Psyllid ID: psy10732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS
Secondary Structure (PSIPRED)
cEEEEEEcccEEEccccEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
mkitvqfgggaellfgkvknhdldlptgekpwtIKGLIEWLKLnklterpelfvqgds
Flexible Loop (DISEMBL)
mkitvqfgggaELLFGKVKNHDLDLPTGEKPWTIKGLIEWLklnklterpelfvqgds
Low Complexity Region (SEG)
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS
Disordered region (IsUnstruct)
***TVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTE**********
Disordered Region (DISOPRED)
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQ***
Disordered Region (DISEMBL)
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS
Disordered Region (DISPRO)
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
A9YUB5	101	Ubiquitin-related modifie	N/A	N/A	1.0	0.574	0.586	2e-13
Q148F0	101	Ubiquitin-related modifie	yes	N/A	1.0	0.574	0.586	2e-13
Q9D2P4	101	Ubiquitin-related modifie	yes	N/A	1.0	0.574	0.586	3e-13
Q9BTM9	101	Ubiquitin-related modifie	yes	N/A	1.0	0.574	0.568	5e-13
Q5ZJU4	101	Ubiquitin-related modifie	yes	N/A	1.0	0.574	0.551	2e-12
Q7KU86	101	Ubiquitin-related modifie	yes	N/A	0.982	0.564	0.534	4e-11
B5DQK2	99	Ubiquitin-related modifie	yes	N/A	0.982	0.575	0.551	7e-11
B4GUT1	99	Ubiquitin-related modifie	N/A	N/A	0.982	0.575	0.551	7e-11
B4KYT0	104	Ubiquitin-related modifie	N/A	N/A	0.982	0.548	0.517	9e-11
B3NFA2	101	Ubiquitin-related modifie	N/A	N/A	0.982	0.564	0.534	1e-10

>sp|A9YUB5|URM1_CAPHI Ubiquitin-related modifier 1 homolog OS=Capra hircus GN=URM1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.
Capra hircus (taxid: 9925)

>sp|Q148F0|URM1_BOVIN Ubiquitin-related modifier 1 homolog OS=Bos taurus GN=URM1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Bos taurus (taxid: 9913)

>sp|Q9D2P4|URM1_MOUSE Ubiquitin-related modifier 1 homolog OS=Mus musculus GN=Urm1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Mus musculus (taxid: 10090)

>sp|Q9BTM9|URM1_HUMAN Ubiquitin-related modifier 1 homolog OS=Homo sapiens GN=URM1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  +K H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDS 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Homo sapiens (taxid: 9606)

>sp|Q5ZJU4|URM1_CHICK Ubiquitin-related modifier 1 homolog OS=Gallus gallus GN=URM1 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP+  +PW I+ L++W+K N L ERPELF+QG+S
Sbjct: 5  VSLQVEFGGGAELLFDGVKKHQVTLPSQPEPWDIRNLLKWIKQNLLKERPELFMQGES 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Gallus gallus (taxid: 9031)

>sp|Q7KU86|URM1_DROME Ubiquitin-related modifier 1 homolog OS=Drosophila melanogaster GN=CG33276 PE=3 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          +KI ++F  GAELLFG +K  +L+L  G++ WTI  L++W+  N LTERPELF+QGD+
Sbjct: 6  LKIILEFSAGAELLFGNIKRRELNL-DGKQKWTIANLLKWMHANILTERPELFLQGDT 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Drosophila melanogaster (taxid: 7227)

>sp|B5DQK2|URM1_DROPS Ubiquitin-related modifier 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA23607 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          +KI ++F  GAELLFG +K   L L  G K WTI  L++W+  N LTERPELF+QGD+
Sbjct: 4  LKIILEFSAGAELLFGNIKRRQLFLD-GHKKWTIANLLKWMHANILTERPELFLQGDT 60

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GUT1|URM1_DROPE Ubiquitin-related modifier 1 homolog OS=Drosophila persimilis GN=GL24132 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          +KI ++F  GAELLFG +K   L L  G K WTI  L++W+  N LTERPELF+QGD+
Sbjct: 4  LKIILEFSAGAELLFGNIKRRQLFLD-GHKKWTIANLLKWMHANILTERPELFLQGDT 60

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Drosophila persimilis (taxid: 7234)

>sp|B4KYT0|URM1_DROMO Ubiquitin-related modifier 1 homolog OS=Drosophila mojavensis GN=GI12450 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          +KI ++F  GAELLFG +K  ++ L  G + WTI  L++W+  N LTERPELF+QGD+
Sbjct: 9  LKIILEFSAGAELLFGNIKRREICLD-GTQKWTIANLLKWMHANILTERPELFIQGDT 65

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Drosophila mojavensis (taxid: 7230)

>sp|B3NFA2|URM1_DROER Ubiquitin-related modifier 1 homolog OS=Drosophila erecta GN=GG14947 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          +KI ++F  GAELLFG +K  +L L  G + WTI  L++W+  N LTERPELF+QGD+
Sbjct: 6  LKIILEFSAGAELLFGNIKRRELAL-DGNQKWTIANLLKWMHANILTERPELFLQGDT 62

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
417395665	101	Putative ubiquitin-related modifier 1 [D	1.0	0.574	0.603	3e-12
443696153	99	hypothetical protein CAPTEDRAFT_203305 [	1.0	0.585	0.568	4e-12
344271836	101	PREDICTED: ubiquitin-related modifier 1	1.0	0.574	0.586	7e-12
115496382	101	ubiquitin-related modifier 1 homolog [Bo	1.0	0.574	0.586	7e-12
355727862	101	ubiquitin related modifier 1-like protei	1.0	0.574	0.586	8e-12
73967924	101	PREDICTED: ubiquitin-related modifier 1	1.0	0.574	0.586	8e-12
296190928	101	PREDICTED: ubiquitin-related modifier 1	1.0	0.574	0.586	9e-12
149738016	101	PREDICTED: ubiquitin-related modifier 1	1.0	0.574	0.586	9e-12
149039152	63	similar to RIKEN cDNA 2900073H19 (predic	1.0	0.920	0.586	9e-12
312596916	101	ubiquitin-related modifier 1 homolog [Ra	1.0	0.574	0.586	9e-12

>gi|417395665|gb|JAA44882.1| Putative ubiquitin-related modifier 1 [Desmodus rotundus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  EKPW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQITLPGQEKPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443696153|gb|ELT96933.1| hypothetical protein CAPTEDRAFT_203305 [Capitella teleta]

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + ++F GGAELL  KVKNHD+ LP   K WT++GL++W+K N L ERPELF+QG S
Sbjct: 3  LNLKLEFSGGAELLVNKVKNHDITLPISSKLWTLRGLLDWIKDNLLAERPELFIQGGS 60

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|344271836|ref|XP_003407743.1| PREDICTED: ubiquitin-related modifier 1 homolog [Loxodonta africana]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFNGVKKHQVTLPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|115496382|ref|NP_001069197.1| ubiquitin-related modifier 1 homolog [Bos taurus] gi|300798264|ref|NP_001178049.1| ubiquitin related modifier 1-like [Bos taurus] gi|426222970|ref|XP_004005652.1| PREDICTED: ubiquitin-related modifier 1 homolog [Ovis aries] gi|115311679|sp|Q148F0.1|URM1_BOVIN RecName: Full=Ubiquitin-related modifier 1 homolog gi|229557928|sp|A9YUB5.1|URM1_CAPHI RecName: Full=Ubiquitin-related modifier 1 homolog gi|109939832|gb|AAI18392.1| Ubiquitin related modifier 1 homolog (S. cerevisiae) [Bos taurus] gi|162946584|gb|ABY21278.1| CG33276-PA-like protein [Capra hircus] gi|296482047|tpg|DAA24162.1| TPA: ubiquitin-related modifier 1 homolog [Bos taurus]

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355727862|gb|AES09334.1| ubiquitin related modifier 1-like protein [Mustela putorius furo]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWVIRDLLVWIKKNLLKERPELFIQGDS 62

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73967924|ref|XP_850726.1| PREDICTED: ubiquitin-related modifier 1 homolog isoform 1 [Canis lupus familiaris]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296190928|ref|XP_002743397.1| PREDICTED: ubiquitin-related modifier 1 homolog [Callithrix jacchus] gi|348569853|ref|XP_003470712.1| PREDICTED: ubiquitin-related modifier 1 homolog [Cavia porcellus] gi|403299722|ref|XP_003940625.1| PREDICTED: ubiquitin-related modifier 1 homolog [Saimiri boliviensis boliviensis] gi|431898871|gb|ELK07241.1| Ubiquitin-related modifier 1 like protein [Pteropus alecto] gi|432095372|gb|ELK26571.1| Ubiquitin-related modifier 1 like protein [Myotis davidii]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149738016|ref|XP_001500842.1| PREDICTED: ubiquitin-related modifier 1 homolog [Equus caballus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149039152|gb|EDL93372.1| similar to RIKEN cDNA 2900073H19 (predicted), isoform CRA_b [Rattus norvegicus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKTNLLKERPELFIQGDS 62

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312596916|ref|NP_001131034.2| ubiquitin-related modifier 1 homolog [Rattus norvegicus] gi|211853166|gb|AAI69094.1| Urm1 protein [Rattus norvegicus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKTNLLKERPELFIQGDS 62

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
UNIPROTKB|Q148F0	101	URM1 "Ubiquitin-related modifi	1.0	0.574	0.586	5.4e-15
UNIPROTKB|E2QUA4	101	URM1 "Uncharacterized protein"	1.0	0.574	0.586	5.4e-15
UNIPROTKB|A9YUB5	101	URM1 "Ubiquitin-related modifi	1.0	0.574	0.586	5.4e-15
RGD|1306599	101	Urm1 "ubiquitin related modifi	0.965	0.554	0.607	6.9e-15
MGI|MGI:1915455	101	Urm1 "ubiquitin related modifi	0.965	0.554	0.607	1.1e-14
UNIPROTKB|Q9BTM9	101	URM1 "Ubiquitin-related modifi	1.0	0.574	0.568	1.4e-14
UNIPROTKB|F1RR84	101	URM1 "Uncharacterized protein"	1.0	0.574	0.551	1.4e-14
UNIPROTKB|Q5ZJU4	101	URM1 "Ubiquitin-related modifi	1.0	0.574	0.551	3.8e-14
ZFIN|ZDB-GENE-091204-300	101	urm1 "ubiquitin related modifi	0.931	0.534	0.574	3.4e-13
FB|FBgn0053276	101	CG33276 [Drosophila melanogast	0.982	0.564	0.534	7.1e-13

UNIPROTKB|Q148F0 URM1 "Ubiquitin-related modifier 1 homolog" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     5 LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

GO:0034227 "tRNA thio-modification" evidence=ISS

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

UNIPROTKB|E2QUA4 URM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     5 LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A9YUB5 URM1 "Ubiquitin-related modifier 1 homolog" [Capra hircus (taxid:9925)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     5 LSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

RGD|1306599 Urm1 "ubiquitin related modifier 1" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 34/56 (60%), Positives = 42/56 (75%)

Query:     3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     7 VEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKTNLLKERPELFIQGDS 62

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

MGI|MGI:1915455 Urm1 "ubiquitin related modifier 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 34/56 (60%), Positives = 42/56 (75%)

Query:     3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     7 VKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

GO:0002098 "tRNA wobble uridine modification" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=ISO

UNIPROTKB|Q9BTM9 URM1 "Ubiquitin-related modifier 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  +K H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct:     5 LSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDS 62

GO:0005515 "protein binding" evidence=IPI

GO:0002098 "tRNA wobble uridine modification" evidence=IMP

GO:0005829 "cytosol" evidence=IC

GO:0034227 "tRNA thio-modification" evidence=IMP

GO:0016783 "sulfurtransferase activity" evidence=IDA

UNIPROTKB|F1RR84 URM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  VK H + LP  ++PW ++ L+ W+K N L ERPELF+QGDS
Sbjct:     5 LSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQGDS 62

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZJU4 URM1 "Ubiquitin-related modifier 1 homolog" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             + + V+FGGGAELLF  VK H + LP+  +PW I+ L++W+K N L ERPELF+QG+S
Sbjct:     5 VSLQVEFGGGAELLFDGVKKHQVTLPSQPEPWDIRNLLKWIKQNLLKERPELFMQGES 62

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

ZFIN|ZDB-GENE-091204-300 urm1 "ubiquitin related modifier 1" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query:     5 VQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             ++FGGGAELLF  VKNH + LP    PW +K L+ W++ N L ERPELF+QGD+
Sbjct:     9 LEFGGGAELLFDGVKNHHVTLPDQSNPWDMKQLLAWIRGNMLKERPELFMQGDT 62

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

FB|FBgn0053276 CG33276 [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query:     1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
             +KI ++F  GAELLFG +K  +L+L  G++ WTI  L++W+  N LTERPELF+QGD+
Sbjct:     6 LKIILEFSAGAELLFGNIKRRELNLD-GKQKWTIANLLKWMHANILTERPELFLQGDT 62

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BTM9	URM1_HUMAN	No assigned EC number	0.5689	1.0	0.5742	yes	N/A
Q9D2P4	URM1_MOUSE	No assigned EC number	0.5862	1.0	0.5742	yes	N/A
Q5ZJU4	URM1_CHICK	No assigned EC number	0.5517	1.0	0.5742	yes	N/A
Q7KU86	URM1_DROME	No assigned EC number	0.5344	0.9827	0.5643	yes	N/A
Q148F0	URM1_BOVIN	No assigned EC number	0.5862	1.0	0.5742	yes	N/A
B5DQK2	URM1_DROPS	No assigned EC number	0.5517	0.9827	0.5757	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	58
pfam09138	96	pfam09138, Urm1, Urm1 (Ubiquitin related modifier)	1e-21
cd01764	94	cd01764, Urm1, Urm1-like ubuitin domain	7e-16

>gnl|CDD|220123 pfam09138, Urm1, Urm1 (Ubiquitin related modifier)

 Score = 79.2 bits (196), Expect = 1e-21
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2  KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          KITV+F GG ELLF K K H + LP    P  +  LI+++K N + ERPE+F++GD+
Sbjct: 1  KITVEFLGGLELLFDKQKKHKVTLPIDSGPVNMGDLIDYIKKNLIKERPEVFLEGDT 57

Urm1 is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like pathway urmylation. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily. Length = 96

>gnl|CDD|176360 cd01764, Urm1, Urm1-like ubuitin domain

 Score = 64.6 bits (158), Expect = 7e-16
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 3  ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          I V+F GG ELLFG  K H + L  GEKP T+  L++++  N L ERP+LF++G S
Sbjct: 1  IKVEFLGGLELLFGNQKEHHVVLD-GEKPVTVGDLLDYVASNLLEERPDLFIEGGS 55

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
PF09138	96	Urm1: Urm1 (Ubiquitin related modifier); InterPro:	99.92
KOG4146|consensus	101		99.82
cd01764	94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	99.5
COG5131	96	URM1 Ubiquitin-like protein [Posttranslational mod	98.96
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	92.87
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	91.75
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	89.89
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	88.32

>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []

Probab=99.92  E-value=2.6e-26  Score=139.97  Aligned_cols=57  Identities=58%  Similarity=0.965  Sum_probs=49.8

Q ss_pred             eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCCC
Q psy10732          2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS   58 (58)
Q Consensus         2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~t   58 (58)
                      +|+|||+||||+||+|||+|++++|..++++||++||+|||+|++++|||+|+++++
T Consensus         1 ~i~vEF~GGlE~Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~   57 (96)
T PF09138_consen    1 KITVEFSGGLELLFGNQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGS   57 (96)
T ss_dssp             EEEEEEETTCGGGTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSS
T ss_pred             CEEEEEcCcHHHHhCCceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCe
Confidence            689999999999999999999999977778999999999999999999999998764

Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.

>KOG4146|consensus

Probab=99.82  E-value=2.2e-20  Score=114.38  Aligned_cols=58  Identities=34%  Similarity=0.554  Sum_probs=54.8

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCCC
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS   58 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~t   58 (58)
                      +.++|||.||+|++|++||.|.+++|...+|||+++||.||..|++++|+++|+++||
T Consensus         5 ~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~lFi~~gs   62 (101)
T KOG4146|consen    5 HEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDSLFIHHGS   62 (101)
T ss_pred             eeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcceEeeCCc
Confidence            5789999999999999999999999977789999999999999999999999998875

>cd01764 Urm1 Urm1-like ubuitin domain

Probab=99.50  E-value=3.9e-14  Score=85.14  Aligned_cols=54  Identities=46%  Similarity=0.812  Sum_probs=48.4

Q ss_pred             EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732          3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD   57 (58)
Q Consensus         3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~   57 (58)
                      |+|||+||||.+|+++++|.+++|.+ ++.||++||+||++++...|+++|.+++
T Consensus         1 i~v~f~ggl~~~~~~~~~~~~~~~~~-~~~tV~dll~~L~~~~~~~~~~lf~~~g   54 (94)
T cd01764           1 IKVEFLGGLELLFGNQKEHHVVLDGE-KPVTVGDLLDYVASNLLEERPDLFIEGG   54 (94)
T ss_pred             CEEEEechHHHHhCCceEEEEeccCC-CCCcHHHHHHHHHHhCchhhhhhEecCC
Confidence            58999999999999999999999954 4479999999999999888999998654

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.

>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1e-09  Score=66.96  Aligned_cols=55  Identities=18%  Similarity=0.340  Sum_probs=44.8

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccC--CCCCceecCCC
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLT--ERPELFVQGDS   58 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~--er~elFv~~~t   58 (58)
                      |.++|||.|||+++|+ ||.|++++.. .++++++.||++++. ++.  .|.++|++.++
T Consensus         1 ~~~KvellGgld~~fn-qR~~el~~~~-~e~~~vg~liD~~~~-~i~~p~~~sifie~g~   57 (96)
T COG5131           1 HEMKVELLGGLDVEFN-QREIELTREE-VEGSSVGTLIDALRY-FIYAPTRDSIFIEHGE   57 (96)
T ss_pred             CCceEEEeccchhhhc-ceeeEEEEcc-cCCcchhhHHHHHHH-HHhCCccceeeecCCC
Confidence            5689999999999999 9999999883 356999999999998 332  25578887653

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=92.87  E-value=0.31  Score=27.52  Aligned_cols=41  Identities=29%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|+|-|-|-+--.++ .+...+++|   ..+|+++|++++..+.
T Consensus         2 m~i~V~~fa~~re~~g-~~~~~~~~~---~~~tv~~L~~~l~~~~   42 (82)
T PLN02799          2 VEIKVLFFARARELTG-VSDMTLELP---AGSTTADCLAELVAKF   42 (82)
T ss_pred             eEEEEEehHHHHHHhC-CCeEEEECC---CCCcHHHHHHHHHHHC
Confidence            6899999998876776 445567777   2489999999997654

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=91.75  E-value=0.45  Score=26.19  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|.|-|.|--+++.. ..++++|.   ..|+++|++++.+..
T Consensus         1 i~v~~f~~l~~~~g~~-~~~~~~~~---~~tv~~ll~~l~~~~   39 (80)
T cd00754           1 VKVLYFARLREAAGKD-EEELELPE---GATVGELLDALEARY   39 (80)
T ss_pred             CEEEEeHHHHHHhCCc-eEEEECCC---CCcHHHHHHHHHHHC
Confidence            5788899988777653 46777773   479999999998764

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=89.89  E-value=0.85  Score=25.60  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|.|-|.+--.++. +.-++++|.+  ..|+++|+++|.+.+
T Consensus         1 v~V~~fa~lr~~~g~-~~~~~~~~~~--~~tv~~L~~~L~~~~   40 (80)
T TIGR01682         1 IKVLYFARLREQAGT-DEETLELPDE--STTVGELKEHLAKEG   40 (80)
T ss_pred             CEEEEeHHHHHHhCC-CeEEEECCCC--CcCHHHHHHHHHHhC
Confidence            467788888777774 3446778843  379999999998875

The C-terminal Gly-Gly of this model is critical to function.

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=88.32  E-value=0.97  Score=25.63  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|.|-|.+--+++... -++++|    .+|+++|++++.+++
T Consensus         1 v~V~~fa~lre~~g~~~-~~v~~~----~~tv~~l~~~l~~~~   38 (88)
T TIGR01687         1 VRVKYFATLRDITGKKS-EEIEIE----GKTVGDLLNELMARY   38 (88)
T ss_pred             CEEEEEhHHHHHhCCce-EEEEeC----CCCHHHHHHHHHHHC
Confidence            57888898888888543 345554    289999999998775

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	58
1xo3_A	101	Solution Structure Of Ubiquitin Like Protein From M		3e-14
1wgk_A	114	Solution Structure Of Mouse Hypothetical Protein 29		3e-14
2k9x_A	110	Solution Structure Of Urm1 From Trypanosoma Brucei		1e-06

>pdb|1XO3|A Chain A, Solution Structure Of Ubiquitin Like Protein From Mus Musculus Length = 101

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)
Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

>pdb|1WGK|A Chain A, Solution Structure Of Mouse Hypothetical Protein 2900073h19rik Length = 114

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)
Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 69

>pdb|2K9X|A Chain A, Solution Structure Of Urm1 From Trypanosoma Brucei Length = 110

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 2  KITVQFGGGAELLFGKVKNHDLD--LPTGEKPWTIKGLIEWLKLNKLTERPELFV 54
           ITVQF GG ELLF K  +  LD  +PTG     + GL++ LK N + ERP+L V
Sbjct: 6  HITVQFAGGCELLFAKQTSLQLDGVVPTGTN---LNGLVQLLKTNYVKERPDLLV 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	58
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	2e-20
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	8e-17
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	3e-16

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A Length = 114

 Score = 76.5 bits (188), Expect = 2e-20
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 69

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A Length = 99

 Score = 66.5 bits (162), Expect = 8e-17
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPE--LFVQGDS 58
          + + V+F GG + +FGK + H + +   E P T+  LI+ +    +    +  +F++ DS
Sbjct: 2  VNVKVEFLGGLDAIFGKQRVHKIKMD-KEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDS 60

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei} Length = 110

 Score = 65.7 bits (160), Expect = 3e-16
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD 57
            ITVQF GG ELLF K  +  LD         + GL++ LK N + ERP+L V   
Sbjct: 5  NHITVQFAGGCELLFAKQTSLQLDGVVPT-GTNLNGLVQLLKTNYVKERPDLLVDQT 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	58
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	99.57
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	99.44
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	98.43
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	95.36
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	94.45
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	94.17
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	93.31
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	85.71

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}

Probab=99.57  E-value=7.3e-16  Score=94.13  Aligned_cols=55  Identities=44%  Similarity=0.666  Sum_probs=48.1

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCC-CCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTG-EKPWTIKGLIEWLKLNKLTERPELFVQGD   57 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~-~~~~ti~~Li~~i~~nll~er~elFv~~~   57 (58)
                      |+|+|+|+||||.+|++  ++++++|.. +.++||++||+||++|+.++|+++|++++
T Consensus         5 m~v~V~f~g~l~~l~g~--~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g   60 (110)
T 2k9x_A            5 NHITVQFAGGCELLFAK--QTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQT   60 (110)
T ss_dssp             SCCEEEEESSCGGGTTS--CSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSS
T ss_pred             cEEEEEEEecHHHHhCC--eEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCC
Confidence            68999999999999993  679999943 34589999999999999999999998754

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=99.44  E-value=8.2e-14  Score=85.27  Aligned_cols=57  Identities=58%  Similarity=1.113  Sum_probs=50.6

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD   57 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~   57 (58)
                      |+|+|+|.|+|+.+|++++.|+|++|.+.+++||++||+||++++.+.|+++|.+++
T Consensus        12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g   68 (114)
T 1wgk_A           12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD   68 (114)
T ss_dssp             EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSS
T ss_pred             cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCC
Confidence            689999999999999999999999995334589999999999999999999998654

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=98.43  E-value=4.2e-07  Score=53.16  Aligned_cols=51  Identities=24%  Similarity=0.534  Sum_probs=42.2

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPEL   52 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~el   52 (58)
                      |+|+|.|.|++.-++++++.+++++|.. ...|+++|++||++++-..++++
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~~-~~~Tv~~L~~~L~~~~~~~~~~l   52 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDKE-DPVTVGDLIDHIVSTMINNPNDV   52 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECSC-SCCBHHHHHHHHHHHTCSSGGGH
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCCC-CCCcHHHHHHHHHHHCchhhHHH
Confidence            6899999999999998888889998831 23799999999999986555566

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=95.36  E-value=0.03  Score=31.50  Aligned_cols=39  Identities=23%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|+|.|-|.|--.+++++.  ++.+    ..|+++|+++|.+++
T Consensus         1 M~v~V~~fa~lr~~~g~~~~--~~~~----~~Tv~~ll~~L~~~~   39 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKS--VSAS----GDTLGAVISDLEANY   39 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSE--EEEC----CSBHHHHHHHHHHHS
T ss_pred             CEEEEEEeHHHHHHhCCCeE--EecC----CCCHHHHHHHHHHHC
Confidence            78999999999999987553  5532    279999999999775

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=94.45  E-value=0.11  Score=29.77  Aligned_cols=38  Identities=11%  Similarity=0.016  Sum_probs=30.6

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|+|.|-|.|--.++. +.++++    +  .|+++|+.++..+.
T Consensus         4 m~v~V~~fa~lr~~~g~-~~~~l~----~--~tv~~ll~~L~~~~   41 (99)
T 2l52_A            4 AEVKVKLFANLREAAGT-PELPLS----G--EKVIDVLLSLTDKY   41 (99)
T ss_dssp             CEEEEEECTHHHHHHSS-SEEEEE----C--SSHHHHHHHHHHHC
T ss_pred             eEEEEEEeHHHHHHhCC-CeEEEe----C--CcHHHHHHHHHHHC
Confidence            68999999999988874 444544    2  69999999998875

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=94.17  E-value=0.1  Score=28.94  Aligned_cols=40  Identities=10%  Similarity=0.066  Sum_probs=32.0

Q ss_pred             eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      +|+|.|-|.|--.++. +..++++|.   ..|+++|+++|....
T Consensus         2 ~i~V~~fa~lre~~g~-~~~~~~~~~---~~Tv~~ll~~L~~~~   41 (89)
T 3po0_A            2 SMEWKLFADLAEVAGS-RTVRVDVDG---DATVGDALDALVGAH   41 (89)
T ss_dssp             EEEEEECHHHHHHHTC-SEEEEECCT---TCBHHHHHHHHHHHC
T ss_pred             EEEEEEcHHHHHHhCC-CeEEEECCC---CCcHHHHHHHHHHHC
Confidence            5889999999888884 345678873   379999999998765

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=93.31  E-value=0.17  Score=28.77  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|+|.|-|.|--..+.. ..++++|.   ..|+++|+.++..+.
T Consensus        10 ~~v~V~~FA~lre~~g~~-~~~~e~~~---~~Tv~~Ll~~L~~~~   50 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVD-EEEIELPE---GARVRDLIEEIKKRH   50 (98)
T ss_dssp             EEEEEEECTHHHHHHSSS-EEEEEECT---TCBHHHHHHHHHHHC
T ss_pred             EEEEEEEhHHHHHHhCCC-eEEEECCC---CCCHHHHHHHHHhHC
Confidence            679999999998777743 23567762   379999999998874

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=85.71  E-value=1.8  Score=23.45  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732          3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK   45 (58)
Q Consensus         3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl   45 (58)
                      |+|.|-|.|--.++. +..  +++.   ..|+++|++++..+.
T Consensus         2 v~V~~fa~lr~~~g~-~~~--~~~~---~~tv~~ll~~l~~~~   38 (90)
T 2g1e_A            2 VTVRYYATLRPITKK-KEE--TFNG---ISKISELLERLKVEY   38 (90)
T ss_dssp             EEEEECSTHHHHHTC-SEE--EESS---CCBHHHHHHHHHHHS
T ss_pred             EEEEEeHHHHHHcCC-CEE--EcCC---CCcHHHHHHHHHHHC
Confidence            789999999888873 343  4552   379999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	58
d1xo3a_	101	d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus	8e-17

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (159), Expect = 8e-17
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	58
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	99.69
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	96.12
d1j20a1	165	Argininosuccinate synthetase, N-terminal domain {T	80.04

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.8e-17  Score=96.64  Aligned_cols=57  Identities=58%  Similarity=1.113  Sum_probs=52.1

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD   57 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~   57 (58)
                      |+|+|||+|||+.+|+++|+|++++|......||++||.||++++-..++++|.+++
T Consensus         5 m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~   61 (101)
T d1xo3a_           5 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD   61 (101)
T ss_dssp             CEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTT
T ss_pred             eEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCc
Confidence            789999999999999999999999996555699999999999999999999987654

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.12  E-value=0.0051  Score=33.05  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=33.1

Q ss_pred             CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc
Q psy10732          1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL   46 (58)
Q Consensus         1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll   46 (58)
                      |+|+|.|-|-+==.++. ...++++|.   ..|+++|+.+|.+..=
T Consensus         2 mkI~v~~Fa~lre~~G~-~~~~~~~~~---~~Tv~~l~~~L~~~~~   43 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGV-DEEEIELPE---GARVRDLIEEIKKRHE   43 (88)
T ss_dssp             EEEEEEECTHHHHHHSS-SEEEEEECT---TCBHHHHHHHHHHHCG
T ss_pred             eEEEEEEhHHHHHHhCC-CeEEEECCC---CCCHHHHHHHHHHHCh
Confidence            78999999999666654 455788883   3799999999988753

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.04  E-value=0.37  Score=25.51  Aligned_cols=13  Identities=38%  Similarity=0.820  Sum_probs=12.1

Q ss_pred             CeEEEEeccchhh
Q psy10732          1 MKITVQFGGGAEL   13 (58)
Q Consensus         1 ~~i~vEF~GGlEl   13 (58)
                      |+|-|-+|||.|.
T Consensus         1 mKvlvA~SGG~DS   13 (165)
T d1j20a1           1 MKIVLAYSGGLDT   13 (165)
T ss_dssp             CEEEEECCSSHHH
T ss_pred             CEEEEEEeCHHHH
Confidence            7899999999996