Psyllid ID: psy10640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLGKYY
Secondary Structure (PSIPRED)
ccccccHHHHHccccEEEEEEEEcccccccccccccHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHccccEEEEEEEEEEEccEEEEEEEccccEEEEEEcccEEEEEEcccccccccccHHHHHHccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHcccEEEEEEccHHHHccccHHHHHHHHHHHHHHHcccEEEEEccHcccccEEEEcHHHHcccccccEEEEEEEccccccccEEcccHHHHccccccccHHHHHHHHHcccEEEEEEEEEEEccEEEEEEEEccEEEEEEEEccEEEEEcHHHcccccccHHHHHHccccccccccHHHccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
mtgafpsiwrqrqgirqfttssslseAEKSQQHTITQRETIRTALAMGadrgihvevsgpeyetlqpfHISKILAKVAQEEKVDMVIVGKQkakkkpikkvspkdmgvdtgahieivtvedppvrqagsivpdvdtlaidddsnQTAQMTAAFLnwpqatfaskvdktdgeltVKREIDGGLETIKVKLPAVisadlrlnepryatlpnimKSQVFCGQIlnqmkvkppssvmeqlqlgkyy
Flexible Loop (DISEMBL)
mtgafpsiwrqrqgirqfttssslseaeksqqhtitQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIvgkqkakkkpikkvspkdmgvdtGAHIEivtvedppvrqaGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQAtfaskvdktdgeLTVKreidggletikvklpavisadlrlNEPRYATLPNIMKSQVFCGQILNQmkvkppssvmeqlqlgkyy
Low Complexity Region (SEG)
MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGkqkakkkpikkvspkDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLGKYY
Disordered region (IsUnstruct)
****************************************IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG*******************DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDD****TAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQ*******************
Disordered Region (DISOPRED)
***AFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQL****
Disordered Region (DISEMBL)
MTGAFPSIWRQRQGIRQF*******************RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG***************DMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLGKYY
Disordered Region (DISPRO)
****FPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLGKYY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLGKYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q5RFK0	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.514	2e-43
P38117	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.514	2e-43
Q68FU3	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.508	2e-43
Q6UAQ8	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.508	3e-43
Q2TBV3	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.502	6e-43
Q9DCW4	255	Electron transfer flavopr	yes	N/A	0.541	0.513	0.491	8e-43
Q54YZ4	250	Electron transfer flavopr	yes	N/A	0.582	0.564	0.456	8e-39
P53575	249	Electron transfer flavopr	yes	N/A	0.520	0.506	0.454	3e-35
Q9LSW8	251	Electron transfer flavopr	yes	N/A	0.520	0.501	0.455	4e-33
A2XQV4	253	Electron transfer flavopr	N/A	N/A	0.537	0.513	0.443	1e-32

>sp|Q5RFK0|ETFB_PONAB Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB PE=2 SV=3

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).
Pongo abelii (taxid: 9601)

>sp|P38117|ETFB_HUMAN Electron transfer flavoprotein subunit beta OS=Homo sapiens GN=ETFB PE=1 SV=3

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Homo sapiens (taxid: 9606)

>sp|Q68FU3|ETFB_RAT Electron transfer flavoprotein subunit beta OS=Rattus norvegicus GN=Etfb PE=2 SV=3

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV G E E L P  ++++LAK+A++EKVD++ +GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEVPGAEAENLGPLQVARVLAKLAEKEKVDLLFLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA  L+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGLLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     ++ V+REIDGGLETI++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETIRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Rattus norvegicus (taxid: 10116)

>sp|Q6UAQ8|ETFB_PIG Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB PE=2 SV=3

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV   E   L P  ++++LAK+AQ+EKVD+V++GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEVPAAEAHHLGPLQVARVLAKLAQKEKVDLVLLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Sus scrofa (taxid: 9823)

>sp|Q2TBV3|ETFB_BOVIN Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB PE=2 SV=3

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV   E   L P  ++++LAK+A++EKVD+V++GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEVPAAEANHLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKIKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Bos taurus (taxid: 9913)

>sp|Q9DCW4|ETFB_MOUSE Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb PE=1 SV=3

 Score =  173 bits (439), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVE+ G + E+L P  ++++LAK+A++EKVD++ +GKQ      
Sbjct: 72  QETIRTALAMGADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQ------ 125

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA  L+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGLLDWP 145

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Mus musculus (taxid: 10090)

>sp|Q54YZ4|ETFB_DICDI Electron transfer flavoprotein subunit beta OS=Dictyostelium discoideum GN=etfb PE=3 SV=1

 Score =  160 bits (405), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 113/197 (57%), Gaps = 56/197 (28%)

Query: 36  TQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKK 95
           T +ETIRTA+AMGAD+GIHVE +      LQP  ++K+L ++  +EK +++I+GKQ    
Sbjct: 69  TSQETIRTAIAMGADKGIHVETTA----ELQPLSVAKLLKELVDKEKPNLIILGKQ---- 120

Query: 96  KPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN 155
                                                     AIDDD NQTAQM A  LN
Sbjct: 121 ------------------------------------------AIDDDCNQTAQMLAGLLN 138

Query: 156 WPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQV 215
           WPQATFASKVD  D  + V REIDGGLET+ +KLPA+IS DLRLNEPRYA L NIMKS+ 
Sbjct: 139 WPQATFASKVDIKDDSVHVTREIDGGLETLSMKLPAIISCDLRLNEPRYAKLQNIMKSKK 198

Query: 216 FCGQILNQMKVKPPSSV 232
                  ++KV+ P S+
Sbjct: 199 A------ELKVETPESL 209

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Dictyostelium discoideum (taxid: 44689)

>sp|P53575|ETFB_BRAJA Electron transfer flavoprotein subunit beta OS=Bradyrhizobium japonicum (strain USDA 110) GN=etfB PE=3 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 103/176 (58%), Gaps = 50/176 (28%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ETIRT LAMGADRGI V+  G    T++P  ++KIL KVA+EE+  ++I+GKQ       
Sbjct: 70  ETIRTGLAMGADRGILVKAEG----TVEPLAVAKILKKVAEEEQPGLIILGKQ------- 118

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AIDDDSNQT QM AA L W Q
Sbjct: 119 ---------------------------------------AIDDDSNQTGQMLAALLGWSQ 139

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           ATFASK++    +  V RE+DGGL+T+K+K PA+++ DLRLNEPRYA+LPNIMK++
Sbjct: 140 ATFASKLEVEGSDFKVTREVDGGLQTVKLKGPAIVTTDLRLNEPRYASLPNIMKAK 195

The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

>sp|Q9LSW8|ETFB_ARATH Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 96/178 (53%), Gaps = 52/178 (29%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           +T+RT LAMGADRGIHVE +        P  I+KIL  +A  E   ++ +GKQ       
Sbjct: 70  DTLRTGLAMGADRGIHVETNS----IFLPLTIAKILKSLADVENPGLIFLGKQ------- 118

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AIDDD NQT QM AA L WPQ
Sbjct: 119 ---------------------------------------AIDDDCNQTGQMVAALLGWPQ 139

Query: 159 ATFASKV--DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           ATFASKV  DK     TV RE+DGGLET+ V LPAVI+ DLRLN+PRYA+LPNIMK++
Sbjct: 140 ATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDLRLNQPRYASLPNIMKAK 197

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). Involved in leucine catabolism and in phytol degradation.

Arabidopsis thaliana (taxid: 3702)

>sp|A2XQV4|ETFB_ORYSI Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. indica GN=ETFB PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 96/176 (54%), Gaps = 46/176 (26%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           +T+RTALAMGADR +HV         L P  ++KIL  +A +E   +VI+GKQ       
Sbjct: 70  DTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQ------- 122

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AIDDD NQT QM A  LNWPQ
Sbjct: 123 ---------------------------------------AIDDDCNQTGQMLAGLLNWPQ 143

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
            TFASKV     + TV+RE+DGG+ETI + LPAVI+ DLRLN+PRYATLPNIMK++
Sbjct: 144 GTFASKVILNKEKATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAK 199

The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
332376228	253	unknown [Dendroctonus ponderosae]	0.541	0.517	0.587	1e-49
114053151	253	electron-transfer-flavoprotein beta poly	0.528	0.505	0.586	1e-49
91087539	253	PREDICTED: similar to electron-transfer-	0.541	0.517	0.587	2e-49
307177606	253	Electron transfer flavoprotein subunit b	0.528	0.505	0.586	5e-49
357630902	253	electron-transfer-flavoprotein beta poly	0.524	0.501	0.601	5e-49
332025657	253	Electron transfer flavoprotein subunit b	0.528	0.505	0.568	3e-48
156543370	253	PREDICTED: electron transfer flavoprotei	0.528	0.505	0.580	4e-48
157108610	210	electron transfer flavoprotein beta-subu	0.528	0.609	0.586	9e-48
321477010	254	hypothetical protein DAPPUDRAFT_305476 [	0.528	0.503	0.568	1e-47
383847470	253	PREDICTED: electron transfer flavoprotei	0.528	0.505	0.557	1e-47

>gi|332376228|gb|AEE63254.1| unknown [Dendroctonus ponderosae]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 118/177 (66%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +E +RTALAMG D+GIHVEV+GPEYETLQP H+SKILAK+AQ EK+D+VIVGKQ      
Sbjct: 70  QEVLRTALAMGVDKGIHVEVTGPEYETLQPIHVSKILAKIAQNEKIDIVIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQTAQMTA  L+W 
Sbjct: 124 ----------------------------------------AIDDDCNQTAQMTAGVLDWS 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           QATFASKV+K D E+TV RE+DGGLE IK KLPAVISADLRLNEPRYATLPNIMK++
Sbjct: 144 QATFASKVEKGDNEITVTREVDGGLEVIKSKLPAVISADLRLNEPRYATLPNIMKAK 200

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114053151|ref|NP_001040123.1| electron-transfer-flavoprotein beta polypeptide [Bombyx mori] gi|87248127|gb|ABD36116.1| electron-transfer-flavoprotein beta polypeptide [Bombyx mori]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 118/174 (67%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ET+RTALAMGADR IHVEV+G EY+TLQP H++KILAK++Q+EK D+VIVGKQ      
Sbjct: 70  QETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDDSNQTAQMTAA L+WP
Sbjct: 124 ----------------------------------------AIDDDSNQTAQMTAALLDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
           Q TFASK++KTDG LT+ REIDGGLE IK K+PAV+SADLRLNEPRYATLPNIM
Sbjct: 144 QGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPNIM 197

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087539|ref|XP_970257.1| PREDICTED: similar to electron-transfer-flavoprotein beta polypeptide [Tribolium castaneum] gi|270009447|gb|EFA05895.1| hypothetical protein TcasGA2_TC008707 [Tribolium castaneum]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 119/177 (67%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           ++ IRTALAMG D+GIHVEVSG EYETLQP H+SKILAK+ ++EK DM+IVGKQ      
Sbjct: 70  QDVIRTALAMGVDKGIHVEVSGAEYETLQPIHVSKILAKLTEKEKADMIIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDDSNQTAQMTAA L+WP
Sbjct: 124 ----------------------------------------AIDDDSNQTAQMTAAALDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           QATFASK++  D E+TV RE+DGGLETIK KLPAVISADLRLNEPRYATLPNIMK++
Sbjct: 144 QATFASKIENGDKEITVTREVDGGLETIKCKLPAVISADLRLNEPRYATLPNIMKAK 200

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177606|gb|EFN66681.1| Electron transfer flavoprotein subunit beta [Camponotus floridanus]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 117/174 (67%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           ++TIRTALAMGADRGIHVE+SGPEY+TLQP H+SK+LAK+AQEEKVD+VI+GKQ      
Sbjct: 70  QDTIRTALAMGADRGIHVEISGPEYQTLQPIHVSKMLAKLAQEEKVDLVILGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD+NQTAQMTA  L+WP
Sbjct: 124 ----------------------------------------AIDDDNNQTAQMTAGVLDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
             TF SKV+  +GELTV REIDGGLE IK+K PAV+SADLRLNEPRYATLPNIM
Sbjct: 144 AGTFCSKVENNNGELTVTREIDGGLEVIKMKTPAVLSADLRLNEPRYATLPNIM 197

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357630902|gb|EHJ78721.1| electron-transfer-flavoprotein beta polypeptide [Danaus plexippus]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 116/173 (67%), Gaps = 46/173 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ET+RTALAMGADR IHVEV+G EYETLQP H++KILAK++Q+EK D+VIVGKQ      
Sbjct: 70  QETLRTALAMGADRAIHVEVAGAEYETLQPLHVAKILAKLSQDEKADLVIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDDSNQTAQMTAA L+WP
Sbjct: 124 ----------------------------------------AIDDDSNQTAQMTAAILDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNI 210
           Q TFASKV+K+D  LTV REIDGGLE IK KLPAVISADLRLNEPRYATLPNI
Sbjct: 144 QGTFASKVEKSDSGLTVTREIDGGLEVIKTKLPAVISADLRLNEPRYATLPNI 196

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025657|gb|EGI65819.1| Electron transfer flavoprotein subunit beta [Acromyrmex echinatior]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 116/174 (66%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           ++TIRTALAMG DRGIHVE+SGPEY+TLQP H+SKILAK+AQ+EKVD+VI+GKQ      
Sbjct: 70  QDTIRTALAMGVDRGIHVEISGPEYQTLQPVHVSKILAKLAQDEKVDLVILGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD+NQTAQMTA  L+WP
Sbjct: 124 ----------------------------------------AIDDDNNQTAQMTAGVLDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
             TF SK++  +GELT+ REIDGGLE IK+K PAV+SADLRLNEPRYATLPNIM
Sbjct: 144 SGTFCSKIENNNGELTITREIDGGLEIIKMKTPAVLSADLRLNEPRYATLPNIM 197

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543370|ref|XP_001608218.1| PREDICTED: electron transfer flavoprotein subunit beta-like [Nasonia vitripennis]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 113/174 (64%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ET+RTALAMGAD+GIHVE+SGPEYETLQP H+SKILAK+AQ+EK D+VIVGKQ      
Sbjct: 70  QETLRTALAMGADKGIHVEISGPEYETLQPIHVSKILAKLAQDEKADLVIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQTAQMT   L WP
Sbjct: 124 ----------------------------------------AIDDDCNQTAQMTGGVLGWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
            ATF SK++   GE+TV REIDGGLE IKVK PAV+SADLRLNEPRYATLPNIM
Sbjct: 144 TATFCSKIEHGKGEMTVTREIDGGLEVIKVKTPAVLSADLRLNEPRYATLPNIM 197

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108610|ref|XP_001650309.1| electron transfer flavoprotein beta-subunit [Aedes aegypti] gi|108879274|gb|EAT43499.1| AAEL005056-PA [Aedes aegypti]

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 115/174 (66%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +E +RTALAMGADRGIH+EVSG +YE LQP H+SKILAK+AQ+EK D+VI+GKQ      
Sbjct: 70  QEVLRTALAMGADRGIHIEVSGKDYELLQPIHVSKILAKLAQDEKADLVILGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQTAQMTAA L+WP
Sbjct: 124 ----------------------------------------AIDDDCNQTAQMTAALLDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
           QATFASKV+KT   LTV RE+DGGLETIK K+PAVISADLRLN PRYATLPNIM
Sbjct: 144 QATFASKVEKTGDGLTVVREVDGGLETIKTKVPAVISADLRLNTPRYATLPNIM 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477010|gb|EFX87969.1| hypothetical protein DAPPUDRAFT_305476 [Daphnia pulex]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 118/174 (67%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ET+RTALAMGADRGIHVEV+GP+++TLQP HISK+LA++A++E++D++IVGKQ      
Sbjct: 71  QETLRTALAMGADRGIHVEVAGPQFDTLQPLHISKMLAQLAKDEQIDLIIVGKQ------ 124

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQTAQMTAA L+WP
Sbjct: 125 ----------------------------------------AIDDDCNQTAQMTAALLDWP 144

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
           QAT ASK++  DG L V REIDGGLETIKVKLP V+SADLRLNEPRYATLPNIM
Sbjct: 145 QATSASKIEAKDGSLQVVREIDGGLETIKVKLPTVVSADLRLNEPRYATLPNIM 198

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847470|ref|XP_003699376.1| PREDICTED: electron transfer flavoprotein subunit beta-like [Megachile rotundata]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 114/174 (65%), Gaps = 46/174 (26%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           ++ IRTALAMGAD+GIHVE+SGPEYETLQP H+SKILAK+AQ+EK D+VIVGKQ      
Sbjct: 70  QDVIRTALAMGADKGIHVEISGPEYETLQPIHVSKILAKLAQDEKADLVIVGKQ------ 123

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQTAQM    L+WP
Sbjct: 124 ----------------------------------------AIDDDCNQTAQMIGGLLDWP 143

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
             TF SKV+KT+GEL + RE+DGGLE +K+K+PAV+SADLRLNEPRYATLPNIM
Sbjct: 144 TGTFCSKVEKTNGELNITREVDGGLEVLKMKMPAVLSADLRLNEPRYATLPNIM 197

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
ZFIN|ZDB-GENE-040426-1931	254	etfb "electron-transfer-flavop	0.318	0.303	0.727	1.1e-42
WB|WBGene00017734	255	F23C8.5 [Caenorhabditis elegan	0.318	0.301	0.705	4.4e-36
TIGR_CMR|SPO_0720	252	SPO_0720 "electron transfer fl	0.384	0.369	0.53	3.8e-33
ASPGD|ASPL0000042707	261	AN10278 [Emericella nidulans (	0.318	0.295	0.607	3.8e-31
TIGR_CMR|SO_3145	249	SO_3145 "electron transfer fla	0.318	0.309	0.597	6.8e-30
UNIPROTKB|Q48K87	249	etfB "Electron transfer flavop	0.318	0.309	0.610	1.8e-29
UNIPROTKB|Q4KFP4	249	etfB "Electron transfer flavop	0.318	0.309	0.597	3.7e-29
FB|FBgn0039697	254	CG7834 [Drosophila melanogaste	0.450	0.429	0.573	9.1e-29
DICTYBASE|DDB_G0277991	250	etfb "electron transfer flavop	0.495	0.48	0.547	1.7e-27
UNIPROTKB|E2QYD2	380	ETFB "Uncharacterized protein"	0.450	0.286	0.549	1.7e-27

ZFIN|ZDB-GENE-040426-1931 etfb "electron-transfer-flavoprotein, beta polypeptide" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 56/77 (72%), Positives = 65/77 (84%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
             AIDDD NQT QMTAA L+WPQ TFAS++     +L V REIDGGLETIK+KLPAV++ADL
Sbjct:   125 AIDDDCNQTGQMTAALLDWPQGTFASELAFEADKLKVVREIDGGLETIKIKLPAVVTADL 184

Query:   198 RLNEPRYATLPNIMKSQ 214
             RLN PRYATLPNIMK++
Sbjct:   185 RLNTPRYATLPNIMKAK 201

GO:0009055 "electron carrier activity" evidence=IEA

WB|WBGene00017734 F23C8.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 55/78 (70%), Positives = 64/78 (82%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISAD 196
             AIDDDS+QTA + A  L WPQA +ASKV D   G + V REIDGGL+TIKVK+P V+SAD
Sbjct:   123 AIDDDSSQTAPILAGLLEWPQALYASKVEDAGAGHMKVTREIDGGLDTIKVKVPFVLSAD 182

Query:   197 LRLNEPRYATLPNIMKSQ 214
             LRLNEPRYATLPNIMK++
Sbjct:   183 LRLNEPRYATLPNIMKAK 200

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TIGR_CMR|SPO_0720 SPO_0720 "electron transfer flavoprotein, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 250 (93.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 53/100 (53%), Positives = 68/100 (68%)

Query:   115 EIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTV 174
             +IV  E P +  AG         AID+D N T QM +A L W Q TFAS+++       V
Sbjct:   107 KIVEEEQPGIVLAGK-------QAIDNDMNATGQMLSALLGWSQGTFASELNVEGDHALV 159

Query:   175 KREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
              RE+DGGL+TIKVK+PA+I+ DLRLNEPRYA+LPNIMK++
Sbjct:   160 TREVDGGLQTIKVKMPAIITVDLRLNEPRYASLPNIMKAK 199

GO:0009055 "electron carrier activity" evidence=ISS

ASPGD|ASPL0000042707 AN10278 [Emericella nidulans (taxid:162425)]

 Score = 242 (90.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 48/79 (60%), Positives = 59/79 (74%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTD--GELTVKREIDGGLETIKVKLPAVISA 195
             AID D  QT QM A  L WPQAT AS+V+  D  G + V+ E+DGG+E +K KLP VI+ 
Sbjct:   130 AIDGDQGQTGQMLAGLLGWPQATQASRVEVKDEQGTVEVEHEVDGGVEILKAKLPMVITT 189

Query:   196 DLRLNEPRYATLPNIMKSQ 214
             DLRLNEPRYA+LPNIMK++
Sbjct:   190 DLRLNEPRYASLPNIMKAK 208

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|SO_3145 SO_3145 "electron transfer flavoprotein, beta subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 241 (89.9 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 46/77 (59%), Positives = 60/77 (77%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
             +ID D+NQT QM AA  + PQATFAS +      + V REIDGG++T+ + LPAV++ADL
Sbjct:   119 SIDGDNNQTGQMFAALTDMPQATFASAIKVEGNSIQVAREIDGGMQTLSLPLPAVVTADL 178

Query:   198 RLNEPRYATLPNIMKSQ 214
             RLNEPRYA+LPNIMK++
Sbjct:   179 RLNEPRYASLPNIMKAK 195

GO:0009055 "electron carrier activity" evidence=ISS

UNIPROTKB|Q48K87 etfB "Electron transfer flavoprotein, beta subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 254 (94.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 47/77 (61%), Positives = 62/77 (80%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
             AID D+NQT QM AA   +PQ TFASKV+ +  ++ V REIDGGL+T+ + LPA+++ DL
Sbjct:   119 AIDSDNNQTGQMLAALSGYPQGTFASKVEVSGDKVAVTREIDGGLQTVSLSLPAIVTTDL 178

Query:   198 RLNEPRYATLPNIMKSQ 214
             RLNEPRYA+LPNIMK++
Sbjct:   179 RLNEPRYASLPNIMKAK 195

GO:0009055 "electron carrier activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q4KFP4 etfB "Electron transfer flavoprotein, beta subunit" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 245 (91.3 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 46/77 (59%), Positives = 61/77 (79%)

Query:   138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
             AID D+NQT QM AA   + Q TFASKV+ +  ++ V REIDGGL+T+ + LPA+++ DL
Sbjct:   119 AIDSDNNQTGQMLAALSGYAQGTFASKVEVSGDKVNVTREIDGGLQTVALNLPAIVTTDL 178

Query:   198 RLNEPRYATLPNIMKSQ 214
             RLNEPRYA+LPNIMK++
Sbjct:   179 RLNEPRYASLPNIMKAK 195

GO:0009055 "electron carrier activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

FB|FBgn0039697 CG7834 [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 70/122 (57%), Positives = 84/122 (68%)

Query:   106 MGVDTGAHIEIVTVEDP---PVRQAGSIVP-------DVDTL---AIDDDSNQTAQMTAA 152
             MG D G H+EI   E     P+  +  +         D+  L   AIDDD+NQTAQMTAA
Sbjct:    80 MGADRGVHVEIPAAEYELLQPIHVSKILAKLALDEKADLVILGKQAIDDDANQTAQMTAA 139

Query:   153 FLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
              L+WPQ TF +K++KTD  LT+ REIDGGLETIK K PAV+SADLRLN PRYATLPNIMK
Sbjct:   140 VLDWPQGTFCNKIEKTDAGLTITREIDGGLETIKTKTPAVLSADLRLNTPRYATLPNIMK 199

Query:   213 SQ 214
             ++
Sbjct:   200 AK 201

GO:0017133 "mitochondrial electron transfer flavoprotein complex" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

DICTYBASE|DDB_G0277991 etfb "electron transfer flavoprotein beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 75/137 (54%), Positives = 89/137 (64%)

Query:   106 MGVDTGAHIEIVTVEDPPVRQAG---SIV----PDVDTL---AIDDDSNQTAQMTAAFLN 155
             MG D G H+E  T E  P+  A     +V    P++  L   AIDDD NQTAQM A  LN
Sbjct:    80 MGADKGIHVE-TTAELQPLSVAKLLKELVDKEKPNLIILGKQAIDDDCNQTAQMLAGLLN 138

Query:   156 WPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQV 215
             WPQATFASKVD  D  + V REIDGGLET+ +KLPA+IS DLRLNEPRYA L NIMKS+ 
Sbjct:   139 WPQATFASKVDIKDDSVHVTREIDGGLETLSMKLPAIISCDLRLNEPRYAKLQNIMKSKK 198

Query:   216 FCGQILNQMKVKPPSSV 232
                    ++KV+ P S+
Sbjct:   199 A------ELKVETPESL 209

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2QYD2 ETFB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 67/122 (54%), Positives = 84/122 (68%)

Query:   106 MGVDTGAHIEIVTVEDP---PVRQAGSIVP-----DVDTL-----AIDDDSNQTAQMTAA 152
             MG D G H+E+   E     P++ A  +        VD L     AIDDD NQT QMTA 
Sbjct:   206 MGADRGIHVEVPAAEADRLGPLQVARVLAKLAEKEKVDLLLLGKQAIDDDCNQTGQMTAG 265

Query:   153 FLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
             FL+WPQ TFAS+V     +L V+RE+DGGLET+++KLPAV++ADLRLNEPRYATLPNIMK
Sbjct:   266 FLDWPQGTFASQVTVEGDKLKVEREVDGGLETVRLKLPAVVTADLRLNEPRYATLPNIMK 325

Query:   213 SQ 214
             ++
Sbjct:   326 AK 327

GO:0005739 "mitochondrion" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68FU3	ETFB_RAT	No assigned EC number	0.5084	0.5413	0.5137	yes	N/A
Q6UAQ8	ETFB_PIG	No assigned EC number	0.5084	0.5413	0.5137	yes	N/A
P38117	ETFB_HUMAN	No assigned EC number	0.5141	0.5413	0.5137	yes	N/A
Q2TBV3	ETFB_BOVIN	No assigned EC number	0.5028	0.5413	0.5137	yes	N/A
Q5RFK0	ETFB_PONAB	No assigned EC number	0.5141	0.5413	0.5137	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	242
cd01714	202	cd01714, ETF_beta, The electron transfer flavoprot	5e-50
COG2086	260	COG2086, FixA, Electron transfer flavoprotein, bet	2e-42
cd01985	181	cd01985, ETF, The electron transfer flavoprotein (	7e-28
smart00893	185	smart00893, ETF, Electron transfer flavoprotein do	2e-23
pfam01012	160	pfam01012, ETF, Electron transfer flavoprotein dom	3e-17
PRK03359	256	PRK03359, PRK03359, putative electron transfer fla	2e-04
COG2086	260	COG2086, FixA, Electron transfer flavoprotein, bet	0.001
PRK12342	254	PRK12342, PRK12342, hypothetical protein; Provisio	0.001

>gnl|CDD|238847 cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

 Score =  162 bits (412), Expect = 5e-50
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 48/176 (27%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
            E +R ALAMGADR I V  S   +        +K LA   ++  VD+++ GKQ      
Sbjct: 66  EEALREALAMGADRAILV--SDRAFAGADTLATAKALAAAIKKIGVDLILTGKQ------ 117

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   +ID D+ Q   + A  L WP
Sbjct: 118 ----------------------------------------SIDGDTGQVGPLLAELLGWP 137

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
           Q T+ SK++   G++TV+RE++GG+ET++VKLPAVI+ DL +NEPRY +LP IMK+
Sbjct: 138 QITYVSKIEIEGGKVTVERELEGGVETVEVKLPAVITVDLGINEPRYPSLPGIMKA 193

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit. Length = 202

>gnl|CDD|224997 COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]

 Score =  144 bits (365), Expect = 2e-42
 Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 49/176 (27%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
            E +R ALAMGADR I +      +    P   +K LA   ++   D+V+ GKQ      
Sbjct: 69  EEALREALAMGADRAILIT--DRAFAGADPLATAKALAAAVKKIGPDLVLTGKQ------ 120

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AID D+ Q   + A  L WP
Sbjct: 121 ----------------------------------------AIDGDTGQVGPLLAELLGWP 140

Query: 158 QATFASKVDKTDG-ELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
           Q T+ SK++  DG ++TV+RE++GGLET++  LPAV++ DLR+NEPRY +LP IM 
Sbjct: 141 QVTYVSKIEIVDGGKVTVERELEGGLETVEAPLPAVVTVDLRINEPRYPSLPGIMA 196

Length = 260

>gnl|CDD|238943 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

 Score =  104 bits (261), Expect = 7e-28
 Identities = 50/177 (28%), Positives = 69/177 (38%), Gaps = 54/177 (30%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
             +R ALAMGAD+ + VE   P      P   +K LA + ++EK D+++ G         
Sbjct: 50  VALREALAMGADKVLLVE--DPALAGYDPEATAKALAALIKKEKPDLILAGAT------- 100

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                         SI              Q A   AA L  PQ
Sbjct: 101 ------------------------------SI------------GKQLAPRVAALLGVPQ 118

Query: 159 ATFASKVDKTDGELTVKREI--DGGLETIKVK-LPAVISADLRLNEPRYATLPNIMK 212
            +  +K++   G+LTV R I    GLET++   LPAVI+      EPRY + P   K
Sbjct: 119 ISDVTKLEIDGGDLTVTRPIYAGNGLETVESPDLPAVITVRPGAFEPRYPSGPGKKK 175

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit. Length = 181

>gnl|CDD|214890 smart00893, ETF, Electron transfer flavoprotein domain

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 60/182 (32%)

Query: 39  ETIRTALAMGADRGIHVEVSGPE-YETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           E +R ALAMGAD+   V+      Y+TL    +++ LA + +EEK D+V+ G        
Sbjct: 41  EALREALAMGADKVYLVDDDALAGYDTLAT--LAEALAALIKEEKPDLVLAGAT------ 92

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                       D  Q A   AA L  P
Sbjct: 93  -------------------------------------------SDGKQLAPRLAALLGVP 109

Query: 158 QATFASKVDKTDGELTVKREIDGGL---ETIKVKLPAVISADLRLNEP----RYATLPNI 210
           Q T  +K++  DG+  V+R   GG    E ++  LPAVI+      EP     Y +L  I
Sbjct: 110 QITDVTKLE-VDGDTFVRRIYGGGAIATEVVEADLPAVITVRPGAFEPAPRDGYPSLVEI 168

Query: 211 MK 212
           MK
Sbjct: 169 MK 170

Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II). ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs. Length = 185

>gnl|CDD|216243 pfam01012, ETF, Electron transfer flavoprotein domain

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 39/161 (24%), Positives = 53/161 (32%), Gaps = 53/161 (32%)

Query: 44  ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSP 103
             AMGAD+   VE   P      P   +  LA + ++E  D+V+ G              
Sbjct: 51  LAAMGADKVYLVE--DPALAGYDPEAYAAALAALIKKEGPDLVLAGAT------------ 96

Query: 104 KDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFAS 163
                                             +I  D    A   AA L  P  T  +
Sbjct: 97  ----------------------------------SIGKD---LAPRLAALLGAPLITDVT 119

Query: 164 KVDKTDGELTVKREIDGGLETIKVKLP--AVISADLRLNEP 202
            ++   G+LTV R I GG     VKLP  AV++      EP
Sbjct: 120 ALEVEGGKLTVTRPIYGGNAIATVKLPDPAVLTVRPGAFEP 160

This family includes the homologous domain shared between the alpha and beta subunits of the electron transfer flavoprotein. Length = 160

>gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 154 LNWPQATFASK-VDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM 211
           LN P     SK +  TD  LTV+RE++  +ET+ + LPAVI+    +N P+  ++  I+
Sbjct: 138 LNIPAINGVSKIISLTDDTLTVERELEDEVETLSIPLPAVIAVSTDINSPQIPSMKAIL 196

Length = 256

>gnl|CDD|224997 COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 89  GKQKAKKKPIKKVSPKDMG---VDTGAHIEIVTVEDPPVRQAGSIVPD 133
           G   AKKKP+KK S  D+G      G+ +++V V  PP R+AG  V D
Sbjct: 193 GIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKVKD 240

Length = 260

>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 144 NQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPR 203
               ++    L  P     SK+ +   +L V+R ++  +E +++ LPAV+     +N PR
Sbjct: 129 LLLGEL----LQLPVINAVSKIQRQGNKLIVERTLEDDVEVLELSLPAVLCVTSDINVPR 184

Query: 204 YATLPNIM 211
             ++  I+
Sbjct: 185 IPSMKAIL 192

Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
COG2086	260	FixA Electron transfer flavoprotein, beta subunit	100.0
PRK03359	256	putative electron transfer flavoprotein FixA; Revi	100.0
KOG3180|consensus	254		100.0
PRK12342	254	hypothetical protein; Provisional	100.0
cd01714	202	ETF_beta The electron transfer flavoprotein (ETF)	99.72
PRK03359	256	putative electron transfer flavoprotein FixA; Revi	99.66
cd01985	181	ETF The electron transfer flavoprotein (ETF) serve	99.64
PRK12342	254	hypothetical protein; Provisional	99.63
KOG3180|consensus	254		99.57
COG2086	260	FixA Electron transfer flavoprotein, beta subunit	99.56
PF01012	164	ETF: Electron transfer flavoprotein domain; InterP	99.55
cd01715	168	ETF_alpha The electron transfer flavoprotein (ETF)	99.14
PRK03363	313	fixB putative electron transfer flavoprotein FixB;	97.57
PRK11916	312	electron transfer flavoprotein subunit YdiR; Provi	97.54
COG2025	313	FixB Electron transfer flavoprotein, alpha subunit	97.24
PLN00022	356	electron transfer flavoprotein subunit alpha; Prov	96.99
cd01714	202	ETF_beta The electron transfer flavoprotein (ETF)	96.85

>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]

Probab=100.00  E-value=2.3e-37  Score=279.59  Aligned_cols=150  Identities=39%  Similarity=0.655  Sum_probs=142.8

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..++|+..+++.||+||+||+||+++|  +|+.|++.||+.||++|++++++.++|++|.|.+                 
T Consensus        60 vlt~Gp~~a~~~lr~aLAmGaDraili--~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~q-----------------  120 (260)
T COG2086          60 VLTMGPPQAEEALREALAMGADRAILI--TDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQ-----------------  120 (260)
T ss_pred             EEEecchhhHHHHHHHHhcCCCeEEEE--ecccccCccHHHHHHHHHHHHHhcCCCEEEEecc-----------------
Confidence            359999999999999999999999999  7788999999999999999999999999999999                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEE-eCCEEEEEEEeCCeEEEEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDK-TDGELTVKREIDGGLETIKV  187 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~-~~~~~~v~r~~~~g~~~~~~  187 (242)
                                                   ++|++.+++|.+||++|||||+|+|++|++ ++++++|+|++|+|.|++++
T Consensus       121 -----------------------------a~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~  171 (260)
T COG2086         121 -----------------------------AIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEGGLETVEA  171 (260)
T ss_pred             -----------------------------cccCCccchHHHHHHHhCCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEc
Confidence                                         889999999999999999999999999996 66799999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640        188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV  226 (242)
Q Consensus       188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~  226 (242)
                      +||||||++.++|+||||||++||+|++++++.|+..++
T Consensus       172 ~LPaVvtv~~~~n~PR~psl~~im~A~kk~v~~~~~~d~  210 (260)
T COG2086         172 PLPAVVTVDLRINEPRYPSLPGIMAAKKKPVKKWSLADL  210 (260)
T ss_pred             cCCEEEEeccccCCCCCCCHHHHHHhccCCceeccHhHh
Confidence            999999999999999999999999999999999964433

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed

Probab=100.00  E-value=1.3e-36  Score=273.57  Aligned_cols=150  Identities=25%  Similarity=0.353  Sum_probs=141.4

Q ss_pred             ccccCcchHH--HHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCC
Q psy10640         29 KSQQHTITQR--ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDM  106 (242)
Q Consensus        29 ~~~~~~~~a~--e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDL  106 (242)
                      ..++|+..++  +.||+||+||||++++|  +|+.|++.|++.||++|++++++.+||++|+|.+               
T Consensus        59 vvs~Gp~~a~~~~~lr~aLAmGaD~avli--~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~---------------  121 (256)
T PRK03359         59 ALSVGGKALTNAKGRKDVLSRGPDELIVV--IDDQFEQALPQQTASALAAAAQKAGFDLILCGDG---------------  121 (256)
T ss_pred             EEEECCcchhhHHHHHHHHHcCCCEEEEE--ecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCc---------------
Confidence            4599999966  78999999999999999  6788999999999999999999999999999998               


Q ss_pred             CCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEE-EEeCCEEEEEEEeCCeEEEE
Q psy10640        107 GVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETI  185 (242)
Q Consensus       107 gid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~-~~~~~~~~v~r~~~~g~~~~  185 (242)
                                                     |+|++.++++++||++||||++|+|+++ +++++.++|+|++++|.|++
T Consensus       122 -------------------------------s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~v~v~r~~e~g~e~v  170 (256)
T PRK03359        122 -------------------------------SSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETL  170 (256)
T ss_pred             -------------------------------cccCCCCcHHHHHHHHhCCCceeeEEEEEEecCCEEEEEEEcCCeEEEE
Confidence                                           8999999999999999999999999999 47889999999999999999


Q ss_pred             EEcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640        186 KVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV  226 (242)
Q Consensus       186 ~~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~  226 (242)
                      +++||||+|++.++|+||||||++||+|+++++++|+.-++
T Consensus       171 e~~lPavvtV~~~~n~PR~psl~~i~~A~kk~i~~~~~~dl  211 (256)
T PRK03359        171 SIPLPAVIAVSTDINSPQIPSMKAILGAAKKPVQVWSAADI  211 (256)
T ss_pred             EEcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHHc
Confidence            99999999999999999999999999999999999975443

>KOG3180|consensus

Probab=100.00  E-value=4.4e-37  Score=270.47  Aligned_cols=146  Identities=60%  Similarity=0.892  Sum_probs=137.2

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      .++.|+..+.++||+|||||+||++||++.+.  +.+.|+++|++|.+.+.+.++|++|-|.+                 
T Consensus        63 avs~G~aqs~~ilRt~LA~Gadr~~hv~~~~~--~~lepl~vAKiLk~~vekek~~lVllGKQ-----------------  123 (254)
T KOG3180|consen   63 AVSIGPAQSQEILRTALAKGADRGVHVEVVGA--EELEPLHVAKILKKLVEKEKSDLVLLGKQ-----------------  123 (254)
T ss_pred             EEecCccchHHHHHHHHhccCCceeEEecCch--hhccchHHHHHHHHHHHhhcCCEEEEccc-----------------
Confidence            35899999999999999999999999987653  56779999999999999999999999998                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeC-CEEEEEEEeCCeEEEEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTD-GELTVKREIDGGLETIKV  187 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~-~~~~v~r~~~~g~~~~~~  187 (242)
                                                   ++|+|.+++++++|.+|||||+||+++|++++ ++++|+||+|||+|++++
T Consensus       124 -----------------------------AIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~  174 (254)
T KOG3180|consen  124 -----------------------------AIDDDCNQTGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKV  174 (254)
T ss_pred             -----------------------------ccccchhhhHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheee
Confidence                                         79999999999999999999999999999976 459999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeee
Q psy10640        188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILN  222 (242)
Q Consensus       188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~  222 (242)
                      +||+||+.|+|+|+|||+||+|||||+++++..+.
T Consensus       175 ~lPaVittDLRLN~PRya~LpniMKAkkkpl~k~~  209 (254)
T KOG3180|consen  175 KLPAVITTDLRLNTPRYATLPNIMKAKKKPLKKMT  209 (254)
T ss_pred             cCceEEEeecccCCccccccHHHHHhccCCcccCC
Confidence            99999999999999999999999999999998774

>PRK12342 hypothetical protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=268.50  Aligned_cols=149  Identities=19%  Similarity=0.273  Sum_probs=140.3

Q ss_pred             ccccCcchHHHH--HHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCC
Q psy10640         29 KSQQHTITQRET--IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDM  106 (242)
Q Consensus        29 ~~~~~~~~a~e~--Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDL  106 (242)
                      ..++|+..+++.  +|+||+||||++++|  +|+.|++.|+++||++|++++++.+||++|+|.+               
T Consensus        56 vls~Gp~~a~~~~l~r~alamGaD~avli--~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~---------------  118 (254)
T PRK12342         56 ALTVGGSLLQNSKVRKDVLSRGPHSLYLV--QDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEG---------------  118 (254)
T ss_pred             EEEeCCChHhHHHHHHHHHHcCCCEEEEE--ecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCC---------------
Confidence            458999886555  588999999999999  6789999999999999999999989999999998               


Q ss_pred             CCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEE
Q psy10640        107 GVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIK  186 (242)
Q Consensus       107 gid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~  186 (242)
                                                     |.|++.+++|++||++|||||+|+|.+++++++.++|+|++++|.|+++
T Consensus       119 -------------------------------s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~e~g~e~v~  167 (254)
T PRK12342        119 -------------------------------SGDLYAQQVGLLLGELLQLPVINAVSKIQRQGNKLIVERTLEDDVEVLE  167 (254)
T ss_pred             -------------------------------cccCCCCCHHHHHHHHhCCCcEeeEEEEEEeCCEEEEEEEcCCeEEEEE
Confidence                                           8999999999999999999999999999999999999999999999999


Q ss_pred             EcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeeccc
Q psy10640        187 VKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMK  225 (242)
Q Consensus       187 ~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~  225 (242)
                      ++||||||++.++|+||||||++||+|+++++++|+..+
T Consensus       168 ~~lPavvtv~~~~n~PR~psl~~i~~A~kk~i~~~~~~d  206 (254)
T PRK12342        168 LSLPAVLCVTSDINVPRIPSMKAILGAGKKPVTQWQASD  206 (254)
T ss_pred             EcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHH
Confidence            999999999999999999999999999999999997443

>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

Probab=99.72  E-value=3.2e-16  Score=135.80  Aligned_cols=143  Identities=43%  Similarity=0.708  Sum_probs=124.9

Q ss_pred             cCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCc
Q psy10640         32 QHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTG  111 (242)
Q Consensus        32 ~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s  111 (242)
                      .|+..+.+..+.+.++|+|+.+++  .+..++..++...+++|++++++.+||++|-+--                    
T Consensus        60 ~G~~~~~~~~~~l~~~G~d~V~~~--~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t--------------------  117 (202)
T cd01714          60 MGPPQAEEALREALAMGADRAILV--SDRAFAGADTLATAKALAAAIKKIGVDLILTGKQ--------------------  117 (202)
T ss_pred             ECCHHHHHHHHHHHHcCCCEEEEE--ecccccCCChHHHHHHHHHHHHHhCCCEEEEcCC--------------------
Confidence            444435677777888999999998  4566777889999999999998888998887764                    


Q ss_pred             CceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEcCCe
Q psy10640        112 AHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPA  191 (242)
Q Consensus       112 ~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~lPa  191 (242)
                                                +.+....+++++||..||||+++.+++++.+++.++++|...+|..+++++.|+
T Consensus       118 --------------------------~~~~~grdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~~~~~~~p~  171 (202)
T cd01714         118 --------------------------SIDGDTGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVETVEVKLPA  171 (202)
T ss_pred             --------------------------cccCCcCcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEEEEEecCCE
Confidence                                      334445799999999999999999999999999999999999999888888999


Q ss_pred             EEEEeCCCCCCCCCChHHHHhhcCccceeee
Q psy10640        192 VISADLRLNEPRYATLPNIMKSQVFCGQILN  222 (242)
Q Consensus       192 vis~~~~~~~pr~~~l~~i~~a~~~~~~~~~  222 (242)
                      |+++..+..+|+.|+|++||+|.+++++.|+
T Consensus       172 VitVr~g~f~~~~~~~~~~~~a~~~~~~~~~  202 (202)
T cd01714         172 VITVDLGINEPRYPSLPGIMKAKKKPIEVVS  202 (202)
T ss_pred             EEEEECCCCCCCCCCHHHHHHhcCCCCEeeC
Confidence            9999999999999999999999999999874

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed

Probab=99.66  E-value=2.3e-17  Score=149.03  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             CCCchhHHHHHHhCCccccccccee-eccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLS-EAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ   79 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~   79 (242)
                      .||++|+++|++||||++|.+.++. .+++.    ..++       +...++...++++.+.       .++ +... ++
T Consensus       126 ~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~----v~v~-------r~~e~g~e~ve~~lPa-------vvt-V~~~-~n  185 (256)
T PRK03359        126 YAQQVGLLVGEILNIPAINGVSKIISLTDDT----LTVE-------RELEDEVETLSIPLPA-------VIA-VSTD-IN  185 (256)
T ss_pred             CCCcHHHHHHHHhCCCceeeEEEEEEecCCE----EEEE-------EEcCCeEEEEEEcCCE-------EEE-EeCC-CC
Confidence            4899999999999999999999994 44433    4444       5555666666666533       333 2222 67


Q ss_pred             hcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhC
Q psy10640         80 EEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN  155 (242)
Q Consensus        80 ~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~  155 (242)
                      ++|| |+|++||+||||||++|+++|||++..+.+++.+.+.|++++.|.++       ++++.++.+.+|+++|.
T Consensus       186 ~PR~-psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i-------~~g~~~e~a~~lv~~L~  253 (256)
T PRK03359        186 SPQI-PSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIV-------IEGDGEEQIAAFAENLR  253 (256)
T ss_pred             CCCC-CCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEE-------ecCCcHHHHHHHHHHHH
Confidence            7899 99999999999999999999999987778888999999999999886       24455788889988873

>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

Probab=99.64  E-value=8e-15  Score=123.06  Aligned_cols=137  Identities=34%  Similarity=0.443  Sum_probs=118.3

Q ss_pred             cccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCC
Q psy10640         30 SQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVD  109 (242)
Q Consensus        30 ~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid  109 (242)
                      ...|+...+..++.++++|+|+.+++  .++.++..+|..++++|++++++.+||++|.+-.                  
T Consensus        41 v~~G~~~~~~~~~~~~~~Gad~v~~~--~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t------------------  100 (181)
T cd01985          41 LVIGPPAAEVALREALAMGADKVLLV--EDPALAGYDPEATAKALAALIKKEKPDLILAGAT------------------  100 (181)
T ss_pred             EEECChHHHHHHHHHHHhCCCEEEEE--ecCcccCCChHHHHHHHHHHHHHhCCCEEEECCc------------------
Confidence            35677777777899999999999999  4567788899999999999999988999998875                  


Q ss_pred             CcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEe--CCeEEEEEE
Q psy10640        110 TGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREI--DGGLETIKV  187 (242)
Q Consensus       110 ~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~--~~g~~~~~~  187 (242)
                                                  + .  ..+++++||..||||+++.+++++.+++.++++|..  +++.+++++
T Consensus       101 ----------------------------~-~--g~~la~rlA~~L~~~~vsdv~~l~~~~~~~~~~r~~~~g~~~~~~~~  149 (181)
T cd01985         101 ----------------------------S-I--GKQLAPRVAALLGVPQISDVTKLEIDGGDLTVTRPIYAGNGLETVES  149 (181)
T ss_pred             ----------------------------c-c--ccCHHHHHHHHhCCCcceeEEEEEEeCCEEEEEEEccCCCeEEEEEE
Confidence                                        1 2  379999999999999999999999999999999999  555789999


Q ss_pred             c-CCeEEEEeCCCCCCCCCChHHHHhhcCccceee
Q psy10640        188 K-LPAVISADLRLNEPRYATLPNIMKSQVFCGQIL  221 (242)
Q Consensus       188 ~-lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~  221 (242)
                      + .|+|+++..+.++|++++.++    +++++..+
T Consensus       150 ~~~p~v~tv~~~~~~~~~~~~~~----~~~~i~~~  180 (181)
T cd01985         150 PDLPAVITVRPGAFEPRYPSGPG----KKKPVEKV  180 (181)
T ss_pred             CCCCEEEEecCCCCCCCCCCCCC----CCCCCEec
Confidence            7 999999999999999999887    55555543

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.

>PRK12342 hypothetical protein; Provisional

Probab=99.63  E-value=8.9e-17  Score=145.14  Aligned_cols=126  Identities=17%  Similarity=0.216  Sum_probs=98.3

Q ss_pred             CCCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE   80 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~   80 (242)
                      .||++|+++|++||||++|.+.+++.+++.    ..++       +...++...+++..+..       ++ +.. -+++
T Consensus       123 ~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~----~~v~-------r~~e~g~e~v~~~lPav-------vt-v~~-~~n~  182 (254)
T PRK12342        123 YAQQVGLLLGELLQLPVINAVSKIQRQGNK----LIVE-------RTLEDDVEVLELSLPAV-------LC-VTS-DINV  182 (254)
T ss_pred             CCCCHHHHHHHHhCCCcEeeEEEEEEeCCE----EEEE-------EEcCCeEEEEEEcCCEE-------EE-EeC-CCCC
Confidence            489999999999999999999999887654    4444       44455555666655333       22 211 2577


Q ss_pred             cCCCcchhhhhhhcCCCcceeCCCCCCCCC-cCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHh
Q psy10640         81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDT-GAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFL  154 (242)
Q Consensus        81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~-s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L  154 (242)
                      +|| |.|++||+||||||++|+.+|||++. .+.+++.+.+.|++++.|.++       ++++..+.+.+|+++|
T Consensus       183 PR~-psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~v~~~~~p~~~~~~~~~-------~~g~~~e~a~~l~~~L  249 (254)
T PRK12342        183 PRI-PSMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHII-------LDNDSPEAIAELAEHL  249 (254)
T ss_pred             CCC-CCHHHHHHhcCCCceEeCHHHcCCCCCCCceEEEEEeCCCcccCccEE-------ecCChHHHHHHHHHHH
Confidence            899 99999999999999999999999986 589999999999998888554       3455577888888876

>KOG3180|consensus

Probab=99.57  E-value=1.1e-15  Score=135.53  Aligned_cols=109  Identities=31%  Similarity=0.383  Sum_probs=89.4

Q ss_pred             hhHHHHHHhCCcccccccceeecccc----ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640          5 FPSIWRQRQGIRQFTTSSSLSEAEKS----QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE   80 (242)
Q Consensus         5 ~~~~~~~~~~~~~~t~~~~l~~~~~~----~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~   80 (242)
                      -+.|+|..|||||.|+++.++.+++-    +|--....|+|+.-|      +..|..+.                 -++.
T Consensus       132 TgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~~l------PaVittDL-----------------RLN~  188 (254)
T KOG3180|consen  132 TGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKVKL------PAVITTDL-----------------RLNT  188 (254)
T ss_pred             hHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheeecC------ceEEEeec-----------------ccCC
Confidence            35789999999999999999998752    444444555665333      44443222                 1567


Q ss_pred             cCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCcccc
Q psy10640         81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL  137 (242)
Q Consensus        81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~L  137 (242)
                      +|| -+|+||||||||||+++++.|||++..++++++++.+|+.|++|.++.++++|
T Consensus       189 PRy-a~LpniMKAkkkpl~k~~~~dl~Vdi~~~l~~vsv~ePp~r~~gv~v~svdel  244 (254)
T KOG3180|consen  189 PRY-ATLPNIMKAKKKPLKKMTIKDLGVDITPQLETVSVEEPPQRQAGVMVKSVDEL  244 (254)
T ss_pred             ccc-cccHHHHHhccCCcccCCHHHcCcccccceEEEEecCCCcccCCceeeeHHHH
Confidence            899 99999999999999999999999999999999999999999999999988877

>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]

Probab=99.56  E-value=9.9e-16  Score=139.05  Aligned_cols=126  Identities=27%  Similarity=0.296  Sum_probs=96.4

Q ss_pred             CCCchhHHHHHHhCCcccccccceee-ccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLSE-AEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ   79 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~~-~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~   79 (242)
                      .||++|.++|++||||++|.++++.. +++.    ..++       +...++.-.++++.       |+.++ +.-. ++
T Consensus       125 ~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~----v~v~-------R~le~g~e~~e~~L-------PaVvt-v~~~-~n  184 (260)
T COG2086         125 DTGQVGPLLAELLGWPQVTYVSKIEIVDGGK----VTVE-------RELEGGLETVEAPL-------PAVVT-VDLR-IN  184 (260)
T ss_pred             CccchHHHHHHHhCCceeeeEEEEEEcCCCe----EEEE-------EEcCCceEEEEccC-------CEEEE-eccc-cC
Confidence            48999999999999999999999996 5533    3333       33444445555554       33333 3333 78


Q ss_pred             hcCCCcchhhhhhhcCCCcceeCCCCCCC---CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhC
Q psy10640         80 EEKVDMVIVGKQKAKKKPIKKVSPKDMGV---DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN  155 (242)
Q Consensus        80 ~~~yd~iL~gImkAKKKpIe~vslaDLgi---d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~  155 (242)
                      +||| +.|++||+|||||+++|+++|+|+   ...+++++.+.++|+.|+.|.++.|       + ..+.+..|+++|.
T Consensus       185 ~PR~-psl~~im~A~kk~v~~~~~~d~g~~~~~~~s~~~v~~~~~~~~r~~~~~v~~-------~-~~e~a~~lv~~L~  254 (260)
T COG2086         185 EPRY-PSLPGIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKVKD-------G-PEEIAAELVEKLK  254 (260)
T ss_pred             CCCC-CCHHHHHHhccCCceeccHhHhcccccccCCcceeeeccCCccccCceEecC-------c-HHHHHHHHHHHHH
Confidence            8999 999999999999999999999994   4669999999999999999998742       2 4666777777763

>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems

Probab=99.55  E-value=1.9e-14  Score=118.85  Aligned_cols=121  Identities=31%  Similarity=0.431  Sum_probs=101.7

Q ss_pred             ccCc-chHHHHHHHHHH-cCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         31 QQHT-ITQRETIRTALA-MGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        31 ~~~~-~~a~e~Lr~aLa-~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..|+ ..+.+.||++++ +|+|+.+++  +++.+...+|..++++|++++++.+||++|.+-.                 
T Consensus        39 ~~G~~~~~~~~l~~~l~~~G~d~v~~~--~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t-----------------   99 (164)
T PF01012_consen   39 VLGPAEEAAEALRKALAKYGADKVYHI--DDPALAEYDPEAYADALAELIKEEGPDLVLFGST-----------------   99 (164)
T ss_dssp             EEETCCCHHHHHHHHHHSTTESEEEEE--E-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESS-----------------
T ss_pred             EEecchhhHHHHhhhhhhcCCcEEEEe--cCccccccCHHHHHHHHHHHHHhcCCCEEEEcCc-----------------
Confidence            4555 678999999999 999999999  4566777899999999999999999999998864                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEc
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVK  188 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~  188 (242)
                                                   +.+   .+++++||..||||+++.+++++.+|+.++++|...+|....+++
T Consensus       100 -----------------------------~~g---~~la~~lA~~L~~~~v~~v~~l~~~~~~~~~~r~~~gG~~~~~~~  147 (164)
T PF01012_consen  100 -----------------------------SFG---RDLAPRLAARLGAPLVTDVTDLEVEDGGLVVTRPVYGGKVVATVR  147 (164)
T ss_dssp             -----------------------------HHH---HHHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred             -----------------------------CCC---CcHHHHHHHHhCCCccceEEEEEECCCeEEEEEECCCCEEEEEEE
Confidence                                         222   459999999999999999999999999999999999999888888


Q ss_pred             CC---eEEEEeCCCCCC
Q psy10640        189 LP---AVISADLRLNEP  202 (242)
Q Consensus       189 lP---avis~~~~~~~p  202 (242)
                      +|   +|+++..+.++|
T Consensus       148 ~~~~~~v~tv~~g~f~P  164 (164)
T PF01012_consen  148 LPSPPAVVTVRPGAFEP  164 (164)
T ss_dssp             CSSSSEEEEE-TTSS--
T ss_pred             CCCCCEEEEEeCCCcCc
Confidence            88   999999998877

They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....

>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

Probab=99.14  E-value=6.4e-10  Score=92.88  Aligned_cols=117  Identities=20%  Similarity=0.164  Sum_probs=94.8

Q ss_pred             ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCC
Q psy10640         31 QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDT  110 (242)
Q Consensus        31 ~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~  110 (242)
                      ..|+.... ..++++++|+|+.+++  +++.+...+|...+++|++++++.+||++|.+--                   
T Consensus        35 ~~G~~~~~-~~~~~~~~Gad~v~~~--~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t-------------------   92 (168)
T cd01715          35 VIGSGAEA-VAAALKAYGADKVLVA--EDPALAHYLAEPYAPALVALAKKEKPSHILAGAT-------------------   92 (168)
T ss_pred             EECCChHH-HHHHHHhcCCCEEEEe--cChhhcccChHHHHHHHHHHHHhcCCCEEEECCC-------------------
Confidence            44544433 4888899999999999  4556777889999999999999888999998874                   


Q ss_pred             cCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEc--
Q psy10640        111 GAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVK--  188 (242)
Q Consensus       111 s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~--  188 (242)
                                                  ..+  .+++++||..||+|+++.+++++.   .++++|...+|....++.  
T Consensus        93 ----------------------------~~g--~~la~rlAa~L~~~~vtdv~~l~~---~~~~~r~~~gG~~~~~~~~~  139 (168)
T cd01715          93 ----------------------------SFG--KDLAPRVAAKLDVGLISDVTALED---DLTFTRPIYAGNALATVKSP  139 (168)
T ss_pred             ----------------------------ccc--cchHHHHHHHhCCCceeeEEEEcc---CcEEEccccCceEEEEEEeC
Confidence                                        122  699999999999999999999966   568999999997544443  


Q ss_pred             -CCeEEEEeCCCCCC
Q psy10640        189 -LPAVISADLRLNEP  202 (242)
Q Consensus       189 -lPavis~~~~~~~p  202 (242)
                       -|+|+++..+..+|
T Consensus       140 ~~p~v~tv~~g~f~~  154 (168)
T cd01715         140 DRPKVATVRPGAFPA  154 (168)
T ss_pred             CCCeEEEEcCCcccC
Confidence             49999998887664

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.

>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional

Probab=97.57  E-value=0.0013  Score=61.77  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=83.1

Q ss_pred             HHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCC-CcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCC
Q psy10640         44 ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKV-DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDP  122 (242)
Q Consensus        44 aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~y-d~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P  122 (242)
                      +.+.|+|+.++++.  +.++ .++-..+++|++++++.++ +.+|-+--                               
T Consensus        44 ~~~~Gad~V~~~~~--~~~~-~~~e~~~~al~~~i~~~~p~~~vl~~~T-------------------------------   89 (313)
T PRK03363         44 AIQLGANHVWKLSG--KPDD-RMIEDYAGVMADTIRQHGADGLVLLPNT-------------------------------   89 (313)
T ss_pred             HHhcCCCEEEEecC--cccc-cChHHHHHHHHHHHHhhCCCcEEEEcCC-------------------------------
Confidence            45789999999854  3233 6677888899998888776 56654432                               


Q ss_pred             CCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEcC-CeEEEEeCCC
Q psy10640        123 PVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVKL-PAVISADLRL  199 (242)
Q Consensus       123 ~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~l-Pavis~~~~~  199 (242)
                                      ..+  .+.+++||..|+.++++.+++++++++.+.+.|..-+|.  .++++.. |.++++..+.
T Consensus        90 ----------------~~G--r~laprlAa~l~~gl~~D~~~l~~~~~~l~~~rp~~gG~~~a~~~~~~~~~v~tvrpg~  151 (313)
T PRK03363         90 ----------------RRG--KLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGT  151 (313)
T ss_pred             ----------------ccH--HHHHHHHHHHhCCCcccceEEEEecCCCcEEEEeccCCcEEEEEEECCCCeEEEECCCC
Confidence                            223  689999999999999999999998888888899999995  4556544 7899998876


Q ss_pred             CCCC
Q psy10640        200 NEPR  203 (242)
Q Consensus       200 ~~pr  203 (242)
                      .+|.
T Consensus       152 f~~~  155 (313)
T PRK03363        152 FDAA  155 (313)
T ss_pred             ccCC
Confidence            6543

>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional

Probab=97.54  E-value=0.0019  Score=60.64  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=82.4

Q ss_pred             HHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCC
Q psy10640         44 ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPP  123 (242)
Q Consensus        44 aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~  123 (242)
                      ..+.|+|+.++++.++ ..  .++-..+.++++++++.+|+.+|-+--                                
T Consensus        44 l~~~Gad~V~~~~~~~-~~--~~~e~~~~al~~~i~~~~P~~vL~~~T--------------------------------   88 (312)
T PRK11916         44 VMPYGPKCIYVLEQND-AL--QRTENYAESIAALLKDKHPAMLLLAAT--------------------------------   88 (312)
T ss_pred             HHhcCCCEEEEeCCcc-cc--cChHHHHHHHHHHHHhcCCCEEEECCC--------------------------------
Confidence            3467999999985432 22  236677889999888877766665431                                


Q ss_pred             CCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEc-CCeEEEEeCCCC
Q psy10640        124 VRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVK-LPAVISADLRLN  200 (242)
Q Consensus       124 ~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~-lPavis~~~~~~  200 (242)
                                     ..+  .+.+++||..|+.++++.+++++.+++.+.+.|..-+|.  .++.++ -|+++++..+..
T Consensus        89 ---------------~~G--rdla~rlAarL~~gl~~d~~~l~~~~~~~~~~rp~~gG~~~a~i~~~~~p~v~tvrpg~f  151 (312)
T PRK11916         89 ---------------KRG--KALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQ  151 (312)
T ss_pred             ---------------cch--HHHHHHHHHHhCCCcccceEEEEecCCCeEEEEEcCCCcEEEEEEECCCCeEEEECCCCc
Confidence                           223  589999999999999999999999888888899888884  566664 489999998876


Q ss_pred             CCC
Q psy10640        201 EPR  203 (242)
Q Consensus       201 ~pr  203 (242)
                      +|.
T Consensus       152 ~~~  154 (312)
T PRK11916        152 EPC  154 (312)
T ss_pred             CCC
Confidence            544

>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]

Probab=97.24  E-value=0.0038  Score=58.80  Aligned_cols=115  Identities=29%  Similarity=0.303  Sum_probs=89.1

Q ss_pred             HHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEE
Q psy10640         39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVT  118 (242)
Q Consensus        39 e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~  118 (242)
                      ..-.++...|+|..+.++.  ..++...+-..+.+|.+.+++..+|.+|-+=-                           
T Consensus        39 ~~~~~~~~~Gad~v~~~~~--~~~~~~~~e~~~~~l~~l~~~~~p~~il~~aT---------------------------   89 (313)
T COG2025          39 GAAAAAKAYGADKVLVAEG--PELANYLPEPYADALVDLAKKYKPDVVLLPAT---------------------------   89 (313)
T ss_pred             HHHHHHhhcCCCEEEEEcc--cchhccchhHHHHHHHHHHHhcCCCEEEEcCC---------------------------
Confidence            4456677899999999953  45555567778889999888876666654431                           


Q ss_pred             eeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEE--cCCeEEE
Q psy10640        119 VEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKV--KLPAVIS  194 (242)
Q Consensus       119 ~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~--~lPavis  194 (242)
                                          ..+  .+.++++|..|+.++++.+++++..++ ++.+|.+-+|.  .+++.  +-|.|++
T Consensus        90 --------------------~~G--k~la~rvAa~l~~~~~~D~~~l~~~~~-l~~~Rp~ygG~~i~~~~~~~~~~~v~T  146 (313)
T COG2025          90 --------------------TNG--KELAPRVAARLDVGLIADVTSLDVGDG-LTFTRPIYGGNAIATVISPSGRPAVIT  146 (313)
T ss_pred             --------------------Cch--HHHHHHHHHHcCCCceEEEEEEEcCCc-cEEEeeccccceeEEEecCCCCceEEE
Confidence                                122  489999999999999999999999999 99999999996  45553  4599999


Q ss_pred             EeCCCCCCCCC
Q psy10640        195 ADLRLNEPRYA  205 (242)
Q Consensus       195 ~~~~~~~pr~~  205 (242)
                      +..+.-++.-+
T Consensus       147 vr~g~~~~~~~  157 (313)
T COG2025         147 VRPGVFAAAAA  157 (313)
T ss_pred             EcccccCCCCC
Confidence            99887665333

>PLN00022 electron transfer flavoprotein subunit alpha; Provisional

Probab=96.99  E-value=0.013  Score=56.00  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=78.3

Q ss_pred             cCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCC
Q psy10640         47 MGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQ  126 (242)
Q Consensus        47 ~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~  126 (242)
                      .|+|+.+++  .++.++..++-..++++++++++.+++.+|-+--                                   
T Consensus        84 ~Gad~V~~~--~~~~l~~y~~e~~a~al~~li~~~~P~~vL~~~T-----------------------------------  126 (356)
T PLN00022         84 PSVSEVLVA--DSDKLTHPLAEPWAKLVVLAQQKGGYSHILAAST-----------------------------------  126 (356)
T ss_pred             CCCCEEEEe--cCchhcccChHHHHHHHHHHHHhcCCCEEEECCC-----------------------------------
Confidence            499999998  4556666678888999999999888877665442                                   


Q ss_pred             CceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEc--CCeEEEEeCCCCC
Q psy10640        127 AGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVK--LPAVISADLRLNE  201 (242)
Q Consensus       127 aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~--lPavis~~~~~~~  201 (242)
                                  ..+  .+.+++||..|+.++++.++.++ +++ . ..|..-+|.  .++.++  .|+++++..+.-+
T Consensus       127 ------------~~G--rdlApRlAarL~~gl~aD~~~l~-~~~-~-~~rp~~gG~~~a~i~~~~~~p~~~Tvrpg~f~  188 (356)
T PLN00022        127 ------------SFG--KNVLPRAAALLDVSPITDVVRIL-DSN-T-FVRPIYAGNALATVRYKGSGPCMLSIRPTSFP  188 (356)
T ss_pred             ------------Cch--hHHHHHHHHHhCCCeecCEEEEc-CCC-e-EEEEecCCcEEEEEEeCCCCcEEEEECCCccc
Confidence                        223  68999999999999999999996 333 3 778888884  566663  4899999877654

>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

Probab=96.85  E-value=0.00045  Score=60.12  Aligned_cols=76  Identities=25%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             CchhHHHHHHhCCcccccccceeecccc---ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640          3 GAFPSIWRQRQGIRQFTTSSSLSEAEKS---QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ   79 (242)
Q Consensus         3 ~~~~~~~~~~~~~~~~t~~~~l~~~~~~---~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~   79 (242)
                      ..+++.+|.+||+|.+|.|.+++.+++.   ++........    ....  ....+.+....|+                
T Consensus       124 rdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~~----~~~~--~p~VitVr~g~f~----------------  181 (202)
T cd01714         124 GQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVET----VEVK--LPAVITVDLGINE----------------  181 (202)
T ss_pred             CcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEEE----EEec--CCEEEEEECCCCC----------------
Confidence            3689999999999999999999876542   1111111100    0001  1222222222221                


Q ss_pred             hcCCCcchhhhhhhcCCCcceeC
Q psy10640         80 EEKVDMVIVGKQKAKKKPIKKVS  102 (242)
Q Consensus        80 ~~~yd~iL~gImkAKKKpIe~vs  102 (242)
                       ++. |.+++||+|+||||++|+
T Consensus       182 -~~~-~~~~~~~~a~~~~~~~~~  202 (202)
T cd01714         182 -PRY-PSLPGIMKAKKKPIEVVS  202 (202)
T ss_pred             -CCC-CCHHHHHHhcCCCCEeeC
Confidence             233 779999999999999985

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
1efv_B	255	Three-Dimensional Structure Of Human Electron Trans		3e-43
2a1t_S	255	Structure Of The Human Mcad:etf E165betaa Complex L		2e-42
1efp_B	252	Electron Transfer Flavoprotein (Etf) From Paracoccu		4e-32
1o94_C	264	Ternary Complex Between Trimethylamine Dehydrogenas		7e-08

>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer Flavoprotein To 2.1 A Resolution Length = 255

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 111/177 (62%), Gaps = 46/177 (25%)
Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXX 97
           +ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++G        
Sbjct: 72  QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98  XXXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex Length = 255

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 110/177 (62%), Gaps = 46/177 (25%)
Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXX 97
           +ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++G        
Sbjct: 72  QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98  XXXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     +L V+R IDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVERAIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202

>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus Denitrificans Length = 252

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 96/176 (54%), Gaps = 46/176 (26%)
Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXXX 98
           ET+RTALAMGADR I V  +    + ++P  ++KILA VA+ E  +++I G         
Sbjct: 70  ETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------- 122
Query: 99  XXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AID+D N T QM AA L W Q
Sbjct: 123 ---------------------------------------AIDNDMNATGQMLAAILGWAQ 143
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           ATFASKV+    +  V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK++
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAK 199

>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And Electron Transferring Flavoprotein Length = 264

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 51/178 (28%)
Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXXX 98
           E++R  LA GADR + V     E        + +IL +V ++E  DMV  G         
Sbjct: 71  ESLRKCLAKGADRAVRVWDDAAEGS--DAIVVGRILTEVIKKEAPDMVFAGVQSS----- 123
Query: 99  XXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                    D     T    A++LNWP 
Sbjct: 124 -----------------------------------------DQAYASTGISVASYLNWPH 142
Query: 159 ATFASKVDKT--DGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
           A   + +     D +  ++RE++GG L+ +++  PAV++  L +N+PRYA+L  I ++
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQA 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1efv_B	255	Electron transfer flavoprotein; electron transport	3e-66
1efv_B	255	Electron transfer flavoprotein; electron transport	6e-13
1efp_B	252	ETF, protein (electron transfer flavoprotein); ele	2e-65
1efp_B	252	ETF, protein (electron transfer flavoprotein); ele	1e-13
1o97_C	264	Electron transferring flavoprotein beta-subunit; F	1e-62
1o97_C	264	Electron transferring flavoprotein beta-subunit; F	5e-10

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Length = 255

 Score =  204 bits (522), Expect = 3e-66
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 46/174 (26%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++GKQ       
Sbjct: 73  ETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------- 125

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AIDDD NQT QMTA FL+WPQ
Sbjct: 126 ---------------------------------------AIDDDCNQTGQMTAGFLDWPQ 146

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
            TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK
Sbjct: 147 GTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 200

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Length = 255

 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 92  KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           KAKKK I+ + P D+GVD  + + +++VEDPP R AG  V   + L 
Sbjct: 200 KAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLV 246

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Length = 252

 Score =  202 bits (516), Expect = 2e-65
 Identities = 77/174 (44%), Positives = 96/174 (55%), Gaps = 46/174 (26%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ET+RTALAMGADR I V  +    + ++P  ++KILA VA+ E  +++I GKQ       
Sbjct: 70  ETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------- 122

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AID+D N T QM AA L W Q
Sbjct: 123 ---------------------------------------AIDNDMNATGQMLAAILGWAQ 143

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
           ATFASKV+    +  V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMK 197

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Length = 252

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 92  KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           KAKKKP+ + +  D GVD    +E+V+V +P  R+AG  V  VD L 
Sbjct: 197 KAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELV 243

>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Length = 264

 Score =  195 bits (498), Expect = 1e-62
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 51/177 (28%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           E++R  LA GADR + V       E      + +IL +V ++E  DMV  G Q       
Sbjct: 71  ESLRKCLAKGADRAVRVWD--DAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ------- 121

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  + D     T    A++LNWP 
Sbjct: 122 ---------------------------------------SSDQAYASTGISVASYLNWPH 142

Query: 159 ATFASKV--DKTDGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMK 212
           A   + +     D +  ++RE++GG L+ +++  PAV++  L +N+PRYA+L  I +
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQ 199

>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Length = 264

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 92  KAKKKPIKKVSPKDMGVD------TGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           +A  KPI++VS  D+G+         +   +  +  P   +A  I   +   A
Sbjct: 199 QAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQA 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1efp_B	252	ETF, protein (electron transfer flavoprotein); ele	99.97
1efv_B	255	Electron transfer flavoprotein; electron transport	99.97
1o97_C	264	Electron transferring flavoprotein beta-subunit; F	99.97
1efv_B	255	Electron transfer flavoprotein; electron transport	99.54
1efp_B	252	ETF, protein (electron transfer flavoprotein); ele	99.53
1o97_D	320	Electron transferring flavoprotein alpha-subunit;	99.49
1efv_A	315	Electron transfer flavoprotein; electron transport	99.45
1o97_C	264	Electron transferring flavoprotein beta-subunit; F	99.44
3ih5_A	217	Electron transfer flavoprotein alpha-subunit; alph	99.35
1efp_A	307	ETF, protein (electron transfer flavoprotein); ele	99.3
3fet_A	166	Electron transfer flavoprotein subunit alpha RELA	99.17

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3

Probab=99.97  E-value=7.1e-31  Score=233.14  Aligned_cols=150  Identities=51%  Similarity=0.730  Sum_probs=140.4

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCc-CCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEY-ETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMG  107 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~-~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLg  107 (242)
                      ..++|+..+++.+|++++||||++++++. ++.| ++.||..+|++|++++++..||++|.|..                
T Consensus        60 av~~G~~~a~~~lr~ala~GaD~vi~v~~-d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~----------------  122 (252)
T 1efp_B           60 AVSIGVKQAAETLRTALAMGADRAILVVA-ADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ----------------  122 (252)
T ss_dssp             EEEEESGGGHHHHHHHHHHTCSEEEEEEC-CSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESC----------------
T ss_pred             EEEeCChhHHHHHHHHHhcCCCEEEEEec-ChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence            34788888999999999999999999942 6777 78999999999999999989999999998                


Q ss_pred             CCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEE
Q psy10640        108 VDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKV  187 (242)
Q Consensus       108 id~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~  187 (242)
                                                    ++|++.++++++||++|||||+|++++++.+++.++++|++++|.+++++
T Consensus       123 ------------------------------s~d~~~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~v~R~i~gG~~~v~~  172 (252)
T 1efp_B          123 ------------------------------AIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAV  172 (252)
T ss_dssp             ------------------------------CTTTCCCCHHHHHHHHHTCEEEEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred             ------------------------------ccCCchhhHHHHHHHHhCCCccccEEEEEEcCCeEEEEEEcCCcEEEEEE
Confidence                                          78989999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeeccc
Q psy10640        188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMK  225 (242)
Q Consensus       188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~  225 (242)
                      ++|+|+|++.+.|+||||||++||+|+++++++|+..+
T Consensus       173 ~~P~vvTv~~~~~~pR~~sl~~im~A~kk~i~~~~~~d  210 (252)
T 1efp_B          173 SLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAAD  210 (252)
T ss_dssp             ESSEEEEECTTSCCCCCCCHHHHHHHTTSCEEEEEGGG
T ss_pred             CCCEEEEEeCCCCCcCCCCHHHHHhhccCCeeEecHHH
Confidence            99999999999999999999999999999999997544

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*

Probab=99.97  E-value=7.6e-31  Score=233.73  Aligned_cols=148  Identities=61%  Similarity=0.929  Sum_probs=139.1

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCc-CCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEY-ETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMG  107 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~-~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLg  107 (242)
                      ..++|+..+++.||++++||||++++++. ++.| ++.||+.+|++|++++++..||++|.|..                
T Consensus        63 av~~G~~~a~~~lr~ala~GaD~vi~v~~-d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~----------------  125 (255)
T 1efv_B           63 AVSCGPAQCQETIRTALAMGADRGIHVEV-PPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ----------------  125 (255)
T ss_dssp             EEEEESTTHHHHHHHHHHHTCSEEEEEEC-CHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESC----------------
T ss_pred             EEEeCChhHHHHHHHHHhcCCCEEEEEec-ChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCc----------------
Confidence            34788888999999999999999999942 6667 78899999999999999989999999998                


Q ss_pred             CCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEE
Q psy10640        108 VDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKV  187 (242)
Q Consensus       108 id~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~  187 (242)
                                                    ++|++.++++++||++|||||+|++++++.+++.++++|++++|.+++++
T Consensus       126 ------------------------------s~d~d~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~v~R~i~gG~~~v~~  175 (255)
T 1efv_B          126 ------------------------------AIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRL  175 (255)
T ss_dssp             ------------------------------CTTTCCCCHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ------------------------------ccCCchhhHHHHHHHHhCCCcccceEEEEEcCCeEEEEEEcCCcEEEEEE
Confidence                                          78989999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeec
Q psy10640        188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQ  223 (242)
Q Consensus       188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~  223 (242)
                      ++|+|+|++.++|+||||||++||+|+++++++|+.
T Consensus       176 ~~P~VvTv~~~~~~pR~~sl~~im~A~kk~i~~~~~  211 (255)
T 1efv_B          176 KLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP  211 (255)
T ss_dssp             ESSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECH
T ss_pred             CCCEEEEEeCCCCCcCCCCHHHHHHhccCCeeEecH
Confidence            999999999999999999999999999999999974

>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*

Probab=99.97  E-value=3.2e-30  Score=230.32  Aligned_cols=150  Identities=29%  Similarity=0.492  Sum_probs=131.0

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..++|+..+++.+|++++||||+++++  +++.|++.||..+|++|++++++.+||++|.|-.                 
T Consensus        61 av~~G~~~~~~~lr~ala~GaD~vi~v--~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~-----------------  121 (264)
T 1o97_C           61 VVSVGPDRVDESLRKCLAKGADRAVRV--WDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ-----------------  121 (264)
T ss_dssp             EEEESCGGGHHHHHHHHHTTCSEEEEE--CCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESC-----------------
T ss_pred             EEEeCchhHHHHHHHHHhcCCCEEEEE--cCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCC-----------------
Confidence            447888889999999999999999999  5778899999999999999999989999999998                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEE--eCCEEEEEEEeCCe-EEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDK--TDGELTVKREIDGG-LETI  185 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~--~~~~~~v~r~~~~g-~~~~  185 (242)
                                                   ++|++.++++++||++|||||+|++++++.  +++.++++|++++| .+++
T Consensus       122 -----------------------------s~d~~~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~~~~~R~i~gG~~~~v  172 (264)
T 1o97_C          122 -----------------------------SSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEV  172 (264)
T ss_dssp             -----------------------------CTTTCCCCHHHHHHHHHTCCEEEEEEEEECCTTCSEEEEEEECGGGCEEEE
T ss_pred             -----------------------------ccCCchhhHHHHHHHHhCCCcccceEEEEEecCCCeEEEEEEcCCCcEEEE
Confidence                                         788899999999999999999999999998  88999999999999 9999


Q ss_pred             EEcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640        186 KVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV  226 (242)
Q Consensus       186 ~~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~  226 (242)
                      ++++|+|+|++.+.|+||||||++||+|+++++++|+..++
T Consensus       173 ~~~~P~vvTv~~~~~~pR~psl~~im~A~kk~i~~~~~~dl  213 (264)
T 1o97_C          173 EINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADI  213 (264)
T ss_dssp             EEESSCEEEECTTSSCCTTCC----------CCEEECTGGG
T ss_pred             EECCCEEEEEeCCCCCcCCCCHHHHHHhccCCeeEecHHHc
Confidence            99999999999999999999999999999999999975443

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*

Probab=99.54  E-value=1.7e-15  Score=134.88  Aligned_cols=111  Identities=23%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             CCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhc
Q psy10640          2 TGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEE   81 (242)
Q Consensus         2 t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~   81 (242)
                      |+.+++++|++||||++|.+.+++.+++.    ...+       |.-..+...++++.+..-+.++        . ++++
T Consensus       131 ~~~v~p~lA~~L~~~~vt~v~~l~~~~~~----~~v~-------R~i~gG~~~v~~~~P~VvTv~~--------~-~~~p  190 (255)
T 1efv_B          131 CNQTGQMTAGFLDWPQGTFASQVTLEGDK----LKVE-------REIDGGLETLRLKLPAVVTADL--------R-LNEP  190 (255)
T ss_dssp             CCCHHHHHHHHHTCCEEEEEEEEEEETTE----EEEE-------EEETTEEEEEEEESSEEEEECG--------G-GCCC
T ss_pred             hhhHHHHHHHHhCCCcccceEEEEEcCCe----EEEE-------EEcCCcEEEEEECCCEEEEEeC--------C-CCCc
Confidence            57899999999999999999999876542    2222       3333334445555443333333        1 4567


Q ss_pred             CCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecC
Q psy10640         82 KVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPD  133 (242)
Q Consensus        82 ~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~iled  133 (242)
                      || ++|+|||+||||||++|+++|||++.++++++.++++|++|+.|.++++
T Consensus       191 R~-~sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~i~~  241 (255)
T 1efv_B          191 RY-ATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET  241 (255)
T ss_dssp             CC-CCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSS
T ss_pred             CC-CCHHHHHHhccCCeeEecHHHcCCCCCCCeEEEEEecCCCCcCCEEECC
Confidence            99 9999999999999999999999999999999999999999999998754

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3

Probab=99.53  E-value=2.4e-15  Score=133.37  Aligned_cols=111  Identities=25%  Similarity=0.255  Sum_probs=84.9

Q ss_pred             CCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhc
Q psy10640          2 TGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEE   81 (242)
Q Consensus         2 t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~   81 (242)
                      ++.+++++|++||||++|.+.+++.+++.    ...+       |.-..+...++++.+..-+.++        . ++++
T Consensus       128 ~~~v~p~lA~~L~~~~vt~v~~l~~~~~~----~~v~-------R~i~gG~~~v~~~~P~vvTv~~--------~-~~~p  187 (252)
T 1efp_B          128 MNATGQMLAAILGWAQATFASKVEIEGAK----AKVT-------REVDGGLQTIAVSLPAVVTADL--------R-LNEP  187 (252)
T ss_dssp             CCCHHHHHHHHHTCEEEEEEEEEEECSSE----EEEE-------EEETTEEEEEEEESSEEEEECT--------T-SCCC
T ss_pred             hhhHHHHHHHHhCCCccccEEEEEEcCCe----EEEE-------EEcCCcEEEEEECCCEEEEEeC--------C-CCCc
Confidence            57899999999999999999999876542    2222       3222333344444433322222        1 4567


Q ss_pred             CCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecC
Q psy10640         82 KVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPD  133 (242)
Q Consensus        82 ~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~iled  133 (242)
                      || ++|+|||+||||||++|+++|||++..+++++.++++|++|+.|.++++
T Consensus       188 R~-~sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~~~  238 (252)
T 1efp_B          188 RY-ASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGS  238 (252)
T ss_dssp             CC-CCHHHHHHHTTSCEEEEEGGGGTCCCCCSEEEEEEECCCCCCCCEECSS
T ss_pred             CC-CCHHHHHhhccCCeeEecHHHcCCCCCCCcEEEEEecCCCCcCcEEECC
Confidence            99 9999999999999999999999999889999999999999999988754

>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*

Probab=99.49  E-value=4e-14  Score=129.61  Aligned_cols=120  Identities=14%  Similarity=0.093  Sum_probs=104.7

Q ss_pred             cccCcchHHHHHHH-HHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         30 SQQHTITQRETIRT-ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        30 ~~~~~~~a~e~Lr~-aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..+|+. ++ .+++ ++++|+|+.+++  +++.| +.++..++++|++++++.+||++|.+-.                 
T Consensus        39 v~~G~~-~~-~~~~~a~a~GaDkv~~v--~d~~l-~~~~~~~a~~La~~i~~~~pdlVL~g~t-----------------   96 (320)
T 1o97_D           39 AVIGSQ-AD-AFVPALSVNGVDELVVV--KGSSI-DFDPDVFEASVSALIAAHNPSVVLLPHS-----------------   96 (320)
T ss_dssp             EEESTT-GG-GGHHHHCBTTCSEEEEE--ECSCS-SCCHHHHHHHHHHHHHHHCCSEEEEECS-----------------
T ss_pred             EEECCc-HH-HHHHHHHhcCCceEEEE--eCccc-CCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------------
Confidence            466766 56 8898 889999999999  46778 8899999999999999999999999985                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIK  186 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~  186 (242)
                                                   + ++  .++++++|++|+||++|++++++.+++.++++|.+.+|.  .+++
T Consensus        97 -----------------------------s-~G--~~laprlAa~L~~~~vtdv~~l~~~~~~l~~~R~~~gG~~~~ti~  144 (320)
T 1o97_D           97 -----------------------------V-DS--LGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVD  144 (320)
T ss_dssp             -----------------------------H-HH--HTTHHHHHHTSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred             -----------------------------C-ch--hhHHHHHHHHhCCCccccEEEEEecCCeEEEEEEcCCCEEEEEEE
Confidence                                         2 33  699999999999999999999999887899999999995  4555


Q ss_pred             Ec-C-CeEEEEeCCCCCCC
Q psy10640        187 VK-L-PAVISADLRLNEPR  203 (242)
Q Consensus       187 ~~-l-Pavis~~~~~~~pr  203 (242)
                      ++ . |+|+|+..+.++|+
T Consensus       145 ~~~~~p~viTVr~~~f~~~  163 (320)
T 1o97_D          145 FPGKSTVVLTIRPSVFKPL  163 (320)
T ss_dssp             CTTCSCEEEEECTTSSCCC
T ss_pred             ecCCCCEEEEEcCCCCCCC
Confidence            54 5 99999999999987

>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*

Probab=99.45  E-value=1.5e-13  Score=125.68  Aligned_cols=120  Identities=17%  Similarity=0.107  Sum_probs=105.0

Q ss_pred             cccCcchHHHHHHHH-HHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         30 SQQHTITQRETIRTA-LAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        30 ~~~~~~~a~e~Lr~a-La~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..+|+. +++.++++ +++|+|+.+++  +++.|++.++..++++|++++++.+||++|.+-.                 
T Consensus        36 v~~G~~-~~~~~~~a~~a~GaDkv~~v--~d~~l~~~~~~~~a~~La~li~~~~pdlVL~g~t-----------------   95 (315)
T 1efv_A           36 LVAGTK-CDKVAQDLCKVAGIAKVLVA--QHDVYKGLLPEELTPLILATQKQFNYTHICAGAS-----------------   95 (315)
T ss_dssp             EEEESC-CHHHHHHHHHSTTCCEEEEE--ECGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESS-----------------
T ss_pred             EEECCc-hHHHHHHHHHhcCCCEEEEe--cCchhccCCHHHHHHHHHHHHHhcCCCEEEEcCC-----------------
Confidence            466766 78899999 89999999999  5678888999999999999999999999999885                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCe--EEEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGG--LETIK  186 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g--~~~~~  186 (242)
                                                   + ++  .++++++|+.|+||++|++++++.++   +++|.+.+|  ..+++
T Consensus        96 -----------------------------s-~G--~~laprlAa~L~~~~vtdv~~l~~~~---~~~R~~~gG~~~~tv~  140 (315)
T 1efv_A           96 -----------------------------A-FG--KNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVK  140 (315)
T ss_dssp             -----------------------------H-HH--HHHHHHHHHHHTCCCEEEECEEEETT---EEEEEETTTTEEEEEE
T ss_pred             -----------------------------C-Cc--chHHHHHHHHhCCCccccEEEeccCC---EEEEEcCCCEEEEEEE
Confidence                                         2 33  69999999999999999999998866   899999999  56677


Q ss_pred             Ec-CCeEEEEeCCCCCCCC
Q psy10640        187 VK-LPAVISADLRLNEPRY  204 (242)
Q Consensus       187 ~~-lPavis~~~~~~~pr~  204 (242)
                      ++ .|+|+|+..+.++|.-
T Consensus       141 ~~~~p~viTVr~~~f~~~~  159 (315)
T 1efv_A          141 CDEKVKVFSVRGTSFDAAA  159 (315)
T ss_dssp             ECCSSEEEEECGGGSCCCC
T ss_pred             eCCCCeEEEEcCCCCCCCC
Confidence            74 7999999999888644

>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*

Probab=99.44  E-value=3.8e-14  Score=126.49  Aligned_cols=123  Identities=16%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             CCchhHHHHHHhCCcccccccceee--ccccccCcchHHHHHHHHHHcCCCe-EEEEeecCCCcCCCCHHHHHHHHHHHH
Q psy10640          2 TGAFPSIWRQRQGIRQFTTSSSLSE--AEKSQQHTITQRETIRTALAMGADR-GIHVEVSGPEYETLQPFHISKILAKVA   78 (242)
Q Consensus         2 t~~~~~~~~~~~~~~~~t~~~~l~~--~~~~~~~~~~a~e~Lr~aLa~GaD~-~~~v~~~~~~~~~~~p~~~A~vLa~~i   78 (242)
                      |+.+++++|++||||++|.+.+++.  +++.    ...+       |.-..+ ...++++.+..-+.++        . +
T Consensus       127 ~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~----~~~~-------R~i~gG~~~~v~~~~P~vvTv~~--------~-~  186 (264)
T 1o97_C          127 YASTGISVASYLNWPHAAVVADLQYKPGDNK----AVIR-------RELEGGMLQEVEINCPAVLTIQL--------G-I  186 (264)
T ss_dssp             CCCHHHHHHHHHTCCEEEEEEEEECCTTCSE----EEEE-------EECGGGCEEEEEEESSCEEEECT--------T-S
T ss_pred             hhhHHHHHHHHhCCCcccceEEEEEecCCCe----EEEE-------EEcCCCcEEEEEECCCEEEEEeC--------C-C
Confidence            5789999999999999999999987  5432    1222       222222 3344444443333322        1 4


Q ss_pred             HhcCCCcchhhhhhhcCCCcceeCCCCCCCCC---c---CceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHH
Q psy10640         79 QEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDT---G---AHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAA  152 (242)
Q Consensus        79 ~~~~yd~iL~gImkAKKKpIe~vslaDLgid~---s---~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~  152 (242)
                      .++|| ++|+|||+||||||++|+++|||+++   .   +++++.+++.|++|+. .++        +++.++.+..|.+
T Consensus       187 ~~pR~-psl~~im~A~kk~i~~~~~~dl~~~~~~~~l~g~~~~v~~~~~p~~~~~-~~~--------~~~~~e~~~~l~~  256 (264)
T 1o97_C          187 NKPRY-ASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRA-TMI--------EGTISEQAAKIIQ  256 (264)
T ss_dssp             SCCTT-CC----------CCEEECTGGGTCCGGGSSGGGSSSEEEEEECCCCCCC-EEC--------CSCHHHHHHHHHH
T ss_pred             CCcCC-CCHHHHHHhccCCeeEecHHHcCcChhhccccCCCcEEEEEecCCCCcc-EEE--------CCChHHHHHHHHH
Confidence            56799 99999999999999999999999863   3   7899999999988887 665        3444677888888


Q ss_pred             Hh
Q psy10640        153 FL  154 (242)
Q Consensus       153 ~L  154 (242)
                      +|
T Consensus       257 ~L  258 (264)
T 1o97_C          257 II  258 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=1.4e-12  Score=113.14  Aligned_cols=123  Identities=15%  Similarity=0.119  Sum_probs=103.5

Q ss_pred             ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCC
Q psy10640         31 QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDT  110 (242)
Q Consensus        31 ~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~  110 (242)
                      .+|+. +++.+++++++|||+.+++  +++.|+..++..++++|++++++.+||++|.+-.                   
T Consensus        43 ~~G~~-~~~~~~~~~~~Gad~v~~v--~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t-------------------  100 (217)
T 3ih5_A           43 VAGTG-LKEIEKQILPYGVDKLHVF--DAEGLYPYTSLPHTSILVNLFKEEQPQICLMGAT-------------------  100 (217)
T ss_dssp             EEESC-CTTTHHHHGGGTCSEEEEE--ECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECS-------------------
T ss_pred             EECCC-HHHHHHHHHhcCCCEEEEe--cCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------------------
Confidence            44554 5678899999999999999  5678889999999999999999999999998864                   


Q ss_pred             cCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCC-----------EEEEEEEeC
Q psy10640        111 GAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDG-----------ELTVKREID  179 (242)
Q Consensus       111 s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~-----------~~~v~r~~~  179 (242)
                                                  ..+  .+++++||..|+||+++.+++++.+++           .++++|.+.
T Consensus       101 ----------------------------~~G--~~laprlAa~L~~~~~sdv~~l~~~~~~~~~~~~~~~~~l~~~Rp~~  150 (217)
T 3ih5_A          101 ----------------------------VIG--RDLGPRVSSALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAF  150 (217)
T ss_dssp             ----------------------------HHH--HHHHHHHHHHTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESS
T ss_pred             ----------------------------cch--hhHHHHHHHHhCCCccceEEEEEecCCccccccccccccEEEEEECC
Confidence                                        223  589999999999999999999998654           599999999


Q ss_pred             CeEE--EEEEc--CCeEEEEeCCCCCCCCC
Q psy10640        180 GGLE--TIKVK--LPAVISADLRLNEPRYA  205 (242)
Q Consensus       180 ~g~~--~~~~~--lPavis~~~~~~~pr~~  205 (242)
                      +|..  +++++  .|+|+++..+..+|.-+
T Consensus       151 gG~~~ati~~~~~~p~v~TVr~~~f~~~~~  180 (217)
T 3ih5_A          151 GGNIVATIVNPEHRPQMATVREGVMKKEIV  180 (217)
T ss_dssp             SSSCEEEECCSSSSSEEEEECTTSSCCCCS
T ss_pred             CCEEEEEEEecCCCCEEEEECCCCCCcCcC
Confidence            9964  55554  79999999988776543

>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2

Probab=99.30  E-value=2.1e-12  Score=117.60  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=99.4

Q ss_pred             cccCcchHHHH-HHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         30 SQQHTITQRET-IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        30 ~~~~~~~a~e~-Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..+|+. +++. .+.++++|+|+.+++  +++.|++.++..++++|+++  +.+||++|.+-.                 
T Consensus        34 v~~G~~-~~~~~~~~a~a~GaDkv~~v--~d~~l~~~~~~~~a~~La~~--~~~pd~VL~g~t-----------------   91 (307)
T 1efp_A           34 LCAGAS-AKAAAEEAAKIAGVAKVLVA--EDALYGHRLAEPTAALIVGL--AGDYSHIAAPAT-----------------   91 (307)
T ss_dssp             EEEETT-CHHHHHHHHTSTTEEEEEEE--ECGGGTTCCHHHHHHHHHHH--HTTCSEEEEESS-----------------
T ss_pred             EEECCc-hHHHHHHHHHhcCCCEEEEe--cCchhccCCHHHHHHHHHHH--ccCCCEEEEeCC-----------------
Confidence            466766 5555 668889999999999  56788899999999999997  558999999875                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCe--EEEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGG--LETIK  186 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g--~~~~~  186 (242)
                                                   + ++  .++++++|+.|+||++|++++++.++   +++|.+.+|  ..+++
T Consensus        92 -----------------------------s-~G--~~laprlAa~L~~~~vtdv~~l~~~~---~~~R~~~gG~~~~tv~  136 (307)
T 1efp_A           92 -----------------------------T-DA--KNVMPRVAALLDVMVLSDVSAILDAD---TFERPIYAGNAIQVVK  136 (307)
T ss_dssp             -----------------------------H-HH--HHHHHHHHHHTTCCEEEEESEECSSS---EEEEEEGGGTEEEEEE
T ss_pred             -----------------------------c-ch--hhHHHHHHHHhCCCccccEEEEccCC---EEEEECCCCEEEEEEE
Confidence                                         2 33  79999999999999999999998765   899999999  46677


Q ss_pred             Ec-CCeEEEEeCCCCCCC
Q psy10640        187 VK-LPAVISADLRLNEPR  203 (242)
Q Consensus       187 ~~-lPavis~~~~~~~pr  203 (242)
                      ++ +|+|+|+..+.++|.
T Consensus       137 ~~~~p~viTVr~~~f~~~  154 (307)
T 1efp_A          137 SKDAKKVFTIRTASFDAA  154 (307)
T ss_dssp             ECSSSEEEEECGGGSCCC
T ss_pred             eCCCCEEEEEcCCCCCCC
Confidence            76 999999999988876

>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}

Probab=99.17  E-value=8.6e-11  Score=98.33  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=85.4

Q ss_pred             CCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCC
Q psy10640         48 GADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQA  127 (242)
Q Consensus        48 GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~a  127 (242)
                      |||+.++++ +    +. ++..++++|+++++  +||++|.+--                                    
T Consensus        43 Gad~v~~v~-~----~~-~~e~~a~~l~~~~~--~p~~Vl~g~t------------------------------------   78 (166)
T 3fet_A           43 GSKVLYRAK-K----GT-PFDAVSEGILKIAG--NYDYIAIGST------------------------------------   78 (166)
T ss_dssp             CCSEEEEEC-T----TC-CHHHHHHHHHHHHT--TCSEEEEECS------------------------------------
T ss_pred             CCCEEEEeC-C----CC-ChHHHHHHHHHHHc--CCCEEEEcCC------------------------------------
Confidence            999999995 2    22 57789999999887  8999998853                                    


Q ss_pred             ceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEcCCeEEEEeCCCCCCC
Q psy10640        128 GSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVKLPAVISADLRLNEPR  203 (242)
Q Consensus       128 G~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~lPavis~~~~~~~pr  203 (242)
                                 .++  .+++++||+.|+||++|++++++.+++.++++|.+.+|.  +++++++| |+++..+.++|+
T Consensus        79 -----------~~g--~~vaprlAa~L~~~~~sdv~~l~~~~~~~~~~R~~~gG~~~~tv~~~~p-v~Tvr~~~f~~~  142 (166)
T 3fet_A           79 -----------EVG--REIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESDAR-ILTVAPGVIEAK  142 (166)
T ss_dssp             -----------HHH--HHHHHHHHHHHCCCEEEEEEEEEESSSSEEEEEEEGGGTEEEEEEECCC-EEEECTTSSCCC
T ss_pred             -----------Ccc--ccHHHHHHHHhCCCceeeEEEEEecCCEEEEEEEccCCEEEEEEEeCCC-EEEECCCCCCCC
Confidence                       233  589999999999999999999999888999999999994  68999999 999999988854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1efpb_	246	c.26.2.3 (B:) Small, beta subunit of electron tran	4e-29
d1efpb_	246	c.26.2.3 (B:) Small, beta subunit of electron tran	4e-10
d1efvb_	252	c.26.2.3 (B:) Small, beta subunit of electron tran	5e-29
d1efvb_	252	c.26.2.3 (B:) Small, beta subunit of electron tran	1e-10
d3clsc1	262	c.26.2.3 (C:1-262) Small, beta subunit of electron	3e-16
d3clsc1	262	c.26.2.3 (C:1-262) Small, beta subunit of electron	4e-04

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

 Score =  107 bits (269), Expect = 4e-29
 Identities = 77/177 (43%), Positives = 98/177 (55%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
            ET+RTALAMGADR I V  +    + ++P  ++KILA VA+ E  +++I GKQ      
Sbjct: 69  AETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------ 122

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AID+D N T QM AA L W 
Sbjct: 123 ----------------------------------------AIDNDMNATGQMLAAILGWA 142

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           QATFASKV+    +  V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK++
Sbjct: 143 QATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAK 199

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.8 bits (134), Expect = 4e-10
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 84  DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
              +    KAKKKP+ + +  D GVD    +E+V+V +P  R+AG  V  VD L 
Sbjct: 189 YASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELV 243

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 5e-29
 Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
           +ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++GKQ      
Sbjct: 69  QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 122

Query: 98  IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
                                                   AIDDD NQT QMTA FL+WP
Sbjct: 123 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 142

Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
           Q TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 143 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 199

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 84  DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
              +    KAKKK I+ + P D+GVD  + + +++VEDPP R AG  V   + L 
Sbjct: 189 YATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLV 243

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Length = 262

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Methylophilus methylotrophus [TaxId: 17]

 Score = 73.6 bits (180), Expect = 3e-16
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 51/178 (28%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           E++R  LA GADR + V       E      + +IL +V ++E  DMV  G Q       
Sbjct: 71  ESLRKCLAKGADRAVRVW--DDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ------- 121

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  + D     T    A++LNWP 
Sbjct: 122 ---------------------------------------SSDQAYASTGISVASYLNWPH 142

Query: 159 ATFASKVDKT--DGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
           A   + +     D +  ++RE++GG L+ +++  PAV++  L +N+PRYA+L  I ++
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQA 200

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Length = 262

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Methylophilus methylotrophus [TaxId: 17]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 89  GKQKAKKKPIKKVSPKDMGVDT------GAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           G ++A  KPI++VS  D+G+         +   +  +  P   +A  I   +   A
Sbjct: 196 GIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQA 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1efpb_	246	Small, beta subunit of electron transfer flavoprot	100.0
d3clsc1	262	Small, beta subunit of electron transfer flavoprot	100.0
d1efvb_	252	Small, beta subunit of electron transfer flavoprot	100.0
d1efvb_	252	Small, beta subunit of electron transfer flavoprot	99.67
d1efpb_	246	Small, beta subunit of electron transfer flavoprot	99.65
d3clsc1	262	Small, beta subunit of electron transfer flavoprot	99.53
d3clsd1	192	Large, alpha subunit of electron transfer flavopro	98.71
d1efva1	188	Large, alpha subunit of electron transfer flavopro	97.7
d1efpa1	183	Large, alpha subunit of electron transfer flavopro	95.78

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=8.7e-37  Score=269.48  Aligned_cols=149  Identities=52%  Similarity=0.725  Sum_probs=143.7

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..++|+..+++.||+||+||||++++|..+++.+++.|++++|++||+++++.+||++|+|.+                 
T Consensus        60 vls~Gp~~a~~~lr~alAmGaD~avli~~~~~~~~~~d~~ata~~la~~~~~~~~DLIl~G~~-----------------  122 (246)
T d1efpb_          60 AVSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ-----------------  122 (246)
T ss_dssp             EEEEESGGGHHHHHHHHHHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESC-----------------
T ss_pred             EEEecCcchHHHHHHHHhhcCChheEEeeccccccccCHHHHHHHHHHHHhhcCCCEEEEEee-----------------
Confidence            358999999999999999999999999777778899999999999999999999999999998                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEc
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVK  188 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~  188 (242)
                                                   |.|++.+++|.+||++|||||+|+|++++++++.++|+|++++|.|+++++
T Consensus       123 -----------------------------s~D~~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~i~v~R~~e~g~e~v~~~  173 (246)
T d1efpb_         123 -----------------------------AIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVS  173 (246)
T ss_dssp             -----------------------------CTTTCCCCHHHHHHHHHTCEEEEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             -----------------------------eccccccchhHHHHHHhhccceeEEEEEEEcCCEEEEEEEccCCEEEEEec
Confidence                                         899999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCCCCCChHHHHhhcCccceeeec
Q psy10640        189 LPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQ  223 (242)
Q Consensus       189 lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~  223 (242)
                      |||||+++.++|+||||||++||+|++++++.|+.
T Consensus       174 lPavltv~~~~n~PR~pslk~im~A~kk~i~~~~~  208 (246)
T d1efpb_         174 LPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTA  208 (246)
T ss_dssp             SSEEEEECTTSCCCCCCCHHHHHHHTTSCEEEEEG
T ss_pred             CCeEEEEecCCCCcccccHHHHHHHhcCCceEcCH
Confidence            99999999999999999999999999999999974

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Methylophilus methylotrophus [TaxId: 17]

Probab=100.00  E-value=4.8e-36  Score=266.44  Aligned_cols=150  Identities=29%  Similarity=0.494  Sum_probs=133.9

Q ss_pred             ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640         29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV  108 (242)
Q Consensus        29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi  108 (242)
                      ..++|+..+++.||+|||||||++++|  +|+.+++.|++.||++||+++++..||++|+|.+                 
T Consensus        61 vvt~Gp~~a~~~Lr~alAmGaD~avli--~d~~~~~~d~~~tA~~lA~~i~~~~~DLIl~G~~-----------------  121 (262)
T d3clsc1          61 VVSVGPDRVDESLRKCLAKGADRAVRV--WDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ-----------------  121 (262)
T ss_dssp             EEEESCTTHHHHHHHHHHTTCSEEEEE--CCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESC-----------------
T ss_pred             EEeccchhHHHHHHHHHhcCCCeeEEE--eccccccchHHHHHHHHHHHhhccCCcEEEEeee-----------------
Confidence            358999999999999999999999999  6789999999999999999999999999999998                 


Q ss_pred             CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEe--CCEEEEEEEeCCe-EEEE
Q psy10640        109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKT--DGELTVKREIDGG-LETI  185 (242)
Q Consensus       109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~--~~~~~v~r~~~~g-~~~~  185 (242)
                                                   |.|++.+++|.++|++|||||+|+|++++++  ++.++++|++++| .|++
T Consensus       122 -----------------------------s~D~~~gqvg~~lAe~Lg~P~vt~v~~i~~~~~~~~~~v~R~~e~g~~e~v  172 (262)
T d3clsc1         122 -----------------------------SSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEV  172 (262)
T ss_dssp             -----------------------------CTTTCCCCHHHHHHHHHTCCEEEEEEEEECCTTCSEEEEEEEETTTEEEEE
T ss_pred             -----------------------------ccCCCcchHHHHHHHHcCCceEEEEEEEeecCCCceEEEEEEeCCCeEEEE
Confidence                                         8999999999999999999999999999986  6789999999988 5999


Q ss_pred             EEcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640        186 KVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV  226 (242)
Q Consensus       186 ~~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~  226 (242)
                      +++||||||++.++|+||||||++||+|+++++++|+..++
T Consensus       173 ~~~lPavitv~~~~n~PR~pslk~im~A~kk~i~~~~~~dl  213 (262)
T d3clsc1         173 EINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADI  213 (262)
T ss_dssp             EEESSCEEEECTTSSCCTTCC--------CCCCEEECTGGG
T ss_pred             EecCcEEEEEecCcCcccCCCHHHHHHhccCCeeEecHHHc
Confidence            99999999999999999999999999999999999975543

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=261.16  Aligned_cols=154  Identities=60%  Similarity=0.895  Sum_probs=142.1

Q ss_pred             cccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCC
Q psy10640         30 SQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVD  109 (242)
Q Consensus        30 ~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid  109 (242)
                      +++|+..+++.||+||+||+|++++++..+..+.+.|++.+++++++++++.+||++|+|.+                  
T Consensus        61 ~~~gp~~a~~~lr~ala~Gad~avli~~~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl~G~~------------------  122 (252)
T d1efvb_          61 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------------------  122 (252)
T ss_dssp             EEEESTTHHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESC------------------
T ss_pred             EEecchhHHHHHHHHHhcCCcceEEEEecccccccccHHHHHHHHHHHHhccCCCEEEEecc------------------
Confidence            57889999999999999999999999644334557789999999999999889999999999                  


Q ss_pred             CcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEcC
Q psy10640        110 TGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKL  189 (242)
Q Consensus       110 ~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~l  189 (242)
                                                  |.|++.+++|++||++|||||+|+|++++++++.++|+|++++|.|+++++|
T Consensus       123 ----------------------------s~D~~tgqVg~~lAe~Lg~P~vt~v~~i~~~~~~i~v~R~~e~g~e~ve~~l  174 (252)
T d1efvb_         123 ----------------------------AIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKL  174 (252)
T ss_dssp             ----------------------------CTTTCCCCHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEETTEEEEEEEES
T ss_pred             ----------------------------chhccCCcHHHHHHHhcCCCceeEEEEEEEECCEEEEEEEcCCcEEEEEecC
Confidence                                        8999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCCCChHHHHhhcCccceeeec--ccCCCC
Q psy10640        190 PAVISADLRLNEPRYATLPNIMKSQVFCGQILNQ--MKVKPP  229 (242)
Q Consensus       190 Pavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~--~~~~~~  229 (242)
                      |||||++.++|+||||||++||+|+++++++|+.  +++++.
T Consensus       175 Pavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~~~~  216 (252)
T d1efvb_         175 PAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLT  216 (252)
T ss_dssp             SEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCC
T ss_pred             CEEEEeecCcCccCccchhhHHHhccCCcEEeCHHHcCCCcC
Confidence            9999999999999999999999999999999974  444443

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.2e-18  Score=147.64  Aligned_cols=115  Identities=23%  Similarity=0.237  Sum_probs=97.0

Q ss_pred             CCCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE   80 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~   80 (242)
                      .||++|+++||+||||++|.+.+++.+++.    ..++       |...++.-.++++.+..-+.+.        . +++
T Consensus       127 ~tgqVg~~lAe~Lg~P~vt~v~~i~~~~~~----i~v~-------R~~e~g~e~ve~~lPavitv~~--------~-~n~  186 (252)
T d1efvb_         127 DCNQTGQMTAGFLDWPQGTFASQVTLEGDK----LKVE-------REIDGGLETLRLKLPAVVTADL--------R-LNE  186 (252)
T ss_dssp             CCCCHHHHHHHHHTCCEEEEEEEEEEETTE----EEEE-------EEETTEEEEEEEESSEEEEECG--------G-GCC
T ss_pred             cCCcHHHHHHHhcCCCceeEEEEEEEECCE----EEEE-------EEcCCcEEEEEecCCEEEEeec--------C-cCc
Confidence            489999999999999999999999988765    5566       6777777777777754433222        2 677


Q ss_pred             cCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCccc
Q psy10640         81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDT  136 (242)
Q Consensus        81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~  136 (242)
                      +|| |+|++||+||||||++|+++|||++..+++++.+++.|++|+.|.+++++++
T Consensus       187 PR~-psl~~im~A~kk~i~~~~~~dlg~~~~s~~~v~~~~~p~~~~~g~~ie~~~~  241 (252)
T d1efvb_         187 PRY-ATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTED  241 (252)
T ss_dssp             CCC-CCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSSHHH
T ss_pred             cCc-cchhhHHHhccCCcEEeCHHHcCCCcCCCcEEEEEEcCCCCCCCeEeeCHHH
Confidence            899 9999999999999999999999999999999999999999999999875443

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.8e-17  Score=145.19  Aligned_cols=116  Identities=27%  Similarity=0.269  Sum_probs=95.3

Q ss_pred             CCCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE   80 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~   80 (242)
                      .||++|+++||+||||++|.+.+++.++..    ..++       |...++.-.++++.+..-+.+.        . +++
T Consensus       127 ~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~----i~v~-------R~~e~g~e~v~~~lPavltv~~--------~-~n~  186 (246)
T d1efpb_         127 DMNATGQMLAAILGWAQATFASKVEIEGAK----AKVT-------REVDGGLQTIAVSLPAVVTADL--------R-LNE  186 (246)
T ss_dssp             CCCCHHHHHHHHHTCEEEEEEEEEEECSSE----EEEE-------EEETTEEEEEEEESSEEEEECT--------T-SCC
T ss_pred             cccchhHHHHHHhhccceeEEEEEEEcCCE----EEEE-------EEccCCEEEEEecCCeEEEEec--------C-CCC
Confidence            489999999999999999999999987765    4555       6666776677777644332221        2 667


Q ss_pred             cCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCcccc
Q psy10640         81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL  137 (242)
Q Consensus        81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~L  137 (242)
                      +|| |+|++||+||||||++|+++|||++.++.+++.+++.|++|++|.++.+++++
T Consensus       187 PR~-pslk~im~A~kk~i~~~~~~dlgl~~~~~~~v~~~~~p~~r~~~~~~~~~~El  242 (246)
T d1efpb_         187 PRY-ASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDEL  242 (246)
T ss_dssp             CCC-CCHHHHHHHTTSCEEEEEGGGGTCCCCCSEEEEEEECCCCCCCCEECSSHHHH
T ss_pred             ccc-ccHHHHHHHhcCCceEcCHHHcCCCCCCceEEEEEecCCCCcCCeEeCCHHHH
Confidence            899 99999999999999999999999998999999999999999999877655443

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Methylophilus methylotrophus [TaxId: 17]

Probab=99.53  E-value=1.5e-15  Score=133.74  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=82.6

Q ss_pred             CCCchhHHHHHHhCCcccccccceeeccc-cccCcchHHHHHHHHHHcCCCeE-EEEeecCCCcCCCCHHHHHHHHHHHH
Q psy10640          1 MTGAFPSIWRQRQGIRQFTTSSSLSEAEK-SQQHTITQRETIRTALAMGADRG-IHVEVSGPEYETLQPFHISKILAKVA   78 (242)
Q Consensus         1 ~t~~~~~~~~~~~~~~~~t~~~~l~~~~~-~~~~~~~a~e~Lr~aLa~GaD~~-~~v~~~~~~~~~~~p~~~A~vLa~~i   78 (242)
                      .||.+|+++|++||||++|.+.+++.... ..   ..++       |.-.++. -.++++.+..-+.+.        . +
T Consensus       126 ~~gqvg~~lAe~Lg~P~vt~v~~i~~~~~~~~---~~v~-------R~~e~g~~e~v~~~lPavitv~~--------~-~  186 (262)
T d3clsc1         126 AYASTGISVASYLNWPHAAVVADLQYKPGDNK---AVIR-------RELEGGMLQEVEINCPAVLTIQL--------G-I  186 (262)
T ss_dssp             CCCCHHHHHHHHHTCCEEEEEEEEECCTTCSE---EEEE-------EEETTTEEEEEEEESSCEEEECT--------T-S
T ss_pred             CcchHHHHHHHHcCCceEEEEEEEeecCCCce---EEEE-------EEeCCCeEEEEEecCcEEEEEec--------C-c
Confidence            48999999999999999999999987532 10   2222       3333333 245555544332221        1 6


Q ss_pred             HhcCCCcchhhhhhhcCCCcceeCCCCCCCCCc------CceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHH
Q psy10640         79 QEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTG------AHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAA  152 (242)
Q Consensus        79 ~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s------~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~  152 (242)
                      +++|| |+|+|||+||||||++|+++|||+++.      +.+++.+.+.|+ |+.|.++        +++..+.+.+|++
T Consensus       187 n~PR~-pslk~im~A~kk~i~~~~~~dlg~~~~~~g~~~s~t~v~~~~~P~-~~~~~~i--------~g~~~e~a~~l~~  256 (262)
T d3clsc1         187 NKPRY-ASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPE-KGRATMI--------EGTISEQAAKIIQ  256 (262)
T ss_dssp             SCCTT-CC--------CCCCEEECTGGGTCCGGGSSGGGSSSEEEEEECCC-CCCCEEC--------CSCHHHHHHHHHH
T ss_pred             CcccC-CCHHHHHHhccCCeeEecHHHcCCCHHHccccCCcEEEEEEcCCC-CCCceEE--------eCCHHHHHHHHHH
Confidence            77899 999999999999999999999998844      577888887664 6667775        4555788888988


Q ss_pred             Hh
Q psy10640        153 FL  154 (242)
Q Consensus       153 ~L  154 (242)
                      +|
T Consensus       257 ~L  258 (262)
T d3clsc1         257 II  258 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Methylophilus methylotrophus [TaxId: 17]

Probab=98.71  E-value=3.7e-08  Score=80.82  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEE
Q psy10640         37 QRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEI  116 (242)
Q Consensus        37 a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv  116 (242)
                      .++..+++-+.|+|+.++++  +..+ ..+|...+.++++++++.+||++|.+--                         
T Consensus        45 ~~~~~~~l~~~Ga~~v~~~~--~~~~-~~~~~~~~~al~~~~~~~~p~~Vl~~~t-------------------------   96 (192)
T d3clsd1          45 ADAFVPALSVNGVDELVVVK--GSSI-DFDPDVFEASVSALIAAHNPSVVLLPHS-------------------------   96 (192)
T ss_dssp             GGGGHHHHCBTTCSEEEEEE--CSCS-SCCHHHHHHHHHHHHHHHCCSEEEEESS-------------------------
T ss_pred             hHHHHhhhhhcCceEEEEec--Cccc-ccCHHHHHHHHHHHHhhcccceEEecCC-------------------------
Confidence            34455566678999999985  3444 3678889999999999989988876532                         


Q ss_pred             EEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEc--CCeE
Q psy10640        117 VTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVK--LPAV  192 (242)
Q Consensus       117 ~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~--lPav  192 (242)
                                            ..+  .+++++||..|++|+++.+.+++.+++.++++|.+.+|.  .+++++  -|+|
T Consensus        97 ----------------------~~g--rdlaprlAa~L~~~~vsdv~~l~~~~~~~~~~r~~~~G~~~a~~~~~~~~~~v  152 (192)
T d3clsd1          97 ----------------------VDS--LGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVV  152 (192)
T ss_dssp             ----------------------HHH--HTTHHHHHHHSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEE
T ss_pred             ----------------------hhH--HHHHHHHHHhhCcCeecceEEEEecCCceEEEEeccCCeEEEEEEecCCCCEE
Confidence                                  122  578899999999999999999999999999999999995  455553  4899


Q ss_pred             EEEeCCCCCCC
Q psy10640        193 ISADLRLNEPR  203 (242)
Q Consensus       193 is~~~~~~~pr  203 (242)
                      +++.....+|.
T Consensus       153 ~tvr~~~f~~~  163 (192)
T d3clsd1         153 LTIRPSVFKPL  163 (192)
T ss_dssp             EEECTTSSCCC
T ss_pred             EEECCCCcCCC
Confidence            99987766654

>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00011  Score=59.64  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=87.7

Q ss_pred             HHHHHHHHHc-CCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEE
Q psy10640         38 RETIRTALAM-GADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEI  116 (242)
Q Consensus        38 ~e~Lr~aLa~-GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv  116 (242)
                      .....++... |+++.+.+  .++.++...+...+.++.+++++.+|+++|-+=-                         
T Consensus        42 ~~~a~~~~~~~g~~~V~~~--~~~~~~~~~~~~~a~~l~~~~~~~~p~~Vl~~~t-------------------------   94 (188)
T d1efva1          42 DKVAQDLCKVAGIAKVLVA--QHDVYKGLLPEELTPLILATQKQFNYTHICAGAS-------------------------   94 (188)
T ss_dssp             HHHHHHHHHSTTCCEEEEE--ECGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESS-------------------------
T ss_pred             hHHHHHHHhcCCCceEEee--cCchhhccchhHHHHHHHHHhcccCCCEEEEcCc-------------------------
Confidence            4444555554 99999998  4566777889899999999999888888775442                         


Q ss_pred             EEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCe--EEEEEEc-CCeEE
Q psy10640        117 VTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGG--LETIKVK-LPAVI  193 (242)
Q Consensus       117 ~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g--~~~~~~~-lPavi  193 (242)
                                            ..+  .+++++||..||.++++.+.+++.++   +++|-+-+|  ..++++. -|+|+
T Consensus        95 ----------------------~~g--rdlaprlAa~l~~~~vsdv~~l~~~~---~~~r~~y~Gk~~~~v~~~~~~~i~  147 (188)
T d1efva1          95 ----------------------AFG--KNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVF  147 (188)
T ss_dssp             ----------------------HHH--HHHHHHHHHHHTCCCEEEECEEEETT---EEEEEETTTTEEEEEEECCSSEEE
T ss_pred             ----------------------HHH--HHHHHHHHHHhCcCcccceEEEccCC---eEEEEEeCCcceEEEEeCCCCEEE
Confidence                                  223  68899999999999999999998755   578888888  5788886 47999


Q ss_pred             EEeCCCCCCC
Q psy10640        194 SADLRLNEPR  203 (242)
Q Consensus       194 s~~~~~~~pr  203 (242)
                      ++.....+|-
T Consensus       148 tvr~~sf~~~  157 (188)
T d1efva1         148 SVRGTSFDAA  157 (188)
T ss_dssp             EECGGGSCCC
T ss_pred             EECCCccccC
Confidence            9998876653

>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.78  E-value=0.01  Score=47.52  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             HHHHH-cCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEee
Q psy10640         42 RTALA-MGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVE  120 (242)
Q Consensus        42 r~aLa-~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~  120 (242)
                      .++.. .|+++.+++  ++..+...++...+.++..  ...+||+++-+=                              
T Consensus        45 ~~~~~~~g~~~V~~~--~~~~~~~~~~~~~a~~~~~--~~~~~~~vl~~~------------------------------   90 (183)
T d1efpa1          45 EEAAKIAGVAKVLVA--EDALYGHRLAEPTAALIVG--LAGDYSHIAAPA------------------------------   90 (183)
T ss_dssp             HHHHTSTTEEEEEEE--ECGGGTTCCHHHHHHHHHH--HHTTCSEEEEES------------------------------
T ss_pred             HHHhhcCCccEEEEe--CCchhhccchhhhhhHHHh--hccccceEEEeC------------------------------
Confidence            33444 488888888  4556667778776655444  334666654332                              


Q ss_pred             CCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCe--EEEEEEc-CCeEEEEeC
Q psy10640        121 DPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGG--LETIKVK-LPAVISADL  197 (242)
Q Consensus       121 ~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g--~~~~~~~-lPavis~~~  197 (242)
                                       +..+  .+++++||..|+.++++.+..+.   +..+++|.+-+|  .+++++. -|.++++..
T Consensus        91 -----------------t~~G--rdlaprlAa~l~~~~isdvv~i~---~~~~~~Rp~y~Gk~~~~v~~~~~~~iitvr~  148 (183)
T d1efpa1          91 -----------------TTDA--KNVMPRVAALLDVMVLSDVSAIL---DADTFERPIYAGNAIQVVKSKDAKKVFTIRT  148 (183)
T ss_dssp             -----------------SHHH--HHHHHHHHHHTTCCEEEEESEEC---SSSEEEEEEGGGTEEEEEEECSSSEEEEECG
T ss_pred             -----------------CccH--HHHHHHHHHHHhhchhhHhhhcC---CCCeEEEEEEcCceEEEEecCCCCEEEEECC
Confidence                             2233  68999999999999999999873   334678999888  5788886 677899987


Q ss_pred             CCCCCC
Q psy10640        198 RLNEPR  203 (242)
Q Consensus       198 ~~~~pr  203 (242)
                      ...+|.
T Consensus       149 ~af~~~  154 (183)
T d1efpa1         149 ASFDAA  154 (183)
T ss_dssp             GGSCCC
T ss_pred             CccCCC
Confidence            766654