSKPYPNQIYSHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
             K K +     SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ N
Sbjct:     8 KKKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISN 67

Query:    86 VNKSLAFLHTK 96
             VNK+L F+ +K
Sbjct:    68 VNKALDFIASK 78

GO:0003779 "actin binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

UNIPROTKB|H9L0H3 H9L0H3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    37 SHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIAS 96

Query:    96 K 96
             K
Sbjct:    97 K 97

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-081113-4 actn1 "actinin, alpha 1" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    37 SHFQ-ARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
             SH + A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct:    53 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALGFIAS 112

Query:    96 K 96
             K
Sbjct:   113 K 113

GO:0051764 "actin crosslink formation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0051017 "actin filament bundle assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P12814	ACTN1_HUMAN	No assigned EC number	0.5409	0.5769	0.0672	yes	N/A
Q7TPR4	ACTN1_MOUSE	No assigned EC number	0.5409	0.5769	0.0672	yes	N/A
Q9Z1P2	ACTN1_RAT	No assigned EC number	0.5409	0.5769	0.0672	yes	N/A
P05094	ACTN1_CHICK	No assigned EC number	0.5409	0.5769	0.0671	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	104
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	3e-08
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	2e-06
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	4e-06
smart00033	101	smart00033, CH, Calponin homology domain	1e-04

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPG 98
          V + F DL DG  L  LL  +    +      K R  K+EN+N +L F   K G
Sbjct: 20 VTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLENLNLALEFAEKKLG 73

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 44 EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTK 96
          E  DL  DL DG KL +LLE +  +  G+ N   + R+H +ENV+  L F+  K
Sbjct: 29 EFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGK 82

Length = 612

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH 94
          + +   DL DG  L KLL  +S + + K   N   R  ++EN+N +L F  
Sbjct: 22 INNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAE 72

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGK--PNNGKMRVHKVENVNKSLAFLH 94
          V +   DL DG  L  LL  +S   + K        R  K+EN+N +L+F  
Sbjct: 19 VTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIENINLALSFAE 70

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
KOG0517|consensus	2473		99.9
cd00014	107	CH Calponin homology domain; actin-binding domain	99.53
smart00033	103	CH Calponin homology domain. Actin binding domains	99.5
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	99.45
KOG0035|consensus	890		99.41
KOG3631|consensus	365		99.4
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.29
KOG0046|consensus	627		99.12
KOG2046|consensus	193		98.18
KOG3631|consensus	365		98.02
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	97.53
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	97.46
KOG0516|consensus	1047		96.84
KOG0046|consensus	627		96.82
COG5199	178	SCP1 Calponin [Cytoskeleton]	96.6
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	96.53
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.14
KOG0518|consensus	1113		92.61
KOG2996|consensus	865		90.27
KOG0532|consensus	722		84.34

>KOG0517|consensus

Probab=99.90  E-value=2.1e-24  Score=191.82  Aligned_cols=79  Identities=41%  Similarity=0.645  Sum_probs=74.9

Q ss_pred             hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      ..+.+||||||+|||||| .+++.|.|||+||+||+.|+.|||+|||+.+|+|++|+||||++|||++||+||+...|.+
T Consensus        44 ERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhL  123 (2473)
T KOG0517|consen   44 EREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHL  123 (2473)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhccccc
Confidence            468899999999999999 8999999999999999999999999999999999999999999999999999999966643

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.53  E-value=3.4e-14  Score=92.69  Aligned_cols=75  Identities=24%  Similarity=0.264  Sum_probs=66.1

Q ss_pred             hhhchHHHHHhhcC-CCC-chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCCCC
Q psy10625         27 KSKPYPNQIYSHFQ-ARM-EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGERR  101 (104)
Q Consensus        27 Q~ktft~WvN~~L~-~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~~~  101 (104)
                      |++.+++|+|.++. ... .|+|+.++++||++|++|++.+++..++... +|..++++++|++.+++++++-||+..
T Consensus         2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~   79 (107)
T cd00014           2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV   79 (107)
T ss_pred             hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee
Confidence            67889999999994 333 6999999999999999999999999987644 488999999999999999999888653

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=99.50  E-value=6.9e-14  Score=90.33  Aligned_cols=72  Identities=29%  Similarity=0.380  Sum_probs=63.7

Q ss_pred             hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      ++.+++|+|+++ +. +..|+|+.++++||+.|++|++.+++..++...  .|++++++++|++.+++++++.|+.
T Consensus         2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~   77 (103)
T smart00033        2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGK   77 (103)
T ss_pred             hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCe
Confidence            578999999999 44 478999999999999999999999999988522  5888999999999999999999853

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=99.45  E-value=2.3e-14  Score=117.01  Aligned_cols=80  Identities=29%  Similarity=0.383  Sum_probs=73.6

Q ss_pred             chhhhhhhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCC
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKP   97 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~g   97 (104)
                      ..|+.+|+||||.|.|..| . ....+.||.+|++||+.|++||++++.+..++|+ .|.+|+|+++|++.+++|++..|
T Consensus         4 ~kwq~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~kg   83 (612)
T COG5069           4 KKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGKG   83 (612)
T ss_pred             HHHHHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccCC
Confidence            4699999999999999999 4 3468999999999999999999999999999988 69999999999999999999999


Q ss_pred             CCC
Q psy10625         98 GER  100 (104)
Q Consensus        98 i~~  100 (104)
                      +.+
T Consensus        84 ~~l   86 (612)
T COG5069          84 VKL   86 (612)
T ss_pred             cee
Confidence            543

>KOG0035|consensus

Probab=99.41  E-value=2.5e-14  Score=122.93  Aligned_cols=87  Identities=39%  Similarity=0.573  Sum_probs=80.3

Q ss_pred             ccccccCcCCcchhhhhhhhchHHHHHhhc--CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHH
Q psy10625         10 EDLFIDLADGTFFFLFFKSKPYPNQIYSHF--QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVN   87 (104)
Q Consensus        10 ~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L--~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~   87 (104)
                      -.+++|++     |+++|.+|||.|+|+||  +.+..|.++..|++||+.|+.|+++++|+.++++.++++|+|+++|++
T Consensus        16 ~~~~~~~~-----~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~~~~~r~hk~En~~   90 (890)
T KOG0035|consen   16 AKFLLTPA-----WEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPTRGKMRVHKLENVN   90 (890)
T ss_pred             HHhhcCcc-----HHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCCCCccchhhhcccc
Confidence            34778888     99999999999999999  566789999999999999999999999999999888899999999999


Q ss_pred             HHHHHHhhCCCCCC
Q psy10625         88 KSLAFLHTKPGERR  101 (104)
Q Consensus        88 ~al~flk~~gi~~~  101 (104)
                      .+|.|+...|+...
T Consensus        91 ~~l~~~~sk~v~~~  104 (890)
T KOG0035|consen   91 KALVFIESKGVKLV  104 (890)
T ss_pred             ceEEEecccccccc
Confidence            99999999887654

>KOG3631|consensus

Probab=99.40  E-value=3.9e-13  Score=103.85  Aligned_cols=89  Identities=22%  Similarity=0.254  Sum_probs=82.5

Q ss_pred             cccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC---CCccHHHHHH
Q psy10625          9 VEDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVE   84 (104)
Q Consensus         9 ~~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~---~p~~r~~kie   84 (104)
                      +=|++||+|+|+   ..+.+++..++||.|| +.+..|++|.+.|.||+.|+-|+..|.|..+|-+.   .|.+--+++.
T Consensus       243 aFDtLFd~aPdK---ln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~  319 (365)
T KOG3631|consen  243 AFDTLFDHAPDK---LNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVH  319 (365)
T ss_pred             hHHHHHhhCcHH---HHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHH
Confidence            457999999988   8999999999999999 99999999999999999999999999999998643   7999999999


Q ss_pred             hHHHHHHHHhhCCCCC
Q psy10625         85 NVNKSLAFLHTKPGER  100 (104)
Q Consensus        85 Nv~~al~flk~~gi~~  100 (104)
                      ||++||++|++.|..-
T Consensus       320 NVsfAfeLm~D~GL~k  335 (365)
T KOG3631|consen  320 NVSFAFELMKDGGLEK  335 (365)
T ss_pred             HHHHHHHHHHccCcCC
Confidence            9999999999988753

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=99.29  E-value=6.5e-12  Score=81.80  Aligned_cols=73  Identities=25%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             hhchHHHHHhhc-CC--CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC-CCC--ccHHHHHHhHHHHHHHHhh-CCCCC
Q psy10625         28 SKPYPNQIYSHF-QA--RMEVEDLFIDLADGKKLLKLLEIISGEKLGKP-NNG--KMRVHKVENVNKSLAFLHT-KPGER  100 (104)
Q Consensus        28 ~ktft~WvN~~L-~~--~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~-~~p--~~r~~kieNv~~al~flk~-~gi~~  100 (104)
                      ++.+.+|+|+++ +.  +..|.|+.+||+||++|+.|++.+.+..++.. .+|  ++.+++++|++.|++++++ -|+..
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~   80 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP   80 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            467899999999 44  56899999999999999999999999987521 122  3899999999999999999 77764

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG0046|consensus

Probab=99.12  E-value=9.9e-11  Score=96.65  Aligned_cols=74  Identities=27%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             hhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC--CCCC----ccHHHHHHhHHHHHHHHhhCC
Q psy10625         24 LFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGK--PNNG----KMRVHKVENVNKSLAFLHTKP   97 (104)
Q Consensus        24 ~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~--~~~p----~~r~~kieNv~~al~flk~~g   97 (104)
                      .....|+|+.|+|+ |+..++|+++|+|++||.+|.++++.++...+..  .++|    ++.+.++|||++|++.+++.+
T Consensus       386 ~~reer~fr~WmNS-lgv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~  464 (627)
T KOG0046|consen  386 ESREERTFRLWMNS-LGVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLK  464 (627)
T ss_pred             HHHHHHHHHHHHHh-cCCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcc
Confidence            56678999999999 9999999999999999999999999999877642  2232    456999999999999998854


Q ss_pred             C
Q psy10625         98 G   98 (104)
Q Consensus        98 i   98 (104)
                      .
T Consensus       465 F  465 (627)
T KOG0046|consen  465 F  465 (627)
T ss_pred             e
Confidence            3

>KOG2046|consensus

Probab=98.18  E-value=8e-06  Score=60.34  Aligned_cols=77  Identities=19%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             hhhhhhchHHHHHhhcCCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         24 LFFKSKPYPNQIYSHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        24 ~~~Q~ktft~WvN~~L~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      .....+-.+.||-..+..+ ..=.|+.+-|+||++||.|+..|.+..+++.+.|++-++++||++.=++++++-|++-
T Consensus        23 ~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~  100 (193)
T KOG2046|consen   23 DDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKKYGVPE  100 (193)
T ss_pred             CHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHhcCCCh
Confidence            4445666889998854333 2346899999999999999999999666665589999999999999999999988864

>KOG3631|consensus

Probab=98.02  E-value=1.4e-05  Score=62.31  Aligned_cols=64  Identities=25%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             ccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC
Q psy10625         10 EDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP   73 (104)
Q Consensus        10 ~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~   73 (104)
                      .++|+||.+..++...--.+....|+|.-| ...+.|.+|.+||-||.+|-.|+|.|++.++.-.
T Consensus        74 ~r~yl~p~sr~DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~  138 (365)
T KOG3631|consen   74 KRTYLDPTSRKDPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLEVA  138 (365)
T ss_pred             ceeccCCccccChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhccch
Confidence            468999999988877777899999999999 7778999999999999999999999999998653

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=97.53  E-value=8.6e-05  Score=61.65  Aligned_cols=73  Identities=22%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHc-CCcCCC--CC-CC-----ccHHHHHHhHHHHHHHHhhC
Q psy10625         26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIIS-GEKLGK--PN-NG-----KMRVHKVENVNKSLAFLHTK   96 (104)
Q Consensus        26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls-~~~l~~--~~-~p-----~~r~~kieNv~~al~flk~~   96 (104)
                      ...+.||-|.|+ +...++|+|++.|++||..+++.++..- .-.+..  .. .|     -+|+.+++|+++|.+|....
T Consensus       379 fear~~Tf~l~~-~~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdlG~~~  457 (612)
T COG5069         379 FEARVFTFWLNS-LDVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDLGITE  457 (612)
T ss_pred             HHHHHHHHHHHH-hcCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhhhhhc
Confidence            346789999999 6677889999999999999999998766 333321  11 23     47999999999999999998


Q ss_pred             CCC
Q psy10625         97 PGE   99 (104)
Q Consensus        97 gi~   99 (104)
                      |+.
T Consensus       458 gf~  460 (612)
T COG5069         458 GFS  460 (612)
T ss_pred             Cee
Confidence            765

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=97.46  E-value=0.00027  Score=45.91  Aligned_cols=63  Identities=21%  Similarity=0.206  Sum_probs=51.4

Q ss_pred             HHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC--CC-CCc-cHHHHHHhHHHHHHHHhhC
Q psy10625         34 QIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGK--PN-NGK-MRVHKVENVNKSLAFLHTK   96 (104)
Q Consensus        34 WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~--~~-~p~-~r~~kieNv~~al~flk~~   96 (104)
                      |+|..- ....+|.|+..||+||..|++|+.-+-...++.  +. ++. +....+.|+....+|..+.
T Consensus         1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~   68 (85)
T PF11971_consen    1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSH   68 (85)
T ss_pred             CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHH
Confidence            555544 445789999999999999999999999998874  33 454 5779999999999998874

>KOG0516|consensus

Probab=96.84  E-value=0.00041  Score=61.53  Aligned_cols=75  Identities=28%  Similarity=0.403  Sum_probs=59.1

Q ss_pred             hhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC---CCC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         24 LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLG---KPN-NGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        24 ~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~---~~~-~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      ..+|+++|+.|++.++ +.-.+|.++++++.+ ...+.++++.++....   .+. .+..+++.++|+..++.+++...+
T Consensus        72 ~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~  150 (1047)
T KOG0516|consen   72 DLVQKKLFPDWLAKELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLA  150 (1047)
T ss_pred             HHHHHhccchhhHHHHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHH
Confidence            5899999999999999 778899999999996 5566666655554433   222 466789999999999999998654


Q ss_pred             C
Q psy10625         99 E   99 (104)
Q Consensus        99 ~   99 (104)
                      .
T Consensus       151 e  151 (1047)
T KOG0516|consen  151 E  151 (1047)
T ss_pred             H
Confidence            3

>KOG0046|consensus

Probab=96.82  E-value=0.00052  Score=57.52  Aligned_cols=74  Identities=22%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             hhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC-C-CC--CCccHHHHHHhHHHHH
Q psy10625         25 FFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLG-K-PN--NGKMRVHKVENVNKSL   90 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-~-~~--~p~~r~~kieNv~~al   90 (104)
                      +-.+..|.+|||++| ..         ++.-.+||...+||+.|+.|+..--..++. | .+  ++-+.+++.||.+.||
T Consensus       118 eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~l  197 (627)
T KOG0046|consen  118 EEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNLAL  197 (627)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhhHH
Confidence            445788999999999 32         123468999999999999999876677764 3 23  4557899999999999


Q ss_pred             HHHhhCCC
Q psy10625         91 AFLHTKPG   98 (104)
Q Consensus        91 ~flk~~gi   98 (104)
                      .--+.-|.
T Consensus       198 nSAkAiGc  205 (627)
T KOG0046|consen  198 NSAKAIGC  205 (627)
T ss_pred             hhcccccc
Confidence            87776553

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=96.60  E-value=0.0036  Score=45.13  Aligned_cols=74  Identities=20%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             hhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         25 FFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      ..|.+..+-||-.-| +.=.+=.||.+-|+||++||.+|...++..+. |.-.++-+-.++|++.-++|+++-+|+
T Consensus        12 ~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~-yKeSkmpFVQmenIs~Fin~~~k~~vp   86 (178)
T COG5199          12 DKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIK-YKESKMPFVQMENISSFINGLKKLRVP   86 (178)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccce-ecccCCceeeHHHHHHHHHHHHHhCCC
Confidence            456778899999988 32234579999999999999988766655543 344677888899999999999987753

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=96.53  E-value=0.0058  Score=43.67  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             HHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCCccHHHHHHhHHHH-HHHHhhCCCCCC
Q psy10625         32 PNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNGKMRVHKVENVNKS-LAFLHTKPGERR  101 (104)
Q Consensus        32 t~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p~~r~~kieNv~~a-l~flk~~gi~~~  101 (104)
                      .+|+++ |....++.++..||+||+.+++++...-.+.+.  .|..+.+...|+.|=+.- ..+++.-|+.+.
T Consensus         2 ~~WL~~-l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~   73 (158)
T PF06294_consen    2 LKWLQS-LDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIKLD   73 (158)
T ss_dssp             HHHHHH-S--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT----
T ss_pred             hHHHhc-CCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            479999 755667889999999999999999999988765  355678888999999988 899988887654

; PDB: 2EE7_A.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.14  E-value=0.093  Score=45.08  Aligned_cols=67  Identities=21%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             hhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC-----CCC-C-CccHHHHHHhHHHHHHHHhh
Q psy10625         27 KSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG-----KPN-N-GKMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        27 Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-----~~~-~-p~~r~~kieNv~~al~flk~   95 (104)
                      -..++..|+|+ +..+.++.+ +.||.||+.|..+|..|.+..+.     +.. . +.+..-++.|+...++-|..
T Consensus         8 l~~~Lv~Wv~t-f~~~~~~~~-~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~   81 (713)
T PF05622_consen    8 LCDSLVTWVQT-FNLSAPCSS-YEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKS   81 (713)
T ss_dssp             HHHHHHHHHTT----SS---S-HHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-CCCCCCcCC-HHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            45678999999 755555655 78999999999999999988664     222 1 23455588888888876654

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0518|consensus

Probab=92.61  E-value=0.0049  Score=55.01  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-C-CccHHHHHHhHHHHHHHHhhCCC
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-N-GKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~-p~~r~~kieNv~~al~flk~~gi   98 (104)
                      +|.-++-..+|.|+-.+. ..+..+.+|..|+.||.+|+.++++++.....+.. + |.  +|+.+|++.|+.+...+++
T Consensus        22 e~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~--~q~~~~v~~a~~~ft~d~r   99 (1113)
T KOG0518|consen   22 EVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG--IQGLHNVREALNKFTVDNR   99 (1113)
T ss_pred             eeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC--ccCcchhhhhhhhhhhccc
Confidence            355666666666666655 66788899999999999999999999998777644 3 44  8999999999999888764


Q ss_pred             CC
Q psy10625         99 ER  100 (104)
Q Consensus        99 ~~  100 (104)
                      ..
T Consensus       100 ~~  101 (1113)
T KOG0518|consen  100 KE  101 (1113)
T ss_pred             ee
Confidence            43

>KOG2996|consensus

Probab=90.27  E-value=0.49  Score=40.89  Aligned_cols=53  Identities=25%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCc-cHHHHHHhHHHHHHHHhh
Q psy10625         43 MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGK-MRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        43 ~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~-~r~~kieNv~~al~flk~   95 (104)
                      ..|-||...|+||+.|++|+.-|..-.+.  ..+ +|. +.|-++.|++.-+.|+.+
T Consensus        28 a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~   84 (865)
T KOG2996|consen   28 AQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE   84 (865)
T ss_pred             chHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence            46889999999999999999999988775  234 676 478899999998888775

>KOG0532|consensus

Probab=84.34  E-value=2.5  Score=36.63  Aligned_cols=66  Identities=18%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             HHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-----CCcc-HHHHHHhHHHHHHHHhhCCCC
Q psy10625         33 NQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-----NGKM-RVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        33 ~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-----~p~~-r~~kieNv~~al~flk~~gi~   99 (104)
                      +-+-..|+...++ ||-..|.||++|++|..-+-...|+..+     -|++ ...+--||..-|+++..-||.
T Consensus       583 k~iEtRLk~sLp~-Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVp  654 (722)
T KOG0532|consen  583 KLIETRLKVSLPE-DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVP  654 (722)
T ss_pred             HHHHHHhcccCch-hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCC
Confidence            3444555655555 9999999999999999999998876432     3443 558889999999999888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		4e-10
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		7e-10
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		1e-09
3lue_K	109	Model Of Alpha-Actinin Ch1 Bound To F-Actin Length		2e-08
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		2e-08
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		2e-08
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		9e-05
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		1e-04
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		2e-04
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		2e-04

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          + K +     SH  +A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ N
Sbjct: 8  QRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISN 67
Query: 86 VNKSLAFLHTK 96
          VNK+L F+ +K
Sbjct: 68 VNKALDFIASK 78

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 37 SHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
          SH  +A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ NVNK+L F+ +
Sbjct: 19 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 78
Query: 96 K 96
          K
Sbjct: 79 K 79

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          + K +     SH  +A  ++E++  D  DG       E+ISGE+L KP  GKMRVHK+ N
Sbjct: 13 QRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINN 72
Query: 86 VNKSLAFLHTK 96
          VNK+L F+ +K
Sbjct: 73 VNKALDFIASK 83

>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin Length = 109

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          + K +     SH  +A  ++E++  D  +G       E+ISGE+L +P+ GKMR HK+ N
Sbjct: 6  QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 65
Query: 86 VNKSLAFLHTK 96
          VNK+L F+ +K
Sbjct: 66 VNKALDFIASK 76

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          + K +     SH  +A  ++E++  D  +G       E+ISGE+L +P+ GKMR HK+ N
Sbjct: 24 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 83
Query: 86 VNKSLAFLHTK 96
          VNK+L F+ +K
Sbjct: 84 VNKALDFIASK 94

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          + K +     SH  +A  ++E++  D  +G       E+ISGE+L +P+ GKMR HK+ N
Sbjct: 28 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 87
Query: 86 VNKSLAFLHTK 96
          VNK+L F+ +K
Sbjct: 88 VNKALDFIASK 98

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 31 YPNQIYSHFQARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSL 90
          + N  +S F  +  +E+LF DL DG       E ++G+KL K   G  RVH + NVNK+L
Sbjct: 24 WVNAQFSKF-GKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNVNKAL 81
Query: 91 AFLH 94
            L 
Sbjct: 82 RVLQ 85

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 26  FKSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVE 84
            + K +   +  H  +A+  + DL+ DL DG       E++SG+ L +   G+MR HK++
Sbjct: 73  VQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQ 131
Query: 85  NVNKSLAFL 93
           NV  +L +L
Sbjct: 132 NVQIALDYL 140

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 SKPYPNQIYSHFQARME--VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          +K     +  H++A  +  + DL+ DL DG       E++SG+ L +   G+MR HK++N
Sbjct: 21 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQN 79
Query: 86 VNKSLAFL 93
          V  +L +L
Sbjct: 80 VQIALDYL 87

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 SKPYPNQIYSHFQARME--VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
          +K     +  H++A  +  + DL+ DL DG       E++SG+ L +   G+MR HK++N
Sbjct: 18 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQN 76
Query: 86 VNKSLAFL 93
          V  +L +L
Sbjct: 77 VQIALDYL 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	3e-19
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	8e-17
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	1e-16
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	2e-16
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	7e-16
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	8e-16
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	5e-15
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	6e-15
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	2e-14
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-14
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	2e-13
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	2e-11
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	1e-10
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	5e-11

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
          SH +    ++E++  D  +G KL+ LLE+ISGE+L +P+ GKMR HK+ NVNK+L F+ +
Sbjct: 38 SHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIAS 97

Query: 96 K 96
          K
Sbjct: 98 K 98

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 71.5 bits (175), Expect = 8e-17
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKP--NNGKMRVHKVENVNKSLAFL 93
           H +     + +L  DL+DG +L+ LLE++S +++ +        R  ++ENV+ +L FL
Sbjct: 31 EHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFL 90

Query: 94 HTK 96
            +
Sbjct: 91 DRE 93

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 71.2 bits (174), Expect = 1e-16
 Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96
          +A+  + DL+ DL DG  L+ LLE++SG+ L +   G+MR HK++NV  +L +L  +
Sbjct: 32 EAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHR 87

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 71.3 bits (174), Expect = 2e-16
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 37  SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
            H       + DL+ DL DG  L+ LLE++SG+ L +   G+MR HK++NV  +L +L  
Sbjct: 84  KHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRH 142

Query: 96  K 96
           +
Sbjct: 143 R 143

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129

 Score = 66.8 bits (163), Expect = 7e-16
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 33 NQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLA 91
          N   +    +  + DL  D+ DG  L +++++++ EK+   N   K R   +EN++  L 
Sbjct: 28 NHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLN 87

Query: 92 FLHTK 96
          FL  K
Sbjct: 88 FLAAK 92

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 70.3 bits (171), Expect = 8e-16
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96
          +A  ++E++  D  DG KL+ LLE+ISGE+L KP  GKMRVHK+ NVNK+L F+ +K
Sbjct: 23 KAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASK 79

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 66.9 bits (163), Expect = 5e-15
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 37 SHFQAR--MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH 94
          + F       +E+LF DL DG++LL LLE ++G+KL K   G  RVH + NVNK+L  L 
Sbjct: 27 AQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQ 85

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 67.0 bits (163), Expect = 6e-15
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 37  SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKP--NNGKMRVHKVENVNKSLAFL 93
            H +     + +L  DL+DG +L+ LLE++S +K+ +        R  ++ENV+ +L FL
Sbjct: 58  EHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117

Query: 94  HTK 96
             +
Sbjct: 118 DRE 120

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 43  MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKM---RVHKVENVNKSLAFLHTK 96
              +DLF  + DG  L K++ +   + + +    K         EN+N +L      
Sbjct: 51  PNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAI 107

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 65.5 bits (159), Expect = 4e-14
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 36  YSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNN----GKMRVHKVENVNKSLA 91
            +       V ++F D+ +G  LL++L+ +S   +   +      KM   KVEN N+ + 
Sbjct: 285 INSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIK 344

Query: 92  FLHTKP 97
                 
Sbjct: 345 IGKQLK 350

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 63.2 bits (153), Expect = 2e-13
 Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 4/67 (5%)

Query: 34 QIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGK----MRVHKVENVNKS 89
           +            L+  + DG  L KL+ +     + +             + EN    
Sbjct: 25 FLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLC 84

Query: 90 LAFLHTK 96
          L      
Sbjct: 85 LNSAKAV 91

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 7/70 (10%)

Query: 34 QIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP-------NNGKMRVHKVENV 86
           + S      E  + F    DG  L KL+     + + +        N        +EN 
Sbjct: 30 DVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENN 89

Query: 87 NKSLAFLHTK 96
          N  +      
Sbjct: 90 NVVINSAKAM 99

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 55.5 bits (133), Expect = 1e-10
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 36  YSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--------KPNNGKMRVHKVENVN 87
            +       + D F +L DG  LL+  + I+   +            +  MR   VEN N
Sbjct: 294 LNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCN 353

Query: 88  KSLAFLHTK 96
            ++     +
Sbjct: 354 YAVDLGKNQ 362

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131

 Score = 54.1 bits (130), Expect = 5e-11
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVENVNKSLAFLHTK 96
          +  +EV +L    ADG  L+ L+ ++ G  +   +          KV NV+ +   +   
Sbjct: 37 KLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDG 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	99.93
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.91
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.9
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	99.89
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.86
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.86
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.86
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.83
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.83
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.8
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.76
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.74
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.62
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.61
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.58
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	99.01
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	98.95
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	98.95
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	98.93
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	98.87
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	98.8
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	98.8
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	98.65
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	98.6
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	98.51
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	98.25
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	98.24
2qjz_A	123	Microtubule-associated protein RP/EB family member	98.18
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	98.12
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	97.9
1wyl_A	116	NEDD9 interacting protein with calponin homology a	97.79
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	97.77
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	97.76
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	97.73
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	97.64
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	97.62
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	97.51
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	97.47
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	97.43
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	97.38
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	97.26
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	97.26
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	97.26
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	97.24
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	97.09
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	97.03
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	96.34
2r8u_A	268	Microtubule-associated protein RP/EB family member	96.01
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	96.0
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	95.91
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	95.59

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=99.93  E-value=7e-27  Score=161.21  Aligned_cols=90  Identities=22%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             cccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHH
Q psy10625          9 VEDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVE   84 (104)
Q Consensus         9 ~~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kie   84 (104)
                      +-+.++|.++   +|+.+|++|||+|+|+|| +.+.+|+||++||+||+.|+.|+|+|+|+++|  +++ +|++|+|++|
T Consensus         8 ~~~~l~~~~~---e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kie   84 (131)
T 2vzc_A            8 AFDTLFDHAP---DKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVL   84 (131)
T ss_dssp             HHHHHHHHCH---HHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHH
T ss_pred             HHHHHHhcch---HHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHH
Confidence            3345666664   357899999999999999 77889999999999999999999999999887  445 6999999999


Q ss_pred             hHHHHHHHHhhCCCCCC
Q psy10625         85 NVNKSLAFLHTKPGERR  101 (104)
Q Consensus        85 Nv~~al~flk~~gi~~~  101 (104)
                      ||+.||+|+++.|+++.
T Consensus        85 Nv~~aL~~lk~~gi~l~  101 (131)
T 2vzc_A           85 NVSFAFELMQDGGLEKP  101 (131)
T ss_dssp             HHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHcCCCcC
Confidence            99999999999999764

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.91  E-value=4.2e-25  Score=172.30  Aligned_cols=80  Identities=23%  Similarity=0.367  Sum_probs=74.8

Q ss_pred             hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC-CC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGK-PN-NGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~-~~-~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      +|+++|+||||+|||+|| +.+.+|+||++||+||++|++|+|+|+|+++++ +. +|++|+|+++||+.||+|+++.|+
T Consensus        13 ~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~   92 (347)
T 4b7l_A           13 PWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI   92 (347)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhcc
Confidence            499999999999999999 778899999999999999999999999999975 44 799999999999999999999998


Q ss_pred             CCC
Q psy10625         99 ERR  101 (104)
Q Consensus        99 ~~~  101 (104)
                      ++.
T Consensus        93 ~lv   95 (347)
T 4b7l_A           93 KLV   95 (347)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            864

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.90  E-value=1.3e-24  Score=165.21  Aligned_cols=79  Identities=27%  Similarity=0.414  Sum_probs=74.2

Q ss_pred             hhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcC-CCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         23 FLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKL-GKPN-NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l-~~~~-~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      |+.+|+||||+|||+|| +.+..|+||++||+||++|+.|+|+|+|.++ ++++ +|++|+|+++||+.||+|+++.|++
T Consensus        44 w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~  123 (272)
T 3hoc_A           44 WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIK  123 (272)
T ss_dssp             GGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999 7778999999999999999999999999999 6665 6899999999999999999999987


Q ss_pred             CC
Q psy10625        100 RR  101 (104)
Q Consensus       100 ~~  101 (104)
                      +.
T Consensus       124 lv  125 (272)
T 3hoc_A          124 LV  125 (272)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=8.6e-24  Score=144.69  Aligned_cols=81  Identities=23%  Similarity=0.313  Sum_probs=73.9

Q ss_pred             chhhhhhhhchHHHHHhhc-CCCC--chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhC
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-QARM--EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTK   96 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~~~~--~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~   96 (104)
                      .+|+..|+++||+|||++| +.+.  .|.||++||+||++|+.|+|+|++.++++++ +|++|+|++|||+.||+|+++.
T Consensus        13 ~~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~   92 (129)
T 2yrn_A           13 IHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAK   92 (129)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999 5544  5999999999999999999999999999877 6899999999999999999998


Q ss_pred             CCCCC
Q psy10625         97 PGERR  101 (104)
Q Consensus        97 gi~~~  101 (104)
                      |+++.
T Consensus        93 gv~~~   97 (129)
T 2yrn_A           93 GINIQ   97 (129)
T ss_dssp             TCCCT
T ss_pred             CCccc
Confidence            88753

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.86  E-value=1.8e-22  Score=155.05  Aligned_cols=80  Identities=31%  Similarity=0.537  Sum_probs=74.8

Q ss_pred             chhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      .+|+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.++++ .+|++|+|++|||+.||+|+++.|++
T Consensus        68 ~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~-~~~~~r~~kleNvn~aL~~lk~~gv~  146 (296)
T 3f7p_A           68 DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQVK  146 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc-cCCcChhhhhhhHHHHHHHHHHhCcc
Confidence            4699999999999999999 777889999999999999999999999999998 57899999999999999999999987


Q ss_pred             CC
Q psy10625        100 RR  101 (104)
Q Consensus       100 ~~  101 (104)
                      +.
T Consensus       147 lv  148 (296)
T 3f7p_A          147 LV  148 (296)
T ss_dssp             CT
T ss_pred             cc
Confidence            63

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.86  E-value=2.1e-22  Score=151.08  Aligned_cols=79  Identities=39%  Similarity=0.611  Sum_probs=75.1

Q ss_pred             hhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCCC
Q psy10625         23 FLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGERR  101 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~~  101 (104)
                      |+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.+++++++|++|+|++|||+.||+|+++.|+++.
T Consensus        24 ~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~lv  103 (254)
T 1wku_A           24 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLV  103 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             chHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCcc
Confidence            99999999999999999 77788999999999999999999999999999977899999999999999999999998753

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.86  E-value=3.7e-22  Score=148.82  Aligned_cols=80  Identities=24%  Similarity=0.370  Sum_probs=74.0

Q ss_pred             hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcC-CCCC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKL-GKPN-NGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l-~~~~-~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      .|+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.++ ++++ +|++|+|++|||+.||+|+++.|+
T Consensus        16 ~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~   95 (245)
T 2wa7_A           16 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI   95 (245)
T ss_dssp             GGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence            599999999999999999 6778899999999999999999999999999 5665 589999999999999999999998


Q ss_pred             CCC
Q psy10625         99 ERR  101 (104)
Q Consensus        99 ~~~  101 (104)
                      ++.
T Consensus        96 ~lv   98 (245)
T 2wa7_A           96 KLV   98 (245)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            753

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.83  E-value=3.7e-21  Score=143.05  Aligned_cols=80  Identities=31%  Similarity=0.537  Sum_probs=73.2

Q ss_pred             chhhhhhhhchHHHHHhhc-C-----CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHh
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-Q-----ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH   94 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~-----~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk   94 (104)
                      ++|+.+|+++||+|||++| +     .+..|+||++||+||++|++|+|+|+|.++++ .+|++|+|++||++.||+|++
T Consensus         7 ~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k   85 (245)
T 1sh5_A            7 DERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLR   85 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC-CCCcchHHHHHhHHHHHHHHH
Confidence            3599999999999999999 5     34689999999999999999999999999986 578899999999999999999


Q ss_pred             hCCCCCC
Q psy10625         95 TKPGERR  101 (104)
Q Consensus        95 ~~gi~~~  101 (104)
                      +.|+.+.
T Consensus        86 ~~g~~l~   92 (245)
T 1sh5_A           86 HRQVKLV   92 (245)
T ss_dssp             HTTCCCC
T ss_pred             HcCCccc
Confidence            9998763

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.83  E-value=5.7e-21  Score=142.35  Aligned_cols=82  Identities=34%  Similarity=0.543  Sum_probs=74.0

Q ss_pred             CcchhhhhhhhchHHHHHhhc-CCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhC
Q psy10625         19 GTFFFLFFKSKPYPNQIYSHF-QAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK   96 (104)
Q Consensus        19 ~~~~w~~~Q~ktft~WvN~~L-~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~   96 (104)
                      +..+|+.+|+++||+|||++| +.+ .+|+|+++||+||++|++|+|+|+|.++++ .+|++|+|++||++.||+|+++.
T Consensus         9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k~~   87 (246)
T 1dxx_A            9 DSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQNN   87 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-CCCccHHHHHHHHHHHHHHHHHc
Confidence            344599999999999999999 555 479999999999999999999999999986 46889999999999999999999


Q ss_pred             CCCCC
Q psy10625         97 PGERR  101 (104)
Q Consensus        97 gi~~~  101 (104)
                      |+++.
T Consensus        88 g~~l~   92 (246)
T 1dxx_A           88 NVDLV   92 (246)
T ss_dssp             TCCCT
T ss_pred             CCccc
Confidence            98763

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.80  E-value=1.7e-20  Score=157.10  Aligned_cols=79  Identities=43%  Similarity=0.638  Sum_probs=75.3

Q ss_pred             hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      .|+.+|+++||+|||++| +.+.+|+||++||+||++|+.|+|+|+|.+++++++|++|+|+++||+.||+|++..|+++
T Consensus         4 ~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~   83 (863)
T 1sjj_A            4 AWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKL   83 (863)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCcc
Confidence            499999999999999999 7778999999999999999999999999999998889999999999999999999999875

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.76  E-value=1.2e-18  Score=131.51  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             chhhhhhhhchHHHHHhhc-CCC---------CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCC-CccHHHHHHhHH
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-QAR---------MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNN-GKMRVHKVENVN   87 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~~~---------~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~-p~~r~~kieNv~   87 (104)
                      ..|...|+++||+|||++| +.+         ..|.|+++||+||++|++|+|.|++.+++  ++++ |.+++|++|||+
T Consensus        19 ~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~   98 (275)
T 1aoa_A           19 HSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLN   98 (275)
T ss_dssp             --CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHH
Confidence            4599999999999999999 421         35899999999999999999999999987  4554 456999999999


Q ss_pred             HHHHHHhhCCCCCC
Q psy10625         88 KSLAFLHTKPGERR  101 (104)
Q Consensus        88 ~al~flk~~gi~~~  101 (104)
                      .||+|+++.|+++.
T Consensus        99 ~aL~~~k~~g~~l~  112 (275)
T 1aoa_A           99 LALNSASAIGCHVV  112 (275)
T ss_dssp             HHHHHHHHTTCCCT
T ss_pred             HHHHHHHHcCCccc
Confidence            99999999998764

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.74  E-value=1.8e-18  Score=139.78  Aligned_cols=79  Identities=23%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             hhhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCC--ccHHHHHHhHHHHHHHHhhCC
Q psy10625         22 FFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNG--KMRVHKVENVNKSLAFLHTKP   97 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p--~~r~~kieNv~~al~flk~~g   97 (104)
                      .|+.+|+||||+|||+++ .+..|+||++||+||++|++|+|+|+|++++  +.++|  ++|+|+++||+.||+|+++.|
T Consensus       272 ~~~~~q~ktf~~WiN~~~-~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~  350 (506)
T 1pxy_A          272 VETCRDERCYRLWINSLG-IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK  350 (506)
T ss_dssp             CHHHHHHHHHHHHHTTTT-CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhcC-CCCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHHHcC
Confidence            499999999999999987 3478999999999999999999999999886  23343  789999999999999999999


Q ss_pred             CCCC
Q psy10625         98 GERR  101 (104)
Q Consensus        98 i~~~  101 (104)
                      +.+.
T Consensus       351 v~l~  354 (506)
T 1pxy_A          351 FSLV  354 (506)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            8763

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.62  E-value=4.6e-16  Score=125.98  Aligned_cols=75  Identities=21%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             hhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHH-HcCCcC--CCCCC-C-----ccHHHHHHhHHHHHHHHhh
Q psy10625         25 FFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEI-ISGEKL--GKPNN-G-----KMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~-Ls~~~l--~~~~~-p-----~~r~~kieNv~~al~flk~   95 (104)
                      ++|+++||+|||++. .+..|+||++||+||++|++|+|. ++|. +  +++++ |     ++|+|++|||+.||+|+++
T Consensus       284 ~~q~k~f~~WiN~~~-~~~~v~~l~~DL~DG~~L~~Lle~l~~g~-v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~  361 (513)
T 1rt8_A          284 EREARVFTLWLNSLD-VTPSIHDFFNNLRDGLILLQAYDKITPNT-VNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN  361 (513)
T ss_dssp             HHHHHHHHHHHHHTT-CSSCCSCHHHHTTTSHHHHHHHHHHSTTC-CCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCCccCHHHHHhhHHHHHHHHHHhCCCC-cchhhhcCCcccccccchHHHHHHHHHHHHHHHH
Confidence            589999999999974 456799999999999999999995 4553 3  23332 3     6899999999999999999


Q ss_pred             CCCCCC
Q psy10625         96 KPGERR  101 (104)
Q Consensus        96 ~gi~~~  101 (104)
                      .|+++.
T Consensus       362 ~gv~lv  367 (513)
T 1rt8_A          362 QGFSLV  367 (513)
T ss_dssp             TTCCCT
T ss_pred             cCceee
Confidence            999864

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.61  E-value=6.1e-16  Score=125.24  Aligned_cols=79  Identities=18%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             cchhhhhhhhchHHHHHhhc-CCC---------CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-----CCccHHHH
Q psy10625         20 TFFFLFFKSKPYPNQIYSHF-QAR---------MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-----NGKMRVHK   82 (104)
Q Consensus        20 ~~~w~~~Q~ktft~WvN~~L-~~~---------~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-----~p~~r~~k   82 (104)
                      +..|...|+++||+|||++| +.+         ..|.||++||+||++|++|+|+|++.+++  +.+     +|.+|+|+
T Consensus         6 ~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~   85 (513)
T 1rt8_A            6 MHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKC   85 (513)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHH
Confidence            34699999999999999999 431         25789999999999999999999998774  222     47899999


Q ss_pred             HHhHHHHHHHHhhCCC
Q psy10625         83 VENVNKSLAFLHTKPG   98 (104)
Q Consensus        83 ieNv~~al~flk~~gi   98 (104)
                      +||++.||+|++..|+
T Consensus        86 ~eNi~~~L~~~k~~g~  101 (513)
T 1rt8_A           86 IENNNVVINSAKAMGG  101 (513)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999999888

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.58  E-value=1.9e-15  Score=122.13  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             hhhhhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCC-Cc-cHHHHHHhHH
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNN-GK-MRVHKVENVN   87 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~-p~-~r~~kieNv~   87 (104)
                      +|.+.|+++|++|||++| +.         .+.|.||++||+||++|++|++.|++.+++  +.++ |. ++++++||++
T Consensus         3 ~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~   82 (506)
T 1pxy_A            3 PGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHT   82 (506)
T ss_dssp             ----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHH
Confidence            578999999999999999 43         134889999999999999999999999984  4443 43 5899999999


Q ss_pred             HHHHHHhhCCCCCC
Q psy10625         88 KSLAFLHTKPGERR  101 (104)
Q Consensus        88 ~al~flk~~gi~~~  101 (104)
                      .||+|++..|+++.
T Consensus        83 ~~L~~~k~~g~~~~   96 (506)
T 1pxy_A           83 LCLNSAKAVGCSVV   96 (506)
T ss_dssp             HHHHHHHHTTCCCT
T ss_pred             HHHHHHHHhCCCcC
Confidence            99999999998764

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=99.01  E-value=7.1e-10  Score=75.73  Aligned_cols=76  Identities=9%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             hhhhhchHHHHHhhc-CC--CCchhhHH-hhhhhHHHHHHHHHHHcCCcCCCC--CCCc-cHHHHHHhHHHHHHHHhhCC
Q psy10625         25 FFKSKPYPNQIYSHF-QA--RMEVEDLF-IDLADGKKLLKLLEIISGEKLGKP--NNGK-MRVHKVENVNKSLAFLHTKP   97 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~~--~~~V~dl~-~Dl~DG~~Li~LLe~Ls~~~l~~~--~~p~-~r~~kieNv~~al~flk~~g   97 (104)
                      .+..+++.+|+|.++ +.  ...|+|+. ++++||+.++.|++.+.+..+..-  .+|. .+.++.+|+++||++.+.-|
T Consensus         6 ~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG   85 (124)
T 1wjo_A            6 SGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIG   85 (124)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            567889999999999 43  35799999 999999999999999999988642  2566 68999999999999999988


Q ss_pred             CCC
Q psy10625         98 GER  100 (104)
Q Consensus        98 i~~  100 (104)
                      +.+
T Consensus        86 ~~~   88 (124)
T 1wjo_A           86 ARV   88 (124)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            754

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.95  E-value=2.2e-09  Score=73.88  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             hhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      +....+..+..||++.++... -.++++.|+||++|++|+..+....+++++.+.+.+++++|++..|++++.-|+.
T Consensus        14 y~~~~~~e~~~WIe~~l~~~~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~   89 (136)
T 1wyp_A           14 YDHQREQELREWIEGVTGRRI-GNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVK   89 (136)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCC-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCC-cHHHHHHHccHHhHHHHHHhhCCCCcccccccccchHHHHHHHHHHHHHHHcCCC
Confidence            444556789999999885443 3689999999999999999999999988877788899999999999999987775

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=98.95  E-value=1e-09  Score=72.66  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             hhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         28 SKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      ++.+..|+++.++... -.++++.|+||++|++|+..+.+..+++++.+.+.+++++|++..|++++.-|+.
T Consensus         5 e~e~~~WIe~~l~~~~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~   75 (108)
T 1h67_A            5 ERQLRVWIEGATGRRI-GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVK   75 (108)
T ss_dssp             SHHHHHHHHHHHSCCC-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCC
Confidence            4569999999885443 3689999999999999999999999998777788899999999999999987775

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.93  E-value=2.6e-09  Score=74.35  Aligned_cols=76  Identities=17%  Similarity=0.116  Sum_probs=65.6

Q ss_pred             hhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      +....+..+..||+..++... -.++.+.|+||++|++|+..|....+++++.+.+.+++++|++..|++++.-|+.
T Consensus        14 y~~~~~~e~~~WIe~~l~~~i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~~~f~~~eNI~~FL~a~~~~Gv~   89 (146)
T 1wyn_A           14 YDPQKEAELRTWIEGLTGLSI-GPDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMN   89 (146)
T ss_dssp             CCTTHHHHHHHHHHHHHCCCC-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHcCCC
Confidence            344456789999999885544 3689999999999999999999999988877888999999999999999987776

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=6.6e-09  Score=72.86  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             hhhhhhhchHHHHHhhcCCCCc-----hhhHHhhhhhHHHHHHHHHHHcC---CcCCCCCCCccHHHHHHhHHHHHHHHh
Q psy10625         23 FLFFKSKPYPNQIYSHFQARME-----VEDLFIDLADGKKLLKLLEIISG---EKLGKPNNGKMRVHKVENVNKSLAFLH   94 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~~-----V~dl~~Dl~DG~~Li~LLe~Ls~---~~l~~~~~p~~r~~kieNv~~al~flk   94 (104)
                      +....+..+..||+..|+...+     -.++.+.|+||++|++|+..|..   .++++++.+++.+++++|++.-|++++
T Consensus        14 y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~~~F~~~eNI~~FL~ac~   93 (155)
T 1wym_A           14 YDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAE   93 (155)
T ss_dssp             CCHHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCCCccccHHHHHHHHHHHHH
Confidence            3444566799999998854433     26999999999999999999999   899988878899999999999999999


Q ss_pred             hCCCCC
Q psy10625         95 TKPGER  100 (104)
Q Consensus        95 ~~gi~~  100 (104)
                      .-|+.-
T Consensus        94 ~~Gv~~   99 (155)
T 1wym_A           94 RYGINT   99 (155)
T ss_dssp             HHTCCT
T ss_pred             HcCCCc
Confidence            977753

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-08  Score=68.22  Aligned_cols=71  Identities=20%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             hchHHHHHhhcC--C-C----CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         29 KPYPNQIYSHFQ--A-R----MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        29 ktft~WvN~~L~--~-~----~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      +.+..|+++.+.  . .    .....+++.|+||++|++|+..+....+++++ .|++.+++++|++..|++++.-|+.
T Consensus         9 ~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~~   87 (121)
T 1wyr_A            9 EQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVE   87 (121)
T ss_dssp             HHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence            348899999742  1 1    12334789999999999999999999999865 6888999999999999999987763

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=98.80  E-value=1e-08  Score=71.15  Aligned_cols=77  Identities=14%  Similarity=-0.010  Sum_probs=64.4

Q ss_pred             hhhhhhhchHHHHHhhcCCCC-----chhhHHhhhhhHHHHHHHHHHHcC---CcCC-CCCCCccHHHHHHhHHHHHHHH
Q psy10625         23 FLFFKSKPYPNQIYSHFQARM-----EVEDLFIDLADGKKLLKLLEIISG---EKLG-KPNNGKMRVHKVENVNKSLAFL   93 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~-----~V~dl~~Dl~DG~~Li~LLe~Ls~---~~l~-~~~~p~~r~~kieNv~~al~fl   93 (104)
                      +....+..+..||+..|+...     .-.++.+.|+||++|++|+..|..   ..++ +++.+++.+++++|++.-|+++
T Consensus         6 y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac   85 (144)
T 1ujo_A            6 SGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAA   85 (144)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHH
Confidence            344456679999999885432     247999999999999999999998   7788 7677788999999999999999


Q ss_pred             hhCCCC
Q psy10625         94 HTKPGE   99 (104)
Q Consensus        94 k~~gi~   99 (104)
                      +.-|+.
T Consensus        86 ~~~Gv~   91 (144)
T 1ujo_A           86 EDYGVI   91 (144)
T ss_dssp             HHHTCC
T ss_pred             HHcCcC
Confidence            997775

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.65  E-value=4.1e-08  Score=71.63  Aligned_cols=73  Identities=19%  Similarity=0.200  Sum_probs=62.6

Q ss_pred             hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      ...+..|++..++... ...|+++.|+||++||+|+..|....+++++ .+++.+++++|++..|++++.-|+..
T Consensus        57 ~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~  131 (203)
T 1p5s_A           57 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPE  131 (203)
T ss_dssp             HHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCc
Confidence            4668899999875443 4679999999999999999999999998864 56778999999999999999988753

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=98.60  E-value=2.4e-07  Score=63.06  Aligned_cols=71  Identities=15%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             hhchHHHHHhh--cCC-C---CchhhH-HhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCC
Q psy10625         28 SKPYPNQIYSH--FQA-R---MEVEDL-FIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPG   98 (104)
Q Consensus        28 ~ktft~WvN~~--L~~-~---~~V~dl-~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi   98 (104)
                      +..+..|++..  |.. .   ..-.++ .+.|+||++|++|+..+.+..+++++ .|++.+++++|++..|++++. -|+
T Consensus        14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~   93 (126)
T 2l3g_A           14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL   93 (126)
T ss_dssp             HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence            34488999997  422 1   234566 59999999999999999999999875 688899999999999999998 665

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.51  E-value=2.2e-07  Score=65.25  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             hchHHHHHhhcCCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCCCCCC-CccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         29 KPYPNQIYSHFQARME-VEDLFIDLADGKKLLKLLEIISGEKLGKPNN-GKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        29 ktft~WvN~~L~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~-p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      .....|++..++...+ -.|+.+.|+||++|++|+..+....+++++. +.+.+++++|++.-|++++.-|+.
T Consensus        14 ~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~   86 (159)
T 1p2x_A           14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLP   86 (159)
T ss_dssp             HHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCC
Confidence            5588999998855433 4699999999999999999999999988764 678899999999999999998875

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=98.25  E-value=8.2e-07  Score=64.01  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             hhhhhhhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC--------CCccHHHHHHhHHHHHH
Q psy10625         23 FLFFKSKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN--------NGKMRVHKVENVNKSLA   91 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~--------~p~~r~~kieNv~~al~   91 (104)
                      +...+ ..+..|++..++... ...++.+.|+||++|++|+..|....++  +..        .+++.+++++|++.-|+
T Consensus        23 y~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~  101 (190)
T 2rr8_A           23 YLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLN  101 (190)
T ss_dssp             HHHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHH
T ss_pred             hcHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHH
Confidence            34444 779999999885543 3579999999999999999999988774  321        24567899999999999


Q ss_pred             HHhhCCCCC
Q psy10625         92 FLHTKPGER  100 (104)
Q Consensus        92 flk~~gi~~  100 (104)
                      +++.-|+.-
T Consensus       102 ac~~~Gvp~  110 (190)
T 2rr8_A          102 AMDEIGLPK  110 (190)
T ss_dssp             GGGGTTCCS
T ss_pred             HHHHcCCCc
Confidence            999988753

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=98.24  E-value=7.6e-07  Score=64.49  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             chHHHHHhhcCCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC--------CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         30 PYPNQIYSHFQARME-VEDLFIDLADGKKLLKLLEIISGEKLG--KPN--------NGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        30 tft~WvN~~L~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~--------~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      ....||++.++...+ ..++.+.|+||++|++|+..|....+|  +..        .+++.+++++||+.-|++++.-|+
T Consensus        51 e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gv  130 (193)
T 3i6x_A           51 EAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGL  130 (193)
T ss_dssp             HHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCC
Confidence            567899998865433 469999999999999999999998875  331        245678999999999999998877


Q ss_pred             C
Q psy10625         99 E   99 (104)
Q Consensus        99 ~   99 (104)
                      +
T Consensus       131 p  131 (193)
T 3i6x_A          131 P  131 (193)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=98.18  E-value=4.9e-06  Score=56.54  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      ++....|||.-|+.+. .|    ++++||..+++|+..|.+..+|  |.. .+++....++|+..-.+.++..||+-
T Consensus         7 r~ElL~WIN~~L~~~~~ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k   79 (123)
T 2qjz_A            7 RHDMLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   79 (123)
T ss_dssp             HHHHHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCCCchH----HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            3457899999886553 33    6899999999999999988888  766 79999999999999999999988863

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=6.9e-06  Score=58.05  Aligned_cols=72  Identities=8%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             hhhhhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         25 FFKSKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      ..+++....|||.-|+.+. .|    ++++||..+|+|+..|....++  |.. .+++.+..++|+..-.+.++..||+-
T Consensus        21 ~~sr~ElL~WIN~~L~~~~~ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k   96 (159)
T 1wyo_A           21 NLSRHDMLAWVNDSLHLNYTKI----EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK   96 (159)
T ss_dssp             CCCHHHHHHHHHHHSCCCCSSG----GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             chhHHHHHHHHHHHHCCCCchh----hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            4466779999999886553 23    6899999999999999988888  766 78999999999999999999988863

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=97.90  E-value=7.4e-06  Score=61.32  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             hhchHHHHHhhc-CCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCCC------CC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         28 SKPYPNQIYSHF-QARME-VEDLFIDLADGKKLLKLLEIISGEKLGK------PN-NGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        28 ~ktft~WvN~~L-~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~------~~-~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      ++...+|+|.|+ +.+.. |+|+-++++||..++.|+..+.+..++.      +. .+-..-...+|+..||+..++-||
T Consensus       170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi  249 (275)
T 1aoa_A          170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGC  249 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence            667899999999 44433 9999999999999999999999985431      12 232334678999999999987776


Q ss_pred             C
Q psy10625         99 E   99 (104)
Q Consensus        99 ~   99 (104)
                      .
T Consensus       250 ~  250 (275)
T 1aoa_A          250 R  250 (275)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=97.79  E-value=2.6e-05  Score=51.93  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=56.2

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      ++...+|+|.++ + .+..|+|+-++++||..++.|+..+..+.++. . .-..-...+|+..||+..++ -||.
T Consensus         9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~-~-~l~~~~~~~n~~~af~~Ae~~lgi~   81 (116)
T 1wyl_A            9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEP-S-ELQGLGALEATAWALKVAENELGIT   81 (116)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCC-S-SGGGCCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCH-H-HhccCCHHHHHHHHHHHHHHHcCCc
Confidence            566889999998 4 35779999999999999999999999887753 2 11123578999999999986 6774

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=1.6e-05  Score=53.25  Aligned_cols=69  Identities=10%  Similarity=0.040  Sum_probs=54.9

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      ++...+|+|.++ + .+..|+|+.++++||..++.|+..+..+.++.-. .+.   ..++|+..||+..++-||.
T Consensus        11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~---~~~~n~~~af~~a~~LGi~   82 (119)
T 2d89_A           11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ---DIKENNKKAYDGFASIGIS   82 (119)
T ss_dssp             HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTT---CSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhccc---CHHHHHHHHHHHHHHhCCC
Confidence            566889999999 4 3567999999999999999999999988775311 333   4578999999987766664

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=97.76  E-value=4.2e-05  Score=51.33  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      ++...+|+|.++ + .+..|+|+.++++||..++.|+..+..+.++.-. .+.   ...+|+..||+...+ -||.
T Consensus        11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi~   83 (121)
T 2d88_A           11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQ---NVEKNNQLAFDIAEKELGIS   83 (121)
T ss_dssp             SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCTT---CHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCcc---CHHHHHHHHHHHHHHHcCCC
Confidence            455889999999 4 3578999999999999999999999988775311 333   468999999999874 7774

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=97.73  E-value=2.9e-05  Score=52.68  Aligned_cols=68  Identities=9%  Similarity=0.097  Sum_probs=55.1

Q ss_pred             hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCC
Q psy10625         28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPG   98 (104)
Q Consensus        28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi   98 (104)
                      ++...+|+|.++ +- +..|+|+-++++||..++.|+..+..+.++.-. .+.   ..++|+..||+..++ -||
T Consensus         9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi   80 (128)
T 2d87_A            9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQ---NRRQNFEVAFSSAETHADC   80 (128)
T ss_dssp             HHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCSS---CHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCcc---CHHHHHHHHHHHHHHcCCC
Confidence            566889999999 43 578999999999999999999999988775311 333   567899999999887 365

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=97.64  E-value=4.6e-05  Score=56.24  Aligned_cols=71  Identities=11%  Similarity=0.041  Sum_probs=57.0

Q ss_pred             hhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         27 KSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        27 Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      -++...+|+|.++. +..|+|+-++++||..++.|+..+.+..++.+.. -..-..++|+..||+..++ -||.
T Consensus       144 ~~~~LL~W~~~~~~-~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~-l~~~~~~~n~~~a~~~A~~~lGi~  215 (245)
T 2wa7_A          144 PKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES-WDPQKPVDNAREAVQQADDWLGVP  215 (245)
T ss_dssp             HHHHHHHHHHHHST-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG-SCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhCC-CCCCCCCcccchhhHHHHHHHHHHCccccccccc-cCcccHHHHHHHHHHHHHHhCCCC
Confidence            46789999999994 3569999999999999999999999887754331 1123578999999999987 7775

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=97.62  E-value=3.8e-05  Score=50.64  Aligned_cols=69  Identities=6%  Similarity=0.009  Sum_probs=55.0

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~   99 (104)
                      ++..-.|+|.++ + .+..|+|+-++++||..++.|+..+.++.++.-. .+.   ...+|++.||+... .-||.
T Consensus         5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi~   77 (109)
T 1bkr_A            5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKS---NAHYNLQNAFNLAEQHLGLT   77 (109)
T ss_dssp             HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcC---CHHHHHHHHHHHHHHHcCCC
Confidence            566889999998 4 3568999999999999999999999988775311 333   46799999999987 45664

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=97.51  E-value=5.3e-05  Score=51.28  Aligned_cols=69  Identities=7%  Similarity=-0.022  Sum_probs=55.2

Q ss_pred             hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625         28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~   99 (104)
                      ++....|+|.++ +- +..|+|+-++++||..++.|+..+..+.++.-. .+.   ...+|++.||+..+ .-||.
T Consensus         9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~Lgi~   81 (127)
T 1wyq_A            9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC---NAHYNLQNAFNLAEKELGLT   81 (127)
T ss_dssp             THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSS---CCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcC---CHHHHHHHHHHHHHHHcCCC
Confidence            566889999998 43 568999999999999999999999988775311 333   35789999999997 45664

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=97.47  E-value=7.9e-05  Score=56.23  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      .-++.+.+|+|.+++ +..|+|+-++++||..++.|+..+.+..++.+.  .+.   ...+|+..||+..++ -||.
T Consensus       170 s~k~~LL~W~n~~~~-~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~~~---~~~~n~~~Af~~Ae~~lGi~  242 (272)
T 3hoc_A          170 TPKQRLLGWIQNKLP-QLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDAS---KPVTNAREAMQQADDWLGIP  242 (272)
T ss_dssp             CHHHHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHhhCC-CCCCCChhhcccchHHHHHHHHHhCcccccchhhcCcc---CHHHHHHHHHHHHHHhCCCC
Confidence            346789999999984 467999999999999999999999998875433  333   578999999999987 6664

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=97.43  E-value=3.5e-05  Score=51.49  Aligned_cols=70  Identities=10%  Similarity=0.094  Sum_probs=54.4

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH-TKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk-~~gi~   99 (104)
                      ++..-.|+|.++ + .+..|+|+.++++||..++.|+..+..+.++. . .-..-...+|+..||+... .-||.
T Consensus        10 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~-~-~l~~~~~~~n~~~af~~Ae~~lgi~   82 (118)
T 1bhd_A           10 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW-D-KVVKMSPIERLEHAFSKAQTYLGIE   82 (118)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH-H-HHHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCH-H-HhCcCCHHHHHHHHHHHHHHHcCCC
Confidence            567889999999 4 35689999999999999999999998887652 1 1011245889999999886 56664

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=97.38  E-value=3.9e-05  Score=56.40  Aligned_cols=71  Identities=8%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      .++...+|+|.++ + .+..|+|+.++++||..++.|+..+.+..++. . .-..-...+|+..||+..++ -||.
T Consensus       134 ~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~-~-~l~~~~~~~n~~~a~~~a~~~lGi~  207 (245)
T 1sh5_A          134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDM-N-KVYRQTNLENLDQAFSVAERDLGVT  207 (245)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCH-H-HHHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCH-H-HcccCCHHHHHHHHHHHHHHhCCCC
Confidence            4567899999999 4 35789999999999999999999888776652 1 00112468999999999986 6764

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=97.26  E-value=0.00025  Score=54.96  Aligned_cols=70  Identities=11%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      .-++.+.+|+|.++. +..|+|+.++++||..++.|+..+....++-+.  .+.   ..++|+..||+...+ -||.
T Consensus       140 ~~k~~LL~W~~~~~~-~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~~---~~~~n~~~Af~~Ae~~lGip  212 (347)
T 4b7l_A          140 TPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQ---KPVDNAREAMQQADDWLGVP  212 (347)
T ss_dssp             CHHHHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHhhCC-CcccCCCCCCccchHHHHHHHHHhCCccccchhhcCcC---CHHHHHHHHHHHHHHhcCCC
Confidence            346779999999983 245999999999999999999999988776433  343   457899999999876 4664

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=97.26  E-value=7e-05  Score=55.21  Aligned_cols=69  Identities=10%  Similarity=0.065  Sum_probs=54.9

Q ss_pred             hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-C-CccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625         28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-N-GKMRVHKVENVNKSLAFLH-TKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~-p~~r~~kieNv~~al~flk-~~gi~   99 (104)
                      ++...+|+|.++ +- +..|+|+-++++||..++.|+..+.+..++.-. . +.   ...+|+..||+..+ .-||.
T Consensus       137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---~~~~n~~~a~~~A~~~lGi~  210 (246)
T 1dxx_A          137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---SATQRLEHAFNIARYQLGIE  210 (246)
T ss_dssp             HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---CHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhcccC---CHHHHHHHHHHHHHHhCCCC
Confidence            567899999999 43 578999999999999999999998887665211 1 22   35789999999997 67775

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=97.26  E-value=0.00013  Score=55.70  Aligned_cols=70  Identities=6%  Similarity=0.041  Sum_probs=55.6

Q ss_pred             hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625         27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE   99 (104)
Q Consensus        27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~   99 (104)
                      .++.+.+|+|.++ + .+..|+|+.++++||..++.|+..+.+..++.-. .+.   ...+|+..||+... .-||.
T Consensus       190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~---~~~~N~~~Af~~Ae~~LGi~  263 (296)
T 3f7p_A          190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ---TNLENLDQAFSVAERDLGVT  263 (296)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS---CHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc---cHHHHHHHHHHHHHHhCCCC
Confidence            4667899999999 3 3578999999999999999999999887765211 333   45789999999994 56764

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=97.24  E-value=0.00025  Score=52.65  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      .++....|+|.++ + .+..|+|+-++++||..++.|+..+.+..++.-. .+.   ...+|+..||+...+ -||.
T Consensus       141 ~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~~---~~~~n~~~a~~~A~~~lGi~  214 (254)
T 1wku_A          141 AKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKD---DPIGNLNTAFEVAEKYLDIP  214 (254)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCTT---CHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccCcC---CHHHHHHHHHHHHHHHcCCC
Confidence            3567899999988 3 3567999999999999999999999988775311 333   468999999999986 6775

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=97.09  E-value=0.0012  Score=53.63  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             hHHHHHhhc--CC-------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCcc-HHHHHHhHHHHHHHH-hhC
Q psy10625         31 YPNQIYSHF--QA-------RMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKM-RVHKVENVNKSLAFL-HTK   96 (104)
Q Consensus        31 ft~WvN~~L--~~-------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~-r~~kieNv~~al~fl-k~~   96 (104)
                      -..|++.-.  ..       ..++.|+...|+||++|+.|+..|....++  +.+ .|++ .+++++||+.=|+++ +.-
T Consensus        10 ~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~   89 (587)
T 3ky9_A           10 CTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKF   89 (587)
T ss_dssp             HHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHc
Confidence            457998632  21       235899999999999999999999998885  344 4665 599999999999999 666


Q ss_pred             CCC
Q psy10625         97 PGE   99 (104)
Q Consensus        97 gi~   99 (104)
                      |++
T Consensus        90 g~~   92 (587)
T 3ky9_A           90 GLK   92 (587)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.03  E-value=0.002  Score=43.77  Aligned_cols=77  Identities=9%  Similarity=-0.055  Sum_probs=63.1

Q ss_pred             hhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCCccHHHHHHhHHHH-HHHHhhCCCCCC
Q psy10625         25 FFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNGKMRVHKVENVNKS-LAFLHTKPGERR  101 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p~~r~~kieNv~~a-l~flk~~gi~~~  101 (104)
                      +-+.+..-+|+++ +..+.++.++..||+||+.+++++..+-++.+.  .|..+.+...|+.|=+.- .++++.-|+.+.
T Consensus        14 ~ee~~el~~WL~~-l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~l~   92 (127)
T 2ee7_A           14 EEALHQLYLWVDN-IPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSVP   92 (127)
T ss_dssp             HHHHHHHHHHHHH-SCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCCCC
T ss_pred             HHHHHHHHHHHHc-CCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCCCC
Confidence            3456668899996 876677999999999999999999999988775  355677888999999887 478888888765


Q ss_pred             C
Q psy10625        102 P  102 (104)
Q Consensus       102 ~  102 (104)
                      +
T Consensus        93 ~   93 (127)
T 2ee7_A           93 D   93 (127)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.016  Score=39.38  Aligned_cols=67  Identities=10%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      +..+..|+|+-|+.+. .    .+++++|...+++++.+-|. +|  |.. .++.....+.|....=+.+...+|+
T Consensus        12 R~elL~WiN~~L~~n~~k----iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~   82 (127)
T 2qjx_A           12 RTELLTWLNGLLNLNYKK----IEECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE   82 (127)
T ss_dssp             HHHHHHHHHHHHTCCCCS----GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCccH----HHHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            4558899999886653 3    45568999999999999975 55  434 6888999999999888888888876

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=96.01  E-value=0.024  Score=42.82  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             hhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         28 SKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        28 ~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      +.....|+|.-|+.+..   -.+++++|...|+|++.|-...++  |.. +++.....++|....=+.++..||+-
T Consensus        17 R~elL~WiN~~L~~~~~---kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k   89 (268)
T 2r8u_A           17 RHDMLAWINESLQLNLT---KIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   89 (268)
T ss_dssp             HHHHHHHHHHHHTCCCC---CGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhcCCcc---hHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            45588999998865531   146789999999999999987776  444 78999999999988888888888763

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=96.00  E-value=0.023  Score=39.40  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             hchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         29 KPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        29 ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      .....|+|+-|+.+..  . .+++++|...|+|++.|-|. ++  |.. .++.....++|....=+.++..||+-
T Consensus         9 ~eLL~WiN~~L~~n~t--k-IE~l~sGAaYCQlmD~lfg~-i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k   79 (145)
T 4abo_I            9 QELLAWINQVTSLGLT--R-IEDCGKGYAMIQIFDSIYQD-IPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDK   79 (145)
T ss_dssp             HHHHHHHHHHHTCCCC--S-GGGGGGSHHHHHHHHHHHCC-SCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHcCCCcc--h-HHHccccHHHHHHHHHHhcC-cchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4478999997765531  1 45789999999999999954 54  444 68899999999988888888877753

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=95.91  E-value=0.0012  Score=55.26  Aligned_cols=69  Identities=10%  Similarity=0.087  Sum_probs=54.8

Q ss_pred             hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      ++.+..|+|.++ + .+..|+|+-++++||..++.|+..+.+..++... .|.   ..++|+..||+.... -||.
T Consensus       123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~---~~~~n~~~a~~~a~~~lg~~  195 (863)
T 1sjj_A          123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKD---DPLTNLNTAFDVAEKYLDIP  195 (863)
T ss_dssp             TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSC---CCGGGCTHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence            567999999988 3 3567999999999999999999999988776321 232   357899999998876 5664

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1

Probab=95.59  E-value=0.025  Score=39.56  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC-----CCC-CC-ccHHHHHHhHHHHHHHHhh
Q psy10625         26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG-----KPN-NG-KMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-----~~~-~p-~~r~~kieNv~~al~flk~   95 (104)
                      -...++..|+|+ +....++.+ ++||.||+.|.++|..+.++.+.     +.. .+ ....-++.|+...++-+.+
T Consensus         9 ~~~~aLl~W~~t-f~~~~~~~~-~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~   83 (164)
T 1wix_A            9 PLCDSLIIWLQT-FKTASPCQD-VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             HHHHHHHHHHTT-CCCSSCCCS-HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCCCcCc-HHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence            346679999999 643445655 79999999999999999998764     222 12 3455677777777764443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-13
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-11
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	5e-13
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	3e-10
d1sh5a1	120	a.40.1.1 (A:8-127) Actin binding domain of plectin	2e-11
d1dxxa1	111	a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens	7e-10
d1aoaa1	131	a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros	1e-07
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	1e-04
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	0.004

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.3 bits (151), Expect = 2e-13
 Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKL----GKPNNGKMRVHKVENVNKSLAFL 93
               L+  + DG  L KL+ +     +               + EN    L   
Sbjct: 28 PHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSA 82

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 44  EVEDLFIDLADGKKLLKLLEIISGEKLG----KPNNGKMRVHKVENVNKSLAFLHTK 96
            V ++F D+ +G  LL++L+ +S   +          KM   KVEN N+ +      
Sbjct: 287 YVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQL 343

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 60.8 bits (147), Expect = 5e-13
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 43  MEVEDLFIDLADGKKLLKLLEIISGEKL-------GKPNNGKMRVHKVENVNKSLAFLHT 95
            E  + F    DG  L KL+     + +        + N        +EN N  +     
Sbjct: 31  TETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 90

Query: 96  KPGERRPS 103
             G    +
Sbjct: 91  MGGISITN 98

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 41  ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP--------NNGKMRVHKVENVNKSLAF 92
               + D F +L DG  LL+  + I+   +            +  MR   VEN N ++  
Sbjct: 291 VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDL 350

Query: 93  LHTK 96
              +
Sbjct: 351 GKNQ 354

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-11
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPG 98
            + DL+ DL DG  L+ LLE++SG+ L +   G+MR HK++NV  +L +L  +  
Sbjct: 28 RHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQV 82

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 7e-10
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 29 KPYPNQIYSHFQAR--MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENV 86
          K +   + + F       +E+LF DL DG++LL LLE ++G+KL K   G  RVH + NV
Sbjct: 11 KTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNV 69

Query: 87 NKSLAFLHTK 96
          NK+L  L   
Sbjct: 70 NKALRVLQNN 79

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVENVNKSLAFLHTK 96
             +DLF  + DG  L K++ +   + + +              EN+N +L      
Sbjct: 31 PNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAI 87

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFL 93
                   L +G  L  L++    +KL K   + +++    +N+NK L F+
Sbjct: 29 GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFI 80

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 7/60 (11%)

Query: 44 EVEDLFIDLADGKKLLKLLEIISGEKLGK-------PNNGKMRVHKVENVNKSLAFLHTK 96
          ++ +   D+ D K    LL  I+ +   +         +G      ++     L      
Sbjct: 29 KINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	99.9
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.84
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.77
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.69
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.69
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.66
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.57
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.53
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.5
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	98.68
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	97.76
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	96.89
d1wixa_	164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	95.99

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-25  Score=147.70  Aligned_cols=80  Identities=35%  Similarity=0.549  Sum_probs=73.1

Q ss_pred             chhhhhhhhchHHHHHhhc-CCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCC
Q psy10625         21 FFFLFFKSKPYPNQIYSHF-QAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        21 ~~w~~~Q~ktft~WvN~~L-~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi   98 (104)
                      .+|+.+|+||||+|+|+|| +.+ ++|+|+++||+||+.|+.|+|.++|.++++ .+|++|+|+++|++.||+|+++.|+
T Consensus         3 ~e~e~~Q~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~-~~~~~r~~~l~N~~~aL~~~k~~~~   81 (111)
T d1dxxa1           3 YEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQNNNV   81 (111)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCC-CCCCcHhhHHHHHHHHHHHHHHhCC
Confidence            3589999999999999999 544 579999999999999999999999999986 4799999999999999999999998


Q ss_pred             CCC
Q psy10625         99 ERR  101 (104)
Q Consensus        99 ~~~  101 (104)
                      ++.
T Consensus        82 ~~~   84 (111)
T d1dxxa1          82 DLV   84 (111)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            753

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-24  Score=144.00  Aligned_cols=79  Identities=30%  Similarity=0.536  Sum_probs=71.8

Q ss_pred             hhhhhhhhchHHHHHhhc-CCC-----CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh
Q psy10625         22 FFLFFKSKPYPNQIYSHF-QAR-----MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        22 ~w~~~Q~ktft~WvN~~L-~~~-----~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~   95 (104)
                      +|+.+|+||||+|+|+|| +.+     ..|+||++||+||++|+.|+|.++|+++++ .+|++++++++||+.||+|+++
T Consensus         1 e~e~~Q~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~k~eN~~~aL~~~~~   79 (120)
T d1sh5a1           1 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRH   79 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCcccc-CCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 532     469999999999999999999999999986 5799999999999999999999


Q ss_pred             CCCCCC
Q psy10625         96 KPGERR  101 (104)
Q Consensus        96 ~gi~~~  101 (104)
                      .|+++.
T Consensus        80 ~~~~l~   85 (120)
T d1sh5a1          80 RQVKLV   85 (120)
T ss_dssp             TTCCCC
T ss_pred             hccccc
Confidence            998754

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.1e-21  Score=131.65  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             hhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC--C-CCccHHHHHHhHHHHHH
Q psy10625         25 FFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLGKP--N-NGKMRVHKVENVNKSLA   91 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~--~-~p~~r~~kieNv~~al~   91 (104)
                      +.|+++||+|+|+|| +.         +++|+||++||+||++|+.|+|++++++++++  + +|.+++|+++|++.||+
T Consensus         3 e~ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~p~~~~~~~~N~~~~L~   82 (131)
T d1aoaa1           3 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALN   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcchhccCCCcCHHHHHHHHHHHHH
Confidence            578999999999999 42         24799999999999999999999999999753  3 68999999999999999


Q ss_pred             HHhhCCCCCC
Q psy10625         92 FLHTKPGERR  101 (104)
Q Consensus        92 flk~~gi~~~  101 (104)
                      |+++.|+++.
T Consensus        83 ~~k~~gi~l~   92 (131)
T d1aoaa1          83 SASAIGCHVV   92 (131)
T ss_dssp             HHHHTTCCCT
T ss_pred             HHHHhccccC
Confidence            9999998863

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=1.4e-19  Score=144.59  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=67.2

Q ss_pred             hhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCCC-C---CCCccHHHHHHhHHHHHH
Q psy10625         26 FKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLGK-P---NNGKMRVHKVENVNKSLA   91 (104)
Q Consensus        26 ~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~-~---~~p~~r~~kieNv~~al~   91 (104)
                      .|++|||+|||++| +.         +..|+||++||+||+.|+.|+|+|+|++++. +   .+|.+|+|++||++.||+
T Consensus         1 ~qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~   80 (500)
T d1pxya_           1 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLN   80 (500)
T ss_dssp             CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHH
Confidence            48999999999999 53         3469999999999999999999999999973 2   256799999999999999


Q ss_pred             HHhhCCCCCC
Q psy10625         92 FLHTKPGERR  101 (104)
Q Consensus        92 flk~~gi~~~  101 (104)
                      |+++.||++-
T Consensus        81 ~~k~~gi~lv   90 (500)
T d1pxya_          81 SAKAVGCSVV   90 (500)
T ss_dssp             HHHHTTCCCT
T ss_pred             HHHHcCCEEe
Confidence            9999999863

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=1.5e-17  Score=132.52  Aligned_cols=76  Identities=17%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             hhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC------CCC-CCccHHHHHHhHH
Q psy10625         25 FFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLG------KPN-NGKMRVHKVENVN   87 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~------~~~-~p~~r~~kieNv~   87 (104)
                      +.|++|||+|||++| +.         +..|.||++|++||+.|+.|+|+++|+++.      ++. +|.+|+|+++|++
T Consensus         3 e~qk~tft~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~~~~~~~~~~leNv~   82 (505)
T d1rt8a_           3 EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNN   82 (505)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcchhhhcccccccchhhhhHHHHHH
Confidence            579999999999999 43         335899999999999999999999999873      222 6889999999999


Q ss_pred             HHHHHHhh-CCCCC
Q psy10625         88 KSLAFLHT-KPGER  100 (104)
Q Consensus        88 ~al~flk~-~gi~~  100 (104)
                      .||+|++. .|++.
T Consensus        83 ~aL~~~k~~~~~~~   96 (505)
T d1rt8a_          83 VVINSAKAMGGISI   96 (505)
T ss_dssp             HHHHHHHHHSSCCC
T ss_pred             HHHHHHHhcCCcee
Confidence            99999997 56654

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=1.2e-17  Score=133.30  Aligned_cols=77  Identities=23%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             hhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC--CC--CccHHHHHHhHHHHHHHHhhCCC
Q psy10625         23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP--NN--GKMRVHKVENVNKSLAFLHTKPG   98 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~--~~--p~~r~~kieNv~~al~flk~~gi   98 (104)
                      -+..|++|||+|+|++ +...+|+||++||+||+.|+.|+|+|+|+.++..  .+  +++|+|+++||+.||+|+++.||
T Consensus       267 ~~~~~~ktf~~WiNs~-~~~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~ki~N~~~al~~~~~~gi  345 (500)
T d1pxya_         267 ETCRDERCYRLWINSL-GIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKF  345 (500)
T ss_dssp             HHHHHHHHHHHHHTTT-TCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHHHHHHHHhcc-CCCCCcchHHHHHhhhHHHHHHHHHhcCCCCChhhcCCCcccchHHHHHHHHHHHHHHHHcCC
Confidence            4789999999999996 4557799999999999999999999999998732  23  46899999999999999999998


Q ss_pred             CC
Q psy10625         99 ER  100 (104)
Q Consensus        99 ~~  100 (104)
                      ++
T Consensus       346 ~l  347 (500)
T d1pxya_         346 SL  347 (500)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=8.3e-17  Score=128.20  Aligned_cols=76  Identities=21%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             hhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC------C--CCCccHHHHHHhHHHHHHHHhh
Q psy10625         24 LFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGK------P--NNGKMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        24 ~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~------~--~~p~~r~~kieNv~~al~flk~   95 (104)
                      ...++|+||+|+|+++. ...|+||++||+||+.|+.|+|+|+|+++++      +  .+|++|+|+++||+.||+|+++
T Consensus       275 ~~~~~~~~~~WiNs~l~-~~~I~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~~r~~~ieN~~~al~~~~~  353 (505)
T d1rt8a_         275 GEREARVFTLWLNSLDV-TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN  353 (505)
T ss_dssp             HHHHHHHHHHHHHHTTC-SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhccCC-CCcHHHHHhccccHHHHHHHHHHhCCCCcCchhcccccccccchhHHHHHHHHHHHHHHHHH
Confidence            45688999999999763 3469999999999999999999999988742      1  1578999999999999999999


Q ss_pred             CCCCC
Q psy10625         96 KPGER  100 (104)
Q Consensus        96 ~gi~~  100 (104)
                      .|+++
T Consensus       354 ~~i~l  358 (505)
T d1rt8a_         354 QGFSL  358 (505)
T ss_dssp             TTCCC
T ss_pred             hCccc
Confidence            99975

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=101.28  Aligned_cols=78  Identities=6%  Similarity=0.016  Sum_probs=67.9

Q ss_pred             hhhhhhhchHHHHHhhc-C--CCCchhhHH-hhhhhHHHHHHHHHHHcCCcCCC--CC-CCccHHHHHHhHHHHHHHHhh
Q psy10625         23 FLFFKSKPYPNQIYSHF-Q--ARMEVEDLF-IDLADGKKLLKLLEIISGEKLGK--PN-NGKMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        23 w~~~Q~ktft~WvN~~L-~--~~~~V~dl~-~Dl~DG~~Li~LLe~Ls~~~l~~--~~-~p~~r~~kieNv~~al~flk~   95 (104)
                      |....++.+.+|+|+|| +  ....|.|+. +|++||+.|++|++.+++..++.  +. .|.++.++++|++.||+|+++
T Consensus         4 ~~~~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~~~~~~~~~N~~~al~~~~~   83 (124)
T d1wjoa_           4 GSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARR   83 (124)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHHhcccCCccHhhHHHHHHHHHHHHHH
Confidence            55677889999999999 4  456899987 69999999999999999998863  33 588999999999999999999


Q ss_pred             CCCCC
Q psy10625         96 KPGER  100 (104)
Q Consensus        96 ~gi~~  100 (104)
                      .|+.+
T Consensus        84 lgi~~   88 (124)
T d1wjoa_          84 IGARV   88 (124)
T ss_dssp             TCCSC
T ss_pred             hCCcc
Confidence            88864

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-15  Score=99.29  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             hhhhchHHHHHhhc-CCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCC------C-CCccHHHHHHhHHHHHHHHhhC
Q psy10625         26 FKSKPYPNQIYSHF-QAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKP------N-NGKMRVHKVENVNKSLAFLHTK   96 (104)
Q Consensus        26 ~Q~ktft~WvN~~L-~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~------~-~p~~r~~kieNv~~al~flk~~   96 (104)
                      .++++|.+|+|+|| +.+ .+|+|+.+|++||+.|+.|++.++++.+++.      . .|.++.++++|+..|+++++.-
T Consensus         9 ~~E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~l   88 (116)
T d1aoaa2           9 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKL   88 (116)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCcccccccccccccccCcchHHHHHHHHHHHHHHHHHh
Confidence            35789999999999 544 5799999999999999999999999988742      2 4567889999999999999999


Q ss_pred             CCC
Q psy10625         97 PGE   99 (104)
Q Consensus        97 gi~   99 (104)
                      ||.
T Consensus        89 gi~   91 (116)
T d1aoaa2          89 GCR   91 (116)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            987

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.4e-14  Score=100.31  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             hHHHHHhhcCCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         31 YPNQIYSHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        31 ft~WvN~~L~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      ..+|||++|+.. ..++|++++|+||++|++|+++|++..++++. +|+++++++||++.+|+|+++.|+.
T Consensus        16 ~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~~~~~~~~~~~~~~eNi~~fL~~~~~~gv~   86 (159)
T d1p2xa_          16 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLP   86 (159)
T ss_dssp             HHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCceecCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence            678999999444 57999999999999999999999999999765 7899999999999999999999875

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.68  E-value=1.3e-08  Score=66.01  Aligned_cols=70  Identities=20%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             hchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625         29 KPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE   99 (104)
Q Consensus        29 ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~   99 (104)
                      +....|+...++.... .|+.+.|+||++|++|+..|.+..+++++.+.+.+++.+|++.-|+++++-|+.
T Consensus         6 ~e~~~Wie~~~~~~~~-~~~~~~L~dGv~LC~L~N~l~pg~i~ki~~~~~~f~~~eNI~~FL~~~~~~Gv~   75 (108)
T d1h67a_           6 RQLRVWIEGATGRRIG-DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVK   75 (108)
T ss_dssp             HHHHHHHHHHHSCCCC-SCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhCCCCc-hHHHHHHcCchhHHHHHHHHHhcCCCccCCCcchhHHHHHHHHHHHHHHHhCCC
Confidence            3467899997755443 589999999999999999999999998888888999999999999999987764

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.3e-07  Score=63.98  Aligned_cols=73  Identities=15%  Similarity=0.029  Sum_probs=59.5

Q ss_pred             hhhchHHHHHhhcCCCC-----chhhHHhhhhhHHHHHHHHHHHcCCcCCCC---C-CCccHHHHHHhHHHHHHHHhhCC
Q psy10625         27 KSKPYPNQIYSHFQARM-----EVEDLFIDLADGKKLLKLLEIISGEKLGKP---N-NGKMRVHKVENVNKSLAFLHTKP   97 (104)
Q Consensus        27 Q~ktft~WvN~~L~~~~-----~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~---~-~p~~r~~kieNv~~al~flk~~g   97 (104)
                      .++....||+..++...     .-.++.+.|+||++|++|+..|....+++.   . .+.+.+++++|++.-|++++.-|
T Consensus        10 ~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~~~~~~f~~~eNI~~FL~~c~~~G   89 (144)
T d1ujoa_          10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYG   89 (144)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHhC
Confidence            45668999999774331     245899999999999999999998877643   2 46789999999999999999877


Q ss_pred             CC
Q psy10625         98 GE   99 (104)
Q Consensus        98 i~   99 (104)
                      +.
T Consensus        90 v~   91 (144)
T d1ujoa_          90 VI   91 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.4e-07  Score=58.86  Aligned_cols=71  Identities=11%  Similarity=0.122  Sum_probs=55.8

Q ss_pred             hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      -+++.-+|+|.++ + .+..|+|+-+|++||..|+.|+..+.++.++. .. -.....++|+..|++..++ -||.
T Consensus         6 ~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~-~~-l~~~~~~~~~~~af~~a~~~lgip   79 (108)
T d1bhda_           6 SEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW-DK-VVKMSPIERLEHAFSKAQTYLGIE   79 (108)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH-HH-HHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccCh-hh-cCcCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999999999 4 36789999999999999999999999887652 10 0112458899999999866 4765

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.4e-06  Score=53.37  Aligned_cols=69  Identities=6%  Similarity=-0.008  Sum_probs=55.8

Q ss_pred             hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCC
Q psy10625         27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPG   98 (104)
Q Consensus        27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi   98 (104)
                      .+++.-.|||.++ + .+..|+|+-+|++||..++.|+..+.+..++--. .+..   .++|+..|++..++ -||
T Consensus         3 ~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~~~---~~~~~~~a~~~ae~~lgi   75 (108)
T d1bkra_           3 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSN---AHYNLQNAFNLAEQHLGL   75 (108)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTC---HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHHhcccCC---HHHHHHHHHHHHHHhcCC
Confidence            4677889999999 4 3678999999999999999999999998876311 4544   46899999998866 455

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1e-06  Score=58.15  Aligned_cols=74  Identities=9%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             hhhhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         25 FFKSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      ...+++.-+|+|.++ + .+..|+|+-+|++||..|+.|+..+.++.++... -...-...+|++.|++..++ -||.
T Consensus        15 ~~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~~-~l~~~~~~~~~~~a~~~Ae~~lgip   91 (127)
T d1dxxa2          15 TNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNS-VVSQQSATQRLEHAFNIARYQLGIE   91 (127)
T ss_dssp             CCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH-HHTCCCHHHHHHHHHHHHHHTTCCC
T ss_pred             cCHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccchh-hcCcCCHHHHHHHHHHHHHHhCCCC
Confidence            344678999999999 4 3678999999999999999999999998876311 01112567889999998854 5663

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.9e-06  Score=54.64  Aligned_cols=72  Identities=6%  Similarity=0.045  Sum_probs=55.9

Q ss_pred             hhhhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625         25 FFKSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE   99 (104)
Q Consensus        25 ~~Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~   99 (104)
                      ...++....|+|.++ + .+..|+|+-++++||..|+.|+..+.+..++-.. .+.   ..++|++.|++..++ -||.
T Consensus         5 ~s~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~~~---~~~~~~~~a~~~Ae~~lgip   80 (110)
T d1sh5a2           5 MTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQ---TNLENLDQAFSVAERDLGVT   80 (110)
T ss_dssp             CCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHHS---CHHHHHHHHHHHHHHHHCCC
T ss_pred             cCHHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcCcc---CHHHHHHHHHHHHHHcCCCC
Confidence            345778899999999 4 3578999999999999999999988887664211 222   457999999999855 4774

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0017  Score=42.17  Aligned_cols=69  Identities=12%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             hchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625         29 KPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER  100 (104)
Q Consensus        29 ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~  100 (104)
                      .....|+|.-|+.+.  +- .+++++|...++|+..|....+|  +.. +++.....++|...--+.+...||+.
T Consensus         6 ~eLL~WiN~~L~~~~--~k-iEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k   77 (120)
T d2qjza1           6 HDMLAWINESLQLNL--TK-IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   77 (120)
T ss_dssp             HHHHHHHHHHHTCCC--CC-GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCCCh--hh-HHHhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            447899999886553  11 35699999999999999988887  444 78999999999998888888877763

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0074  Score=40.64  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             hchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC-----CCC--CCccHHHHHHhHHHHHHHHhh
Q psy10625         29 KPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG-----KPN--NGKMRVHKVENVNKSLAFLHT   95 (104)
Q Consensus        29 ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-----~~~--~p~~r~~kieNv~~al~flk~   95 (104)
                      .++..|+|+ ++...++.+ +.||.||+.|.+.|..+.++.+.     +..  ...+.+-++.|+...++-|++
T Consensus        12 ~aLv~W~~t-f~~~~~~~~-~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~nw~lr~~NLk~i~~~i~~   83 (164)
T d1wixa_          12 DSLIIWLQT-FKTASPCQD-VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             HHHHHHHTT-CCCSSCCCS-HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCcccCC-HHHHhchHHHHHHHHHhCccccCchhhhcccccccccHHHHHHHHHHHHHHHHH
Confidence            478899999 655555666 78999999999999999987653     322  123456688888888887765