Psyllid ID: psy10681

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MARNYKYARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIVH
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHcc
Coil and Loop (DISEMBL)
MARNYKYARTRTVRNEDKIRLLKAAAGAhqrgyqdamcgkgidrHLFCLYVVSKylevdspflkivh
Flexible Loop (DISEMBL)
marnykyartrtvrnedkIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKylevdspflkivh
Low Complexity Region (SEG)
MARNYKYARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIVH
Disordered region (IsUnstruct)
****************DKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKI**
Disordered Region (DISOPRED)
MARNYKYARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV*
Disordered Region (DISEMBL)
MARNYKYARTRTVRNEDKIRLLKAA********QDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIVH
Disordered Region (DISPRO)
***********TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIVH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARNYKYARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q68Y62	776	Carnitine O-palmitoyltran	yes	N/A	0.985	0.085	0.494	2e-14
P32198	773	Carnitine O-palmitoyltran	yes	N/A	0.985	0.085	0.482	6e-14
P97742	773	Carnitine O-palmitoyltran	yes	N/A	0.985	0.085	0.482	1e-13
P50416	773	Carnitine O-palmitoyltran	yes	N/A	0.985	0.085	0.470	1e-13
Q58DK1	771	Carnitine O-palmitoyltran	no	N/A	0.940	0.081	0.5	1e-13
Q8HY46	772	Carnitine O-palmitoyltran	no	N/A	0.940	0.081	0.463	3e-11
Q924X2	772	Carnitine O-palmitoyltran	no	N/A	0.940	0.081	0.439	3e-11
Q63704	772	Carnitine O-palmitoyltran	no	N/A	0.940	0.081	0.439	6e-11
Q92523	772	Carnitine O-palmitoyltran	no	N/A	0.940	0.081	0.451	7e-11
Q8TCG5	803	Carnitine O-palmitoyltran	no	N/A	1.0	0.083	0.395	4e-09

>sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase 1, liver isoform OS=Equus caballus GN=CPT1A PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 49/85 (57%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   + K+RL K A+  HQ  Y+ AM G G
Sbjct: 593 MTRLFREGRTETVRSCSSESCNFVLAMVDPTQTVKQKLRLFKIASEKHQHLYRLAMTGSG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYL VDSPFLK V
Sbjct: 653 IDRHLFCLYVVSKYLAVDSPFLKEV 677

Equus caballus (taxid: 9796)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 1

>sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase 1, liver isoform OS=Rattus norvegicus GN=Cpt1a PE=1 SV=2

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 48/85 (56%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   E +++L K A   HQ  Y+ AM G G
Sbjct: 593 MTRLFREGRTETVRSCTMESCNFVQAMMDPKSTAEQRLKLFKIACEKHQHLYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYL VDSPFLK V
Sbjct: 653 IDRHLFCLYVVSKYLAVDSPFLKEV 677

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase 1, liver isoform OS=Mus musculus GN=Cpt1a PE=1 SV=4

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 47/85 (55%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   E + +L K A   HQ  Y+ AM G G
Sbjct: 593 MTRLFREGRTETVRSCTTESCNFVLAMMDPTTTAEQRFKLFKIACEKHQHLYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYL VDSPFLK V
Sbjct: 653 IDRHLFCLYVVSKYLAVDSPFLKEV 677

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase 1, liver isoform OS=Homo sapiens GN=CPT1A PE=1 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 49/85 (57%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   E +++L K A+  HQ  Y+ AM G G
Sbjct: 593 MTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQRLKLFKLASEKHQHMYRLAMTGSG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYL V+SPFLK V
Sbjct: 653 IDRHLFCLYVVSKYLAVESPFLKEV 677

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q58DK1|CPT1B_BOVIN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Bos taurus GN=CPT1B PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 46/82 (56%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                   NED  RL + AA  HQ  Y+ AM G G
Sbjct: 592 MTRMFREGRTETVRSCTRESTAFVQAMVQGRHLNEDLQRLFRKAAEKHQNMYRLAMTGAG 651

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
           IDRHLFCLYVVSKYL V+SPFL
Sbjct: 652 IDRHLFCLYVVSKYLGVESPFL 673

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase 1, muscle isoform OS=Sus scrofa GN=CPT1B PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 43/82 (52%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                    D   L + AA  HQ  Y+ AM G G
Sbjct: 593 MTRMFREGRTETVRSCTRESTAFVQAMVEGRRVKADLQDLFRKAAQKHQNMYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
           IDRHLFCLYVVSKYL V SPFL
Sbjct: 653 IDRHLFCLYVVSKYLGVSSPFL 674

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase 1, muscle isoform OS=Mus musculus GN=Cpt1b PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 44/82 (53%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   +D   L + A+  HQ  Y+ AM G G
Sbjct: 593 MTRMFREGRTETVRSCTNESAAFVQAMMKGSHKKQDLQDLFRKASEKHQNMYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
           IDRHLFCLY+VSKYL V SPFL
Sbjct: 653 IDRHLFCLYIVSKYLGVSSPFL 674

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase 1, muscle isoform OS=Rattus norvegicus GN=Cpt1b PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 44/82 (53%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                   +D   L + A+  HQ  Y+ AM G G
Sbjct: 593 MTRMFREGRTETVRSCTSESTAFVRAMMTGSHKKQDLQDLFRKASEKHQNMYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
           IDRHLFCLY+VSKYL V SPFL
Sbjct: 653 IDRHLFCLYIVSKYLGVRSPFL 674

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Homo sapiens GN=CPT1B PE=2 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR+                    D   L + AA  HQ  Y+ AM G G
Sbjct: 593 MTRMFREGRTETVRSCTSESTAFVQAMMEGSHTKADLRDLFQKAAKKHQNMYRLAMTGAG 652

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
           IDRHLFCLY+VSKYL V SPFL
Sbjct: 653 IDRHLFCLYLVSKYLGVSSPFL 674

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain isoform OS=Homo sapiens GN=CPT1C PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 19/86 (22%)

Query: 1   MARNYKYARTRTVRN------------EDK-------IRLLKAAAGAHQRGYQDAMCGKG 41
           M R +   RT TVR+            EDK       + L + A   HQ   + AM G+G
Sbjct: 590 MTRLFLEGRTETVRSCTREACNFVRAMEDKEKTDPQCLALFRVAVDKHQALLKAAMSGQG 649

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIVH 67
           +DRHLF LY+VS++L + SPFL  VH
Sbjct: 650 VDRHLFALYIVSRFLHLQSPFLTQVH 675

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
321462616	765	hypothetical protein DAPPUDRAFT_57941 [D	0.985	0.086	0.6	5e-20
307196625	284	Carnitine O-palmitoyltransferase I, live	0.970	0.228	0.707	1e-18
383863456	798	PREDICTED: carnitine O-palmitoyltransfer	0.985	0.082	0.576	3e-18
380026946	798	PREDICTED: carnitine O-palmitoyltransfer	0.985	0.082	0.588	5e-18
195026406	802	GH20631 [Drosophila grimshawi] gi|193902	0.985	0.082	0.552	6e-18
350399244	798	PREDICTED: carnitine O-palmitoyltransfer	0.985	0.082	0.588	6e-18
350399241	776	PREDICTED: carnitine O-palmitoyltransfer	0.985	0.085	0.588	6e-18
194884249	802	GG22743 [Drosophila erecta] gi|190659395	0.985	0.082	0.529	7e-18
195582202	802	GD25979 [Drosophila simulans] gi|1941929	0.985	0.082	0.529	9e-18
195483722	802	GE13102 [Drosophila yakuba] gi|194176507	0.985	0.082	0.529	9e-18

>gi|321462616|gb|EFX73638.1| hypothetical protein DAPPUDRAFT_57941 [Daphnia pulex]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 56/85 (65%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                    E++IRLL+ A G HQRGYQDAMCGKG
Sbjct: 591 MTRLFREGRTETVRPCTIESSQWVKAMMDESVSKEERIRLLRLACGQHQRGYQDAMCGKG 650

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFLK V
Sbjct: 651 IDRHLFCLYVVSKYLEVDSPFLKEV 675

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196625|gb|EFN78122.1| Carnitine O-palmitoyltransferase I, liver isoform [Harpegnathos saltator]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/65 (70%), Positives = 51/65 (78%)

Query: 2   ARNYKYARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61
           A+  K    +TV  E+KIRLL AA   HQ+ YQDAMCGKGIDRHLFCLYV+SKYLEVDSP
Sbjct: 119 AKWVKSMEDKTVTTEEKIRLLMAAVMQHQKAYQDAMCGKGIDRHLFCLYVISKYLEVDSP 178

Query: 62  FLKIV 66
           FLK V
Sbjct: 179 FLKEV 183

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863456|ref|XP_003707197.1| PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like [Megachile rotundata]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/85 (57%), Positives = 54/85 (63%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                    + K +LL AAA  HQ+GYQDAMCGKG
Sbjct: 612 MTRLFREGRTETVRPCTIESTAWVKAMEDKDATTDHKYKLLMAAAKQHQKGYQDAMCGKG 671

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFLK V
Sbjct: 672 IDRHLFCLYVVSKYLEVDSPFLKEV 696

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026946|ref|XP_003697199.1| PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like [Apis florea]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 55/85 (64%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR--------------NED-----KIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR              N+D     K +LL  AA  HQ+GYQDAMCGKG
Sbjct: 612 MTRLFREGRTETVRPCTIESTNWVKAMENKDATIEFKYKLLMTAAKQHQKGYQDAMCGKG 671

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFLK V
Sbjct: 672 IDRHLFCLYVVSKYLEVDSPFLKEV 696

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026406|ref|XP_001986249.1| GH20631 [Drosophila grimshawi] gi|193902249|gb|EDW01116.1| GH20631 [Drosophila grimshawi]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 54/85 (63%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                   N+D+++LLK A   HQ GYQDAMCG+G
Sbjct: 610 MTRLFREGRTETVRPCTIESAAWVKAMMDPSTTNDDRVQLLKDACDRHQLGYQDAMCGRG 669

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFL  V
Sbjct: 670 IDRHLFCLYVVSKYLEVDSPFLNEV 694

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399244|ref|XP_003485466.1| PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like isoform 2 [Bombus impatiens]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 53/85 (62%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                    E K  LL AAA  HQ+GYQDAMCGKG
Sbjct: 612 MTRLFREGRTETVRPCTIESTNWVKAMESKNTTVETKYDLLMAAAKQHQKGYQDAMCGKG 671

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFLK V
Sbjct: 672 IDRHLFCLYVVSKYLEVDSPFLKEV 696

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399241|ref|XP_003485465.1| PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like isoform 1 [Bombus impatiens]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 53/85 (62%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVRN-------------------EDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                    E K  LL AAA  HQ+GYQDAMCGKG
Sbjct: 590 MTRLFREGRTETVRPCTIESTNWVKAMESKNTTVETKYDLLMAAAKQHQKGYQDAMCGKG 649

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFLK V
Sbjct: 650 IDRHLFCLYVVSKYLEVDSPFLKEV 674

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194884249|ref|XP_001976208.1| GG22743 [Drosophila erecta] gi|190659395|gb|EDV56608.1| GG22743 [Drosophila erecta]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                   N++++++L+AA   HQ GYQDAMCG+G
Sbjct: 610 MTRLFREGRTETVRPCTIESSAWVKAMQNPDTTNDERVKMLRAACDRHQLGYQDAMCGRG 669

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFL  V
Sbjct: 670 IDRHLFCLYVVSKYLEVDSPFLNEV 694

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195582202|ref|XP_002080917.1| GD25979 [Drosophila simulans] gi|194192926|gb|EDX06502.1| GD25979 [Drosophila simulans]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                   N++++++L+AA   HQ GYQDAMCG+G
Sbjct: 610 MTRLFREGRTETVRPCTIESSAWVKAMQNPNTTNDERVKMLQAACDRHQLGYQDAMCGRG 669

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFL  V
Sbjct: 670 IDRHLFCLYVVSKYLEVDSPFLNEV 694

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195483722|ref|XP_002090406.1| GE13102 [Drosophila yakuba] gi|194176507|gb|EDW90118.1| GE13102 [Drosophila yakuba]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 19/85 (22%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R ++  RT TVR                   N++++++L+AA   HQ GYQDAMCG+G
Sbjct: 610 MTRLFREGRTETVRPCTIESSAWVKAMQNPNTTNDERVKMLQAACDRHQLGYQDAMCGRG 669

Query: 42  IDRHLFCLYVVSKYLEVDSPFLKIV 66
           IDRHLFCLYVVSKYLEVDSPFL  V
Sbjct: 670 IDRHLFCLYVVSKYLEVDSPFLNEV 694

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0261862	782	whd "withered" [Drosophila mel	0.776	0.066	0.711	3e-17
UNIPROTKB|K7GPM3	287	K7GPM3 "Uncharacterized protei	0.761	0.177	0.686	1.7e-15
UNIPROTKB|F1RY68	758	F1RY68 "Uncharacterized protei	0.761	0.067	0.686	1.8e-13
ZFIN|ZDB-GENE-030131-3250	774	si:ch211-236l14.3 "si:ch211-23	0.761	0.065	0.686	1.9e-13
UNIPROTKB|E1BVX6	766	CPT1A "Uncharacterized protein	0.776	0.067	0.673	3.1e-13
UNIPROTKB|Q6B842	770	CPT1A "Carnitine palmitoyltran	0.776	0.067	0.673	3.1e-13
ZFIN|ZDB-GENE-041010-9	770	cpt1b "carnitine palmitoyltran	0.820	0.071	0.6	1.1e-12
MGI|MGI:1098296	773	Cpt1a "carnitine palmitoyltran	0.820	0.071	0.636	1.1e-12
RGD|2396	773	Cpt1a "carnitine palmitoyltran	0.761	0.065	0.666	1.1e-12
UNIPROTKB|P50416	773	CPT1A "Carnitine O-palmitoyltr	0.761	0.065	0.647	1.4e-12

FB|FBgn0261862 whd "withered" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 37/52 (71%), Positives = 46/52 (88%)

Query:    15 NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             N++++++++AA   HQ GYQDAMCG+GIDRHLFCLYVVSKYLEVDSPFL  V
Sbjct:   623 NDERVKMMQAACDRHQLGYQDAMCGRGIDRHLFCLYVVSKYLEVDSPFLNEV 674

GO:0004095 "carnitine O-palmitoyltransferase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0010038 "response to metal ion" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

UNIPROTKB|K7GPM3 K7GPM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query:    16 EDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             E K++L K AA  HQ  Y+ AM G G+DRHLFCLYVVSKYL VDSPFLK V
Sbjct:   141 EQKLKLFKIAAEKHQHLYRLAMTGSGVDRHLFCLYVVSKYLAVDSPFLKEV 191

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|F1RY68 F1RY68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query:    16 EDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             E K++L K AA  HQ  Y+ AM G G+DRHLFCLYVVSKYL VDSPFLK V
Sbjct:   612 EQKLKLFKIAAEKHQHLYRLAMTGSGVDRHLFCLYVVSKYLAVDSPFLKEV 662

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

ZFIN|ZDB-GENE-030131-3250 si:ch211-236l14.3 "si:ch211-236l14.3" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query:    16 EDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             E++++LLKAA   HQ  Y+ AM GKGIDRHLFCLY+VSKYL  DSPFLK V
Sbjct:   627 EERLKLLKAATEKHQNLYKLAMTGKGIDRHLFCLYLVSKYLGEDSPFLKEV 677

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BVX6 CPT1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 174 (66.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 35/52 (67%), Positives = 40/52 (76%)

Query:    15 NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             NE+K++  + AA  HQ  Y+ AM G GIDRHLFCLYVVSKYL VDSPFLK V
Sbjct:   626 NENKMKSFRLAATKHQHLYRLAMTGAGIDRHLFCLYVVSKYLSVDSPFLKEV 677

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|Q6B842 CPT1A "Carnitine palmitoyltransferase I" [Gallus gallus (taxid:9031)]

 Score = 174 (66.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 35/52 (67%), Positives = 40/52 (76%)

Query:    15 NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             NE+K++  + AA  HQ  Y+ AM G GIDRHLFCLYVVSKYL VDSPFLK V
Sbjct:   626 NENKMKSFRLAATKHQHLYRLAMTGAGIDRHLFCLYVVSKYLSVDSPFLKEV 677

GO:0004095 "carnitine O-palmitoyltransferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-041010-9 cpt1b "carnitine palmitoyltransferase 1B (muscle)" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query:    12 TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             T  NE ++ L K AA  HQ  Y+ AM G GIDRHLFCLY+VSK + +DSPFLK V
Sbjct:   621 TTTNEQRLALFKQAAEKHQNMYRLAMTGAGIDRHLFCLYIVSKVMGIDSPFLKQV 675

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009617 "response to bacterium" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:1098296 Cpt1a "carnitine palmitoyltransferase 1a, liver" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 35/55 (63%), Positives = 38/55 (69%)

Query:    12 TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             T   E + +L K A   HQ  Y+ AM G GIDRHLFCLYVVSKYL VDSPFLK V
Sbjct:   623 TTTAEQRFKLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEV 677

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0004095 "carnitine O-palmitoyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=ISO

GO:0042755 "eating behavior" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046320 "regulation of fatty acid oxidation" evidence=ISO

GO:0050796 "regulation of insulin secretion" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

RGD|2396 Cpt1a "carnitine palmitoyltransferase 1a, liver" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 34/51 (66%), Positives = 38/51 (74%)

Query:    16 EDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             E +++L K A   HQ  Y+ AM G GIDRHLFCLYVVSKYL VDSPFLK V
Sbjct:   627 EQRLKLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEV 677

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;IMP;IDA;TAS

GO:0004095 "carnitine O-palmitoyltransferase activity" evidence=ISO;IMP;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=ISO;IDA;TAS

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016021 "integral to membrane" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=TAS

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IMP

GO:0042493 "response to drug" evidence=IEP

GO:0042755 "eating behavior" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0046320 "regulation of fatty acid oxidation" evidence=IMP

GO:0050796 "regulation of insulin secretion" evidence=IMP

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|P50416 CPT1A "Carnitine O-palmitoyltransferase 1, liver isoform" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 33/51 (64%), Positives = 39/51 (76%)

Query:    16 EDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFLKIV 66
             E +++L K A+  HQ  Y+ AM G GIDRHLFCLYVVSKYL V+SPFLK V
Sbjct:   627 EQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEV 677

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042755 "eating behavior" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004095 "carnitine O-palmitoyltransferase activity" evidence=IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0009437 "carnitine metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
pfam00755	590	pfam00755, Carn_acyltransf, Choline/Carnitine o-ac	1e-14

>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 19/80 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
             R + + RT T+R                    E+K +LLK A   H +  ++AM GKG
Sbjct: 430 STRMFLHGRTETIRSVTTESLEFVQAMLSPSASKEEKRQLLKKACKKHVKYTKEAMTGKG 489

Query: 42  IDRHLFCLYVVSKYLEVDSP 61
           IDRHLF L +++K L V+SP
Sbjct: 490 IDRHLFGLKLLAKELGVESP 509

Length = 590

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF00755	591	Carn_acyltransf: Choline/Carnitine o-acyltransfera	99.89
KOG3718|consensus	609		99.88
KOG3717|consensus	612		99.87
KOG3716|consensus	764		99.83
KOG3719|consensus	638		99.73

>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family

Probab=99.89  E-value=4.3e-24  Score=157.26  Aligned_cols=65  Identities=40%  Similarity=0.629  Sum_probs=57.0

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|++||||+||                   .++|+++|++|++.|++++++|++|+||||||+||+++|++.|+++|
T Consensus       431 stR~F~~GRTE~iRs~T~es~~fv~a~~~~~~~~~e~~~ll~~A~~~H~~~~~~a~~G~G~dRHL~~L~~~a~~~~~~~P  510 (591)
T PF00755_consen  431 STRHFRHGRTETIRSCTPESLAFVKAMDDPSASKEEKRELLRAAVKAHKQYIKEAMRGKGFDRHLFGLRCLAKENGIELP  510 (591)
T ss_dssp             E-TTSTT--EEEEES--HHHHHHHHHHCTTTS-HHHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHTTSS--
T ss_pred             hHHHhHhhCCCeeccCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhccchh
Confidence            69999999999999                   67899999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||++
T Consensus       511 ~lf~d  515 (591)
T PF00755_consen  511 ELFSD  515 (591)
T ss_dssp             HHHHS
T ss_pred             hhccC
Confidence             6664

These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....

>KOG3718|consensus

Probab=99.88  E-value=2.5e-23  Score=151.87  Aligned_cols=66  Identities=41%  Similarity=0.587  Sum_probs=62.9

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|+||||||+|                   .++...+|..|+++|++.|++|+.|+||||||+||++++.+.++++|
T Consensus       440 stR~fyhGRTETvRscTs~~vrf~~a~~n~qvn~e~lk~lf~~A~n~Hn~lM~d~~~GkG~DRHl~GL~laa~e~~~~iP  519 (609)
T KOG3718|consen  440 STRQFYHGRTETVRSCTSAVVRFLRASSNKQVNDESLKRLFRRAVNEHNHLMNDARKGKGIDRHLFGLWLAAYESKMDIP  519 (609)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCch
Confidence            69999999999999                   46888999999999999999999999999999999999999999999


Q ss_pred             -Ccccc
Q psy10681         62 -FLKIV   66 (67)
Q Consensus        62 -f~~~~   66 (67)
                       ||+++
T Consensus       520 efl~dp  525 (609)
T KOG3718|consen  520 EFLDDP  525 (609)
T ss_pred             hhhcCc
Confidence             99875

>KOG3717|consensus

Probab=99.87  E-value=1.5e-22  Score=149.05  Aligned_cols=65  Identities=32%  Similarity=0.478  Sum_probs=62.0

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |+|+|..|||||||                   .+||.++|++|+.+|+.+++.|++|.||||||+||+++|.|.+.++|
T Consensus       440 slR~F~~GRtdtIRS~s~esL~fv~am~~~~v~~~ek~~llr~Av~~h~~yt~~ai~G~gvDrHLlgLk~~a~e~~~~iP  519 (612)
T KOG3717|consen  440 SLRRFHEGRTDTIRSASTESLEFVKAMDDSSVPKSEKLELLRKAVQAHTKYTKRAIRGNGVDRHLLGLKLMAIENCKPIP  519 (612)
T ss_pred             hhhhhcCCcccccccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCcc
Confidence            68999999999999                   67999999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||.+
T Consensus       520 elF~d  524 (612)
T KOG3717|consen  520 ELFKD  524 (612)
T ss_pred             hhhcC
Confidence             6654

>KOG3716|consensus

Probab=99.83  E-value=9.1e-22  Score=147.26  Aligned_cols=67  Identities=55%  Similarity=0.921  Sum_probs=63.7

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||.|+.|||||+|                   .+++.++|++||++|+.+.++||.|+|||||||+|+++++-.++..|
T Consensus       584 mtRlF~egRTETvRsct~~Sc~FVraMl~~~~T~~~rl~llk~Acd~Hq~~yk~aM~G~GvDRHLF~LyVvskyL~~~SP  663 (764)
T KOG3716|consen  584 MTRLFREGRTETVRSCTIESCDFVRAMLDKNKTKQERLQLLKKACDKHQLNYKEAMTGQGVDRHLFALYVVSKYLGVQSP  663 (764)
T ss_pred             HHHHHHhcCCceeeecchhhhHHHHHHhCcccChHHHHHHHHHHHHHHHHHHHHHhhcCCccceeeeeeeehhhcccCCh
Confidence            68999999999999                   67999999999999999999999999999999999999999999999


Q ss_pred             CccccC
Q psy10681         62 FLKIVH   67 (67)
Q Consensus        62 f~~~~~   67 (67)
                      |++.++
T Consensus       664 FL~~v~  669 (764)
T KOG3716|consen  664 FLDEVL  669 (764)
T ss_pred             HHHhhc
Confidence            998653

>KOG3719|consensus

Probab=99.73  E-value=5.7e-18  Score=124.77  Aligned_cols=65  Identities=28%  Similarity=0.455  Sum_probs=55.6

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAG-AHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDS   60 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~-~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~   60 (67)
                      ||+-|++||||+||                   +..+.+.|..+|. .|.+++++|++|+|+||||+||+++|+..+++.
T Consensus       470 sT~aFk~gRTe~ir~~t~atk~~~~a~l~~s~~~a~kl~~li~~Cs~~H~qltKeasmGqG~DRHl~ALk~la~~e~~~~  549 (638)
T KOG3719|consen  470 STAAFKNGRTETIRSATQATKEFCEAFLSSSIDSAGKLQQLIDTCSKTHGQLTKEASMGQGYDRHLFALKHLAQKESIPL  549 (638)
T ss_pred             hHHHHhcCchhhhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            68999999999999                   3345555555555 999999999999999999999999999989999


Q ss_pred             C-Cccc
Q psy10681         61 P-FLKI   65 (67)
Q Consensus        61 p-f~~~   65 (67)
                      | +|.+
T Consensus       550 pdlf~d  555 (638)
T KOG3719|consen  550 PDLFED  555 (638)
T ss_pred             chhhcC
Confidence            9 5553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
2deb_A	653	CPT II, carnitine O-palmitoyltransferase II, mitoc	2e-10
1t1u_A	639	Choline O-acetyltransferase; choline acetyltransfe	2e-09
1nm8_A	616	Carnitine O-acetyltransferase; two equally sized d	3e-09
1xl7_A	612	COT, peroxisomal carnitine O-octanoyltransferase;	6e-09

>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A* Length = 653

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 1   MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCG 39
               +K+ RT T+R                       +   ++   +  H +  ++A  G
Sbjct: 485 STAAFKHGRTETIRPASIFTKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAMG 544

Query: 40  KGIDRHLFCLYVVSKYLEVDSPFL 63
           +G DRHL+ L  ++    ++ P L
Sbjct: 545 QGFDRHLYALRYLATARGLNLPEL 568

>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A* Length = 639

 Score = 50.6 bits (120), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 12  TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFL 63
            +   +K++LL+ A  A       A+ G  ID HL  L  +++ L  + P +
Sbjct: 481 AMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEM 532

>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A* Length = 616

 Score = 49.8 bits (118), Expect = 3e-09
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
             R +   RT T+R                      K+ LL+ A  AH+     A+ G+ 
Sbjct: 435 SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEA 494

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L + +    V +P +
Sbjct: 495 FDRHLLGLKLQAIEDLVSTPDI 516

>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A* Length = 612

 Score = 49.1 bits (116), Expect = 6e-09
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R + + RT TVR                     ++ + +  A   H +  +D   GKG
Sbjct: 443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKG 502

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L +++K   +  P L
Sbjct: 503 FDRHLLGLLLIAKEEGLPVPEL 524

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1xl7_A	612	COT, peroxisomal carnitine O-octanoyltransferase;	99.91
1nm8_A	616	Carnitine O-acetyltransferase; two equally sized d	99.91
2deb_A	653	CPT II, carnitine O-palmitoyltransferase II, mitoc	99.9
1t1u_A	639	Choline O-acetyltransferase; choline acetyltransfe	99.9

>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*

Probab=99.91  E-value=4.6e-25  Score=162.51  Aligned_cols=65  Identities=31%  Similarity=0.453  Sum_probs=61.3

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|++|||||||                   .++|+++|++|+++|++++++|+.|+|||||||||+++|++.|+++|
T Consensus       443 stR~F~~GRTEtiRs~T~es~~fv~am~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P  522 (612)
T 1xl7_A          443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVP  522 (612)
T ss_dssp             ECTTSTTCCEEEEECCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred             hcccCCCCCcCccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCc
Confidence            69999999999999                   48999999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||.+
T Consensus       523 ~lF~d  527 (612)
T 1xl7_A          523 ELFED  527 (612)
T ss_dssp             GGGTS
T ss_pred             hhhcC
Confidence             5553

>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*

Probab=99.91  E-value=6.1e-25  Score=162.08  Aligned_cols=65  Identities=31%  Similarity=0.419  Sum_probs=61.3

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|++|||||||                   .+||+++|++|+++|++++++|++|+|||||||||+++|++.|+++|
T Consensus       435 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P  514 (616)
T 1nm8_A          435 SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTP  514 (616)
T ss_dssp             ECTTSTTCCEEEEECCCHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred             ccccCCCCCccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCc
Confidence            69999999999999                   57999999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||.+
T Consensus       515 ~lF~d  519 (616)
T 1nm8_A          515 DIFMD  519 (616)
T ss_dssp             HHHHS
T ss_pred             ccccC
Confidence             5543

>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*

Probab=99.90  E-value=1.5e-24  Score=160.88  Aligned_cols=65  Identities=23%  Similarity=0.376  Sum_probs=61.3

Q ss_pred             CccccccCcchhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy10681          1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVD   59 (67)
Q Consensus         1 s~r~F~~GRtE~iR---------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~   59 (67)
                      |||.|++|||||||                     .+||+++|++|+++|++++++|++|+|||||||||+++|++.|++
T Consensus       485 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~~~ek~~ll~~A~~~H~~~~k~a~~G~G~DRHL~gL~~~a~~~g~~  564 (653)
T 2deb_A          485 STAAFKHGRTETIRPASIFTKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAMGQGFDRHLYALRYLATARGLN  564 (653)
T ss_dssp             ECTTSBTCCEEEECCCCHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCC
T ss_pred             hccccCCCCccccccCCHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCC
Confidence            69999999999999                     368999999999999999999999999999999999999999999


Q ss_pred             CC-Cccc
Q psy10681         60 SP-FLKI   65 (67)
Q Consensus        60 ~p-f~~~   65 (67)
                      +| ||.+
T Consensus       565 ~P~lF~D  571 (653)
T 2deb_A          565 LPELYLD  571 (653)
T ss_dssp             CCGGGGS
T ss_pred             CchhhcC
Confidence            99 6664

>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*

Probab=99.90  E-value=1.2e-24  Score=161.05  Aligned_cols=65  Identities=26%  Similarity=0.399  Sum_probs=61.2

Q ss_pred             CccccccCcchhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy10681          1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVD   59 (67)
Q Consensus         1 s~r~F~~GRtE~iR---------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~   59 (67)
                      |||+|++|||||||                     .++|+++|++|+++|++++++|+.|+|||||||||+++|++.|++
T Consensus       449 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~  528 (639)
T 1t1u_A          449 SIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKE  528 (639)
T ss_dssp             ECTTSTTCCEEEECCCCHHHHHHHHTSSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCS
T ss_pred             hhccccCCCccccccCCHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Confidence            69999999999999                     378999999999999999999999999999999999999999999


Q ss_pred             CC-Cccc
Q psy10681         60 SP-FLKI   65 (67)
Q Consensus        60 ~p-f~~~   65 (67)
                      +| ||.+
T Consensus       529 ~P~lF~d  535 (639)
T 1t1u_A          529 PPEMFMD  535 (639)
T ss_dssp             CCHHHHS
T ss_pred             CcccccC
Confidence            99 6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1nm8a2	214	c.43.1.3 (A:386-599) Carnitine acetyltransferase {	2e-12
d1t1ua2	215	c.43.1.3 (A:402-616) Choline O-acetyltransferase {	1e-11
d1xl7a2	218	c.43.1.3 (A:393-610) Peroxisomal carnitine O-octan	2e-11

>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Carnitine acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 2e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
             R +   RT T+R                      K+ LL+ A  AH+     A+ G+ 
Sbjct: 50  SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEA 109

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L + +    V +P +
Sbjct: 110 FDRHLLGLKLQAIEDLVSTPDI 131

>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 215

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Choline O-acetyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (131), Expect = 1e-11
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 12  TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFL 63
            +   +K++LL+ A  A       A+ G  ID HL  L  +++ L  + P +
Sbjct: 81  AMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEM 132

>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} Length = 218

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (130), Expect = 2e-11
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R + + RT TVR                     ++ + +  A   H +  +D   GKG
Sbjct: 51  MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKG 110

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L +++K   +  P L
Sbjct: 111 FDRHLLGLLLIAKEEGLPVPEL 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1nm8a2	214	Carnitine acetyltransferase {Human (Homo sapiens)	99.93
d1xl7a2	218	Peroxisomal carnitine O-octanoyltransferase, COT {	99.93
d1t1ua2	215	Choline O-acetyltransferase {Rat (Rattus norvegicu	99.93

>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Carnitine acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-27  Score=152.72  Aligned_cols=65  Identities=31%  Similarity=0.419  Sum_probs=61.4

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|++||||+||                   .+||+++|++|+++|++++++|++|+|+||||+||+.+|.+.|+++|
T Consensus        50 str~F~~GRTE~irs~t~es~~fv~a~~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~dRHL~aL~~~a~~~g~~~P  129 (214)
T d1nm8a2          50 SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTP  129 (214)
T ss_dssp             ECTTSTTCCEEEEECCCHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred             HHhccccCCCCCcccCCHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCC
Confidence            69999999999999                   67999999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||.+
T Consensus       130 ~lF~d  134 (214)
T d1nm8a2         130 DIFMD  134 (214)
T ss_dssp             HHHHS
T ss_pred             chhcC
Confidence             6553

>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-26  Score=152.01  Aligned_cols=65  Identities=31%  Similarity=0.453  Sum_probs=61.7

Q ss_pred             CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681          1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP   61 (67)
Q Consensus         1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p   61 (67)
                      |||+|++||||+||                   .+||+++|++|+++|++++++|++|+|+||||+||+.++++.|+|+|
T Consensus        51 str~F~~GRTE~irs~t~es~~f~~a~~~~~~s~~e~~~ll~~A~~~H~~~~~~a~~G~G~dRHL~~L~~~a~~~g~~~P  130 (218)
T d1xl7a2          51 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVP  130 (218)
T ss_dssp             ECTTSTTCCEEEEECCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred             hhhhhhCCCccccccCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCC
Confidence            69999999999999                   67999999999999999999999999999999999999999999999


Q ss_pred             -Cccc
Q psy10681         62 -FLKI   65 (67)
Q Consensus        62 -f~~~   65 (67)
                       ||.+
T Consensus       131 ~lF~d  135 (218)
T d1xl7a2         131 ELFED  135 (218)
T ss_dssp             GGGTS
T ss_pred             ccccC
Confidence             6654

>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Choline O-acetyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.3e-26  Score=152.12  Aligned_cols=65  Identities=26%  Similarity=0.399  Sum_probs=61.2

Q ss_pred             CccccccCcchhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy10681          1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVD   59 (67)
Q Consensus         1 s~r~F~~GRtE~iR---------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~   59 (67)
                      |||+|++||||+||                     .+||+++|++|++.|++++++|++|+|+||||+||+.++++.|.+
T Consensus        49 stR~F~~GRTE~irs~t~es~~f~~a~~~~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~dRHL~aL~~~a~~~g~~  128 (215)
T d1t1ua2          49 SIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKE  128 (215)
T ss_dssp             ECTTSTTCCEEEECCCCHHHHHHHHTSSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCS
T ss_pred             ccccCCCCCccccccCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCC
Confidence            69999999999999                     478999999999999999999999999999999999999999999


Q ss_pred             CC-Cccc
Q psy10681         60 SP-FLKI   65 (67)
Q Consensus        60 ~p-f~~~   65 (67)
                      +| ||.+
T Consensus       129 ~p~lF~d  135 (215)
T d1t1ua2         129 PPEMFMD  135 (215)
T ss_dssp             CCHHHHS
T ss_pred             CchhhcC
Confidence            99 6554