Psyllid ID: psy10725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccEEEEEEEEEEcEEEccccccccccccEEccccHHccccccccccEEcccEEEEEEcccccEEEEEcccccEEEEEEEEEEccccccccccccccccccHHHccccccccEEcccEEEEEEEEEccEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccEccccEEEEEEEEEccccccccccccccccccccHHHHHHcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEEEEEEcccccHccccccccccEEEEccEEEEEcccccccEEEEEEcccccEEEEcccccEEEEc
Coil and Loop (DISEMBL)
MISRAAQKELvgrslctpaiedYEVDLYLRQKWqdqrlkhhsitktldlndpnlvkaiwkpevyfpnakhaefqyvtvpnvlvrinpdgEILYMLSIIENNTNKRKQKrkaldlndpnlvkaiwkpevyfpnakhaefqyvtvpnvlvrinpdgeilyml
Flexible Loop (DISEMBL)
misraaqkelvgrslctpaIEDYEVDLYLRQKWQDQRLKHHsitktldlndpnLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNtnkrkqkrkaldlndpnlVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Low Complexity Region (SEG)
MISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Disordered region (IsUnstruct)
*********LVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENN**********LDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY**
Disordered Region (DISOPRED)
******QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Disordered Region (DISEMBL)
**********VGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Disordered Region (DISPRO)
*ISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q09453	473	Glycine receptor subunit	no	N/A	0.537	0.181	0.413	4e-13
P27681	467	Gamma-aminobutyric acid r	yes	N/A	0.487	0.167	0.443	5e-13
P28473	467	Gamma-aminobutyric acid r	yes	N/A	0.487	0.167	0.443	5e-13
Q99928	467	Gamma-aminobutyric acid r	yes	N/A	0.487	0.167	0.443	5e-13
P34904	457	Gamma-aminobutyric acid r	no	N/A	0.468	0.164	0.421	1e-12
P23416	452	Glycine receptor subunit	no	N/A	0.5	0.176	0.414	1e-12
P22771	452	Glycine receptor subunit	no	N/A	0.5	0.176	0.414	2e-12
Q7TNC8	452	Glycine receptor subunit	no	N/A	0.5	0.176	0.414	2e-12
P21548	474	Gamma-aminobutyric acid r	no	N/A	0.468	0.158	0.421	2e-12
P22723	474	Gamma-aminobutyric acid r	no	N/A	0.468	0.158	0.421	2e-12

>sp|Q09453|GLRB4_CAEEL Glycine receptor subunit beta-type 4 OS=Caenorhabditis elegans GN=ggr-1 PE=3 SV=2

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 7   QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFP 66
           Q  + G S       D++VD+Y ++KW D RL+H++ TK + + DP L   +W P++YF 
Sbjct: 71  QMYIEGMSSFHAQSMDFQVDIYFQEKWVDHRLQHNN-TKRILVKDPKLFGLLWHPDLYFA 129

Query: 67  NAKHAEFQYVTVPNVLVRINPDGEILY 93
           NA+ A F  VT PN LV I P+G + Y
Sbjct: 130 NARTASFHDVTQPNFLVWIYPNGTVWY 156

Caenorhabditis elegans (taxid: 6239)

>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric acid receptor subunit gamma-3 OS=Mus musculus GN=Gabrg3 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y++D++  Q W D RL+ +S  K L LN  N+V  IW P+  F N+K AE  ++T PN 
Sbjct: 91  EYQIDIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIFRNSKTAEAHWITTPNQ 149

Query: 82  LVRINPDGEILYMLSIIEN 100
           L+RI  DG+ILY L +  N
Sbjct: 150 LLRIWNDGKILYTLRLTIN 168

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

>sp|P28473|GBRG3_RAT Gamma-aminobutyric acid receptor subunit gamma-3 OS=Rattus norvegicus GN=Gabrg3 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y++D++  Q W D RL+ +S  K L LN  N+V  IW P+  F N+K AE  ++T PN 
Sbjct: 91  EYQIDIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIFRNSKTAEAHWITTPNQ 149

Query: 82  LVRINPDGEILYMLSIIEN 100
           L+RI  DG+ILY L +  N
Sbjct: 150 LLRIWNDGKILYTLRLTIN 168

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric acid receptor subunit gamma-3 OS=Homo sapiens GN=GABRG3 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y++D++  Q W D RL+ +S  K L LN  N+V  IW P+  F N+K AE  ++T PN 
Sbjct: 91  EYQIDIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIFRNSKTAEAHWITTPNQ 149

Query: 82  LVRINPDGEILYMLSIIEN 100
           L+RI  DG+ILY L +  N
Sbjct: 150 LLRIWNDGKILYTLRLTIN 168

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

>sp|P34904|GBRG4_CHICK Gamma-aminobutyric acid receptor subunit gamma-4 OS=Gallus gallus GN=GABRG4 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y +D++  Q W D+RL+ +S  K L LN  N+V  IW P+ +F N+K A+  ++T PN 
Sbjct: 93  EYTIDIFFAQTWYDRRLRFNSTLKALTLNT-NMVSRIWIPDTFFRNSKRADSHWITTPNQ 151

Query: 82  LVRINPDGEILYMLSI 97
           L+RI  DG++LY L +
Sbjct: 152 LLRIWNDGKVLYTLRL 167

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Gallus gallus (taxid: 9031)

>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 17  TPAIEDYEVDLYLRQKWQDQRLKHHSI-TKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
           T    DY V+++LRQ+W D RL +      +LDL DP+++ +IWKP+++F N K A F  
Sbjct: 86  TETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHD 144

Query: 76  VTVPNVLVRINPDGEILYMLSI 97
           VT  N L+RI+ +G++LY + +
Sbjct: 145 VTTDNKLLRISKNGKVLYSIRL 166

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 17  TPAIEDYEVDLYLRQKWQDQRLKHHSI-TKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
           T    DY V+++LRQ+W D RL +      +LDL DP+++ +IWKP+++F N K A F  
Sbjct: 86  TETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHD 144

Query: 76  VTVPNVLVRINPDGEILYMLSI 97
           VT  N L+RI+ +G++LY + +
Sbjct: 145 VTTDNKLLRISKNGKVLYSIRL 166

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 17  TPAIEDYEVDLYLRQKWQDQRLKHHSI-TKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
           T    DY V+++LRQ+W D RL +      +LDL DP+++ +IWKP+++F N K A F  
Sbjct: 86  TETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHD 144

Query: 76  VTVPNVLVRINPDGEILYMLSI 97
           VT  N L+RI+ +G++LY + +
Sbjct: 145 VTTDNKLLRISKNGKVLYSIRL 166

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P21548|GBRG2_CHICK Gamma-aminobutyric acid receptor subunit gamma-2 OS=Gallus gallus GN=GABRG2 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y +D++  Q W D+RLK +S  K L LN  N+V  IW P+ +F N+K A+  ++T PN 
Sbjct: 109 EYTIDIFFAQTWYDRRLKFNSTIKVLRLNS-NMVGKIWIPDTFFRNSKKADAHWITTPNR 167

Query: 82  LVRINPDGEILYMLSI 97
           ++RI  DG +LY L +
Sbjct: 168 MLRIWNDGRVLYTLRL 183

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Gallus gallus (taxid: 9031)

>sp|P22723|GBRG2_MOUSE Gamma-aminobutyric acid receptor subunit gamma-2 OS=Mus musculus GN=Gabrg2 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           +Y +D++  Q W D+RLK +S  K L LN  N+V  IW P+ +F N+K A+  ++T PN 
Sbjct: 109 EYTIDIFFAQTWYDRRLKFNSTIKVLRLNS-NMVGKIWIPDTFFRNSKKADAHWITTPNR 167

Query: 82  LVRINPDGEILYMLSI 97
           ++RI  DG +LY L +
Sbjct: 168 MLRIWNDGRVLYTLRL 183

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
328715292	343	PREDICTED: glycine receptor subunit beta	0.475	0.221	0.842	2e-32
242000092	362	gamma-aminobutyric acid A recptor, subun	0.512	0.226	0.695	1e-28
391347839	422	PREDICTED: glycine receptor subunit alph	0.562	0.213	0.652	2e-27
241726702	74	conserved hypothetical protein [Ixodes s	0.462	1.0	0.756	4e-26
241173542	75	conserved hypothetical protein [Ixodes s	0.462	0.986	0.756	6e-26
391328876	369	PREDICTED: glycine receptor subunit alph	0.475	0.205	0.710	2e-24
391330514	439	PREDICTED: glycine receptor subunit alph	0.475	0.173	0.469	3e-15
241121565	254	glycine receptor alpha 1 variant, putati	0.475	0.299	0.448	5e-15
391329184	490	PREDICTED: glycine receptor subunit alph	0.475	0.155	0.5	8e-15
427787619	469	Putative glycine receptor alpha 3 [Rhipi	0.475	0.162	0.448	1e-14

>gi|328715292|ref|XP_001943367.2| PREDICTED: glycine receptor subunit beta-type 4-like [Acyrthosiphon pisum]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 71/76 (93%)

Query: 22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
          DYEVDLYLRQKWQD RL+H  IT++LDLNDPNLVKAIWKPEVYFPNAKHAEFQ+VTVPNV
Sbjct: 2  DYEVDLYLRQKWQDARLQHKDITESLDLNDPNLVKAIWKPEVYFPNAKHAEFQFVTVPNV 61

Query: 82 LVRINPDGEILYMLSI 97
          L+RI PDG+ILYML +
Sbjct: 62 LIRIKPDGDILYMLRL 77

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242000092|ref|XP_002434689.1| gamma-aminobutyric acid A recptor, subunit alpha, putative [Ixodes scapularis] gi|215498019|gb|EEC07513.1| gamma-aminobutyric acid A recptor, subunit alpha, putative [Ixodes scapularis]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query: 16 CTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
          C   ++DYEVDLYLRQ WQD RL   ++++ LDLNDP LV+ IWKPEV+F NAKHAEFQY
Sbjct: 3  CDLCLQDYEVDLYLRQTWQDDRLTSSNVSRPLDLNDPKLVQRIWKPEVFFANAKHAEFQY 62

Query: 76 VTVPNVLVRINPDGEILYMLSI 97
          VTVPNVLVR+NP+G+ILYML +
Sbjct: 63 VTVPNVLVRVNPNGKILYMLRL 84

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391347839|ref|XP_003748161.1| PREDICTED: glycine receptor subunit alpha-2-like [Metaseiulus occidentalis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 8   KELVGRSLCT--PAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYF 65
            E+  RS  +  P+  DYEVDLYLRQ WQD R K ++ ++ LDLNDP LV+ IWKPEV+F
Sbjct: 80  SEIFIRSFGSIDPSNMDYEVDLYLRQGWQDDRFKKNTFSRALDLNDPKLVQRIWKPEVFF 139

Query: 66  PNAKHAEFQYVTVPNVLVRINPDGEILYMLSI 97
            NAKHAEFQ+VTVPNVLVRI P GEILYML +
Sbjct: 140 ANAKHAEFQFVTVPNVLVRIKPSGEILYMLRL 171

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241726702|ref|XP_002413761.1| conserved hypothetical protein [Ixodes scapularis] gi|215507577|gb|EEC17069.1| conserved hypothetical protein [Ixodes scapularis]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 64/74 (86%)

Query: 22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
          DYE DLYLRQ W D+RL+  ++++ LDLNDP LV+ IWKPEV+F NAKHAEFQYVTVPNV
Sbjct: 1  DYEGDLYLRQAWIDERLRKSTLSRPLDLNDPKLVQMIWKPEVFFANAKHAEFQYVTVPNV 60

Query: 82 LVRINPDGEILYML 95
          LVRINP GEILYML
Sbjct: 61 LVRINPSGEILYML 74

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241173542|ref|XP_002410862.1| conserved hypothetical protein [Ixodes scapularis] gi|215495026|gb|EEC04667.1| conserved hypothetical protein [Ixodes scapularis]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
          DYEVDLYLRQ+W D R +   IT  LDLNDP LV+ IWKPEV+F NAKHAEFQYVTVPNV
Sbjct: 2  DYEVDLYLRQRWHDDRFEQSGITGPLDLNDPKLVQRIWKPEVFFANAKHAEFQYVTVPNV 61

Query: 82 LVRINPDGEILYML 95
          LVRI+P G+ILYML
Sbjct: 62 LVRISPSGDILYML 75

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391328876|ref|XP_003738909.1| PREDICTED: glycine receptor subunit alpha-2-like [Metaseiulus occidentalis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 64/76 (84%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
           DYEVDLYLRQ+W D RL + +I+  LDLNDP LV+ IWKPEV+F NAKHAEFQ+VTVPNV
Sbjct: 29  DYEVDLYLRQRWFDGRLANVNISAPLDLNDPKLVQKIWKPEVFFANAKHAEFQFVTVPNV 88

Query: 82  LVRINPDGEILYMLSI 97
           LVR++P G ILYML +
Sbjct: 89  LVRLSPHGMILYMLRL 104

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391330514|ref|XP_003739705.1| PREDICTED: glycine receptor subunit alpha-3-like [Metaseiulus occidentalis]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 7/83 (8%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSI-------TKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQ 74
           DY+V+LYLR+ W D R             +  LDLND  ++KAIWKP++YFPNAK  +F 
Sbjct: 102 DYDVELYLRESWDDIRFTSLQFGAGTNNDSSRLDLNDATIIKAIWKPDIYFPNAKEGKFP 161

Query: 75  YVTVPNVLVRINPDGEILYMLSI 97
           +  VPNVL+RI  +G +LY L +
Sbjct: 162 FCHVPNVLLRIEANGRVLYSLRL 184

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241121565|ref|XP_002403250.1| glycine receptor alpha 1 variant, putative [Ixodes scapularis] gi|215493391|gb|EEC03032.1| glycine receptor alpha 1 variant, putative [Ixodes scapularis]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 2/78 (2%)

Query: 22 DYEVDLYLRQKWQDQRL--KHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
          +Y +D+YLRQ W+D+RL    H ++ T+ +N  +++  IWKP+++F N K A+F +VTVP
Sbjct: 1  EYGMDIYLRQSWRDRRLNLSQHGVSSTVTINGEDIMSKIWKPDLFFRNVKDAKFHHVTVP 60

Query: 80 NVLVRINPDGEILYMLSI 97
          N LV+I PDGE+L+ + +
Sbjct: 61 NKLVKIGPDGEVLFSMRL 78

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391329184|ref|XP_003739056.1| PREDICTED: glycine receptor subunit alpha-3-like [Metaseiulus occidentalis]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 22  DYEVDLYLRQKWQDQRLK--HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
           +Y +D+YLRQ W D+RL      I  T+ LN  +L++ IWKP+++F N K A F  VTVP
Sbjct: 152 EYGMDIYLRQSWTDKRLNLSRFGINYTVTLNGEDLMEKIWKPDLFFRNVKRAAFHRVTVP 211

Query: 80  NVLVRINPDGEILYMLSI 97
           N+LVRI PDGE+LY + +
Sbjct: 212 NMLVRIAPDGEVLYSMRL 229

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787619|gb|JAA59261.1| Putative glycine receptor alpha 3 [Rhipicephalus pulchellus]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 22  DYEVDLYLRQKWQDQRL--KHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
           +Y +D+YLRQ WQD RL    + +  T+ +N  +++  IWKP+++F N K A F YVTVP
Sbjct: 134 EYGMDIYLRQSWQDLRLNVSKYGVNSTVTINGEDIMGKIWKPDLFFRNVKEASFHYVTVP 193

Query: 80  NVLVRINPDGEILYMLSI 97
           N LV++ PDGE+L+ + +
Sbjct: 194 NKLVKLGPDGEVLFSMRL 211

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
UNIPROTKB|H0YJP1	258	GABRG3 "Gamma-aminobutyric aci	0.5	0.310	0.432	6.2e-14
WB|WBGene00001587	546	ggr-2 [Caenorhabditis elegans	0.443	0.130	0.486	7.7e-14
UNIPROTKB|C9JBL4	215	GLRA2 "Glycine receptor subuni	0.5	0.372	0.414	7.9e-14
UNIPROTKB|G3V594	253	GABRG3 "Gamma-aminobutyric aci	0.487	0.308	0.443	1e-13
WB|WBGene00001586	473	ggr-1 [Caenorhabditis elegans	0.443	0.150	0.458	2e-13
UNIPROTKB|E5RGG2	222	GABRG2 "Gamma-aminobutyric aci	0.468	0.337	0.421	2.7e-13
UNIPROTKB|Q14C71	366	GLRA1 "GLRA1 protein" [Homo sa	0.468	0.204	0.428	2.9e-13
UNIPROTKB|E2QZJ3	374	GLRA2 "Uncharacterized protein	0.5	0.213	0.414	3.1e-13
UNIPROTKB|F1MNR0	375	GLRA3 "Uncharacterized protein	0.475	0.202	0.435	3.1e-13
UNIPROTKB|F1RJ16	376	GLRA3 "Uncharacterized protein	0.475	0.202	0.435	3.2e-13

UNIPROTKB|H0YJP1 GABRG3 "Gamma-aminobutyric acid receptor subunit gamma-3" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 35/81 (43%), Positives = 51/81 (62%)

Query:    20 IEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
             + +Y++D++  Q W D RL+ +S  K L LN  N+V  IW P+  F N+K AE  ++T P
Sbjct:    31 LSEYQIDIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIFRNSKTAEAHWITTP 89

Query:    80 NVLVRINPDGEILYMLSIIEN 100
             N L+RI  DG+ILY L +  N
Sbjct:    90 NQLLRIWNDGKILYTLRLTIN 110

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00001587 ggr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 188 (71.2 bits), Expect = 7.7e-14, P = 7.7e-14
 Identities = 35/72 (48%), Positives = 49/72 (68%)

Query:    22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
             D+++D+Y +Q W+D RL H+   + L + D  ++  +WKP+VYF NA+ AEF  VT PN 
Sbjct:    76 DFQLDVYFQQFWRDPRLAHNETRRVL-VKDKAVLHKMWKPDVYFANARIAEFHEVTQPNF 134

Query:    82 LVRINPDGEILY 93
             LV I PDG ILY
Sbjct:   135 LVWIQPDGSILY 146

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|C9JBL4 GLRA2 "Glycine receptor subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/82 (41%), Positives = 54/82 (65%)

Query:    17 TPAIEDYEVDLYLRQKWQDQRLKHHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
             T    DY V+++LRQ+W D RL +      +LDL DP+++ +IWKP+++F N K A F  
Sbjct:    70 TETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHD 128

Query:    76 VTVPNVLVRINPDGEILYMLSI 97
             VT  N L+RI+ +G++LY + +
Sbjct:   129 VTTDNKLLRISKNGKVLYSIRL 150

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|G3V594 GABRG3 "Gamma-aminobutyric acid receptor subunit gamma-3" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query:    22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
             +Y++D++  Q W D RL+ +S  K L LN  N+V  IW P+  F N+K AE  ++T PN 
Sbjct:    91 EYQIDIFFAQTWTDSRLRFNSTMKILTLNS-NMVGLIWIPDTIFRNSKTAEAHWITTPNQ 149

Query:    82 LVRINPDGEILYMLSIIEN 100
             L+RI  DG+ILY L +  N
Sbjct:   150 LLRIWNDGKILYTLRLTIN 168

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00001586 ggr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 33/72 (45%), Positives = 49/72 (68%)

Query:    22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
             D++VD+Y ++KW D RL+H++ TK + + DP L   +W P++YF NA+ A F  VT PN 
Sbjct:    86 DFQVDIYFQEKWVDHRLQHNN-TKRILVKDPKLFGLLWHPDLYFANARTASFHDVTQPNF 144

Query:    82 LVRINPDGEILY 93
             LV I P+G + Y
Sbjct:   145 LVWIYPNGTVWY 156

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|E5RGG2 GABRG2 "Gamma-aminobutyric acid receptor subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/76 (42%), Positives = 49/76 (64%)

Query:    22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
             +Y +D++  Q W D+RLK +S  K L LN  N+V  IW P+ +F N+K A+  ++T PN 
Sbjct:    15 EYTIDIFFAQTWYDRRLKFNSTIKVLRLNS-NMVGKIWIPDTFFRNSKKADAHWITTPNR 73

Query:    82 LVRINPDGEILYMLSI 97
             ++RI  DG +LY L +
Sbjct:    74 MLRIWNDGRVLYTLRL 89

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|Q14C71 GLRA1 "GLRA1 protein" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 33/77 (42%), Positives = 53/77 (68%)

Query:    22 DYEVDLYLRQKWQDQRLKHHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
             DY V+++LRQ+W D RL ++     +LDL DP+++ +IWKP+++F N K A F  +T  N
Sbjct:     2 DYRVNIFLRQQWNDPRLAYNEYPDDSLDL-DPSMLDSIWKPDLFFANEKGAHFHEITTDN 60

Query:    81 VLVRINPDGEILYMLSI 97
              L+RI+ +G +LY + I
Sbjct:    61 KLLRISRNGNVLYSIRI 77

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|E2QZJ3 GLRA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 34/82 (41%), Positives = 54/82 (65%)

Query:    17 TPAIEDYEVDLYLRQKWQDQRLKHHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQY 75
             T    DY V+++LRQ+W D RL +      +LDL DP+++ +IWKP+++F N K A F  
Sbjct:    86 TETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHD 144

Query:    76 VTVPNVLVRINPDGEILYMLSI 97
             VT  N L+RI+ +G++LY + +
Sbjct:   145 VTTDNKLLRISKNGKVLYSIRL 166

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 34/78 (43%), Positives = 52/78 (66%)

Query:    21 EDYEVDLYLRQKWQDQRLKHHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
             +DY V+++LRQKW D RL +      +LDL DP+++ +IWKP+++F N K A F  VT  
Sbjct:     2 QDYRVNIFLRQKWNDPRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHEVTTD 60

Query:    80 NVLVRINPDGEILYMLSI 97
             N L+RI  +G +LY + +
Sbjct:    61 NKLLRIFKNGNVLYSIRL 78

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 34/78 (43%), Positives = 52/78 (66%)

Query:    21 EDYEVDLYLRQKWQDQRLKHHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
             +DY V+++LRQKW D RL +      +LDL DP+++ +IWKP+++F N K A F  VT  
Sbjct:     1 QDYRVNIFLRQKWNDPRLAYSEYPDDSLDL-DPSMLDSIWKPDLFFANEKGANFHEVTTD 59

Query:    80 NVLVRINPDGEILYMLSI 97
             N L+RI  +G +LY + +
Sbjct:    60 NKLLRIFKNGNVLYSIRL 77

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	8e-14
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	8e-14
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	5e-08
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	3e-06

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 65.7 bits (161), Expect = 8e-14
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 21  EDYEVDLYLRQKWQDQRLK-----HHSITK-TLDLNDPNLVKAIWKPEVYFPNAKHAEFQ 74
           +D   +++LRQ+W D+RL      +  IT   L  +       IWKP++   N K     
Sbjct: 45  QDLTTNVWLRQQWTDERLAWDPEDYGGITSLRLPSDK------IWKPDIVLYN-KADGIH 97

Query: 75  YVTVPNVLVRINPDGEILYMLSII 98
            +T PN  VR+ PDG +L+    I
Sbjct: 98  DITTPNTNVRVYPDGTVLWSPPAI 121

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 12/83 (14%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKA------IWKPEVYFPNAKHAEFQY 75
           DY  +++LRQ+W D+RL+ +          P +         IW P+++F N K A F  
Sbjct: 75  DYTTNIWLRQEWTDERLQWN------PEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHG 128

Query: 76  VTVPNVLVRINPDGEILYMLSII 98
           +T+ NVLVRI+P+G +LY   I 
Sbjct: 129 ITMTNVLVRIHPNGSVLYSPRIT 151

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 113 DLNDPNLVKA------IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY 158
               P +         IW P+++F N K A F  +T+ NVLVRI+P+G +LY
Sbjct: 95  PEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLY 146

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
           IWKP++   N K      +T PN  VR+ PDG +L+ 
Sbjct: 82  IWKPDIVLYN-KADGIHDITTPNTNVRVYPDGTVLWS 117

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG3643|consensus	459		99.94
KOG3644|consensus	457		99.86
TIGR00860	459	LIC Cation transporter family protein. selective w	99.82
KOG3642|consensus	466		99.82
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.71
KOG3643|consensus	459		99.7
KOG3646|consensus	486		99.69
KOG3645|consensus	449		99.67
KOG3642|consensus	466		99.52
KOG3644|consensus	457		99.45
TIGR00860	459	LIC Cation transporter family protein. selective w	98.19
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	97.82
KOG3645|consensus	449		89.82
KOG3646|consensus	486		80.64

>KOG3643|consensus

Probab=99.94  E-value=1.4e-27  Score=195.15  Aligned_cols=100  Identities=31%  Similarity=0.600  Sum_probs=94.1

Q ss_pred             ceeeEEeccCCCCcccceEEEeEEEEeEEEecccccC-CCCceEEcCCCcccCCCcccCcccccCcccccceeeeccEEE
Q psy10725          5 AAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHH-SITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLV   83 (160)
Q Consensus         5 ~~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~-~~~~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~   83 (160)
                      +..+++.+|++|||++||||+++|+||+|+||||+|+ .....+++ +++..++||.||+||.|+|++-+|.++..|.++
T Consensus        62 gi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl-~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~l  140 (459)
T KOG3643|consen   62 GITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL-DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLL  140 (459)
T ss_pred             EEEEEEeeechhccccchhhhhhhhhhhhcCcccccCCCCCceEEE-chhhhhccccCceecccCcccccceeeecceEE
Confidence            4567779999999999999999999999999999999 33478999 899999999999999999999999999999999


Q ss_pred             EEeeCCceeEEEeEEEeecccc
Q psy10725         84 RINPDGEILYMLSIIENNTNKR  105 (160)
Q Consensus        84 ~i~~dG~v~ys~rl~l~~tc~~  105 (160)
                      |+.+||+|.|++|++.+.+|.+
T Consensus       141 Rl~~dGtVlys~RlT~Ta~C~M  162 (459)
T KOG3643|consen  141 RLHPDGTVLYSIRLTVTAACPM  162 (459)
T ss_pred             EEcCCCeEEEEEEEEEEEeccc
Confidence            9999999999999999999985

>KOG3644|consensus

Probab=99.86  E-value=1.5e-21  Score=163.95  Aligned_cols=121  Identities=31%  Similarity=0.497  Sum_probs=95.2

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccC-CCCceEEcCCCccc--CCCcccCcccccCcccccceeeeccEEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHH-SITKTLDLNDPNLV--KAIWKPEVYFPNAKHAEFQYVTVPNVLV   83 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~-~~~~~i~l~~~~~~--~~iW~PDi~~~N~~~~~~~~~~~~n~~~   83 (160)
                      -+.+++|++|+|.+|+|++++|++|+|+||||+++ .....+........  ++||.||++|.|+|.+.+|.++.+|.++
T Consensus        71 ~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll  150 (457)
T KOG3644|consen   71 EITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLL  150 (457)
T ss_pred             EEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEE
Confidence            34459999999999999999999999999999998 44221111011223  5699999999999999999999999999


Q ss_pred             EEeeCCceeEEEeEEEeecccc-------cccc-----ceeeCCChhhhcccccccc
Q psy10725         84 RINPDGEILYMLSIIENNTNKR-------KQKR-----KALDLNDPNLVKAIWKPEV  128 (160)
Q Consensus        84 ~i~~dG~v~ys~rl~l~~tc~~-------~~~~-----~~l~l~~~~~~~~iW~Pd~  128 (160)
                      +|++||+|.|+.|+.++.+|.+       |.+.     ++..++ .+-+...|.+..
T Consensus       151 ~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn-~~~v~~~W~~~~  206 (457)
T KOG3644|consen  151 MIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYN-TDDVRLEWKEWN  206 (457)
T ss_pred             EEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccc-cceEEEEecCCC
Confidence            9999999999999999999974       3333     344453 455567776654

>TIGR00860 LIC Cation transporter family protein

Probab=99.82  E-value=3e-20  Score=157.18  Aligned_cols=105  Identities=30%  Similarity=0.500  Sum_probs=90.8

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+++|++|++++++|++|+|+|+||+|++.+    +.+.+ +   .++||+||++++|++++.++....++..
T Consensus        60 ~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~-~---~~~IW~PDi~l~N~~~~~~~~~~~~~~~  135 (459)
T TIGR00860        60 NLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRT-P---DDSIWVPDIFFYNEKDARFHGITMTNVL  135 (459)
T ss_pred             EEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccc-c---ccccccCcEEeecCccccccccccCceE
Confidence            45568999999999999999999999999999999874    23445 2   6999999999999999998887778889


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeCC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN  115 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~  115 (160)
                      +++++||+|.|..+..++.+|..       |.+.|.+.++
T Consensus       136 v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fg  175 (459)
T TIGR00860       136 VRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFE  175 (459)
T ss_pred             EEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEh
Confidence            98889999999999999999973       5677777663

selective while glycine receptors are anion selective).

>KOG3642|consensus

Probab=99.82  E-value=4.4e-20  Score=152.09  Aligned_cols=98  Identities=29%  Similarity=0.523  Sum_probs=90.6

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCCceEEcCCCcccCCCcccCcccccCcccccceeeeccEEEEEe
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRIN   86 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~~i~   86 (160)
                      ...+.+++-|++.+|+|++++++||.|.|+||+++...+.+.+ ......+||+||++|.|+|++..|..+.+|.++||+
T Consensus        73 di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~L-n~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~  151 (466)
T KOG3642|consen   73 DIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPL-NSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIY  151 (466)
T ss_pred             EEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhcc-chhhhcCcccCCcccccCcccceeeccCCCceEEEe
Confidence            3445899999999999999999999999999999966666778 578899999999999999999999999999999999


Q ss_pred             eCCceeEEEeEEEeecccc
Q psy10725         87 PDGEILYMLSIIENNTNKR  105 (160)
Q Consensus        87 ~dG~v~ys~rl~l~~tc~~  105 (160)
                      .||++.|+.|+++...|++
T Consensus       152 ~dG~vlyt~RlTi~A~C~m  170 (466)
T KOG3642|consen  152 IDGTVLYTMRLTIPAECPM  170 (466)
T ss_pred             ECCcceEEEEEeecccCcc
Confidence            9999999999999999984

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.71  E-value=3.9e-17  Score=124.90  Aligned_cols=104  Identities=22%  Similarity=0.397  Sum_probs=79.3

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      +.+.+.+|.+++|.++.+++++++++.|.|+||+|++.+    ..+.+ +   .+.||+||++++|..+.. +..+....
T Consensus        30 v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v-~---~~~iW~P~l~~~n~~~~~-~~~~~~~~  104 (217)
T PF02931_consen   30 VSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRV-P---SSQIWTPDLYFYNSVSGS-FEITEPNS  104 (217)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEE-E---GGGS----EEETTBSSSE-EECS-SSE
T ss_pred             EEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccc-c---ccceEecccccccccccc-eecccccc
Confidence            455568899999999999999999999999999999875    46677 3   569999999999954433 33343577


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      .+.|+++|+|.|..++.++..|.+       +.+.|.|.+
T Consensus       105 ~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~  144 (217)
T PF02931_consen  105 NVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKF  144 (217)
T ss_dssp             EEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEE
T ss_pred             cccccccchheeeecccccccccccccccccccceeEEEE
Confidence            899999999999999999999974       345565544

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3643|consensus

Probab=99.70  E-value=3.9e-18  Score=140.04  Aligned_cols=73  Identities=33%  Similarity=0.651  Sum_probs=67.5

Q ss_pred             eCCceeEEEeEEEeeccccc------cccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEeC
Q psy10725         87 PDGEILYMLSIIENNTNKRK------QKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML  160 (160)
Q Consensus        87 ~dG~v~ys~rl~l~~tc~~~------~~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s~  160 (160)
                      +.-+|+|+..++++++|+|.      ....++++ +.+++++||+|||||.|+|+|.+|++|+.|.++|++|||+|+||+
T Consensus        74 SEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl-~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~  152 (459)
T KOG3643|consen   74 SEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL-DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSI  152 (459)
T ss_pred             ccccchhhhhhhhhhhhcCcccccCCCCCceEEE-chhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEE
Confidence            56779999999999999984      35579999 799999999999999999999999999999999999999999984

>KOG3646|consensus

Probab=99.69  E-value=1.1e-17  Score=138.00  Aligned_cols=105  Identities=18%  Similarity=0.263  Sum_probs=89.4

Q ss_pred             ceeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeecc
Q psy10725          5 AAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN   80 (160)
Q Consensus         5 ~~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n   80 (160)
                      ..++.+|+|.+|||+||..+++.|++.+|+|.+|+|++++    +.+++ +   .++||+||+.+||+++..|...-..|
T Consensus        55 ~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~-p---~~~iWkPDVLLYNSade~FDsTy~tN  130 (486)
T KOG3646|consen   55 KLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRF-P---GGNIWKPDVLLYNSADEQFDSTYKTN  130 (486)
T ss_pred             EeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeecc-C---CccccCCceeccccccccCCCcceee
Confidence            3456779999999999999999999999999999999984    55677 3   45999999999999999987654444


Q ss_pred             EEEEEeeCCceeEEEeEEEeeccc-------cccccceeeCC
Q psy10725         81 VLVRINPDGEILYMLSIIENNTNK-------RKQKRKALDLN  115 (160)
Q Consensus        81 ~~~~i~~dG~v~ys~rl~l~~tc~-------~~~~~~~l~l~  115 (160)
                        +.++++|.|.|.++-.++++|+       ++.+.+.+.++
T Consensus       131 --~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFG  170 (486)
T KOG3646|consen  131 --YVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFG  170 (486)
T ss_pred             --EEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEee
Confidence              6689999999999999999997       35666777663

>KOG3645|consensus

Probab=99.67  E-value=1.2e-16  Score=134.89  Aligned_cols=103  Identities=17%  Similarity=0.330  Sum_probs=88.1

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      ++.+.++.+|+|++|..++.+|+.++|+|+||+||+++    +.+.+ +   .++||+||++++|++++.+......+  
T Consensus        60 ~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~v-p---~~~IW~Pdi~l~N~~~~~~~~~~~~~--  133 (449)
T KOG3645|consen   60 GLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRV-P---SSKIWLPDIVLYNNADGDFEVEDLTN--  133 (449)
T ss_pred             EEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEe-c---HHHcCcCcEEEEecccccccccccce--
Confidence            34479999999999999999999999999999999974    56777 3   88999999999998888876555444  


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeCC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN  115 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~  115 (160)
                      +.++.+|+|.|..++.++++|+.       |.|.|.+.++
T Consensus       134 v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~  173 (449)
T KOG3645|consen  134 VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFG  173 (449)
T ss_pred             EEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEe
Confidence            77889999999999999999973       5677888764

>KOG3642|consensus

Probab=99.52  E-value=1.7e-14  Score=119.28  Aligned_cols=80  Identities=30%  Similarity=0.529  Sum_probs=69.4

Q ss_pred             cEEEEEeeCC-----ceeEEEeEEEeecccc-----ccccceeeCCChhhhcccccccceecCcccceeeecccCceEEE
Q psy10725         80 NVLVRINPDG-----EILYMLSIIENNTNKR-----KQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVR  149 (160)
Q Consensus        80 n~~~~i~~dG-----~v~ys~rl~l~~tc~~-----~~~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~  149 (160)
                      .+.+.|.+.|     .+.|+.+.+++++|.|     +...+.|.++ ..++.+||+|||||.|+|+|..|.++++|.++|
T Consensus        71 ~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~Ln-~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~R  149 (466)
T KOG3642|consen   71 ETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPLN-SLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVR  149 (466)
T ss_pred             EEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhccc-hhhhcCcccCCcccccCcccceeeccCCCceEE
Confidence            3445555544     5899999999999987     4566778895 899999999999999999999999999999999


Q ss_pred             EecCCcEEEeC
Q psy10725        150 INPDGEILYML  160 (160)
Q Consensus       150 i~~~G~v~~s~  160 (160)
                      |.+||+|+|++
T Consensus       150 i~~dG~vlyt~  160 (466)
T KOG3642|consen  150 IYIDGTVLYTM  160 (466)
T ss_pred             EeECCcceEEE
Confidence            99999999974

>KOG3644|consensus

Probab=99.45  E-value=9.9e-14  Score=116.89  Aligned_cols=73  Identities=30%  Similarity=0.474  Sum_probs=58.9

Q ss_pred             CCceeEEEeEEEeecccccc------ccceeeCCChhhhc--ccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         88 DGEILYMLSIIENNTNKRKQ------KRKALDLNDPNLVK--AIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~------~~~~l~l~~~~~~~--~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      .-++.|..++.+++.|.|++      ..+.+......+..  +||.||+||.|+|+|.+|.++.+|.+++|+|||+|+|+
T Consensus        82 e~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~  161 (457)
T KOG3644|consen   82 EITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYS  161 (457)
T ss_pred             cccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEE
Confidence            34578999999999999973      32333222334444  59999999999999999999999999999999999997


Q ss_pred             C
Q psy10725        160 L  160 (160)
Q Consensus       160 ~  160 (160)
                      .
T Consensus       162 ~  162 (457)
T KOG3644|consen  162 Y  162 (457)
T ss_pred             E
Confidence            3

>TIGR00860 LIC Cation transporter family protein

Probab=98.19  E-value=2.9e-06  Score=72.24  Aligned_cols=67  Identities=31%  Similarity=0.564  Sum_probs=54.1

Q ss_pred             CceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         89 GEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        89 G~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      -+..++..+.+++.|.|..         ..+.+.++    .++||+||++|.|++++.+|.....|.++++++||+|.|.
T Consensus        72 ~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~----~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~  147 (459)
T TIGR00860        72 KNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTP----DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYS  147 (459)
T ss_pred             ccceEEEeeeeeeEEeCCccCCCCccCCCceecccc----ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEe
Confidence            4457888899999999842         12233332    2789999999999999999999999999999999999885

selective while glycine receptors are anion selective).

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=97.82  E-value=5.2e-05  Score=57.70  Aligned_cols=67  Identities=24%  Similarity=0.407  Sum_probs=47.2

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .....++..+.+.+.|.|..         ..+.+.++ .   ++||+||++|.| +.+..+..+..+..++|+++|+|.+
T Consensus        42 e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~-~---~~iW~P~l~~~n-~~~~~~~~~~~~~~~~v~~~G~V~~  116 (217)
T PF02931_consen   42 ESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP-S---SQIWTPDLYFYN-SVSGSFEITEPNSNVRVYSDGTVRY  116 (217)
T ss_dssp             TTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEE-G---GGS----EEETT-BSSSEEECS-SSEEEEEETTSEEEE
T ss_pred             cccchhhhhhhhceeccccccccChhhccCccccccc-c---cceEeccccccc-ccccceecccccccccccccchhee
Confidence            34567888999999998732         33555553 3   389999999999 6666777777889999999999987


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      .
T Consensus       117 ~  117 (217)
T PF02931_consen  117 S  117 (217)
T ss_dssp             E
T ss_pred             e
Confidence            5

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3645|consensus

Probab=89.82  E-value=0.25  Score=42.21  Aligned_cols=46  Identities=22%  Similarity=0.483  Sum_probs=34.8

Q ss_pred             ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725        108 KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus       108 ~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      ..+.+.++    .++||+||++..|...+.+......|  +.++.+|+|.+.
T Consensus       100 ~I~~i~vp----~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~  145 (449)
T KOG3645|consen  100 GITKIRVP----SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWY  145 (449)
T ss_pred             CceEEEec----HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEE
Confidence            33556663    25799999999998778877777766  677789999763

>KOG3646|consensus

Probab=80.64  E-value=1.2  Score=38.03  Aligned_cols=35  Identities=29%  Similarity=0.606  Sum_probs=29.9

Q ss_pred             ccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725        122 AIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus       122 ~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      +||+||+...|+.+..|-+.-..|  +.++.+|+|.|
T Consensus       107 ~iWkPDVLLYNSade~FDsTy~tN--~Vv~~tG~v~~  141 (486)
T KOG3646|consen  107 NIWKPDVLLYNSADEQFDSTYKTN--YVVYSTGSVLW  141 (486)
T ss_pred             cccCCceeccccccccCCCcceee--EEEccCCeeee
Confidence            999999999999998887777766  45679999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		9e-08
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		6e-05

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLV-----KAIWKPEVYFPNAKHAEFQYV 76
           +Y   L LR+ W D+RL +           P+ V       IW P+ +FPN K A    +
Sbjct: 48  EYSAQLTLRESWIDKRLSYGVKGD----GQPDFVILTVGHQIWMPDTFFPNEKQAYKHTI 103
Query: 77  TVPNVLVRINPDGEILYMLSI 97
             PNVL+RI+ DG +LY + I
Sbjct: 104 DKPNVLIRIHNDGTVLYSVRI 124

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY 158
           IW P+ +FPN K A    +  PNVL+RI+ DG +LY
Sbjct: 85  IWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	2e-24
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	4e-13
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	4e-22
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	9e-21
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	2e-08
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	9e-20
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	2e-08

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 22  DYEVDLYLRQKWQDQRLKH-HSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
           +Y   L LR+ W D+RL +        D     +   IW P+ +FPN K A    +  PN
Sbjct: 48  EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPN 107

Query: 81  VLVRINPDGEILYMLSII 98
           VL+RI+ DG +LY + I 
Sbjct: 108 VLIRIHNDGTVLYSVRIS 125

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
              +   IW P+ +FPN K A    +  PNVL+RI+ DG +LY +
Sbjct: 78  ILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSV 122

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 89.3 bits (222), Expect = 4e-22
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLN---DPNLVKAIWKPEVYFPNAKHAEFQYVTV 78
            Y+VD Y+  +W  +  K       +  N   +  +   +W P + F N   +       
Sbjct: 32  TYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS----PDT 87

Query: 79  PNVLVRINPDGEILYMLSII 98
            N  + + PDG ++Y    +
Sbjct: 88  GNKRLMLFPDGRVIYNARFL 107

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 83.2 bits (206), Expect = 9e-21
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 21  EDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
           E ++V+ +L   W+D+RL    +   + +      +AIW PE+ F N ++A    V    
Sbjct: 35  ETFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENARDADVV--- 90

Query: 81  VLVRINPDGEILYMLSII 98
             + ++PDG + Y+    
Sbjct: 91  -DISVSPDGTVQYLERFS 107

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
                +AIW PE+ F N ++A    V      + ++PDG + Y+ 
Sbjct: 64  KTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLE 104

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 82.7 bits (205), Expect = 9e-20
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 22  DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
            ++V+ +L   W+D+RL    +   + +      +AIW PE+ F N ++A    V     
Sbjct: 40  TFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENARDADVV---- 94

Query: 82  LVRINPDGEILYMLSII 98
            + ++PDG + Y+    
Sbjct: 95  DISVSPDGTVQYLERFS 111

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
                +AIW PE+ F N ++A    V      + ++PDG + Y+ 
Sbjct: 68  KTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLE 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	99.88
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.88
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.88
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.87
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.87
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.87
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.87
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.87
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.86
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	99.86
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.85
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.84
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.84
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.84
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.84
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.83
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.82
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.82
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.82
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.81
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	98.79
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	98.66
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	98.64
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	98.6
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	98.54
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	98.53
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	98.52
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	98.47
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	98.46
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	98.45
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	98.45
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	98.44
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	98.41
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	98.37
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	98.22
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	98.21
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	98.2
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	98.17
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	98.16
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	98.14

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=99.88  E-value=6.3e-23  Score=156.33  Aligned_cols=115  Identities=19%  Similarity=0.289  Sum_probs=93.4

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      +++.+.+|.+|+|++|+|++++|++|+|.|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....  .
T Consensus        34 ~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~-~---~~~iW~PDi~~~N~~~~~~~~~~~--~  107 (212)
T 2qc1_B           34 VGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI-P---SEKIWRPDVVLYNNADGDFAIVKF--T  107 (212)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEE-C---GGGSCCCCEEECCBTTTSSCEECC--C
T ss_pred             EEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEc-c---hhhccCCceeccccccccccccce--e
Confidence            345568999999999999999999999999999999863    56777 4   799999999999999999987654  4


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeCC----Chhhhcccccc
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN----DPNLVKAIWKP  126 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~----~~~~~~~iW~P  126 (160)
                      .++|+++|+|.|..|+.++++|.+       +.+.|.+.++    +.+-+...|..
T Consensus       108 ~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  163 (212)
T 2qc1_B          108 KVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPES  163 (212)
T ss_dssp             CEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESC
T ss_pred             eEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecc
Confidence            688999999999999999999974       4456666542    23444455643

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.88  E-value=4.7e-23  Score=158.75  Aligned_cols=113  Identities=10%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+|+|++|+|++++|++|+|.|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|..   +..
T Consensus        43 ~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~-~---~~~IW~PDi~l~N~~~~~~~~~---~~~  115 (228)
T 2wn9_A           43 GFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRT-S---AADIWTPDITAYSSTRPVQVLS---PQI  115 (228)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEE-E---GGGSCCCCEEESSBSSCCEECS---CCE
T ss_pred             EEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEe-c---HHHccCCceecccccccccccc---cce
Confidence            44558999999999999999999999999999999873    46677 3   7899999999999999998763   788


Q ss_pred             EEEeeCCceeEEEeEEEeeccc---cc---cccceeeCC----Chhhhcccccc
Q psy10725         83 VRINPDGEILYMLSIIENNTNK---RK---QKRKALDLN----DPNLVKAIWKP  126 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~---~~---~~~~~l~l~----~~~~~~~iW~P  126 (160)
                      ++|+++|+|.|+.|+.++++|.   ++   .+.|.+.++    +.+-+...|..
T Consensus       116 v~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~Sw~y~~~~i~l~~~~  169 (228)
T 2wn9_A          116 AVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDT  169 (228)
T ss_dssp             EEEETEEEEEECCEEEEEEECCCTTTTSTTCEEEEEEEEESSCCTTTEEEECSC
T ss_pred             EEEeCCeEEEEeCCEEEEEECCCCCCCCCcCcEeeEEEEeecccccEEEEEecC
Confidence            9999999999999999999999   52   344444332    24445556654

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.88  E-value=1.4e-22  Score=164.52  Aligned_cols=117  Identities=29%  Similarity=0.449  Sum_probs=96.1

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+++|++|+|++++|++|+|+|+||+|++.+    +.+.+.+   .++||+||++|+|++++.+|..+.+|..
T Consensus        33 ~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~---~~~IW~PDi~l~N~~~~~~~~~~~~n~~  109 (347)
T 3rhw_A           33 NMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTV---GHQIWMPDTFFPNEKQAYKHTIDKPNVL  109 (347)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCT---TCCCCCCCEECTTEEEEEECCSSSCSEE
T ss_pred             EEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecc---hhceecCCEeeeccccccccccccccEE
Confidence            45568999999999999999999999999999998763    3455522   5999999999999999999988888999


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeCC----Chhhhcccccc
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN----DPNLVKAIWKP  126 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~----~~~~~~~iW~P  126 (160)
                      ++|++||+|.|..|+.++++|.+       |.+.|.+.++    +.+.+.-.|..
T Consensus       110 v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  164 (347)
T 3rhw_A          110 IRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE  164 (347)
T ss_dssp             EEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECS
T ss_pred             EEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecC
Confidence            99999999999999999999973       4566666542    23344445543

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.87  E-value=8e-23  Score=154.75  Aligned_cols=101  Identities=22%  Similarity=0.376  Sum_probs=85.0

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC---ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT---KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~---~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      +.+.+.+|.+|+|++|+|++++|++|+|.|+||+|++.+   ..+.+    +.++||+||++|+|++++..    ..+..
T Consensus        20 ~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~----~~~~IW~PDi~l~N~~~~~~----~~~~~   91 (201)
T 3igq_A           20 TGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY----EPEAIWIPEIRFVNVENARD----ADVVD   91 (201)
T ss_dssp             EEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEEC----CGGGSCCCCEEESSBSSSCE----EEEEE
T ss_pred             EEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEecc----cccCcCccCEEEEccccccc----ccceE
Confidence            455669999999999999999999999999999999864   33444    48999999999999987653    35788


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ++|+++|+|.|..|+.++++|.+       +.+.|.+.+
T Consensus        92 v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f  130 (201)
T 3igq_A           92 ISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYL  130 (201)
T ss_dssp             EEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEE
T ss_pred             EEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEE
Confidence            99999999999999999999973       455566654

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.87  E-value=1.9e-22  Score=155.57  Aligned_cols=114  Identities=10%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             eeEEeccCCCCcc----cceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeee
Q psy10725          7 QKELVGRSLCTPA----IEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTV   78 (160)
Q Consensus         7 ~~~~~~i~~i~E~----~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~   78 (160)
                      .+.+.+|.+|+|+    +|+|++++|++|+|.|+||+|++.+    ..+.+ +   .++||+||++|+|++++.++... 
T Consensus        39 ~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l-~---~~~IW~PDi~l~N~~~~~~~~~~-  113 (230)
T 4afh_A           39 GLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEI-S---PDEIWTPDIKLFNSVDLDMTLDR-  113 (230)
T ss_dssp             EEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEE-C---GGGSCCCCEEETTCSSSSCEECT-
T ss_pred             EEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEe-c---cCCEECCcEEEEecccccccccc-
Confidence            4456899999999    9999999999999999999999874    56777 3   79999999999999999987543 


Q ss_pred             ccEEEEEeeCCceeEEEeEEEeeccc--cccccceeeCC----Chhhhcccccc
Q psy10725         79 PNVLVRINPDGEILYMLSIIENNTNK--RKQKRKALDLN----DPNLVKAIWKP  126 (160)
Q Consensus        79 ~n~~~~i~~dG~v~ys~rl~l~~tc~--~~~~~~~l~l~----~~~~~~~iW~P  126 (160)
                       +..++|+++|+|.|..++.++++|.  ++.+.|.+.++    +.+-+...|..
T Consensus       114 -~~~v~v~~~G~V~~~~~~~~~s~C~mPfD~Q~C~l~f~S~~y~~~~v~l~~~~  166 (230)
T 4afh_A          114 -TTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMD  166 (230)
T ss_dssp             -TSCEEEETTSEEEECCEEEEEEEEEEETTEEEEEEEEEESSCCTTTEEEEEGG
T ss_pred             -cceEEEEcCCEEEEecCEEEEEECCCCCCcccCCEeeccccccCceEEEEECC
Confidence             3457899999999999999999995  56666666542    24444555654

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.87  E-value=2.4e-22  Score=152.15  Aligned_cols=114  Identities=20%  Similarity=0.261  Sum_probs=93.2

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEeccc-ccCCCC--ceEEcCCCcccCCCcccCcccccC-cccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRL-KHHSIT--KTLDLNDPNLVKAIWKPEVYFPNA-KHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL-~~~~~~--~~i~l~~~~~~~~iW~PDi~~~N~-~~~~~~~~~~~n~   81 (160)
                      ..+.+.+|.+|+|++|+|++++|++|+|.|+|| +|++.+  ..+.+ +   .++||+||++|+|+ +++.+|..    .
T Consensus        29 ~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~-~---~~~iW~PDi~~~N~~~~~~~~~~----~  100 (203)
T 2bj0_A           29 LNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSL-P---VSKMWTPDLSFYNAIAAPELLSA----D  100 (203)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEE-E---GGGSCCCCEEETTCSSCCEECSC----C
T ss_pred             EEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccCCceEEEE-c---hhhccCCCccccccccccccccc----e
Confidence            345669999999999999999999999999999 999875  45666 3   78999999999999 99998865    5


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-c-----cccceeeCC----Chhhhccccccc
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-K-----QKRKALDLN----DPNLVKAIWKPE  127 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-~-----~~~~~l~l~----~~~~~~~iW~Pd  127 (160)
                      .++|+++|+|.|+.|+.++++|.+ +     .+.|.+.++    +.+-+...|..+
T Consensus       101 ~v~i~~~G~V~~~~~~~~~~~C~m~dl~~fD~Q~C~l~f~S~~y~~~~v~l~~~~~  156 (203)
T 2bj0_A          101 RVVVSKDGSVIYVPSQRVRFTCDLINVDTEPGATCRIKVGSWTHDNKQFALITGEE  156 (203)
T ss_dssp             EEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTTEEEEECTT
T ss_pred             EEEEeCCcEEEEecceEEEEEccccccCccccceeeEEEEcccccCcEEEEEecCC
Confidence            788999999999999999999997 3     345555442    244455566544

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.87  E-value=3.3e-22  Score=152.28  Aligned_cols=114  Identities=19%  Similarity=0.324  Sum_probs=91.4

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC--ceEEcCCCcccCCCcccCcccccCcccccceeeeccEEEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT--KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVR   84 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~--~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~~   84 (160)
                      .+.+.+|.+|+|++|+|++++|++|+|.|+||+|++.+  ..+.+ +   .++||+||++|+|++++.  ..+.+ ..++
T Consensus        33 ~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~~l~~-~---~~~iW~PDi~~~N~~~~~--~~~~~-~~~~  105 (211)
T 1uw6_A           33 SLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSV-P---ISSLWVPDLAAYNAISKP--EVLTP-QLAR  105 (211)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEE-E---GGGSCCCCEEETTBCSCC--EECSC-CEEE
T ss_pred             EEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCCeEEc-c---HHHccCCCEeeecccccc--cccee-eEEE
Confidence            45568999999999999999999999999999999873  46777 3   789999999999999988  34444 7899


Q ss_pred             EeeCCceeEEEeEEEeeccc---cc---cccceeeCC----Chhhhccccccc
Q psy10725         85 INPDGEILYMLSIIENNTNK---RK---QKRKALDLN----DPNLVKAIWKPE  127 (160)
Q Consensus        85 i~~dG~v~ys~rl~l~~tc~---~~---~~~~~l~l~----~~~~~~~iW~Pd  127 (160)
                      |+++|+|.|..|+.++++|.   ++   .+.|.+.++    +.+-+...|..+
T Consensus       106 i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~S~~y~~~~i~l~~~~~  158 (211)
T 1uw6_A          106 VVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTE  158 (211)
T ss_dssp             EETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTTEEEEECCC
T ss_pred             EeCCceEEEeCCEEEEEECCCCCCCCCcceEeEEEEEcccccCceEEEEeccc
Confidence            99999999999999999999   52   344444432    244455566543

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.87  E-value=3e-22  Score=151.99  Aligned_cols=102  Identities=20%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC---ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT---KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~---~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      ..+.|.+|.+|+|++|++++++|++|+|.|+||+|++.-   ..+.+ +   .++||+||++|+|+++...+   ..+..
T Consensus        33 ~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v-~---~~~IW~PDi~l~N~~~~~~~---~~~~~  105 (205)
T 4aoe_A           33 FKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTL-P---SKYIWLPHIEVYNSIGKPGI---HSDQL  105 (205)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEE-E---GGGSCCCCCEETTBSSCCEE---CSCCE
T ss_pred             EEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEe-C---HHHhccccEEEecccccccc---ccceE
Confidence            345569999999999999999999999999999999752   46677 3   78999999999999876532   35678


Q ss_pred             EEEeeCCceeEEEeEEEeecccc------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~------~~~~~~l~l  114 (160)
                      ++|+++|+|.|..++.++++|..      +.+.|.+.+
T Consensus       106 v~v~~~G~V~~~~~~~~~s~C~~d~~fPfD~Q~C~l~f  143 (205)
T 4aoe_A          106 VRVYKDGTVTFVPQYTIRFSCALENVTTEQGAACTLKF  143 (205)
T ss_dssp             EEEETTSEEEECCEEEEEEECCCTTSSSSSCEEEEEEE
T ss_pred             EEEeCCcEEEEeCcEEEEEecccCcCCCccCCeEEEEE
Confidence            99999999999999999999974      456677765

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.86  E-value=4.2e-22  Score=151.24  Aligned_cols=101  Identities=17%  Similarity=0.291  Sum_probs=84.1

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC---ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT---KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~---~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      ..+.|.+|.+|+|++|++++++|++|+|+|+||+|++.-   ..+.+ +   .++||+||++|+|++++..   ...+..
T Consensus        33 ~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v-~---~~~IW~PDi~l~N~~~~~~---~~~~~~  105 (205)
T 4aod_A           33 FEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTV-P---IAEIWTPDIFIFDSVGAPE---IFSDKL  105 (205)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEE-E---GGGSCCCCEEETTBSSCCE---ECSCCE
T ss_pred             EEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeec-c---HHhcCcCCEEEEcccccce---eecceE
Confidence            345569999999999999999999999999999998752   45666 3   7899999999999987653   345678


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ++|+++|+|.|..++.++++|.+       + +.|.+.+
T Consensus       106 ~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~f  143 (205)
T 4aod_A          106 ARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKS  143 (205)
T ss_dssp             EEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEE
T ss_pred             EEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEE
Confidence            89999999999999999999973       3 5566654

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=99.86  E-value=5.8e-22  Score=150.27  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=84.8

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcc--cccceeeec
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKH--AEFQYVTVP   79 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~--~~~~~~~~~   79 (160)
                      ..+.+.+|.+|+|++|+|++++|++|+|.|+||+|++.+    ..+.+ +   .++||+||++|+|+++  +.++..   
T Consensus        31 ~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~-~---~~~iW~PDi~~~N~~~~~~~~~~~---  103 (204)
T 3sq6_A           31 FSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSV-P---ISSLWVPDLAAYNAISKPEVLTPQ---  103 (204)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEE-E---GGGSCCCCEEETTBSSCCEECSCC---
T ss_pred             EEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEc-C---HHHCcCCCEEeEcccccCCccccc---
Confidence            345568999999999999999999999999999999874    45677 3   7999999999999999  777642   


Q ss_pred             cEEEEEeeCCceeEEEeEEEeecccc------ccccceeeC
Q psy10725         80 NVLVRINPDGEILYMLSIIENNTNKR------KQKRKALDL  114 (160)
Q Consensus        80 n~~~~i~~dG~v~ys~rl~l~~tc~~------~~~~~~l~l  114 (160)
                        .++|+++|+|.|..++.++++|.+      +.+.|.+.+
T Consensus       104 --~v~v~~~G~V~~~~~~~~~~~C~mdl~fPfD~Q~C~l~f  142 (204)
T 3sq6_A          104 --LALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKF  142 (204)
T ss_dssp             --EEEEETTSEEEECCEEEEEEECCCGGGSSSSCEEEEEEE
T ss_pred             --EEEEEeCCEEEEecCeeEEEeccccccCCCCCcEEEEEE
Confidence              788999999999999999999963      445566654

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.85  E-value=1e-21  Score=157.83  Aligned_cols=104  Identities=21%  Similarity=0.392  Sum_probs=87.4

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCCceEEcCCCcccCCCcccCcccccCcccccceeeeccEEEEE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRI   85 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~~i   85 (160)
                      +.+.+.+|.++||++|+|++++|++|+|+|+||+|++.+..+.. ...+.++||+||++|+|++++.    +.++..++|
T Consensus        24 ~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~-~~~~~~~IW~PDi~l~N~~~~~----~~~~~~~~v   98 (321)
T 3tlw_A           24 TGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENAR----DADVVDISV   98 (321)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCCSS-EECCGGGSCCCCEEESSBSSCC----EEEEEEEEE
T ss_pred             EEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCeee-ecccccCeEcCcEEeecccccc----cccceeEEE
Confidence            34556999999999999999999999999999999998633433 2345899999999999999987    356788999


Q ss_pred             eeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         86 NPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        86 ~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ++||+|.|..|+.++.+|.+       |.+.|.+.+
T Consensus        99 ~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f  134 (321)
T 3tlw_A           99 SPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYL  134 (321)
T ss_dssp             CTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEE
T ss_pred             eCCccEEEecceEEEEEEEeecccCCCCceeEeEEE
Confidence            99999999999999999974       456666654

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.84  E-value=2.6e-21  Score=158.34  Aligned_cols=103  Identities=17%  Similarity=0.336  Sum_probs=88.4

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      ..+.+.+|.+++|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....+| 
T Consensus        35 ~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v-~---~~~IW~PDi~~~N~~~~~~~~~~~~~-  109 (369)
T 2bg9_C           35 LSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL-R---PELIWIPDIVLQNNNDGQYNVAYFCN-  109 (369)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEE-C---GGGSCCCCEEETTTCSSCCBSSSSCC-
T ss_pred             EEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEe-c---HHhccCCcEecccccccccccccccc-
Confidence            345568999999999999999999999999999999873    46777 4   68999999999999999998776666 


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                       +.|++||+|.|..|+.++.+|.+       |.+.|.+.+
T Consensus       110 -~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f  148 (369)
T 2bg9_C          110 -VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKF  148 (369)
T ss_dssp             -EEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEE
T ss_pred             -EEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEE
Confidence             46899999999999999999974       456666654

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.84  E-value=2.4e-21  Score=158.59  Aligned_cols=102  Identities=21%  Similarity=0.347  Sum_probs=88.0

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+++|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|...  +..
T Consensus        34 ~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v-~---~~~IW~PDi~~~N~~~~~~~~~~--~~~  107 (370)
T 2bg9_A           34 GLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL-P---SDDVWLPDLVLYNNADGDFAIVH--MTK  107 (370)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEE-E---GGGSCCCCEEETTCCCSCEESCS--SCE
T ss_pred             EEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEe-c---hhhccCCcEeccccccccccccc--cce
Confidence            45568999999999999999999999999999999874    56777 3   79999999999999999987653  457


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ++|++||+|.|..|+.++.+|.+       |.+.|.+.+
T Consensus       108 ~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f  146 (370)
T 2bg9_A          108 LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKL  146 (370)
T ss_dssp             EEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEE
T ss_pred             EEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEE
Confidence            88999999999999999999984       456666654

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.84  E-value=2.7e-21  Score=158.28  Aligned_cols=102  Identities=18%  Similarity=0.336  Sum_probs=87.5

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+++|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....++  
T Consensus        34 ~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v-~---~~~IW~PDi~~~N~~~~~~~~~~~~~--  107 (370)
T 2bg9_B           34 GLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI-P---SDDVWQPDIVLMNNNDGSFEITLHVN--  107 (370)
T ss_dssp             ECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEE-E---SSSSCCCCEEESSCCCSCEESSSSCE--
T ss_pred             EEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEe-c---hhhccCCCccccccccccccccccce--
Confidence            44558999999999999999999999999999999873    46777 3   68999999999999999988765555  


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      +.|++||+|.|..|+.++.+|.+       |.+.|.+.+
T Consensus       108 ~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f  146 (370)
T 2bg9_B          108 VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVF  146 (370)
T ss_dssp             EEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEE
T ss_pred             EEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEE
Confidence            56899999999999999999974       456666654

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.84  E-value=3.1e-21  Score=157.93  Aligned_cols=116  Identities=17%  Similarity=0.299  Sum_probs=92.8

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      ..+.+.+|.+++|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....+|.
T Consensus        32 ~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v-~---~~~IW~PDi~~~N~~~~~~~~~~~~~~  107 (370)
T 2bg9_E           32 LKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRI-P---SELLWLPDVVLENNVDGQFEVAYYANV  107 (370)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCC-C---GGGSCCCCEEESSSCCSCCBSSSSCCC
T ss_pred             EEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEee-c---hhccCCCCEeeccccCCcccccccccE
Confidence            345568999999999999999999999999999999874    34566 3   689999999999999999987666664


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeCC----Chhhhccccccc
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN----DPNLVKAIWKPE  127 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~----~~~~~~~iW~Pd  127 (160)
                        .|++||+|.|+.|+.++.+|.+       |.+.|.+.++    +.+-+.-.|..+
T Consensus       108 --~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~  162 (370)
T 2bg9_E          108 --LVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAE  162 (370)
T ss_dssp             --EECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCS
T ss_pred             --EEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCC
Confidence              4899999999999999999974       4566666542    233344455443

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.83  E-value=5.5e-21  Score=160.49  Aligned_cols=102  Identities=21%  Similarity=0.360  Sum_probs=87.5

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.++||++|+|++++|++|+|+|+||+|++.+    +.+.+ +   .++||+||++|+|++++.+|.....  .
T Consensus        58 ~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~v-p---~~~IW~PDi~l~N~~d~~~~~~~~~--~  131 (461)
T 4aq5_A           58 GLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL-P---SDDVWLPDLVLYNNADGDFAIVHMT--K  131 (461)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEE-E---GGGSCCCCEEESSCCCSCCTTCSSC--E
T ss_pred             EEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEe-c---CCCEECCceeeeccccccccccccc--c
Confidence            45558999999999999999999999999999999874    56777 3   7899999999999999998865433  4


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ++|++||+|.|..|+.++++|..       |.+.|.+.+
T Consensus       132 v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f  170 (461)
T 4aq5_A          132 LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKL  170 (461)
T ss_dssp             EEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEE
T ss_pred             eEEcCCccEEEeccccccccccccccCCCCccCccCeEE
Confidence            78999999999999999999973       456666654

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.82  E-value=1.2e-20  Score=160.61  Aligned_cols=103  Identities=17%  Similarity=0.336  Sum_probs=89.0

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      +.+.+.+|.+|+|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....+|+
T Consensus        56 v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~v-p---~~~IW~PDi~l~N~~d~~~~~~~~~nv  131 (522)
T 4aq5_C           56 LSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL-R---PELIWIPDIVLQNNNDGQYNVAYFCNV  131 (522)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEE-C---GGGSCCCCEEETTTCSSCCBSCSSCCE
T ss_pred             EEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEee-c---cCCEECCcEeccccccCCccccccceE
Confidence            345668999999999999999999999999999999874    56777 3   789999999999999999987766664


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                        .|++||+|.|..|+.++++|.+       |.+.|.+.+
T Consensus       132 --~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f  169 (522)
T 4aq5_C          132 --LVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKF  169 (522)
T ss_dssp             --EECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEE
T ss_pred             --EEeCCccEEEEcccccccccccccCcCCCcCceEeEEE
Confidence              4899999999999999999974       556666654

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.82  E-value=8.4e-21  Score=160.37  Aligned_cols=103  Identities=17%  Similarity=0.319  Sum_probs=88.1

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV   81 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~   81 (160)
                      +.+.+.+|.+|+|++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....+|+
T Consensus        32 v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v-~---~~~IW~PDi~l~N~~d~~~~~~~~~nv  107 (488)
T 4aq5_E           32 LKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRI-P---SELLWLPDVVLENNVDGQFEVAYYANV  107 (488)
T ss_dssp             EEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCC-C---TTSSCCCCEECSSSCCSCCBSCSSSCC
T ss_pred             EEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEec-C---ccCEECCceehhccccccccccccccE
Confidence            345668999999999999999999999999999999874    44566 3   799999999999999999987766664


Q ss_pred             EEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                        .|+++|+|.|..|+.++++|.+       |.+.|.+.+
T Consensus       108 --~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f  145 (488)
T 4aq5_E          108 --LVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVF  145 (488)
T ss_dssp             --CBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEE
T ss_pred             --EEeCCceEEEecceeEEeecccccccCCCcCceeeEEe
Confidence              4899999999999999999973       456666654

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.82  E-value=2.3e-20  Score=150.02  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=86.9

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCCceEEcCCCcc-----cCCCcccCcccccCcccccceeeecc
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNL-----VKAIWKPEVYFPNAKHAEFQYVTVPN   80 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~~~i~l~~~~~-----~~~iW~PDi~~~N~~~~~~~~~~~~n   80 (160)
                      +.+.+.+|.++||++|+|++++|++|+|+|+||+|+.. +.+.+ ++..     .++||+||++|+|++++.+    .++
T Consensus        16 ~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~~~-~~l~l-~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~   89 (322)
T 3rqw_A           16 VSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGD-KPLIV-ENTQIERWINNGLWVPALEFINVVGSPD----TGN   89 (322)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCSTT-SCEEE-ETHHHHHHHHTTCCCCCEEETTBSSCCE----EEE
T ss_pred             EEEEEEeeccccccCcEEEEEEEEeeEEechhhCCCCC-Cceee-cchhhcccccccccCCcEEEEcccCccc----ccc
Confidence            34566999999999999999999999999999999543 45655 3333     8999999999999999987    467


Q ss_pred             EEEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         81 VLVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        81 ~~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      ..++|++||+|.|..|+.++.+|.+       |.+.|.+.+
T Consensus        90 ~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f  130 (322)
T 3rqw_A           90 KRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLEL  130 (322)
T ss_dssp             EEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEE
T ss_pred             eeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEE
Confidence            8899999999999999999999974       456666654

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.81  E-value=1.2e-20  Score=159.66  Aligned_cols=102  Identities=18%  Similarity=0.336  Sum_probs=87.7

Q ss_pred             eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725          7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL   82 (160)
Q Consensus         7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~   82 (160)
                      .+.+.+|.+|||++|+|++++|++|+|+|+||+|++.+    ..+.+ +   .++||+||++|+|++++.+|....+|  
T Consensus        58 ~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v-~---~~~IW~PDi~l~N~~d~~~~~~~~~n--  131 (493)
T 4aq5_B           58 GLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI-P---SDDVWQPDIVLMNNNDGSFEITLHVN--  131 (493)
T ss_dssp             ECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEE-C---SCSSCCCCCEESSCCCSCEESSSSSC--
T ss_pred             EEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEec-c---cccCccCcEEEecccccccccccccc--
Confidence            34558999999999999999999999999999999862    56777 3   78999999999999999988766666  


Q ss_pred             EEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725         83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDL  114 (160)
Q Consensus        83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l  114 (160)
                      +.|++||+|.|..|+.++++|.+       |.+.|.+.+
T Consensus       132 v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f  170 (493)
T 4aq5_B          132 VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVF  170 (493)
T ss_dssp             EEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEE
T ss_pred             eEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEE
Confidence            45899999999999999999973       556676654

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=98.79  E-value=1e-08  Score=82.82  Aligned_cols=69  Identities=30%  Similarity=0.525  Sum_probs=57.3

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..         ..+.+.+. +.  ++||+||++|.|++++.+|..+.+|.+++|++||+|.|
T Consensus        44 e~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~-~~--~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~  120 (347)
T 3rhw_A           44 VVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILT-VG--HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY  120 (347)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECC-TT--CCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEE
T ss_pred             ccceeEEEEEEEeeEEECcccCCCCccCCCceEEEec-ch--hceecCCEeeeccccccccccccccEEEEEeCCCCEEE
Confidence            35568899999999998732         23445552 32  89999999999999999999999999999999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       121 ~  121 (347)
T 3rhw_A          121 S  121 (347)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=98.66  E-value=2.3e-08  Score=76.49  Aligned_cols=65  Identities=12%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      ..+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..   |..++|++||+|.|
T Consensus        54 e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~----~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~  126 (228)
T 2wn9_A           54 SSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTS----AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMF  126 (228)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEE----GGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEE
T ss_pred             ccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEec----HHHccCCceecccccccccccc---cceEEEeCCeEEEE
Confidence            35678999999999999732         22445552    3799999999999999999874   89999999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       127 ~  127 (228)
T 2wn9_A          127 I  127 (228)
T ss_dssp             C
T ss_pred             e
Confidence            6

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=98.64  E-value=4.9e-08  Score=73.74  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+.  ..++|++||+|.|
T Consensus        46 e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~----~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~  119 (212)
T 2qc1_B           46 EVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIP----SEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITW  119 (212)
T ss_dssp             TTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEEC----GGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEE
T ss_pred             cCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcc----hhhccCCceeccccccccccccce--eeEEEECCeeEEE
Confidence            35578999999999999732         23455663    379999999999999999998765  5689999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       120 ~  120 (212)
T 2qc1_B          120 T  120 (212)
T ss_dssp             C
T ss_pred             E
Confidence            6

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=98.60  E-value=7.6e-08  Score=72.25  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=51.5

Q ss_pred             CCceeEEEeEEEeeccccccc--------cceeeCCChhhhcccccccceecCc-ccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQK--------RKALDLNDPNLVKAIWKPEVYFPNA-KHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~~--------~~~l~l~~~~~~~~iW~Pd~~f~n~-k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..-        ...+.+    ..++||+||++|.|+ +++.+|..    ..++|++||+|.|
T Consensus        41 e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~----~~~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~  112 (203)
T 2bj0_A           41 TEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSL----PVSKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIY  112 (203)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEE----EGGGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEE
T ss_pred             CCCCEEEEEEEEEeEEECcchhccCccCCceEEEE----chhhccCCCccccccccccccccc----eEEEEeCCcEEEE
Confidence            355789999999999988432        123333    147999999999999 99999987    6899999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       113 ~  113 (203)
T 2bj0_A          113 V  113 (203)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=98.54  E-value=9.1e-08  Score=76.42  Aligned_cols=67  Identities=21%  Similarity=0.245  Sum_probs=55.8

Q ss_pred             CCceeEEEeEEEeecccccc----ccceeeCCChhh-----hcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ----KRKALDLNDPNL-----VKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~----~~~~l~l~~~~~-----~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..    ..+.+.+ ++++     .++||+||++|.|++++.+    .+|..+++++||+|.|
T Consensus        28 e~~~~~t~~~~l~~~W~D~rL~~~~~~~l~l-~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~~i~~~G~V~~  102 (322)
T 3rqw_A           28 TLEQTYKVDGYIVAQWTGKPRKTPGDKPLIV-ENTQIERWINNGLWVPALEFINVVGSPD----TGNKRLMLFPDGRVIY  102 (322)
T ss_dssp             TTTTEEEEEEEEEEEEECSCCCCSTTSCEEE-ETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEEEECTTSEEEE
T ss_pred             ccCcEEEEEEEEeeEEechhhCCCCCCceee-cchhhcccccccccCCcEEEEcccCccc----ccceeEEEeCCcCEEE
Confidence            34568999999999999853    4466666 3555     7899999999999999998    6789999999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       103 ~  103 (322)
T 3rqw_A          103 N  103 (322)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=98.53  E-value=1.5e-07  Score=71.07  Aligned_cols=64  Identities=23%  Similarity=0.374  Sum_probs=51.6

Q ss_pred             CCceeEEEeEEEeecccccc--------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         88 DGEILYMLSIIENNTNKRKQ--------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~--------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      .-+..++..+.+++.|.|..        .. .+.++    .++||+||++|.|++++.  .++.+ ..++|++||+|.|+
T Consensus        44 e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~-~l~~~----~~~iW~PDi~~~N~~~~~--~~~~~-~~~~i~~~G~V~~~  115 (211)
T 1uw6_A           44 EITNEVDVVFWQQTTWSDRTLAWNSSHSPD-QVSVP----ISSLWVPDLAAYNAISKP--EVLTP-QLARVVSDGEVLYM  115 (211)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGCCCCTTSCS-EEEEE----GGGSCCCCEEETTBCSCC--EECSC-CEEEEETTSEEEEC
T ss_pred             hhCcEEEEEEEEEeEeECcccccChhhcCC-eEEcc----HHHccCCCEeeecccccc--cccee-eEEEEeCCceEEEe
Confidence            35678999999999999742        12 55552    379999999999999998  56655 89999999999986

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=98.52  E-value=3.9e-07  Score=69.78  Aligned_cols=64  Identities=11%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             ceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         90 EILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        90 ~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      +..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|...  +..++|++||+|.|+
T Consensus        56 ~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~----~~~IW~PDi~l~N~~~~~~~~~~--~~~v~v~~~G~V~~~  128 (230)
T 4afh_A           56 NSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEIS----PDEIWTPDIKLFNSVDLDMTLDR--TTQAIVFSNGTVLWI  128 (230)
T ss_dssp             EEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEEC----GGGSCCCCEEETTCSSSSCEECT--TSCEEEETTSEEEEC
T ss_pred             CcEEEEEEEEeeEEECccccCCcccCCCeeEEEec----cCCEECCcEEEEecccccccccc--cceEEEEcCCEEEEe
Confidence            778999999999998732         23455553    27999999999999999998743  345799999999986

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=98.47  E-value=1.1e-07  Score=71.32  Aligned_cols=66  Identities=23%  Similarity=0.403  Sum_probs=50.4

Q ss_pred             CceeEEEeEEEeecccccc-----ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         89 GEILYMLSIIENNTNKRKQ-----KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        89 G~v~ys~rl~l~~tc~~~~-----~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      -+..++..+.+++.|.|..     ....+.. .....++||+||++|.|++++..    .+|..++|++||+|.|+
T Consensus        33 ~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~-~~~~~~~IW~PDi~l~N~~~~~~----~~~~~v~v~~~G~V~~~  103 (201)
T 3igq_A           33 KAETFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENARD----ADVVDISVSPDGTVQYL  103 (201)
T ss_dssp             TSSEEEEEEEEEEEEECGGGCCCHHHHTCSC-EECCGGGSCCCCEEESSBSSSCE----EEEEEEEECTTCEEEEE
T ss_pred             cCCEEEEEEEEeeEEECCccCCCCcCCCEeE-ecccccCcCccCEEEEccccccc----ccceEEEEeCCCcEEEe
Confidence            4567899999999998742     1123333 23445899999999999988764    45889999999999986

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=98.46  E-value=2.6e-07  Score=75.26  Aligned_cols=66  Identities=15%  Similarity=0.355  Sum_probs=53.4

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      ..+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+.+|.  +|++||+|.|
T Consensus        47 e~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~----~~~IW~PDi~~~N~~~~~~~~~~~~~~--~i~~~G~V~~  120 (369)
T 2bg9_C           47 ETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLR----PELIWIPDIVLQNNNDGQYNVAYFCNV--LVRPNGYVTW  120 (369)
T ss_dssp             TTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEEC----GGGSCCCCEEETTTCSSCCBSSSSCCE--EECSSSEEEE
T ss_pred             ccccceEEEEEEeeeeECCCcccCccccCCeeEEEec----HHhccCCcEeccccccccccccccccE--EEECCccEEE
Confidence            45678999999999999742         22455552    379999999999999999999887774  6899999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       121 ~  121 (369)
T 2bg9_C          121 L  121 (369)
T ss_dssp             C
T ss_pred             e
Confidence            6

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=98.45  E-value=2.7e-07  Score=75.13  Aligned_cols=66  Identities=17%  Similarity=0.326  Sum_probs=53.3

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      ..+..++..+.+++.|.|..         ....+.++ .   ++||+||++|.|++++.+|..+..|.+  |++||+|.|
T Consensus        44 e~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~-~---~~IW~PDi~~~N~~~~~~~~~~~~~~~--v~~~G~V~~  117 (370)
T 2bg9_E           44 EKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP-S---ELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYW  117 (370)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCC-G---GGSCCCCEEESSSCCSCCBSSSSCCCE--ECSSSEEEE
T ss_pred             hcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeec-h---hccCCCCEeeccccCCcccccccccEE--EECCccEEE
Confidence            45678999999999999742         12445552 2   799999999999999999988887864  799999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       118 ~  118 (370)
T 2bg9_E          118 L  118 (370)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=98.45  E-value=2e-07  Score=74.34  Aligned_cols=67  Identities=24%  Similarity=0.438  Sum_probs=52.9

Q ss_pred             CCceeEEEeEEEeecccccc-----ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         88 DGEILYMLSIIENNTNKRKQ-----KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~-----~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      .-+..++..+.+++.|.|..     ....+.. .....++||+||++|.|++++.    +.+|..+++++||+|.|+
T Consensus        36 e~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~-~~~~~~~IW~PDi~l~N~~~~~----~~~~~~~~v~~~G~V~~~  107 (321)
T 3tlw_A           36 DCAETFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENAR----DADVVDISVSPDGTVQYL  107 (321)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGCCCSTTTCCSS-EECCGGGSCCCCEEESSBSSCC----EEEEEEEEECTTCEEEEE
T ss_pred             ccCcEEEEEEEEeeEEECcccCCCCccCCeee-ecccccCeEcCcEEeecccccc----cccceeEEEeCCccEEEe
Confidence            35568899999999999842     2222444 2445689999999999999998    567899999999999986

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=98.44  E-value=2.3e-07  Score=75.54  Aligned_cols=66  Identities=14%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      ..+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+  +..++|++||+|.|
T Consensus        45 e~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~----~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~  118 (370)
T 2bg9_A           45 EVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP----SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMW  118 (370)
T ss_dssp             TTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEE----GGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEE
T ss_pred             hhccceEEEEEEeeeeECCCccCChhhcCCccEEEec----hhhccCCcEeccccccccccccc--cceEEEECCeeEEE
Confidence            45678999999999999842         12344442    47999999999999999999764  56799999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       119 ~  119 (370)
T 2bg9_A          119 T  119 (370)
T ss_dssp             C
T ss_pred             e
Confidence            6

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=98.41  E-value=2.8e-07  Score=75.04  Aligned_cols=66  Identities=17%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      ..+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+..|  +++++||+|.|
T Consensus        45 e~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~----~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~  118 (370)
T 2bg9_B           45 EKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP----SDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSW  118 (370)
T ss_dssp             TTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEE----SSSSCCCCEEESSCCCSCEESSSSCE--EEEETTSEEEE
T ss_pred             ccccceEEEEEEeeeeECcccCcCccccCCeeEEEec----hhhccCCCccccccccccccccccce--EEEeCCceEEE
Confidence            45678999999999998732         22445552    27999999999999999999887776  46899999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       119 ~  119 (370)
T 2bg9_B          119 H  119 (370)
T ss_dssp             C
T ss_pred             E
Confidence            6

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=98.37  E-value=5.5e-07  Score=67.63  Aligned_cols=63  Identities=14%  Similarity=0.245  Sum_probs=49.7

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCccc--ceeeecccCceEEEEecCCcE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKH--AEFQYVTVPNVLVRINPDGEI  156 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~--s~~h~~~~~n~~~~i~~~G~v  156 (160)
                      .-+..++..+.+++.|.|..         ....+.++    .++||+||++|.|+++  +.+|..     .++|++||+|
T Consensus        43 e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~----~~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V  113 (204)
T 3sq6_A           43 EKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVP----ISSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHV  113 (204)
T ss_dssp             TTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEE----GGGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEE
T ss_pred             ccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcC----HHHCcCCCEEeEcccccCCccccc-----EEEEEeCCEE
Confidence            34568899999999999742         22444452    3799999999999999  888763     8899999999


Q ss_pred             EEe
Q psy10725        157 LYM  159 (160)
Q Consensus       157 ~~s  159 (160)
                      .|+
T Consensus       114 ~~~  116 (204)
T 3sq6_A          114 QYL  116 (204)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            986

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=98.22  E-value=1.7e-06  Score=73.58  Aligned_cols=65  Identities=17%  Similarity=0.379  Sum_probs=52.8

Q ss_pred             CceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         89 GEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        89 G~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      -+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+..|.+  |++||+|.|+
T Consensus        69 ~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp----~~~IW~PDi~l~N~~d~~~~~~~~~nv~--V~~dG~V~~~  142 (522)
T 4aq5_C           69 TDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLR----PELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPNGYVTWL  142 (522)
T ss_dssp             TTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEEC----GGGSCCCCEEETTTCSSCCBSCSSCCEE--ECSSSEEEEC
T ss_pred             cccEEEEEEEEeeeEeCcccCCCchhcCCceEEeec----cCCEECCcEeccccccCCccccccceEE--EeCCccEEEE
Confidence            4567999999999999732         23455553    2789999999999999999998888864  8999999986

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=98.21  E-value=1.7e-06  Score=65.11  Aligned_cols=65  Identities=18%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             CCceeEEEeEEEeecccccc--------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         88 DGEILYMLSIIENNTNKRKQ--------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~--------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      .-+..++..+.+++.|.|..        ....+.+    ..++||+||++|.|++++..   ...+..++|++||+|.|+
T Consensus        45 e~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v----~~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~  117 (205)
T 4aod_A           45 VENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTV----PIAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYV  117 (205)
T ss_dssp             TTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEE----EGGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEEC
T ss_pred             ccCCEEEEEEEEEEEEECCceeeCCcCCCccEeec----cHHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEe
Confidence            34567889999999998732        1233334    23689999999999987643   356778999999999986

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=98.20  E-value=1.1e-06  Score=73.58  Aligned_cols=66  Identities=14%  Similarity=0.292  Sum_probs=52.0

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|.....|  ++|++||+|.|
T Consensus        69 E~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp----~~~IW~PDi~l~N~~d~~~~~~~~~~--v~v~~dG~V~~  142 (461)
T 4aq5_A           69 EVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP----SDDVWLPDLVLYNNADGDFAIVHMTK--LLLDYTGKIMW  142 (461)
T ss_dssp             TTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEE----GGGSCCCCEEESSCCCSCCTTCSSCE--EEECSBCCEEE
T ss_pred             ccceEEEEEEEEeeeeECcccCCChhhcCCccEEEec----CCCEECCceeeecccccccccccccc--eEEcCCccEEE
Confidence            34568899999999999842         22455552    27899999999999999999765444  79999999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       143 ~  143 (461)
T 4aq5_A          143 T  143 (461)
T ss_dssp             C
T ss_pred             e
Confidence            6

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=98.17  E-value=1.5e-06  Score=73.35  Aligned_cols=65  Identities=17%  Similarity=0.310  Sum_probs=52.4

Q ss_pred             CceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         89 GEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        89 G~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      -+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+..|.+  |++||+|.|+
T Consensus        45 ~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~----~~~IW~PDi~l~N~~d~~~~~~~~~nv~--v~~~G~V~~~  118 (488)
T 4aq5_E           45 KEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP----SELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWL  118 (488)
T ss_dssp             TTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCC----TTSSCCCCEECSSSCCSCCBSCSSSCCC--BCTTSEEEEC
T ss_pred             ccceeeeeeeeeeEEECcccCcCchhcCCceEEecC----ccCEECCceehhccccccccccccccEE--EeCCceEEEe
Confidence            3457899999999998732         23455553    2789999999999999999998888865  8999999986

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=98.16  E-value=2.5e-06  Score=72.04  Aligned_cols=66  Identities=17%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725         88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY  158 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~  158 (160)
                      .-+..++..+.+++.|.|..         ....+.++    .++||+||++|.|++++.+|..+..|.  .|++||+|.|
T Consensus        69 E~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~----~~~IW~PDi~l~N~~d~~~~~~~~~nv--~v~~~G~V~~  142 (493)
T 4aq5_B           69 EKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP----SDDVWQPDIVLMNNNDGSFEITLHVNV--LVQHTGAVSW  142 (493)
T ss_dssp             TTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEEC----SCSSCCCCCEESSCCCSCEESSSSSCE--EECTTSEEEE
T ss_pred             ccceEEEEEEEeecceECcccCCChhhcCCeeEEecc----cccCccCcEEEecccccccccccccce--EEecCCCEEE
Confidence            34568899999999999732         23455553    268999999999999999998887775  5899999998


Q ss_pred             e
Q psy10725        159 M  159 (160)
Q Consensus       159 s  159 (160)
                      +
T Consensus       143 ~  143 (493)
T 4aq5_B          143 H  143 (493)
T ss_dssp             C
T ss_pred             e
Confidence            6

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=98.14  E-value=2.9e-06  Score=63.82  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             CCceeEEEeEEEeecccccc--------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         88 DGEILYMLSIIENNTNKRKQ--------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        88 dG~v~ys~rl~l~~tc~~~~--------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      .-+..++..+.+++.|.|..        ....+.++    .++||+||++|.|+++...+   ..+.+++|++||+|.|+
T Consensus        45 e~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~----~~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~  117 (205)
T 4aoe_A           45 VGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLP----SKYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFV  117 (205)
T ss_dssp             TTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE----GGGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEEC
T ss_pred             ccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeC----HHHhccccEEEecccccccc---ccceEEEEeCCcEEEEe
Confidence            34567888999999998732        22344442    26899999999998876543   45778999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	8e-06

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 21  EDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
            + +V  + +  W D+ L  +S + + D     +  ++W P++   NA         +  
Sbjct: 47  NEVDVVFWQQTTWSDRTLAWNS-SHSPDQVSVPI-SSLWVPDLAAYNAISKPE---VLTP 101

Query: 81  VLVRINPDGEILYMLSII 98
            L R+  DGE+LYM SI 
Sbjct: 102 QLARVVSDGEVLYMPSIR 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.81
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	97.77

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.81  E-value=1.9e-20  Score=140.55  Aligned_cols=102  Identities=19%  Similarity=0.328  Sum_probs=83.7

Q ss_pred             eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC--ceEEcCCCcccCCCcccCcccccCcccccceeeeccEEE
Q psy10725          6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT--KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLV   83 (160)
Q Consensus         6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~--~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~   83 (160)
                      +.+.|.+|.+++|++|.+++++|++|+|+|+||+|++.+  ..+.+ +   .++||+||++++|+++.....   .+..+
T Consensus        32 ~~l~l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~~~v-~---~~~iW~PDi~l~n~~~~~~~~---~~~~~  104 (208)
T d1uw6a_          32 VSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSV-P---ISSLWVPDLAAYNAISKPEVL---TPQLA  104 (208)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEE-E---GGGSCCCCEEETTBCSCCEEC---SCCEE
T ss_pred             EEEEEEeEeeecccCCEEEEEEEEEEEEECCccccccccCCceecc-c---hhccccccEEEEEEccccccc---cceEE
Confidence            345558999999999999999999999999999999885  45566 3   688999999999998765432   34567


Q ss_pred             EEeeCCceeEEEeEEEeecccc------ccccceeeC
Q psy10725         84 RINPDGEILYMLSIIENNTNKR------KQKRKALDL  114 (160)
Q Consensus        84 ~i~~dG~v~ys~rl~l~~tc~~------~~~~~~l~l  114 (160)
                      +|+++|+|.|..++.++.+|..      +.+.|.+.+
T Consensus       105 ~v~~~G~V~~~~~~~~~~~C~~~~~~f~d~Q~C~l~f  141 (208)
T d1uw6a_         105 RVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKI  141 (208)
T ss_dssp             EEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEE
T ss_pred             EEEeCCcEEEEecEEEEEeccccccCCcceEEEEEEE
Confidence            8999999999999999999973      235566654

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=97.77  E-value=1.6e-05  Score=58.00  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             CceeEEEeEEEeecccccc-------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725         89 GEILYMLSIIENNTNKRKQ-------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM  159 (160)
Q Consensus        89 G~v~ys~rl~l~~tc~~~~-------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s  159 (160)
                      -+..++..+.+++.|.|..       ....+.+    ..++||+||+++.|+++.....   .+..++|++||+|.|+
T Consensus        45 ~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~~~v----~~~~iW~PDi~l~n~~~~~~~~---~~~~~~v~~~G~V~~~  115 (208)
T d1uw6a_          45 ITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSV----PISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYM  115 (208)
T ss_dssp             TTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEE----EGGGSCCCCEEETTBCSCCEEC---SCCEEEEETTSEEEEC
T ss_pred             cCCEEEEEEEEEEEEECCccccccccCCceecc----chhccccccEEEEEEccccccc---cceEEEEEeCCcEEEE
Confidence            3557888899999999742       1122233    2368999999999988765433   3457889999999985