Psyllid ID: psy10639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MFNSPNWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSGSSCSSSWSSASNASYSPGWSTASSKTFEFPHRAFF
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHccccHHHcccccccccccEcccHHHcccccccccccccHHcHEEEcccccccccEEEEEccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfnspnwrhparfrldqKCQQEfhdrgpedihrpiypyqesdrflldpIRYKTELCRslegyrpcqygercrfahsveelrppvrhyryrtrlcrnyhhngvcnygtrcsfihrvpgeevdpvkkyreihgdiqetrdipgaatrgdrsriqsgsscssswssasnasyspgwstassktfefphraff
Flexible Loop (DISEMBL)
mfnspnwrhparfrLDQKCQQEFHdrgpedihrpiypyqesdrfllDPIRYKTELCRSLEGYRPCQYGERCrfahsveelrppvrhYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREihgdiqetrdipgaatrgdrsriqsgsscssswssasnasyspgwstassktfeFPHRAFF
Low Complexity Region (SEG)
MFNSPNWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQsgsscssswssasnasyspgwsTASSKTFEFPHRAFF
Disordered region (IsUnstruct)
******************************IHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREI************************************************************
Disordered Region (DISOPRED)
******************************************************LCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHR*********************************************************************P*RA**
Disordered Region (DISEMBL)
********HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGA**********************************SSKTFEFPHRAFF
Disordered Region (DISPRO)
************************************************IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP*************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNSPNWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSGSSCSSSWSSASNASYSPGWSTASSKTFEFPHRAFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q07352	338	Zinc finger protein 36, C	yes	N/A	0.428	0.239	0.481	8e-17
P23950	338	Zinc finger protein 36, C	yes	N/A	0.428	0.239	0.481	1e-16
P17431	338	Zinc finger protein 36, C	yes	N/A	0.428	0.239	0.481	1e-16
Q7ZXW9	363	Zinc finger protein 36, C	N/A	N/A	0.433	0.225	0.43	3e-16
P23949	367	Zinc finger protein 36, C	no	N/A	0.370	0.190	0.528	4e-16
P47974	494	Zinc finger protein 36, C	no	N/A	0.370	0.141	0.528	4e-16
Q805B4	364	Zinc finger protein 36, C	N/A	N/A	0.433	0.225	0.43	4e-16
A4IIN5	333	Zinc finger protein 36, C	no	N/A	0.433	0.246	0.42	2e-15
P47980	436	Protein TIS11 OS=Drosophi	yes	N/A	0.370	0.160	0.5	2e-14
Q6S9E0	325	Tristetraprolin OS=Ovis a	N/A	N/A	0.370	0.215	0.507	3e-14

>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 50  RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
           RYKTELCR  E    C+YG++C+FAH + ELR   RH +Y+T LCR +H  G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173

Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
            FIH    EE   +   R++  D
Sbjct: 174 HFIHNA--EERRALAGARDLSAD 194

Probable regulatory protein involved in regulating the response to growth factors.
Homo sapiens (taxid: 9606)

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 50  RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
           RYKTELCR  E    C+YG++C+FAH + ELR   RH +Y+T LCR +H  G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173

Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
            FIH    EE   +   R++  D
Sbjct: 174 HFIHNA--EERRALAGGRDLSAD 194

Probable regulatory protein involved in regulating the response to growth factors.

Mus musculus (taxid: 10090)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 50  RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
           RYKTELCR  E    C+YG++C+FAH + ELR   RH +Y+T LCR +H  G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173

Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
            FIH    EE   +   R++  D
Sbjct: 174 HFIHNA--EERRALAGGRDLSAD 194

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 18/100 (18%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C Y
Sbjct: 127 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 186

Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
           G RC FIH                  + +E R  PGA  R
Sbjct: 187 GPRCHFIH------------------NAEERRQAPGAGER 208

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 45/70 (64%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C Y
Sbjct: 122 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 181

Query: 106 GTRCSFIHRV 115
           G RC FIH  
Sbjct: 182 GPRCHFIHNA 191

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Mus musculus (taxid: 10090)

>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 45/70 (64%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C Y
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 208

Query: 106 GTRCSFIHRV 115
           G RC FIH  
Sbjct: 209 GPRCHFIHNA 218

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Homo sapiens (taxid: 9606)

>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 18/100 (18%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C Y
Sbjct: 129 VNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 188

Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
           G RC FIH                  + +E R  PGA  R
Sbjct: 189 GPRCHFIH------------------NAEERRQAPGAGER 210

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 18/100 (18%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C Y
Sbjct: 97  VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 156

Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
           G RC  IH                  + +E R  PGA  R
Sbjct: 157 GPRCHLIH------------------NAEERRQAPGAGER 178

Required for tubulogenesis during pronephros development.

Xenopus tropicalis (taxid: 8364)

>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query: 46  LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
           ++  RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T  CR +H  G C Y
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPY 190

Query: 106 GTRCSFIHRV 115
           G RC F+H  
Sbjct: 191 GPRCHFVHNA 200

Drosophila melanogaster (taxid: 7227)

>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 50  RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
           RYKTELCR+      C+YG +C+FAH + ELR P RH +Y+T LC  ++  G C YG+RC
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPYGSRC 160

Query: 110 SFIHRVPGEEV 120
            FIH  P E++
Sbjct: 161 HFIHN-PSEDL 170

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
387592884	237	hypothetical protein NEQG_01980 [Nematoc	0.433	0.345	0.483	2e-17
378754867	239	hypothetical protein NERG_01951 [Nematoc	0.433	0.343	0.472	4e-17
326433056	888	hypothetical protein PTSG_01604 [Salping	0.354	0.075	0.582	8e-17
167378199	211	tristetraproline [Entamoeba dispar SAW76	0.544	0.488	0.439	2e-16
183232062	212	zinc finger protein [Entamoeba histolyti	0.354	0.316	0.558	4e-16
391331981	485	PREDICTED: uncharacterized protein LOC10	0.370	0.144	0.542	4e-16
440798766	740	zinc finger domain containing protein [A	0.507	0.129	0.438	7e-16
355778689	338	hypothetical protein EGM_16749 [Macaca f	0.444	0.248	0.476	9e-16
302790343	425	hypothetical protein SELMODRAFT_416803 [	0.666	0.296	0.404	1e-15
391330077	354	PREDICTED: uncharacterized protein LOC10	0.380	0.203	0.540	1e-15

>gi|387592884|gb|EIJ87908.1| hypothetical protein NEQG_01980 [Nematocida parisii ERTm3] gi|387595502|gb|EIJ93126.1| hypothetical protein NEPG_02082 [Nematocida parisii ERTm1]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 9/91 (9%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTE+C+S E    C YG++C+FAHS+ ELR   RH RY+T LC+ Y   G C YG RC 
Sbjct: 41  YKTEICKSFESSNYCTYGDKCQFAHSLHELRDIERHPRYKTELCKTYTTTGECTYGKRCC 100

Query: 111 FIHRVPGEEVDPVKKYREIHGDIQETRDIPG 141
           FIH  P E         +IH D+Q+ R++PG
Sbjct: 101 FIHAGPSE---------DIHTDLQDARNLPG 122

Source: Nematocida parisii ERTm3

Species: Nematocida parisii

Genus: Nematocida

Phylum: Microsporidia

Superkingdom: Eukaryota

>gi|378754867|gb|EHY64895.1| hypothetical protein NERG_01951 [Nematocida sp. 1 ERTm2]

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 9/91 (9%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTE+C+S E    C YG++C+FAHS+ ELR   RH RY+T LC+ Y   G C YG RC 
Sbjct: 42  YKTEICKSFENSNFCTYGDKCQFAHSLNELRDIERHPRYKTELCKTYTTTGECTYGKRCC 101

Query: 111 FIHRVPGEEVDPVKKYREIHGDIQETRDIPG 141
           FIH  P E+          H D+Q+ R++PG
Sbjct: 102 FIHTGPSEDA---------HTDLQDARNMPG 123

Source: Nematocida sp. 1 ERTm2

Species: Nematocida sp. 1

Genus: Nematocida

Phylum: Microsporidia

Superkingdom: Eukaryota

>gi|326433056|gb|EGD78626.1| hypothetical protein PTSG_01604 [Salpingoeca sp. ATCC 50818]

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 48/67 (71%)

Query: 49  IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTR 108
            RYKTELCR+    + C+YGE+C+FAH  EELRP  RH +Y+T LCR +H  GVC YG R
Sbjct: 236 TRYKTELCRAWLDGKVCKYGEKCQFAHGEEELRPIQRHPKYKTELCRTFHTTGVCPYGPR 295

Query: 109 CSFIHRV 115
           C FIH +
Sbjct: 296 CHFIHEI 302

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|167378199|ref|XP_001734711.1| tristetraproline [Entamoeba dispar SAW760] gi|165903659|gb|EDR29114.1| tristetraproline, putative [Entamoeba dispar SAW760]

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 45  LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCN 104
           +++   YKTELCRS      C+YG +C+FAH  +ELRP  RH RY+T +C+ +H  G C 
Sbjct: 100 IINTSLYKTELCRSFVETGTCRYGNKCQFAHGEKELRPVQRHPRYKTEICQTFHQTGTCK 159

Query: 105 YGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRI 151
           YG+RC FIH +PGE   PV    +I    Q   DI  ++T  D +R+
Sbjct: 160 YGSRCRFIHVLPGEP-SPVSDCVDI-PQTQNFSDI--SSTDEDSNRL 202

Source: Entamoeba dispar SAW760

Species: Entamoeba dispar

Genus: Entamoeba

Superkingdom: Eukaryota

>gi|183232062|ref|XP_652977.2| zinc finger protein [Entamoeba histolytica HM-1:IMSS] gi|169802218|gb|EAL47591.2| zinc finger protein, putative [Entamoeba histolytica HM-1:IMSS] gi|407042890|gb|EKE41602.1| zinc finger protein, putative [Entamoeba nuttalli P19] gi|449705641|gb|EMD45650.1| zinc finger protein, putative [Entamoeba histolytica KU27]

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 48/68 (70%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTELCRS      C+YG +C+FAH  +ELRP  RH RY+T +C+ +H  G C YG+RC 
Sbjct: 107 YKTELCRSFVETGTCRYGNKCQFAHGEKELRPVQRHPRYKTEICQTFHQTGTCKYGSRCR 166

Query: 111 FIHRVPGE 118
           FIH +PGE
Sbjct: 167 FIHVLPGE 174

Source: Entamoeba histolytica HM-1:IMSS

Species: Entamoeba histolytica

Genus: Entamoeba

Superkingdom: Eukaryota

>gi|391331981|ref|XP_003740417.1| PREDICTED: uncharacterized protein LOC100906487 [Metaseiulus occidentalis]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%)

Query: 44  FLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVC 103
             L+  RYKTELCR  E    C+YG++C+FAH +EELR   RH +Y+T LCR +H  G+C
Sbjct: 166 LALNSSRYKTELCRPFEENGICKYGDKCQFAHGIEELRSLARHPKYKTELCRTFHTTGLC 225

Query: 104 NYGTRCSFIH 113
            YG RC FIH
Sbjct: 226 PYGPRCHFIH 235

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440798766|gb|ELR19831.1| zinc finger domain containing protein [Acanthamoeba castellanii str. Neff]

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTELCRS      C+YG +C+FAH  +ELRP +RH +Y+T +C+ +H  G C YGTRC 
Sbjct: 240 YKTELCRSFVETGACRYGSKCQFAHGRKELRPVLRHPKYKTEICKTFHTIGTCPYGTRCR 299

Query: 111 FIHRVPGEE--VDPVKKYREIHGDIQETRDIPGAATRG 146
           FIH+ PG+   +D         G  Q T  +  +A+ G
Sbjct: 300 FIHKRPGDSDIIDNSVILPVPPGGGQGTNGLSSSASVG 337

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

>gi|355778689|gb|EHH63725.1| hypothetical protein EGM_16749 [Macaca fascicularis]

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 47  DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYG 106
           +P RYKTELCR  E    C+YG++C+FAH + ELR   RH +Y+T LCR +H  G C YG
Sbjct: 111 NPSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYG 170

Query: 107 TRCSFIHRVPGEEVDPVKKYREIHGD 132
            RC FIH    EE   +   R++  D
Sbjct: 171 PRCHFIHNA--EERRALAGARDLSAD 194

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|302790343|ref|XP_002976939.1| hypothetical protein SELMODRAFT_416803 [Selaginella moellendorffii] gi|300155417|gb|EFJ22049.1| hypothetical protein SELMODRAFT_416803 [Selaginella moellendorffii]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTELCRS E    C+YG +C+FAH  E+LRP  RH +Y+T +CR +   G C YG RC 
Sbjct: 11  YKTELCRSWEETGSCRYGNKCQFAHGKEDLRPVNRHPKYKTEVCRTFSAAGTCPYGKRCR 70

Query: 111 FIHRVPGEEVDPVKKYREIHGDIQETRDI--PGAATRGDRSRIQSGSSCSSSW-SSASNA 167
           FIH  P  ++  VK    +   +  T+ +    AA    RSR+ +    + +  SS+SNA
Sbjct: 71  FIHATP--KLSDVKLPPLVAPAMNLTKLLLHDNAAAMAPRSRLPAMEGLALALDSSSSNA 128

Query: 168 SYSPGWSTASS 178
            +S    +ASS
Sbjct: 129 LHSAALLSASS 139

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391330077|ref|XP_003739491.1| PREDICTED: uncharacterized protein LOC100902394 [Metaseiulus occidentalis]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 50  RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
           RYKTELCR  E    C+YG RC+FAH   ELR   RH +Y+++LCR +H NG+C YG RC
Sbjct: 92  RYKTELCRPFEENGMCKYGARCQFAHGAAELRTLARHPKYKSQLCRTFHSNGLCPYGHRC 151

Query: 110 SFIHRVPGEEVDPV 123
            FIH    +E+ PV
Sbjct: 152 HFIHN--QDEIRPV 163

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
UNIPROTKB|Q7ZXW9	363	zfp36l2-A "Zinc finger protein	0.492	0.256	0.436	2.3e-19
UNIPROTKB|Q805B4	364	zfp36l2-B "Zinc finger protein	0.470	0.244	0.449	3.2e-19
UNIPROTKB|A7MB98	338	ZFP36L1 "Uncharacterized prote	0.571	0.319	0.414	8.3e-19
UNIPROTKB|A4IIN5	333	zfp36l2 "Zinc finger protein 3	0.492	0.279	0.421	8.4e-19
UNIPROTKB|E2R2W0	338	ZFP36L1 "Uncharacterized prote	0.571	0.319	0.405	4.2e-18
UNIPROTKB|I3LB77	338	ZFP36L1 "Uncharacterized prote	0.571	0.319	0.405	4.2e-18
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.571	0.613	0.405	4.6e-18
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.571	0.521	0.405	4.6e-18
UNIPROTKB|Q07352	338	ZFP36L1 "Zinc finger protein 3	0.571	0.319	0.405	5.6e-18
MGI|MGI:107946	338	Zfp36l1 "zinc finger protein 3	0.571	0.319	0.405	5.6e-18

UNIPROTKB|Q7ZXW9 zfp36l2-A "Zinc finger protein 36, C3H1 type-like 2-A" [Xenopus laevis (taxid:8355)]

 Score = 217 (81.4 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 41/94 (43%), Positives = 53/94 (56%)

Query:    21 QEFHDRGPEDIHR-PIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
             + F + G    H   +   Q+     ++  RYKTELCR  E    C+YGE+C+FAH   E
Sbjct:   101 RSFSENGERSQHLLHLQQQQQKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHE 160

Query:    80 LRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
             LR   RH +Y+T LCR +H  G C YG RC FIH
Sbjct:   161 LRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 194

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

UNIPROTKB|Q805B4 zfp36l2-B "Zinc finger protein 36, C3H1 type-like 2-B" [Xenopus laevis (taxid:8355)]

 Score = 216 (81.1 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 40/89 (44%), Positives = 51/89 (57%)

Query:    25 DRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV 84
             +R    +H      Q+     ++  RYKTELCR  E    C+YGE+C+FAH   ELR   
Sbjct:   108 ERSQHLLHLQQQQQQQKAGAQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRSLT 167

Query:    85 RHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
             RH +Y+T LCR +H  G C YG RC FIH
Sbjct:   168 RHPKYKTELCRTFHTIGFCPYGPRCHFIH 196

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0039020 "pronephric nephron tubule development" evidence=IMP

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=IMP

GO:0072080 "nephron tubule development" evidence=IMP

UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/111 (41%), Positives = 62/111 (55%)

Query:    23 FHDRG-PEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   E   R + P ++     ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    86 FRDRSFSEGGERLLPPQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 194

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A4IIN5 zfp36l2 "Zinc finger protein 36, C3H1 type-like 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 209 (78.6 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
 Identities = 40/95 (42%), Positives = 52/95 (54%)

Query:    21 QEFHDRGPEDIHRPIYPYQESDRF--LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVE 78
             + F + G    H      Q+  +    ++  RYKTELCR  E    C+YGE+C+FAH   
Sbjct:    70 RSFSENGERSQHLLHLQQQQQQKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFH 129

Query:    79 ELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
             ELR   RH +Y+T LCR +H  G C YG RC  IH
Sbjct:   130 ELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHLIH 164

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

UNIPROTKB|E2R2W0 ZFP36L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    86 FRDRSFSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 194

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|I3LB77 ZFP36L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    86 FRDRSFSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 194

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    64 FRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 123

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   124 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 172

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    92 FRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 151

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   152 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 200

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    86 FRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGARDLSAD 194

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    23 FHDRGPEDIHRPIYPYQESDRF-LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
             F DR   +    + P Q+      ++  RYKTELCR  E    C+YG++C+FAH + ELR
Sbjct:    86 FRDRSFSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

Query:    82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGD 132
                RH +Y+T LCR +H  G C YG RC FIH    EE   +   R++  D
Sbjct:   146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA--EERRALAGGRDLSAD 194

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	1e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-04
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	7e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
           YKTE+ RS      C+Y ++  FAHS         H +Y+T     + + G   Y  RC 
Sbjct: 113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCC 172

Query: 111 FIH 113
           FI 
Sbjct: 173 FIS 175

Length = 351

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 89  YRTRLCRNYHHNGVCNYGTRCSFIH 113
           Y+T LCR +   G C YG RC F H
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAH 25

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSV 77
          YKTELCR       C+YG+RC+FAH  
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 51  YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRH--YRYRTRLCRNYHHNGVCNYGTR 108
           ++TE C + E    C YG RC F H  +            Y    CR     G    G  
Sbjct: 272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGA 331

Query: 109 CSFIH 113
                
Sbjct: 332 VCKSF 336

Length = 351

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 88  RYRTRLCRNYHHNGVCNYGTRCSFIH 113
           +Y+T LC+ +   G C  G RC F H
Sbjct: 1   KYKTELCKFFK-RGYCPRGDRCKFAH 25

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG1677|consensus	332		99.67
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.24
KOG1595|consensus	528		99.24
KOG1677|consensus	332		99.1
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.1
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.66
KOG1040|consensus	325		98.46
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.46
KOG2333|consensus	614		98.43
smart00356	27	ZnF_C3H1 zinc finger.	98.17
KOG1595|consensus	528		98.01
smart00356	27	ZnF_C3H1 zinc finger.	97.9
KOG2494|consensus	331		97.85
KOG1763|consensus	343		97.73
KOG1040|consensus	325		97.49
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.36
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.27
KOG1492|consensus	377		97.02
KOG1492|consensus	377		96.48
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.38
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.44
COG5152	259	Uncharacterized conserved protein, contains RING a	95.05
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	94.78
KOG2185|consensus	486		94.74
COG5152	259	Uncharacterized conserved protein, contains RING a	94.03
KOG2185|consensus	486		92.78
KOG1813|consensus	313		91.83
KOG4791|consensus	667		91.37
KOG2494|consensus	331		90.12
KOG4791|consensus	667		89.93
KOG1039|consensus	344		89.91
KOG1039|consensus	344		88.59
KOG1813|consensus	313		86.75
KOG2333|consensus	614		83.14
KOG2202|consensus	260		81.79
KOG3702|consensus	681		80.89

>KOG1677|consensus

Probab=99.67  E-value=5.9e-17  Score=142.57  Aligned_cols=103  Identities=39%  Similarity=0.770  Sum_probs=79.4

Q ss_pred             CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCC-CCCccccccCcccC----
Q psy10639          7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQY-GERCRFAHSVEELR----   81 (189)
Q Consensus         7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~-Gd~C~FaH~~~elr----   81 (189)
                      +...+-|.++..|.+.+....  ....++.    .......+..+||++|++|...|.|+| |++|+|+|+.++++    
T Consensus        92 ~~~~~~~~~~s~~~~~~p~~~--~~~~~~~----~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~  165 (332)
T KOG1677|consen   92 YLRTGVCGYGSSCRYNHPDLR--LRPRPVR----RSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS  165 (332)
T ss_pred             ccccCCCCCCCCCCccCcccc--cccCCcc----ccccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc
Confidence            345677777777766533210  0111111    112345788899999999999999999 99999999999999    


Q ss_pred             --CCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         82 --PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        82 --~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                        .+..+++|||++|..|+++|.|+||.+|+|+|..
T Consensus       166 ~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  166 ENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             chhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence              4456889999999999999999999999999994

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.24  E-value=5.8e-12  Score=111.37  Aligned_cols=98  Identities=20%  Similarity=0.330  Sum_probs=83.0

Q ss_pred             CCCCCccccc---cccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCC
Q psy10639          6 NWRHPARFRL---DQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRP   82 (189)
Q Consensus         6 ~~~~~g~c~~---g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~   82 (189)
                      .|..-|.|.|   |.+||++=.-||-++++.           .-....|+|+.|..|++.|.|+||.+|.|+|+.++...
T Consensus       235 ~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-----------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie  303 (351)
T COG5063         235 SFTRKGTCPYWISGVKCQFACRGHGLNELKS-----------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE  303 (351)
T ss_pred             ccCcCCCCccccccccccccccccccccccc-----------cccccccccCCccchhhcccCccccccccccCChhhcc
Confidence            4677899999   999998743355444421           23456799999999999999999999999999999877


Q ss_pred             Ccccc--ccccccccccccccccCCCCCCCCCCC
Q psy10639         83 PVRHY--RYRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        83 ~~~~p--~~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      +..++  .|+..+|+.++..|.|++|.+|.+.|+
T Consensus       304 ~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~d  337 (351)
T COG5063         304 MYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFD  337 (351)
T ss_pred             ccccccccccccccccccccCccCCCCchhhccc
Confidence            77777  788999999999999999999999999

>KOG1595|consensus

Probab=99.24  E-value=1.7e-11  Score=114.64  Aligned_cols=93  Identities=28%  Similarity=0.540  Sum_probs=76.8

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccc
Q psy10639         11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYR   90 (189)
Q Consensus        11 g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~k   90 (189)
                      ++|.-++.|+|.   |          |.++.+|...+.-.|..+.|+.|. +|.|+.||.|.|+|++-|.  .....+||
T Consensus       207 ~~shDwteCPf~---H----------pgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc--wLHPa~YR  270 (528)
T KOG1595|consen  207 PRSHDWTECPFA---H----------PGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC--WLHPARYR  270 (528)
T ss_pred             ccCCCcccCCcc---C----------CCcccccCCcccccccCccCcccc-cCCCCCCCccccccceehh--hcCHHHhc
Confidence            467777888875   4          234455656677789999999999 7999999999999999986  44556899


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCcCCCcc
Q psy10639         91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKK  125 (189)
Q Consensus        91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~~~  125 (189)
                      |++|+.   .|+|++ .-|.|||.  .+|++++..
T Consensus       271 T~~CkD---g~~C~R-rvCfFAH~--~eqLR~l~~  299 (528)
T KOG1595|consen  271 TRKCKD---GGYCPR-RVCFFAHS--PEQLRPLPP  299 (528)
T ss_pred             cccccC---CCCCcc-ceEeeecC--hHHhcccCC
Confidence            999995   599999 89999999  899988753

>KOG1677|consensus

Probab=99.10  E-value=5.3e-11  Score=104.86  Aligned_cols=74  Identities=32%  Similarity=0.676  Sum_probs=60.6

Q ss_pred             CCCCCccccc-cccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCc
Q psy10639          6 NWRHPARFRL-DQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV   84 (189)
Q Consensus         6 ~~~~~g~c~~-g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~   84 (189)
                      .|+++|.|.+ |.+|+|.   |+.++++.++     ......++.+|||++|.+|...|.|+||.+|+|+|+..+.+...
T Consensus       137 ~~~~~g~c~y~ge~crfa---h~~~e~r~~~-----~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~  208 (332)
T KOG1677|consen  137 SFRKSGTCKYRGEQCRFA---HGLEELRLPS-----SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASN  208 (332)
T ss_pred             eeecCccccccCchhhhc---CCcccccccc-----cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccc
Confidence            5889999999 9999874   6666776554     11235678999999999999899999999999999999887765


Q ss_pred             ccc
Q psy10639         85 RHY   87 (189)
Q Consensus        85 ~~p   87 (189)
                      .++
T Consensus       209 ~~~  211 (332)
T KOG1677|consen  209 RHP  211 (332)
T ss_pred             cCC
Confidence            544

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.10  E-value=8.9e-11  Score=103.93  Aligned_cols=72  Identities=39%  Similarity=0.809  Sum_probs=65.7

Q ss_pred             ccCCCCccc--cccccccCcccCCC---CCCcccc---ccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639         45 LLDPIRYKT--ELCRSLEGYRPCQY---GERCRFA---HSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP  116 (189)
Q Consensus        45 ~~~~~kyKT--~lCr~f~~~G~C~~---Gd~C~Fa---H~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~  116 (189)
                      .++...|||  +||..|.-.|.|++   |+.|+|+   ||..++........|+|++|..|...|+|+||.+|.|+|+..
T Consensus       220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~  299 (351)
T COG5063         220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDD  299 (351)
T ss_pred             hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCCh
Confidence            345667899  99999999999999   9999999   999999877777889999999999999999999999999953

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.66  E-value=3.4e-09  Score=62.29  Aligned_cols=26  Identities=50%  Similarity=1.136  Sum_probs=16.7

Q ss_pred             ccccccccccCcccCCCCCCcccccc
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAHS   76 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH~   76 (189)
                      ||+++|++|+..|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            56777777776677777777777775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1040|consensus

Probab=98.46  E-value=6.6e-08  Score=86.78  Aligned_cols=58  Identities=26%  Similarity=0.655  Sum_probs=47.1

Q ss_pred             CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639         49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP  116 (189)
Q Consensus        49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~  116 (189)
                      ...++++|++|+ .|.|+.||.|.|+|.. ++        -+...|.+|...|.|.+|..|.|.|..+
T Consensus        73 ~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~--------~k~rec~ff~~~g~c~~~~~c~y~h~dp  130 (325)
T KOG1040|consen   73 DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DL--------TKMRECKFFSLFGECTNGKDCPYLHGDP  130 (325)
T ss_pred             ccCCceeehhhh-hhhhhccCcCcchhhh-hh--------cccccccccccccccccccCCcccCCCh
Confidence            478899999999 9999999999999988 44        2455677777777777777777777754

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.46  E-value=2.6e-08  Score=58.49  Aligned_cols=26  Identities=42%  Similarity=1.175  Sum_probs=21.6

Q ss_pred             cccccccccccccccCCCCCCCCCCC
Q psy10639         89 YRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        89 ~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      |++++|++|.+.|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            57899999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2333|consensus

Probab=98.43  E-value=6.4e-08  Score=90.68  Aligned_cols=66  Identities=29%  Similarity=0.617  Sum_probs=54.5

Q ss_pred             cccccccccCc--ccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCC
Q psy10639         52 KTELCRSLEGY--RPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEE  119 (189)
Q Consensus        52 KT~lCr~f~~~--G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee  119 (189)
                      +..||......  -.|.|||+|+|.||++.+  +..++.+...-|..|.+.|.|+||..|||+-.+..++
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ay--LatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~  142 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAY--LATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIE  142 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHH--HhccCcccCCccceeeccccCCccceeehhhcccCcc
Confidence            57899999854  489999999999999987  3344556778899999999999999999996653433

>smart00356 ZnF_C3H1 zinc finger

Probab=98.17  E-value=1.2e-06  Score=50.26  Aligned_cols=25  Identities=56%  Similarity=1.206  Sum_probs=17.1

Q ss_pred             ccccccccccCcccCCCCCCcccccc
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAHS   76 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH~   76 (189)
                      +|+.+|++| ..|.|.+|++|+|+|+
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            466677777 3677777777777775

>KOG1595|consensus

Probab=98.01  E-value=4.1e-06  Score=79.01  Aligned_cols=67  Identities=27%  Similarity=0.588  Sum_probs=56.4

Q ss_pred             ccccccccccCcccCCCCCCccccc-cCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCCcCC
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAH-SVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDP  122 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH-~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~  122 (189)
                      ||++.|..    +.|.-+-.|.|+| +..+.|.-+++-.|..++|+.| .+|.|..|+.|.|+|++-+-.+=|
T Consensus       199 fKir~C~R----~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgvfEcwLHP  266 (528)
T KOG1595|consen  199 FKIRRCSR----PRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGVFECWLHP  266 (528)
T ss_pred             eeecccCC----ccCCCcccCCccCCCcccccCCcccccccCccCccc-ccCCCCCCCccccccceehhhcCH
Confidence            78888874    4699999999999 8778777777778999999999 479999999999999985544433

>smart00356 ZnF_C3H1 zinc finger

Probab=97.90  E-value=7.3e-06  Score=46.91  Aligned_cols=25  Identities=48%  Similarity=1.233  Sum_probs=22.9

Q ss_pred             cccccccccccccccCCCCCCCCCCC
Q psy10639         89 YRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        89 ~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      +++.+|++| ..|.|.+|++|+|+|+
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            577899999 7999999999999997

>KOG2494|consensus

Probab=97.85  E-value=4.6e-06  Score=74.68  Aligned_cols=61  Identities=26%  Similarity=0.609  Sum_probs=48.2

Q ss_pred             CCCccccccccccCcccCCCCCC-ccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         48 PIRYKTELCRSLEGYRPCQYGER-CRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        48 ~~kyKT~lCr~f~~~G~C~~Gd~-C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      ..+..-++||.|+ .|.|.+||+ |+|+|.....-    ...-+..-|..|. .|.|.+ ++|+|+|..
T Consensus        32 ~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~----V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp   93 (331)
T KOG2494|consen   32 TKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQ----VSNGRVIACFDSQ-KGRCSR-ENCKYLHPP   93 (331)
T ss_pred             cchhHHHHHHHHH-hccccCCCccccccCCCCCCC----ccCCeEEEEeccc-cCccCc-ccceecCCC
Confidence            4456679999999 999999999 99999776431    1123456799995 999998 569999995

>KOG1763|consensus

Probab=97.73  E-value=5e-06  Score=73.82  Aligned_cols=73  Identities=23%  Similarity=0.580  Sum_probs=53.2

Q ss_pred             CCCCccccccccccCcccCCCCCCccccccCcccCCCcc------------------------c--cccc-ccccccccc
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVR------------------------H--YRYR-TRLCRNYHH   99 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~------------------------~--p~~k-t~lCk~f~~   99 (189)
                      .....|+++|-+|. .|.|..|+.|.|+|+....+....                        +  +... -.+|++|.-
T Consensus        86 ~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe  164 (343)
T KOG1763|consen   86 KGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE  164 (343)
T ss_pred             cCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence            34557999999998 899999999999999876543221                        1  1111 148999873


Q ss_pred             ------cc---ccCCCC-CCCCCCCCCCCCc
Q psy10639        100 ------NG---VCNYGT-RCSFIHRVPGEEV  120 (189)
Q Consensus       100 ------~G---~C~~G~-~CrFaH~~~~ee~  120 (189)
                            .|   .||+|. .|.|.|..|..-+
T Consensus       165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~GyV  195 (343)
T KOG1763|consen  165 AVENGKYGWFWECPNGGDKCIYRHALPEGYV  195 (343)
T ss_pred             HHhcCCccceeECCCCCCeeeeeecCCcchh
Confidence                  34   499985 8999999876543

>KOG1040|consensus

Probab=97.49  E-value=5e-05  Score=68.38  Aligned_cols=83  Identities=19%  Similarity=0.454  Sum_probs=54.0

Q ss_pred             CCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcc--cCCCc--
Q psy10639          9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE--LRPPV--   84 (189)
Q Consensus         9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e--lr~~~--   84 (189)
                      ..|.|+.|++|.|.+..                       ...|-+.|.+|...|.|..|+.|.|.|+.-+  ....+  
T Consensus        84 l~glC~kgD~C~Flhe~-----------------------~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~  140 (325)
T KOG1040|consen   84 LRGLCKKGDQCEFLHEY-----------------------DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY  140 (325)
T ss_pred             hhhhhhccCcCcchhhh-----------------------hhcccccccccccccccccccCCcccCCChhhhhhccchh
Confidence            35778888888876331                       2345567777777888888888888887621  11000  


Q ss_pred             -----------cccccccccccccccccccCCCCC-CCCCCCC
Q psy10639         85 -----------RHYRYRTRLCRNYHHNGVCNYGTR-CSFIHRV  115 (189)
Q Consensus        85 -----------~~p~~kt~lCk~f~~~G~C~~G~~-CrFaH~~  115 (189)
                                 .....+..+|..|. .|.|+-|.+ |-+.|..
T Consensus       141 ~~g~c~~g~~c~~~h~~~~~c~~y~-~gfC~~g~q~c~~~hp~  182 (325)
T KOG1040|consen  141 KEGFCRGGPSCKKRHERKVLCPPYN-AGFCPKGPQRCDMLHPE  182 (325)
T ss_pred             hhccCCCcchhhhhhhcccCCCchh-hhhccCCCCcccccCCC
Confidence                       01112336788885 889999877 9998883

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.36  E-value=0.0002  Score=63.48  Aligned_cols=60  Identities=23%  Similarity=0.581  Sum_probs=51.1

Q ss_pred             CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639         49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP  116 (189)
Q Consensus        49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~  116 (189)
                      ..+..++|++|. .|.|+.|..|.|+|+.+-.+.       -+..|+.|...|.|..|..|.+.|.++
T Consensus       100 ~~~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s-------~~~~c~~Fs~~G~cs~g~~c~~~h~dp  159 (285)
T COG5084         100 VLSSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS-------QGPPCRSFSLKGSCSSGPSCGYSHIDP  159 (285)
T ss_pred             cccCCcccchhc-cccCcCCCccccccCCCcccc-------cCCCcccccccceeccCCCCCccccCc
Confidence            358899999998 999999999999999886532       256799998899999999999999863

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.27  E-value=3.7e-05  Score=66.73  Aligned_cols=69  Identities=33%  Similarity=0.748  Sum_probs=52.5

Q ss_pred             CCCccccccccccCcccCCCCCCccccccCcccCCCccc-------------cc----c--cccccccccc------cc-
Q psy10639         48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRH-------------YR----Y--RTRLCRNYHH------NG-  101 (189)
Q Consensus        48 ~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~-------------p~----~--kt~lCk~f~~------~G-  101 (189)
                      ....|+++|-.|. .+.|..|+.|+|+|+.++.|.....             +-    +  ..++|++|.-      .| 
T Consensus        80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw  158 (299)
T COG5252          80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW  158 (299)
T ss_pred             ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence            3457999999999 8999999999999998876654321             10    1  2368998863      22 


Q ss_pred             --ccCCC-CCCCCCCCCCC
Q psy10639        102 --VCNYG-TRCSFIHRVPG  117 (189)
Q Consensus       102 --~C~~G-~~CrFaH~~~~  117 (189)
                        .||+| .+|.|.|..|.
T Consensus       159 ~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         159 GWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeeCCCCCceeeeeeccCc
Confidence              59998 68999999876

>KOG1492|consensus

Probab=97.02  E-value=0.00028  Score=61.39  Aligned_cols=48  Identities=15%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639          7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus         7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      ++..|-|-.|..|-|.|.         |                .+..+|+.|. .|.|...+.|+..|..+..
T Consensus       212 ynangicgkgaacrfvhe---------p----------------trkticpkfl-ngrcnkaedcnlsheldpr  259 (377)
T KOG1492|consen  212 YNANGICGKGAACRFVHE---------P----------------TRKTICPKFL-NGRCNKAEDCNLSHELDPR  259 (377)
T ss_pred             ecCCCcccCCceeeeecc---------c----------------cccccChHHh-cCccCchhcCCcccccCcc
Confidence            345677777888866522         1                1234566666 6666666666666666544

>KOG1492|consensus

Probab=96.48  E-value=0.0017  Score=56.66  Aligned_cols=66  Identities=27%  Similarity=0.494  Sum_probs=47.2

Q ss_pred             ccccccccccCcccCCCCCCccccccCcccCCCc---------------ccc--ccccccccccccccccCCCCCCCCCC
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV---------------RHY--RYRTRLCRNYHHNGVCNYGTRCSFIH  113 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~p--~~kt~lCk~f~~~G~C~~G~~CrFaH  113 (189)
                      .....|++|...|.|-.|..|+|.|.+.....-+               .+.  ..+...|++|. .|.|.+ .+|||.|
T Consensus       204 psavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfl-lgkcnn-pncryvh  281 (377)
T KOG1492|consen  204 PSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNN-PNCRYVH  281 (377)
T ss_pred             CceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCC-CCceEEE
Confidence            3567899999999999999999999765321111               011  22456799885 899965 8999998


Q ss_pred             CCCCC
Q psy10639        114 RVPGE  118 (189)
Q Consensus       114 ~~~~e  118 (189)
                      -.-.|
T Consensus       282 ihyse  286 (377)
T KOG1492|consen  282 IHYSE  286 (377)
T ss_pred             EeecC
Confidence            75443

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.38  E-value=0.0037  Score=55.50  Aligned_cols=55  Identities=27%  Similarity=0.630  Sum_probs=44.7

Q ss_pred             cccccccccCcccCCCCCCccccccCcccCCCcccccccccccccccc--ccccCCCCCCCCCCCC
Q psy10639         52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHH--NGVCNYGTRCSFIHRV  115 (189)
Q Consensus        52 KT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~--~G~C~~G~~CrFaH~~  115 (189)
                      ....|++|...|.|..|..|.|.|..-.         -....|..|..  .+.|++|..|+|-|..
T Consensus       133 ~~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~  189 (285)
T COG5084         133 QGPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFCPLGASCKFSHTL  189 (285)
T ss_pred             cCCCcccccccceeccCCCCCccccCcc---------cccccccccCcccccccCCCCcccccccc
Confidence            4778999977999999999999997521         23456776653  8999999999999993

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.44  E-value=0.0091  Score=32.29  Aligned_cols=18  Identities=33%  Similarity=0.874  Sum_probs=10.8

Q ss_pred             ccccccCcccCCCCCCccccc
Q psy10639         55 LCRSLEGYRPCQYGERCRFAH   75 (189)
Q Consensus        55 lCr~f~~~G~C~~Gd~C~FaH   75 (189)
                      +|++|. .  |++|++|.|+|
T Consensus         1 ~Ck~~~-~--C~~~~~C~f~H   18 (19)
T PF14608_consen    1 PCKFGP-N--CTNGDNCPFSH   18 (19)
T ss_pred             CCcCcC-C--CCCCCcCccCC
Confidence            366554 1  66666666666

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.05  E-value=0.008  Score=51.35  Aligned_cols=31  Identities=23%  Similarity=0.750  Sum_probs=27.5

Q ss_pred             CccccccccccCcccCCCCCCccccccCccc
Q psy10639         50 RYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus        50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      .+...+|+.|..+|.|-|||.|.|.|+.+++
T Consensus       138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             ecCcccccchhhcccccCCchhhhhhhhhhh
Confidence            3667899999999999999999999998864

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=94.78  E-value=0.022  Score=30.80  Aligned_cols=19  Identities=32%  Similarity=0.723  Sum_probs=15.7

Q ss_pred             cccccccccccCCCCCCCCCCC
Q psy10639         93 LCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        93 lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      +|+++.   .|.+|+.|.|+|.
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            488664   4999999999995

>KOG2185|consensus

Probab=94.74  E-value=0.012  Score=54.70  Aligned_cols=30  Identities=30%  Similarity=0.812  Sum_probs=25.8

Q ss_pred             CCCccccccccccCcccCCCCCCccccccCc
Q psy10639         48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVE   78 (189)
Q Consensus        48 ~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~   78 (189)
                      +....-.+|++|+ .|.|+||++|+|.||..
T Consensus       135 PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  135 PTHESMKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             CcchhhccchHhh-ccccccCcccccccCcc
Confidence            4444568999999 99999999999999875

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.03  E-value=0.017  Score=49.44  Aligned_cols=30  Identities=30%  Similarity=0.984  Sum_probs=25.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCcCC
Q psy10639         91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDP  122 (189)
Q Consensus        91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~  122 (189)
                      ..+|+.|-.+|+|-||+.|.|+|.  .++...
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~--R~D~Kt  170 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHD--RSDFKT  170 (259)
T ss_pred             cccccchhhcccccCCchhhhhhh--hhhhhc
Confidence            357999999999999999999999  554433

>KOG2185|consensus

Probab=92.78  E-value=0.045  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.885  Sum_probs=22.5

Q ss_pred             ccccccccccccccCCCCCCCCCCCC
Q psy10639         90 RTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        90 kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      ...+|++|+ .|.|+||.+|||.|+.
T Consensus       139 sMkpC~ffL-eg~CRF~enCRfSHG~  163 (486)
T KOG2185|consen  139 SMKPCKFFL-EGRCRFGENCRFSHGL  163 (486)
T ss_pred             hhccchHhh-ccccccCcccccccCc
Confidence            357999996 9999999999999996

>KOG1813|consensus

Probab=91.83  E-value=0.051  Score=48.67  Aligned_cols=31  Identities=26%  Similarity=0.844  Sum_probs=28.5

Q ss_pred             CccccccccccCcccCCCCCCccccccCccc
Q psy10639         50 RYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus        50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      .|...+|+.|..+|.|-||+.|.|.|+..++
T Consensus       183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            4778999999999999999999999999876

>KOG4791|consensus

Probab=91.37  E-value=0.11  Score=49.60  Aligned_cols=54  Identities=22%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             cccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        52 KT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      ....|++|+..-.|+.  .|.|.|..-.+.       ....+|.++.+...|.. ++|-|-|..
T Consensus        31 n~t~C~~w~~~~~C~k--~C~YRHSe~~~k-------r~e~~CYwe~~p~gC~k-~~CgfRH~~   84 (667)
T KOG4791|consen   31 NETVCTLWQEGRCCRK--VCRYRHSEIDKK-------RSEIPCYWENQPTGCQK-LNCGFRHNR   84 (667)
T ss_pred             CcchhhhhhhcCcccc--cccchhhHHhhh-------cCcccceeecCCCccCC-CccccccCC
Confidence            4568999996666766  799999765542       23568986654444986 999999963

>KOG2494|consensus

Probab=90.12  E-value=0.19  Score=45.59  Aligned_cols=86  Identities=21%  Similarity=0.460  Sum_probs=55.0

Q ss_pred             Ccccccccc-chhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCc----
Q psy10639         10 PARFRLDQK-CQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV----   84 (189)
Q Consensus        10 ~g~c~~g~~-C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~----   84 (189)
                      .+-|+.|+. |.|.   |.+  ..             ..-.+-+...|..++ +|.|.+ |+|+|+|...+++.-.    
T Consensus        45 rn~C~R~d~~Ckfa---HP~--~~-------------~~V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~ing  104 (331)
T KOG2494|consen   45 RNTCSRGDRECKFA---HPP--KN-------------CQVSNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKING  104 (331)
T ss_pred             hccccCCCcccccc---CCC--CC-------------CCccCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhhcc
Confidence            467888888 9764   422  11             122234568999999 899988 6699999988765311    


Q ss_pred             c---------------cccc-cccccc--ccccccccCCC-CCCCCCCCCC
Q psy10639         85 R---------------HYRY-RTRLCR--NYHHNGVCNYG-TRCSFIHRVP  116 (189)
Q Consensus        85 ~---------------~p~~-kt~lCk--~f~~~G~C~~G-~~CrFaH~~~  116 (189)
                      +               .... .+.+|+  .| ..+-|.-| ..|+|.+-.+
T Consensus       105 rn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f-~~~~~~~g~~~~s~~~y~~  154 (331)
T KOG2494|consen  105 RNNLILQKTAAAMLAQQMQGPGTPICSVPMF-ATGPCLGGNTACSYWPYLP  154 (331)
T ss_pred             cccHHHHHHHHhhhcccccCCCccccccccc-cccccccCCCccccccccC
Confidence            0               0112 456777  44 46667766 4588887754

>KOG4791|consensus

Probab=89.93  E-value=0.081  Score=50.38  Aligned_cols=51  Identities=25%  Similarity=0.643  Sum_probs=40.2

Q ss_pred             cccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         54 ELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        54 ~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      .-|.+|+ .-.|++++.|.|.|....+..        ...|.+|...--|.  ..|+|-|..
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~--k~C~YRHSe   54 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCR--KVCRYRHSE   54 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCccc--ccccchhhH
Confidence            4577787 789999999999998887632        35799998664455  399999995

>KOG1039|consensus

Probab=89.91  E-value=0.12  Score=47.12  Aligned_cols=25  Identities=32%  Similarity=1.042  Sum_probs=20.2

Q ss_pred             ccccccccccccCCCCCCCCCCCCCC
Q psy10639         92 RLCRNYHHNGVCNYGTRCSFIHRVPG  117 (189)
Q Consensus        92 ~lCk~f~~~G~C~~G~~CrFaH~~~~  117 (189)
                      .+|++| ..|+|.||+.|||.|..+.
T Consensus         9 tic~~~-~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYY-QKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhc-ccccccccceeeeeccCch
Confidence            688876 4888888888888888774

>KOG1039|consensus

Probab=88.59  E-value=0.17  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.926  Sum_probs=22.7

Q ss_pred             cccccccCcccCCCCCCccccccCc
Q psy10639         54 ELCRSLEGYRPCQYGERCRFAHSVE   78 (189)
Q Consensus        54 ~lCr~f~~~G~C~~Gd~C~FaH~~~   78 (189)
                      .+|++|+ .|.|+||+.|+|.|..-
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            8999999 99999999999999876

>KOG1813|consensus

Probab=86.75  E-value=0.19  Score=45.11  Aligned_cols=25  Identities=36%  Similarity=1.132  Sum_probs=22.9

Q ss_pred             cccccccccccccCCCCCCCCCCCC
Q psy10639         91 TRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        91 t~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      .-+|+.|-.+|+|-||+.|.|+|..
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r  210 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDR  210 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhh
Confidence            4589999999999999999999994

>KOG2333|consensus

Probab=83.14  E-value=0.54  Score=45.14  Aligned_cols=50  Identities=20%  Similarity=0.365  Sum_probs=34.9

Q ss_pred             CccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccc
Q psy10639         10 PARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAH   75 (189)
Q Consensus        10 ~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH   75 (189)
                      ...|.+|.+|-|.|-+...                +......-..-|..|...|.|+||-+|+|+-
T Consensus        87 ~~~C~f~d~Crf~HDi~ay----------------LatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   87 ISKCSFGDNCRFVHDIEAY----------------LATKAPDIGPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             CccCcccccccccccHHHH----------------HhccCcccCCccceeeccccCCccceeehhh
Confidence            3689999999887433211                1111112236799999999999999999974

>KOG2202|consensus

Probab=81.79  E-value=0.52  Score=41.47  Aligned_cols=30  Identities=20%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CccccccccccCcccCCCCCCccccccCcc
Q psy10639         50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE   79 (189)
Q Consensus        50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e   79 (189)
                      ..-.+-|.+|.+.|.|++|+.|.=.|...+
T Consensus        12 ekdKv~c~fy~k~gacR~gdrcsR~h~kpt   41 (260)
T KOG2202|consen   12 EKDKVNCSFYFKIGACRHGDRCSRLHEKPT   41 (260)
T ss_pred             cccccccchHHhhcccccccHHHHhhcccc
Confidence            344578999999999999999977775443

>KOG3702|consensus

Probab=80.89  E-value=2.4  Score=41.74  Aligned_cols=94  Identities=16%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             CCccccccccchhhhhcCCCCCCCCCCCCCcc-c---cccccCCCCccccccccccCcccCCCCCCccccccCccc----
Q psy10639          9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQE-S---DRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL----   80 (189)
Q Consensus         9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~-s---~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el----   80 (189)
                      ..-+|+|+..|...++.     ...|+.+..- +   .. -.....+-.+.|++=   ..|.. ..|.|.|+..-.    
T Consensus       543 ~l~~Cky~~~Ct~a~Ce-----~~HPtaa~~~~s~p~k~-fa~~~~ks~p~Ck~~---~kCta-sDC~~sH~~~~~pvq~  612 (681)
T KOG3702|consen  543 ILTRCKYGPACTSAECE-----FAHPTAAENAKSLPNKK-FASKCLKSHPGCKFG---KKCTA-SDCNYSHAGRRIPVQP  612 (681)
T ss_pred             eeccccCCCcCCchhhh-----hcCCcchhhhhcccccc-ccccceecccccccc---ccccc-ccCcccccCCCCCCcc
Confidence            34579999999765542     2334333110 0   00 011222333444422   23444 348899987653    


Q ss_pred             CCCcc-cc-ccccccccccccccccCCCCCCCCCCCCC
Q psy10639         81 RPPVR-HY-RYRTRLCRNYHHNGVCNYGTRCSFIHRVP  116 (189)
Q Consensus        81 r~~~~-~p-~~kt~lCk~f~~~G~C~~G~~CrFaH~~~  116 (189)
                      ..++. .+ .....+|+|+   +.|.+ ..|+|.|...
T Consensus       613 t~ip~~~~~~ti~~~CrY~---pnCrn-m~C~F~HPk~  646 (681)
T KOG3702|consen  613 TRIPPPFPGGTIRGLCRYR---PNCRN-MQCKFYHPKT  646 (681)
T ss_pred             ccCCCCCCCCCccccceec---cCcCC-ccccccCCcc
Confidence            11111 11 2245677753   56765 6788888843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		3e-15
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		1e-12

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 43/67 (64%)
Query: 49  IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTR 108
            RYKTELCR  E    C+YGE+C+FAH   ELR   RH +Y+T LCR +H  G C YG R
Sbjct: 2   TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPR 61
Query: 109 CSFIHRV 115
           C FIH  
Sbjct: 62  CHFIHNA 68

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 45  LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCN 104
           +    RYKTELCR+      C+YG +C+FAH + ELR   RH +Y+T LC  +   G C 
Sbjct: 4   MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCP 63
Query: 105 YGTRCSFIH 113
           YG+RC FIH
Sbjct: 64  YGSRCHFIH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-19
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-06
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	7e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	8e-06
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 76.1 bits (187), Expect = 5e-19
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 48  PIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
             RYKTELCR+      C+YG +C+FAH + ELR   RH +Y+T LC  +   G C YG+
Sbjct: 7   SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 108 RCSFIH 113
           RC FIH
Sbjct: 67  RCHFIH 72

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 83  PVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
                RY+T LCR Y  +G C YG +C F H
Sbjct: 4   MTTSSRYKTELCRTYSESGRCRYGAKCQFAH 34

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 39 QESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
              R      +YKTELC   +    C YG RC F H+  E
Sbjct: 36 LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 48  PIRYKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYG 106
            +  K ELC+  + G+  C   E C + H                  C+ YH  G C  G
Sbjct: 8   ELPKKRELCKFYITGF--CARAENCPYMHGDFP--------------CKLYHTTGNCING 51

Query: 107 TRCSFIHRVPGEEVDPVKKYR 127
             C F H    EE   +    
Sbjct: 52  DDCMFSHDPLTEETRELLDKM 72

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 51  YKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
            KT +C+  L G   C+ G++C F H  +  +            C  Y   G C+    C
Sbjct: 14  EKTVVCKHWLRGL--CKKGDQCEFLHEYDMTKMSE---------CYFYSKFGECS-NKEC 61

Query: 110 SFIHRVPGEEV 120
            F+H  P  ++
Sbjct: 62  PFLHIDPESKI 72

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 51  YKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
            KT +C+  L G   C+ G++C F H  +  + P          C  Y   G C+    C
Sbjct: 8   EKTVVCKHWLRGL--CKKGDQCEFLHEYDMTKMPE---------CYFYSKFGECS-NKEC 55

Query: 110 SFIHRVPGEEVDPVKKY 126
            F+H  P  ++      
Sbjct: 56  PFLHIDPESKIKDCPWS 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.82
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.44
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.43
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.34
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.06
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.97
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.8
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.73
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.6
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.38
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.14
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.11
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.82
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.65
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.34
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.24
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.1
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	96.51
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.02
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	95.59
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	95.19
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	91.27
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.59
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.57
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	83.09

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.82  E-value=3.8e-21  Score=136.03  Aligned_cols=70  Identities=47%  Similarity=1.019  Sum_probs=35.7

Q ss_pred             cCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        46 ~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      +.+.+|||+||++|+..|.|++|++|+|+|+.++++....++.+++.+|+.|.+.|.|++|++|+|+|+.
T Consensus         5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~   74 (77)
T 1m9o_A            5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP   74 (77)
T ss_dssp             CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------
T ss_pred             CCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence            4567899999999987999999999999999999988777888999999999999999999999999994

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4.6e-14  Score=100.57  Aligned_cols=62  Identities=26%  Similarity=0.584  Sum_probs=52.6

Q ss_pred             CCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCC
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEE  119 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee  119 (189)
                      ....+|+++|++|+ .|.|++|++|.|+|+....         ++.+|++|++.|.|. |++|+|+|..+...
T Consensus         4 ~~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            4 GSSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             CCSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CCCCCcceeCHhHc-cCcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            44568999999999 6999999999999998753         456899998669999 89999999965443

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.43  E-value=4.2e-14  Score=105.38  Aligned_cols=54  Identities=31%  Similarity=0.625  Sum_probs=48.7

Q ss_pred             CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCC
Q psy10639         49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPG  117 (189)
Q Consensus        49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~  117 (189)
                      ..+|+++|++|+ .|.|++|++|+|+|+              +.+|++|++.|.|++|++|+|+|....
T Consensus         9 ~~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A            9 LPKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             CSCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            458999999997 899999999999998              458999988999999999999999543

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.34  E-value=2.2e-13  Score=96.23  Aligned_cols=61  Identities=26%  Similarity=0.568  Sum_probs=51.5

Q ss_pred             CCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCC
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGE  118 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~e  118 (189)
                      +....++++|++|+ .|.|++|++|.|+|+.+..         ++.+|++|+..|.|.+ ++|+|.|..+..
T Consensus        10 ~~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           10 HMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             SSSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             cCCCCcCeeCHHHh-cCCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            44568899999999 6999999999999997643         4678999986699999 999999996543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.13  E-value=1.6e-11  Score=85.98  Aligned_cols=59  Identities=29%  Similarity=0.701  Sum_probs=49.3

Q ss_pred             ccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCC
Q psy10639         51 YKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      .|.++|++|+ .|.|.+|+ .|.|+|+.++...  .....++.+|++|. .|.|.+| .|+|+|.
T Consensus         4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~--~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~   63 (70)
T 3d2q_A            4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMI--DTNDNTVTVCMDYI-KGRCSRE-KCKYFHP   63 (70)
T ss_dssp             CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCC--BTTTTEEEBCHHHH-TTCCCCT-TCCSBCC
T ss_pred             ccchhCHHHh-cCCCCCCCCCCCCccCcccccc--cccCCcceeccccC-cCCCCCC-CcCeeCC
Confidence            5778999998 89999999 5999999876522  22235788999997 6999999 9999998

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.06  E-value=2.5e-11  Score=85.29  Aligned_cols=60  Identities=33%  Similarity=0.682  Sum_probs=18.2

Q ss_pred             CCCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcc
Q psy10639          6 NWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE   79 (189)
Q Consensus         6 ~~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e   79 (189)
                      .|...|.|.+|.+|+|.   |+..+++.+           ....++||++|++|...|.|++|++|+|+|+..|
T Consensus        17 ~f~~~G~C~~G~~C~f~---H~~~e~~~~-----------~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           17 TYSESGRCRYGAKCQFA---HGLGELRQA-----------NRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             GGGGTSCCTTTTTCSSC---SSSCCGGGT-----------C---------------------------------
T ss_pred             HhhhCCCcCCCCCccCC---CCChhhccc-----------cccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            46678999999999986   444444322           2345789999998888999999999999999875

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=6.1e-11  Score=88.37  Aligned_cols=62  Identities=29%  Similarity=0.633  Sum_probs=50.9

Q ss_pred             CCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         49 IRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        49 ~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      ...|.++|++|+ .|.|.+|+ .|+|+|+.++...  .....++.+|.+|. .|.|.+| .|+|.|..
T Consensus        16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~--~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~   78 (98)
T 2e5s_A           16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMI--DTSDNTVTVCMDYI-KGRCMRE-KCKYFHPP   78 (98)
T ss_dssp             CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSC--CTTTCEEEBCHHHH-HTCCCCT-TCCSBCCC
T ss_pred             ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhccc--cccCCccccchhhc-cCCCCCC-CcCccCCh
Confidence            345789999999 79999999 7999999987532  11235678999996 7999999 99999994

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.80  E-value=1.8e-09  Score=78.26  Aligned_cols=62  Identities=24%  Similarity=0.551  Sum_probs=50.3

Q ss_pred             CCCCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      +..+.+.++|+.|+ .|.|..|| .|+|+|....+..    ...+..+|.+|. .|.|.++ .|+|.|..
T Consensus         3 ~~~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~----~~~~~~vC~dfl-kG~C~r~-~C~y~H~~   65 (83)
T 3d2n_A            3 DTKWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQV----ENGRVIACFDSL-KGRCSRE-NCKYLHPP   65 (83)
T ss_dssp             -CGGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCE----ETTEEECCHHHH-TTCCCCS-SCSSCCCC
T ss_pred             CcccccchhcHHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeehhHhh-hccccCC-CcceeCCh
Confidence            45578899999999 69999997 9999999875421    123568999996 7999998 99999994

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=6.2e-10  Score=78.27  Aligned_cols=47  Identities=23%  Similarity=0.392  Sum_probs=36.8

Q ss_pred             CccccccccccCcccCCCCCCccccccCcccCCCc-ccccccccccccc
Q psy10639         50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV-RHYRYRTRLCRNY   97 (189)
Q Consensus        50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~-~~p~~kt~lCk~f   97 (189)
                      ..|++||++|+ .|.|+||++|+|||+.+||+... +....++++++..
T Consensus        17 ~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar   64 (69)
T 2d9m_A           17 TGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS   64 (69)
T ss_dssp             CSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred             CCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence            34679999996 89999999999999999998753 3334567777643

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.60  E-value=1.5e-08  Score=74.38  Aligned_cols=62  Identities=24%  Similarity=0.569  Sum_probs=50.8

Q ss_pred             CCCCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      +..+.+.++|+.|+ .|.|..|+ .|+|+|........    ..+...|..|+ .|.|.++ .|+|.|..
T Consensus        11 ~~~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~dfl-kG~C~r~-~Cky~H~~   73 (89)
T 2rpp_A           11 DTKWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPP   73 (89)
T ss_dssp             SCSSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHHH-HTCCCCT-TCCSBCCC
T ss_pred             CCCcchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeeehhhh-hCcCCCC-CcceecCH
Confidence            45567889999999 69999998 99999988753211    23578999996 8999998 99999994

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=1.1e-07  Score=67.37  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             ccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccc
Q psy10639         11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYR   90 (189)
Q Consensus        11 g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~k   90 (189)
                      |.|..|..|.|+|.   ..                    ..++.+|++|+..|.|. |++|.|+|...+.         +
T Consensus        19 G~C~~G~~C~fsH~---~~--------------------~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~---------~   65 (77)
T 2d9n_A           19 GLCKKGDQCEFLHE---YD--------------------MTKMPECYFYSKFGECS-NKECPFLHIDPES---------K   65 (77)
T ss_dssp             TCCSCTTSSSSBCS---CC--------------------TTTSCBCHHHHHTCCCC-CSSCSSBCCCTTS---------S
T ss_pred             CcCCCCCCCCCccc---cc--------------------cCcCCCCcccCCCCccC-CCCeeccCCCccc---------c
Confidence            99999999998732   10                    01456899999559999 9999999987654         5


Q ss_pred             cccccccc
Q psy10639         91 TRLCRNYH   98 (189)
Q Consensus        91 t~lCk~f~   98 (189)
                      +.+|+.|.
T Consensus        66 ~~~C~~f~   73 (77)
T 2d9n_A           66 IKDCPWSG   73 (77)
T ss_dssp             CSSSSCCT
T ss_pred             CCCCcccc
Confidence            78999986

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=1.7e-07  Score=65.84  Aligned_cols=34  Identities=29%  Similarity=0.593  Sum_probs=29.5

Q ss_pred             cccccccccccccccccCCCCCCCCCCCCCCCCcCCC
Q psy10639         87 YRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPV  123 (189)
Q Consensus        87 p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~  123 (189)
                      |..++++|+.| ..|.|+||++|.|||+  .+||+..
T Consensus        16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG--~~ELr~~   49 (69)
T 2d9m_A           16 PTGYFSICDRY-MNGTCPEGNSCKFAHG--NAELHEW   49 (69)
T ss_dssp             CCSCCSBCHHH-HHSCCSSCSSCSSBSS--HHHHHHH
T ss_pred             CCCCcccCccc-CcCCCCCCCccCCcCC--HHHHhhH
Confidence            44577999999 6899999999999999  8888774

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.11  E-value=8.2e-07  Score=65.77  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=36.2

Q ss_pred             CCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCc
Q psy10639          9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVE   78 (189)
Q Consensus         9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~   78 (189)
                      ..|.|.+|.+|.|.   |.                         +.+|++|...|.|++|++|+|+|...
T Consensus        20 ~~G~C~~G~~C~f~---H~-------------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           20 ITGFCARAENCPYM---HG-------------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             TTTCCSCSTTCSSB---SS-------------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             ccCcCCCCCCCCCC---CC-------------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            47999999999876   31                         68899996689999999999999865

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.82  E-value=5.3e-06  Score=57.62  Aligned_cols=55  Identities=13%  Similarity=0.387  Sum_probs=41.4

Q ss_pred             CCccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccC
Q psy10639          9 HPARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR   81 (189)
Q Consensus         9 ~~g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr   81 (189)
                      ..|.|..|. .|.|+   |.+.+.             .+.....++.+|++|+ .|.|.+| .|.|+|...+|+
T Consensus        13 ~~G~C~rg~~~C~f~---H~~~~~-------------~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A           13 QRGNCNRGENDCRFA---HPADST-------------MIDTNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             HTTCCSSCTTTCSSB---CCCTTS-------------CCBTTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred             hcCCCCCCCCCCCCc---cCcccc-------------cccccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence            359999999 49987   422222             1233457899999999 7999999 899999987763

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.65  E-value=9e-06  Score=56.93  Aligned_cols=49  Identities=18%  Similarity=0.392  Sum_probs=36.6

Q ss_pred             CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639          7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus         7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      |+. |.|..|..|.|++.   ..                    ..++.+|++|+..|.|.+ ++|.|.|...+.
T Consensus        22 fl~-G~C~~G~~C~fsH~---~~--------------------~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           22 WLR-GLCKKGDQCEFLHE---YD--------------------MTKMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             HHT-TCCCCGGGSSSBCS---CC--------------------TTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             Hhc-CCCCCCCCCCCccc---cc--------------------cccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            344 99999999998732   10                    015779999995499999 999999986543

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.34  E-value=4.9e-05  Score=56.24  Aligned_cols=52  Identities=13%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             ccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639         11 ARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus        11 g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      |+|..|. .|.|.|.   +....             +.....++.+|++|+ .|.|.+| +|+|.|...++
T Consensus        29 G~C~rgd~~C~FsH~---~~~~~-------------~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           29 GNCARGETDCRFAHP---ADSTM-------------IDTSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             TCCSSHHHHCSSBCC---SSCCS-------------CCTTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred             CcCCCCCCCCCCcCC---chhcc-------------ccccCCccccchhhc-cCCCCCC-CcCccCChHHH
Confidence            9999998 7998733   22221             233457899999999 7999999 89999998766

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.24  E-value=5.7e-05  Score=49.66  Aligned_cols=27  Identities=30%  Similarity=0.726  Sum_probs=21.1

Q ss_pred             cccccccccccccccCCCCCCCCCCCC
Q psy10639         89 YRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        89 ~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      .++.+|..|.+.|+|++|.+|.+.|++
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi   44 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDI   44 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccC
Confidence            456778888888888888888888874

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.10  E-value=9.7e-05  Score=48.56  Aligned_cols=29  Identities=24%  Similarity=0.647  Sum_probs=27.1

Q ss_pred             ccccccccccCcccCCCCCCccccccCcc
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAHSVEE   79 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~e   79 (189)
                      .++.+|..|...|.|++|.+|.+.|+++-
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            68999999999999999999999999873

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=96.51  E-value=0.00045  Score=49.62  Aligned_cols=53  Identities=11%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             CCCCccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639          7 WRHPARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus         7 ~~~~g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      |+. |.|..+. .|.|+|.   +..+               .-...+..+|.+|+ .|.|..+ .|.|.|....+
T Consensus        15 Flr-G~C~r~d~~C~f~H~---~~~~---------------~~~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A           15 FQR-GTCSRPDTECKFAHP---SKSC---------------QVENGRVIACFDSL-KGRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             GGG-TCCCSCTTTCSSBCC---CTTC---------------CEETTEEECCHHHH-TTCCCCS-SCSSCCCCHHH
T ss_pred             Hhc-CCCCCCCCCCCCcCC---Cccc---------------cccCCceeehhHhh-hccccCC-CcceeCChHHH
Confidence            455 9999995 9988633   2111               11135789999999 8999998 89999998765

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.02  E-value=0.0021  Score=54.16  Aligned_cols=27  Identities=22%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             cccccccccCcccCC----CCCCccccccCcc
Q psy10639         52 KTELCRSLEGYRPCQ----YGERCRFAHSVEE   79 (189)
Q Consensus        52 KT~lCr~f~~~G~C~----~Gd~C~FaH~~~e   79 (189)
                      .=.|||+|. .|.|.    .+..|+|.|++..
T Consensus        88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s  118 (229)
T 3u9g_A           88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLS  118 (229)
T ss_dssp             SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTC
T ss_pred             ceeechhhh-cCcCCcccCCCCCcccccccCc
Confidence            446899999 79993    3577999998864

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=95.59  E-value=0.0064  Score=51.25  Aligned_cols=51  Identities=25%  Similarity=0.681  Sum_probs=42.1

Q ss_pred             cCCCCccccccccccC---cccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639         46 LDPIRYKTELCRSLEG---YRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV  115 (189)
Q Consensus        46 ~~~~kyKT~lCr~f~~---~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~  115 (189)
                      ++....=.++|.+|..   .|.|.+++.|.-.|                 +|.+|. .|.|.| ..|.-.|+.
T Consensus       144 QnDp~lLPeiC~~YkG~g~~g~C~~~~~C~kLH-----------------IC~~Fl-~G~C~f-~~CkRsH~~  197 (229)
T 3u9g_A          144 QSDPFFLPEICKSYKGEGRKQTCGQPQPCERLH-----------------ICEHFT-RGNCSY-LNCLRSHNL  197 (229)
T ss_dssp             TTCGGGSCCBCTTCCCSSSCCSCSSSSCCCSBC-----------------SCHHHH-TTCCCC-SSCSSCCCT
T ss_pred             cCCCccCchHHHHhCCCCCCCcCCCCCCCccee-----------------ccchhh-cCCcCC-CCccCccCc
Confidence            3455566899999932   26999999999988                 698885 999999 899999995

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=95.19  E-value=0.0056  Score=44.48  Aligned_cols=50  Identities=14%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             ccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639         11 ARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL   80 (189)
Q Consensus        11 g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el   80 (189)
                      |.|+.+. .|.|+|.   +...             .+.  .-+..+|..|+ .|.|..+ .|+|.|....+
T Consensus        26 G~C~r~d~~CrfsH~---~~~~-------------~v~--~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           26 GTCSRSDEECKFAHP---PKSC-------------QVE--NGRVIACFDSL-KGRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             TCCCCCTTTSSSBCC---CSSS-------------CCB--TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred             CCCCCCCCCCCCcCC---Cccc-------------ccc--CCceeeehhhh-hCcCCCC-CcceecCHHHH
Confidence            8899997 9988633   1111             011  33689999999 8999998 79999988765

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=91.27  E-value=0.028  Score=40.13  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=15.5

Q ss_pred             cccccccccCcccCCCCCCccccccC
Q psy10639         52 KTELCRSLEGYRPCQYGERCRFAHSV   77 (189)
Q Consensus        52 KT~lCr~f~~~G~C~~Gd~C~FaH~~   77 (189)
                      -.++|++|.   .|.. +.|.|.|..
T Consensus         8 ~~e~CKf~~---~Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            8 SLEQCKFGT---HCTN-KRCKYRHAR   29 (80)
Confidence            356787776   4777 778888854

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.59  E-value=0.023  Score=47.80  Aligned_cols=28  Identities=32%  Similarity=0.955  Sum_probs=23.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCC
Q psy10639         91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEE  119 (189)
Q Consensus        91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee  119 (189)
                      ..+|.+|. .|.|.+|..|.|.|..|.++
T Consensus        70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt~~   97 (240)
T 3u1l_A           70 LFFCLFFA-KGMCCLGPKCEYLHHIPDEE   97 (240)
T ss_dssp             CSBCHHHH-TTCCSCGGGCSSBBSCCCHH
T ss_pred             CeEcCccc-cCCCCCCCCCCccCCCCCcc
Confidence            35899886 69999999999999976643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.57  E-value=0.037  Score=46.52  Aligned_cols=25  Identities=20%  Similarity=0.586  Sum_probs=22.2

Q ss_pred             cccccccccCcccCCCCCCccccccC
Q psy10639         52 KTELCRSLEGYRPCQYGERCRFAHSV   77 (189)
Q Consensus        52 KT~lCr~f~~~G~C~~Gd~C~FaH~~   77 (189)
                      ...+|.+|. .|.|++|+.|.|.|..
T Consensus        69 ~~~~C~ffa-kG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           69 QLFFCLFFA-KGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             CCSBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred             CCeEcCccc-cCCCCCCCCCCccCCC
Confidence            356999999 6999999999999965

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=83.09  E-value=0.26  Score=35.05  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=31.3

Q ss_pred             ccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCC
Q psy10639         53 TELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        53 T~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      ..+|+++.   .|.. ..|.|+|-.             .+.|+++.   .|.+ ..|.|.|.
T Consensus        31 ~~~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp   71 (80)
T 2lhn_A           31 HIMCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHP   71 (80)
Confidence            45788775   5887 669999953             24698653   8988 89999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	5e-11
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-07
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	9e-11
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	9e-08
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	6e-09
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	8e-08

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (128), Expect = 5e-11
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPP 83
          RYKTELCR+      C+YG +C+FAH + ELR  
Sbjct: 6  RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (105), Expect = 1e-07
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 88  RYRTRLCRNYHHNGVCNYGTRCSFIH 113
           RY+T LCR Y  +G C YG +C F H
Sbjct: 6   RYKTELCRTYSESGRCRYGAKCQFAH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 9e-11
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRP 82
          RYKTELCR  E    C+YGE+C+FAH   ELR 
Sbjct: 3  RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 9e-08
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 88  RYRTRLCRNYHHNGVCNYGTRCSFIH 113
           RY+T LCR +  +G C YG +C F H
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAH 28

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (113), Expect = 6e-09
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 85  RHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
           RH +Y+T LCR +H  G C YG RC FIH
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIH 30

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 8e-08
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
          +YKTELCR+      C YG RC F H+ +E
Sbjct: 5  KYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.35
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.35
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.25
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.11
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.06
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.04
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.65
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.38
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.13
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	95.68
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.5
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	92.67

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.7e-13  Score=85.51  Aligned_cols=37  Identities=49%  Similarity=0.990  Sum_probs=33.3

Q ss_pred             CCCCccccccccccCcccCCCCCCccccccCcccCCC
Q psy10639         47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPP   83 (189)
Q Consensus        47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~   83 (189)
                      .+.+|||+||++|...|.|++|++|+|||+.+|||.+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            5678999999999988999999999999999999764

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.8e-14  Score=86.23  Aligned_cols=35  Identities=57%  Similarity=1.115  Sum_probs=31.5

Q ss_pred             CCccccccccccCcccCCCCCCccccccCcccCCC
Q psy10639         49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPP   83 (189)
Q Consensus        49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~   83 (189)
                      .+|||+||++|...|.|++|++|+|||+.+|||.+
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   36 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL   36 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccCC
Confidence            58999999999878999999999999999999753

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.7e-13  Score=81.26  Aligned_cols=32  Identities=47%  Similarity=0.990  Sum_probs=24.1

Q ss_pred             CCCccccccccccCcccCCCCCCccccccCcc
Q psy10639         48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVEE   79 (189)
Q Consensus        48 ~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e   79 (189)
                      ..+|||+||++|...|.|+||++|+|||+.+|
T Consensus         3 hpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           3 HPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            45678888888876777888888888887764

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.9e-12  Score=76.65  Aligned_cols=30  Identities=57%  Similarity=1.303  Sum_probs=28.6

Q ss_pred             cccccccccccccccccccCCCCCCCCCCC
Q psy10639         85 RHYRYRTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        85 ~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      ++|+|||++|+.|...|.|+||++|.|||+
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg   31 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHN   31 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCC
Confidence            468899999999999999999999999999

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.5e-11  Score=74.79  Aligned_cols=36  Identities=42%  Similarity=0.947  Sum_probs=32.0

Q ss_pred             ccccccccccccccccccCCCCCCCCCCCCCCCCcCCC
Q psy10639         86 HYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPV  123 (189)
Q Consensus        86 ~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~  123 (189)
                      ..+|||++|+.|...|.|+||++|.|||+  .+||+.+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg--~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHG--LGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSS--SCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCC--HHHhcCC
Confidence            35799999999999999999999999999  7887653

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=9.1e-12  Score=75.88  Aligned_cols=35  Identities=40%  Similarity=0.986  Sum_probs=31.5

Q ss_pred             cccccccccccccccccCCCCCCCCCCCCCCCCcCCC
Q psy10639         87 YRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPV  123 (189)
Q Consensus        87 p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~  123 (189)
                      .+|||++|++|...|.|+||++|.|||+  .+||+++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg--~~ELr~~   36 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHG--FHELRSL   36 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSS--GGGCCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCC--HHHccCC
Confidence            3699999999998999999999999999  8888763

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=45.60  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=18.9

Q ss_pred             ccccccccccCcccCCCCCCcccccc
Q psy10639         51 YKTELCRSLEGYRPCQYGERCRFAHS   76 (189)
Q Consensus        51 yKT~lCr~f~~~G~C~~Gd~C~FaH~   76 (189)
                      .|.++|++|. .|.|..|++|.|.|+
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccC
Confidence            4567788777 778888888887775

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.4e-05  Score=43.56  Aligned_cols=24  Identities=29%  Similarity=0.908  Sum_probs=21.9

Q ss_pred             ccccccccccccccCCCCCCCCCCC
Q psy10639         90 RTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        90 kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      |..+|++|. .|+|..|++|.|.|+
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccC
Confidence            567999886 999999999999997

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=2.7e-05  Score=50.70  Aligned_cols=30  Identities=37%  Similarity=0.701  Sum_probs=25.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCcCC
Q psy10639         93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDP  122 (189)
Q Consensus        93 lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~  122 (189)
                      +|++|++++.|-.|+.|+|.|..-.++.+.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pLt~~t~~   31 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPLTEETRE   31 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCCHHHHH
T ss_pred             CcceeecCCcccCCCcccccCCccCHHHHH
Confidence            799999999999999999999865555443

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.001  Score=39.36  Aligned_cols=25  Identities=32%  Similarity=0.772  Sum_probs=19.7

Q ss_pred             ccccccccccccccCCCCCCCCCCC
Q psy10639         90 RTRLCRNYHHNGVCNYGTRCSFIHR  114 (189)
Q Consensus        90 kt~lCk~f~~~G~C~~G~~CrFaH~  114 (189)
                      .+.+|..|.+.|+|+.|..|...|+
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCc
Confidence            4667888888888888888887776

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0017  Score=41.87  Aligned_cols=23  Identities=26%  Similarity=0.654  Sum_probs=20.6

Q ss_pred             ccccccCcccCCCCCCccccccC
Q psy10639         55 LCRSLEGYRPCQYGERCRFAHSV   77 (189)
Q Consensus        55 lCr~f~~~G~C~~Gd~C~FaH~~   77 (189)
                      .|++|..++.|-.|++|.|.|.+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999977799999999999954

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.011  Score=34.66  Aligned_cols=28  Identities=25%  Similarity=0.667  Sum_probs=25.2

Q ss_pred             CccccccccccCcccCCCCCCccccccC
Q psy10639         50 RYKTELCRSLEGYRPCQYGERCRFAHSV   77 (189)
Q Consensus        50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~   77 (189)
                      --.+.+|..|...|.|+.|.+|.-.|++
T Consensus        10 ~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          10 PHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCccchhhhhhhccccCCCCCCcccCcC
Confidence            3578999999999999999999999985