Psyllid ID: psy10770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MFLIEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMKPLRDS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHEEEHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mfliehsfsrskhnyltftpQTLAHTLqgmgqdegmyQQYIPLALHIAEdhflshesKDVQLLIACCIADvlrvyapeapykdpdqVKTIFLFLIKQLnglkdpkdpafKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVndehsgkvKSFMLDVLcplitesdilSHELLDIILMNivdpqktqRKNAYLLAKELIVKTNDTLEPYIQNLTRLAnavfpnlgdiaplGAMEIFMGamkplrds
Flexible Loop (DISEMBL)
MFLIEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLnglkdpkdPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMKPLRDS
Low Complexity Region (SEG)
MFLIEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMKPLRDS
Disordered region (IsUnstruct)
************HNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMG********
Disordered Region (DISOPRED)
*******************PQTLA******************LALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDP****RKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFM**M******
Disordered Region (DISEMBL)
MFLIEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMKPLRDS
Disordered Region (DISPRO)
*************NYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLIEHSFSRSKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAPLGAMEIFMGAMKPLRDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q498H0	1448	Sister chromatid cohesion	N/A	N/A	0.778	0.136	0.520	5e-57
Q5F3U9	1412	Sister chromatid cohesion	yes	N/A	0.845	0.151	0.463	8e-57
Q6TRW4	1447	Sister chromatid cohesion	yes	N/A	0.845	0.147	0.463	8e-57
Q9NTI5	1447	Sister chromatid cohesion	yes	N/A	0.845	0.147	0.463	9e-57
Q4VA53	1446	Sister chromatid cohesion	yes	N/A	0.845	0.147	0.463	1e-56
Q5U241	1464	Sister chromatid cohesion	N/A	N/A	0.778	0.134	0.515	1e-56
Q5F3V3	1330	Sister chromatid cohesion	no	N/A	0.778	0.148	0.525	2e-55
Q4KLU7	1323	Sister chromatid cohesion	N/A	N/A	0.778	0.148	0.515	1e-54
Q6A026	1332	Sister chromatid cohesion	no	N/A	0.778	0.147	0.515	4e-54
A4L9P7	1333	Sister chromatid cohesion	no	N/A	0.778	0.147	0.515	4e-54

>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1

 Score =  221 bits (562), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 140/198 (70%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   +QY+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 38  VVKTFMDMDQDSEEEKEQYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPY 97

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
             PD++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L
Sbjct: 98  TSPDKLKDIFMFISRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQL 157

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           +  +F ++N+ H+ KV   M+D++  ++ E D +S ELLD +L+N+V   K   K AY L
Sbjct: 158 YRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDL 217

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T   +EPYI N
Sbjct: 218 AKALLKRTAQAIEPYITN 235

Plays a role in androgen-induced proliferative arrest (By similarity). Required for maintenance of sister chromatid cohesion during mitosis.
Xenopus laevis (taxid: 8355)

>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3

 Score =  220 bits (560), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)

Query: 6   HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
           HS +R+    +T+ P                  + +  T   M QD E   + Y+ LALH
Sbjct: 3   HSKTRANDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62

Query: 47  IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
           +A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  PD++K IF+F+ +QL GL+D K 
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
           P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  +F ++N+ H+ KV   M+D++ 
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
            +I E D +S ELLD +L+N+V   K   K AY LAK L+ +T   +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235

Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.

Gallus gallus (taxid: 9031)

>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2

 Score =  220 bits (560), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)

Query: 6   HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
           HS +R+    +T+ P                  + +  T   M QD E   + Y+ LALH
Sbjct: 3   HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62

Query: 47  IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
           +A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  PD++K IF+F+ +QL GL+D K 
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
           P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  +F ++N+ H+ KV   M+D++ 
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
            +I E D +S ELLD +L+N+V   K   K AY LAK L+ +T   +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235

Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1

 Score =  220 bits (560), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)

Query: 6   HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
           HS +R+    +T+ P                  + +  T   M QD E   + Y+ LALH
Sbjct: 3   HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62

Query: 47  IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
           +A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  PD++K IF+F+ +QL GL+D K 
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
           P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  +F ++N+ H+ KV   M+D++ 
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
            +I E D +S ELLD +L+N+V   K   K AY LAK L+ +T   +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235

Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells.

Homo sapiens (taxid: 9606)

>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 19/233 (8%)

Query: 6   HSFSRSKHNYLTFTP------------------QTLAHTLQGMGQD-EGMYQQYIPLALH 46
           HS +R+    +T+ P                  + +  T   M QD E   + Y+ LALH
Sbjct: 3   HSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALH 62

Query: 47  IAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKD 106
           +A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  PD++K IF+F+ +QL GL+D K 
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 107 PAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLC 166
           P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  +F ++N+ H+ KV   M+D++ 
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 167 PLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQN 219
            +I E D +S ELLD +L+N+V   K   K AY LAK L+ +T   +EPYI N
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITN 235

Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells.

Mus musculus (taxid: 10090)

>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 139/198 (70%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   +QY+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 38  VVKTFMDMDQDSEEEKEQYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPY 97

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
             PD++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELED  EIF  L
Sbjct: 98  TSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQL 157

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           +  +F ++N+ H+ KV   M+D++  ++ E D +S ELLD +L+N+V   K   K AY L
Sbjct: 158 YRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDL 217

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T   +EPYI N
Sbjct: 218 AKALLKRTAQAIEPYITN 235

Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.

Xenopus laevis (taxid: 8355)

>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 141/198 (71%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 42  VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 101

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
              D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED  EIF  L
Sbjct: 102 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 161

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           F  +F ++N+ H+ KV+  MLD++  +I E D ++ ELLD IL+N++   K   K A+ L
Sbjct: 162 FRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQAFDL 221

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T  T+EP I N
Sbjct: 222 AKVLLKRTVQTIEPCIAN 239

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Gallus gallus (taxid: 9031)

>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 139/198 (70%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   QQY+PLALH++ D FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 40  VVKTFMDMDQDSEEEKQQYLPLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 99

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
              D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED  EIF  L
Sbjct: 100 TSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 159

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           F  +F ++N+ H+ KV+  MLD++  +  E D ++ E LD IL+N++   K   K A+ L
Sbjct: 160 FKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAHKNLNKQAFDL 219

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T  T+EP I N
Sbjct: 220 AKVLLKRTAQTIEPCIAN 237

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3

 Score =  211 bits (537), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 47  VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 106

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
              D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED  EIF  L
Sbjct: 107 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 166

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           F  +F ++N+ H+ KV+  MLD++  +I E D ++ ELLD IL+N++   K   K ++ L
Sbjct: 167 FRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDL 226

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T  T+E  I N
Sbjct: 227 AKVLLKRTVQTIEACIAN 244

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Mus musculus (taxid: 10090)

>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1

 Score =  211 bits (537), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 1/198 (0%)

Query: 23  LAHTLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPY 81
           +  T   M QD E   QQY+PLALH+A + FL + +KDV+LL+ACC+AD+ R+YAPEAPY
Sbjct: 47  VVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPY 106

Query: 82  KDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCAL 141
              D++K IFLF+ +QL GL+D K P F RYFYLLENLA+VKS+N+CFELED  EIF  L
Sbjct: 107 TSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQL 166

Query: 142 FSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLL 201
           F  +F ++N+ H+ KV+  MLD++  +I E D ++ ELLD IL+N++   K   K ++ L
Sbjct: 167 FRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDL 226

Query: 202 AKELIVKTNDTLEPYIQN 219
           AK L+ +T  T+E  I N
Sbjct: 227 AKVLLKRTVQTIEACIAN 244

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
307214988	1199	Sister chromatid cohesion protein PDS5-l	0.782	0.165	0.904	1e-102
332021295	1197	Sister chromatid cohesion protein PDS5-l	0.782	0.165	0.904	1e-102
383864025	1210	PREDICTED: sister chromatid cohesion pro	0.782	0.163	0.898	1e-102
340717140	1210	PREDICTED: sister chromatid cohesion pro	0.782	0.163	0.898	1e-102
383864027	1198	PREDICTED: sister chromatid cohesion pro	0.782	0.165	0.898	1e-102
328778597	1210	PREDICTED: sister chromatid cohesion pro	0.782	0.163	0.898	1e-102
380015096	1198	PREDICTED: LOW QUALITY PROTEIN: sister c	0.782	0.165	0.898	1e-102
350416424	1198	PREDICTED: sister chromatid cohesion pro	0.782	0.165	0.898	1e-102
322795063	1218	hypothetical protein SINV_15243 [Solenop	0.782	0.162	0.898	1e-101
345492144	1211	PREDICTED: sister chromatid cohesion pro	0.786	0.164	0.889	3e-99

>gi|307214988|gb|EFN89833.1| Sister chromatid cohesion protein PDS5-like protein B-B [Harpegnathos saltator]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD DQVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDADQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021295|gb|EGI61674.1| Sister chromatid cohesion protein PDS5-like protein B-A [Acromyrmex echinatior]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD DQVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDADQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P K+Q+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKSQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKELI+K +DTLEPYIQ
Sbjct: 207 LAKELIIKCSDTLEPYIQ 224

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864025|ref|XP_003707480.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 1 [Megachile rotundata]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717140|ref|XP_003397045.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like [Bombus terrestris] gi|350416427|ref|XP_003490946.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 2 [Bombus impatiens]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864027|ref|XP_003707481.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 2 [Megachile rotundata]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778597|ref|XP_623860.2| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like [Apis mellifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015096|ref|XP_003691547.1| PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog B-A-like [Apis florea]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416424|ref|XP_003490945.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 1 [Bombus impatiens]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 191/198 (96%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD +QVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDAEQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMF+IVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAYL
Sbjct: 147 LFSLMFRIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYL 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAKEL++K +DTLEPYIQ
Sbjct: 207 LAKELVIKCSDTLEPYIQ 224

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795063|gb|EFZ17911.1| hypothetical protein SINV_15243 [Solenopsis invicta]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 190/198 (95%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AE+HFL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEEHFLMHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD DQVKTIFLFLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDADQVKTIFLFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI+S+ELLDIILMNIV+P KTQ+KNAY 
Sbjct: 147 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIVSNELLDIILMNIVEPNKTQKKNAYT 206

Query: 201 LAKELIVKTNDTLEPYIQ 218
           LAK+L++K +DTLEPYIQ
Sbjct: 207 LAKDLVIKCSDTLEPYIQ 224

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492144|ref|XP_003426788.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A isoform 2 [Nasonia vitripennis]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 186/199 (93%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
           +TLAHTLQ MGQDEGMYQQYIPLALH+AED FL H+SKDVQLLIACCIADVLRVYAPEAP
Sbjct: 27  KTLAHTLQAMGQDEGMYQQYIPLALHLAEDCFLQHQSKDVQLLIACCIADVLRVYAPEAP 86

Query: 81  YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
           YKD DQVKTIF FLIKQL GLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED QEIFCA
Sbjct: 87  YKDADQVKTIFFFLIKQLAGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCA 146

Query: 141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
           LFSLMFKIVNDEHS KVKSFMLDVLCPLITESDI+S+ELLDIIL+NIV+P KTQRKNAY 
Sbjct: 147 LFSLMFKIVNDEHSSKVKSFMLDVLCPLITESDIVSNELLDIILINIVEPNKTQRKNAYA 206

Query: 201 LAKELIVKTNDTLEPYIQN 219
           LAKEL+VK +DTLE YIQ 
Sbjct: 207 LAKELVVKCSDTLEGYIQG 225

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
FB|FBgn0260012	1218	pds5 [Drosophila melanogaster	0.782	0.162	0.696	3.5e-70
UNIPROTKB|Q498H0	1448	pds5b-a "Sister chromatid cohe	0.766	0.133	0.528	5.4e-53
UNIPROTKB|Q5F3U9	1412	PDS5B "Sister chromatid cohesi	0.766	0.137	0.528	1.4e-52
UNIPROTKB|F1P3B8	1446	PDS5B "Sister chromatid cohesi	0.766	0.134	0.528	1.4e-52
MGI|MGI:2140945	1446	Pds5b "PDS5, regulator of cohe	0.766	0.134	0.528	1.4e-52
UNIPROTKB|F1Q0Z0	1447	PDS5B "Uncharacterized protein	0.766	0.134	0.528	1.4e-52
UNIPROTKB|Q9NTI5	1447	PDS5B "Sister chromatid cohesi	0.766	0.134	0.528	1.4e-52
RGD|1310838	1447	Pds5b "PDS5, regulator of cohe	0.766	0.134	0.528	1.4e-52
UNIPROTKB|Q6TRW4	1447	Pds5b "Sister chromatid cohesi	0.766	0.134	0.528	1.4e-52
UNIPROTKB|F1N7G8	1449	PDS5B "Uncharacterized protein	0.766	0.133	0.528	1.5e-52

FB|FBgn0260012 pds5 [Drosophila melanogaster (taxid:7227)]

 Score = 719 (258.2 bits), Expect = 3.5e-70, P = 3.5e-70
 Identities = 138/198 (69%), Positives = 165/198 (83%)

Query:    21 QTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAP 80
             +TLA+ LQ M QD+ +YQQYIPLALH+ +D F+ H S+DVQLLIACC+ADVLRVYAPEAP
Sbjct:    27 KTLANVLQTMDQDDNLYQQYIPLALHLLDDFFMQHPSRDVQLLIACCVADVLRVYAPEAP 86

Query:    81 YKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCA 140
             YK+ DQ+KTIF F IKQL+GLKDP+DP+FKRYFYLLENLA+VKSFNMCFELED QEIF  
Sbjct:    87 YKEQDQIKTIFKFFIKQLHGLKDPRDPSFKRYFYLLENLAFVKSFNMCFELEDCQEIFQD 146

Query:   141 LFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYL 200
             LFS +FKIVND+HS KV +F LDVL PLITE+D LS ELLD+IL+NIV+P K+  K A  
Sbjct:   147 LFSTIFKIVNDQHSVKVTNFFLDVLSPLITEADNLSVELLDLILINIVEPYKSNNKFACQ 206

Query:   201 LAKELIVKTNDTLEPYIQ 218
             L ++L+ KT D LE  I+
Sbjct:   207 LTEQLLTKTGDALESTIK 224

GO:0007059 "chromosome segregation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0030717 "karyosome formation" evidence=IMP

GO:0005700 "polytene chromosome" evidence=IDA

GO:0008278 "cohesin complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q498H0 pds5b-a "Sister chromatid cohesion protein PDS5 homolog B-A" [Xenopus laevis (taxid:8355)]

 Score = 561 (202.5 bits), Expect = 5.4e-53, P = 5.4e-53
 Identities = 103/195 (52%), Positives = 139/195 (71%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   +QY+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKEQYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFISRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  ++ E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0007064 "mitotic sister chromatid cohesion" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0051301 "cell division" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0000785 "chromatin" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0000785 "chromatin" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1Q0Z0 PDS5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q9NTI5 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Homo sapiens (taxid:9606)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0003677 "DNA binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0000785 "chromatin" evidence=IDA

GO:0005524 "ATP binding" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1310838 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0000785 "chromatin" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISO;ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IDA

GO:0042127 "regulation of cell proliferation" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q6TRW4 Pds5b "Sister chromatid cohesion protein PDS5 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 557 (201.1 bits), Expect = 1.5e-52, P = 1.5e-52
 Identities = 103/195 (52%), Positives = 138/195 (70%)

Query:    26 TLQGMGQD-EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDP 84
             T   M QD E   + Y+ LALH+A D FL H  KDV+LL+ACC+AD+ R+YAPEAPY  P
Sbjct:    41 TFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSP 100

Query:    85 DQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSL 144
             D++K IF+F+ +QL GL+D K P F RYFYLLEN+A+VKS+N+CFELEDS EIF  L+  
Sbjct:   101 DKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT 160

Query:   145 MFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKE 204
             +F ++N+ H+ KV   M+D++  +I E D +S ELLD +L+N+V   K   K AY LAK 
Sbjct:   161 LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKA 220

Query:   205 LIVKTNDTLEPYIQN 219
             L+ +T   +EPYI N
Sbjct:   221 LLKRTAQAIEPYITN 235

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG1525|consensus	1266		100.0
KOG1525|consensus	1266		99.4
KOG1992|consensus	960		90.16
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.93
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	80.68

>KOG1525|consensus

Probab=100.00  E-value=5.1e-53  Score=442.02  Aligned_cols=214  Identities=43%  Similarity=0.689  Sum_probs=209.2

Q ss_pred             CChhHHHHhHHHHHHHHhhcCCCchhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHH
Q psy10770         11 SKHNYLTFTPQTLAHTLQGMGQDEGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTI   90 (253)
Q Consensus        11 ~~~~eLlkrLk~L~~~L~~~dQ~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdI   90 (253)
                      =+++||++||++|+++|.+++|+..+.+++.|++.||+++.||+|+|+|||+|||||++||||||||||||+| .|||||
T Consensus        17 ~s~~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~-~~lkdI   95 (1266)
T KOG1525|consen   17 ISKDELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTD-EQLKDI   95 (1266)
T ss_pred             ccHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcH-HHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999999999999999999998 599999


Q ss_pred             HHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhc
Q psy10770         91 FLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLIT  170 (253)
Q Consensus        91 F~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIe  170 (253)
                      |++|++||.||.|+.||||.||+||||+||+|| ++++.+++||++++.++|++||+++|.+|+++|.+ |.+||+.+|.
T Consensus        96 f~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~  173 (1266)
T KOG1525|consen   96 FQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLIT  173 (1266)
T ss_pred             HHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999999999999 88889999999999999999999999999999999 9999999999


Q ss_pred             cccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhccc
Q psy10770        171 ESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAV  227 (253)
Q Consensus       171 E~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~  227 (253)
                      |.+.||.++|++||.++++++++..+.|++||..++++|++++++.+++||+..+.-
T Consensus       174 e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~  230 (1266)
T KOG1525|consen  174 EEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTE  230 (1266)
T ss_pred             hhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999988543

>KOG1525|consensus

Probab=99.40  E-value=2.5e-12  Score=136.73  Aligned_cols=209  Identities=18%  Similarity=0.204  Sum_probs=189.4

Q ss_pred             HHHHhhcCCC--chhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHh--hcCCCCCCCChHHHHHHHHHHHHHhc
Q psy10770         24 AHTLQGMGQD--EGMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLR--VYAPEAPYKDPDQVKTIFLFLIKQLN   99 (253)
Q Consensus        24 ~~~L~~~dQ~--~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlR--I~APdaPy~d~~qLkdIF~l~v~~l~   99 (253)
                      .-.|..+.|+  -++.+++.++.+.++.=....|++-++..-...||.+.+|  |.+|..||++ +.++.||..|+..++
T Consensus       445 E~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ls~~vr~~I~~~k~~~~d-~~~k~i~~~i~~i~~  523 (1266)
T KOG1525|consen  445 ERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQSRLSEEVRDYITLSKTPNTD-DSMKKIFSKIVKISE  523 (1266)
T ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHHHHHhccccCCCcc-HhHHHHHHHHHHHHH
Confidence            4456666565  4678999999999999999999999999999999999999  9999999998 699999999999999


Q ss_pred             CCCCCCCcchhHHH--HHHHHHHhhhhhheeccCCC--chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC
Q psy10770        100 GLKDPKDPAFKRYF--YLLENLAYVKSFNMCFELED--SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL  175 (253)
Q Consensus       100 ~L~d~~~p~f~~~~--~lLesLA~vks~vl~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v  175 (253)
                      .|.|+.+..|....  .+|+.++++++++.+++.+.  |.++...+|+.|+..++..++.++...|..+|++.|.|   |
T Consensus       524 ~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v  600 (1266)
T KOG1525|consen  524 NLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAE---V  600 (1266)
T ss_pred             hcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcc---h
Confidence            99999886555444  49999999999999999664  88888899999999999999999999999999999999   8


Q ss_pred             CHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCCCCCccc
Q psy10770        176 SHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPNLGDIAP  236 (253)
Q Consensus       176 p~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~~~~~~~  236 (253)
                      +-+++..+...+...+...+..+..+++.++..|+-++.+++-+-++.++.+...||.+++
T Consensus       601 ~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~~s~~v~  661 (1266)
T KOG1525|consen  601 SLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFKYSESVL  661 (1266)
T ss_pred             hhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhhhhHHHH
Confidence            9999999998888888889999999999999999999999999999999888777776654

>KOG1992|consensus

Probab=90.16  E-value=7.1  Score=41.53  Aligned_cols=119  Identities=16%  Similarity=0.299  Sum_probs=77.6

Q ss_pred             CCCCCcchhHHHHHHHHHHhhhhhheeccCCC--chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccC-CCHH
Q psy10770        102 KDPKDPAFKRYFYLLENLAYVKSFNMCFELED--SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDI-LSHE  178 (253)
Q Consensus       102 ~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~-vp~~  178 (253)
                      ++|++|.|  ++|+.|+++-+  +.-.++-.-  --.+...||=.|-.+.+.+. .+...+...+|+.+++-+.. +|.+
T Consensus       603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~  677 (960)
T KOG1992|consen  603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDS  677 (960)
T ss_pred             cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchh
Confidence            56888844  67899999843  222233210  11355566644444433332 35567889999999999887 8877


Q ss_pred             HHHHHHHcccCCc----ccCChhHHHHHHHHHHHchhhhh-----HHHHHHhhhhcc
Q psy10770        179 LLDIILMNIVDPQ----KTQRKNAYLLAKELIVKTNDTLE-----PYIQNLTRLANA  226 (253)
Q Consensus       179 vld~IL~~l~~~~----k~~~p~A~~LA~~vi~~c~~kL~-----~~v~~~f~~~~~  226 (253)
                      ....+- .++.|+    +..-|+.-+|-+..+++.+...+     .+|-.+|..++.
T Consensus       678 ~~~l~~-~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia  733 (960)
T KOG1992|consen  678 YSPLFP-PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA  733 (960)
T ss_pred             HHHHHH-HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence            655444 777664    45668888999999998876555     567778877755

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=86.93  E-value=0.65  Score=28.48  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHhh
Q psy10770         51 HFLSHESKDVQLLIACCIADVLRV   74 (253)
Q Consensus        51 ~LL~HkD~~Vr~~vAcCLadIlRI   74 (253)
                      +++++++.+||..++-||.+|.+.
T Consensus         7 ~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    7 QLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.68  E-value=16  Score=35.35  Aligned_cols=25  Identities=12%  Similarity=0.242  Sum_probs=21.8

Q ss_pred             hhhcCCCcchHHHHHHHHHHHHhhc
Q psy10770         51 HFLSHESKDVQLLIACCIADVLRVY   75 (253)
Q Consensus        51 ~LL~HkD~~Vr~~vAcCLadIlRI~   75 (253)
                      .+|.++|..+|..+..||..+.+.+
T Consensus       274 ~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  274 KLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             HHhhcccchhehhHHHHHHHhhccc
Confidence            5677999999999999999998875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 34/249 (13%), Positives = 68/249 (27%), Gaps = 70/249 (28%)

Query: 21  QTLAHTLQGMGQDEGMYQQYIPLALHIAED---HFLSHESKDVQLLIACCIADVLRVYAP 77
           Q L + +         +   I L +H  +      L  +  +  LL+   + +V      
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNV------ 253

Query: 78  EAPYKDPDQVKTIFLFLIKQL-----NGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELE 132
               ++       F    K L       + D    A   +  L  +       +M    +
Sbjct: 254 ----QNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-------SMTLTPD 301

Query: 133 DSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDI--ILMNIV-- 188
           + + +         K ++                      D L  E+L      ++I+  
Sbjct: 302 EVKSLLL-------KYLD------------------CRPQD-LPREVLTTNPRRLSIIAE 335

Query: 189 ----DPQKTQRKNAYLLAK--ELIVKTNDTLEPYI--QNLTRLANAVFPNLGDIAPLGAM 240
                             K   +I  + + LEP    +   RL  +VFP    I P   +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHI-PTILL 392

Query: 241 EIFMGAMKP 249
            +    +  
Sbjct: 393 SLIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	89.4
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	89.06
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	88.33
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	88.05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	86.62
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	86.28
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	81.45
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	81.34

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=89.40  E-value=8.2  Score=38.09  Aligned_cols=165  Identities=17%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             cCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCCC
Q psy10770         54 SHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELED  133 (253)
Q Consensus        54 ~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~d  133 (253)
                      +..+...+..+.-|+..|.....+  ++..++.+..+...+++.+..+.|.+...    ..+++.++.+-..+--    +
T Consensus       493 ~~~~~~~~~~~~~ai~~l~~~~~~--~~~~~~~~~~l~p~l~~~~~~l~d~~~~~----~~~~~~l~~i~~~~g~----~  562 (852)
T 4fdd_A          493 SKYQHKNLLILYDAIGTLADSVGH--HLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATALQS----G  562 (852)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHGG--GGCCHHHHHHHHHHHHHHHHHSCTTCTTH----HHHHHHHHHHHHHHGG----G
T ss_pred             HHhChHHHHHHHHHHHHHHHHhhh--hhccHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHhH----h
Confidence            333445555677777777765433  23334577888888888888887754433    2466666655443321    1


Q ss_pred             chHHHHHHHHHHHHhhccC----------------cchhHHHHHHHHHHHHhccccC-C-----CHHHHHHHHHcccCCc
Q psy10770        134 SQEIFCALFSLMFKIVNDE----------------HSGKVKSFMLDVLCPLITESDI-L-----SHELLDIILMNIVDPQ  191 (253)
Q Consensus       134 ~d~Li~~lF~~ff~~v~~~----------------~~~~V~~~m~~Il~~vIeE~e~-v-----p~~vld~IL~~l~~~~  191 (253)
                      ....+..+|..+.+.++..                -...+.....+.+..++...+. +     ...++..++..+-.+.
T Consensus       563 ~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  642 (852)
T 4fdd_A          563 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM  642 (852)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC
Confidence            2233344444444443321                1234565556666666554431 1     2367888886665555


Q ss_pred             ccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccC
Q psy10770        192 KTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVF  228 (253)
Q Consensus       192 k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~  228 (253)
                      ....-.|+.+-.++++.|.+.+++|+.+++.-+...+
T Consensus       643 ~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l  679 (852)
T 4fdd_A          643 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL  679 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            5566788888899999999999999999876665555

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=89.06  E-value=3.2  Score=40.19  Aligned_cols=164  Identities=12%  Similarity=0.118  Sum_probs=89.0

Q ss_pred             HHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhh
Q psy10770         43 LALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYV  122 (253)
Q Consensus        43 ~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~v  122 (253)
                      +...|++  .|.+.+..||.-+|-||+.|.+..-|...|      .+++..+++.+.   +.+++  ..+...++.+..+
T Consensus        96 ik~~ll~--~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w------~~ll~~L~~~l~---~~~~~--~~r~~al~~l~~l  162 (861)
T 2bpt_A           96 IKTNALT--ALVSIEPRIANAAAQLIAAIADIELPHGAW------PELMKIMVDNTG---AEQPE--NVKRASLLALGYM  162 (861)
T ss_dssp             HHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHHGGGTCC------HHHHHHHHHHTS---TTSCH--HHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHCCCchHHHHHHHHHHHHHHHhhCccccc------HHHHHHHHHHHh---cCCCH--HHHHHHHHHHHHH
Confidence            3444444  367788999999999999999997674444      334455555543   22133  2223333333322


Q ss_pred             hhhheeccCCC----chHHHHHHHHHHHHhhccC-cchhHHHHHHHHHHHHhccccC-CC-----HHHHHHHHHcccCCc
Q psy10770        123 KSFNMCFELED----SQEIFCALFSLMFKIVNDE-HSGKVKSFMLDVLCPLITESDI-LS-----HELLDIILMNIVDPQ  191 (253)
Q Consensus       123 ks~vl~~DL~d----~d~Li~~lF~~ff~~v~~~-~~~~V~~~m~~Il~~vIeE~e~-vp-----~~vld~IL~~l~~~~  191 (253)
                      -.     ++.+    -...+..++..+....+.. .+..|+......+..+++-.+. ..     ..++..+...+-.++
T Consensus       163 ~~-----~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  237 (861)
T 2bpt_A          163 CE-----SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED  237 (861)
T ss_dssp             HH-----TSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC
T ss_pred             HH-----cCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC
Confidence            11     1111    1234566666666666554 2567888888888887543221 11     235555543332222


Q ss_pred             ccCChhHHHHHHHHHHHchhhhhHHHH-HHhhhh
Q psy10770        192 KTQRKNAYLLAKELIVKTNDTLEPYIQ-NLTRLA  224 (253)
Q Consensus       192 k~~~p~A~~LA~~vi~~c~~kL~~~v~-~~f~~~  224 (253)
                      ......|...-..++....+.+.+++. .++.-+
T Consensus       238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~  271 (861)
T 2bpt_A          238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT  271 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222234455555666667777777776 555533

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=88.33  E-value=5.4  Score=33.07  Aligned_cols=122  Identities=11%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             hHHHHHHHhhhhhh-cCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHH
Q psy10770         40 YIPLALHIAEDHFL-SHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLEN  118 (253)
Q Consensus        40 l~~~~~~Lv~~~LL-~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLes  118 (253)
                      +..+...|.  ++| +.+|..||..++-|+..+.+-..|+  |.  .++..++..++..++   |++..--......|.+
T Consensus        54 ~~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~--~~~~~ilp~ll~~l~---d~~~~vr~~a~~aL~~  124 (242)
T 2qk2_A           54 YGALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--FS--NYASACVPSLLEKFK---EKKPNVVTALREAIDA  124 (242)
T ss_dssp             CHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GH--HHHHHHHHHHHHGGG---CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--HH--HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence            445555553  245 4688999999999999999876653  33  467777777777765   5444333445555555


Q ss_pred             HHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCCHHHHHHHH
Q psy10770        119 LAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILSHELLDIIL  184 (253)
Q Consensus       119 LA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp~~vld~IL  184 (253)
                      +...      .   .-+.    +...++...+..+ ..|+......+..++...+  ......++.++
T Consensus       125 ~~~~------~---~~~~----ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~  178 (242)
T 2qk2_A          125 IYAS------T---SLEA----QQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLT  178 (242)
T ss_dssp             HHTT------S---CHHH----HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHc------C---CHHH----HHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence            5431      1   1223    4444555555444 4889999999999887753  34444444444

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=88.05  E-value=19  Score=37.04  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             HHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHH
Q psy10770         41 IPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLA  120 (253)
Q Consensus        41 ~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA  120 (253)
                      ..+...|.+  .|.++|..||..++-||..+.+-..+       .++..|+..+...+   .|++..   -+......++
T Consensus        47 ~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~-------~~~~~i~~~Ll~~l---~d~~~~---vR~~a~~~L~  111 (1230)
T 1u6g_C           47 RKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE-------YQVETIVDTLCTNM---LSDKEQ---LRDISSIGLK  111 (1230)
T ss_dssp             HHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHHHHT---TCSSSH---HHHHHHHHHH
T ss_pred             HHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHh---cCCcHH---HHHHHHHHHH
Confidence            344444443  35689999999999999999875322       46777777776664   454432   2333445555


Q ss_pred             hhhhhheeccCCC-------chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc-CC-C--HHHHHHHHHcccC
Q psy10770        121 YVKSFNMCFELED-------SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD-IL-S--HELLDIILMNIVD  189 (253)
Q Consensus       121 ~vks~vl~~DL~d-------~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e-~v-p--~~vld~IL~~l~~  189 (253)
                      ++-.     ++..       ......+++..+++...++....++.....++..+++... .+ |  ++++..++..+- 
T Consensus       112 ~i~~-----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~-  185 (1230)
T 1u6g_C          112 TVIG-----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-  185 (1230)
T ss_dssp             HHHH-----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG-
T ss_pred             HHHH-----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc-
Confidence            3322     2221       1234555666666666543445788888888888886432 22 2  455555554443 


Q ss_pred             CcccCChhHHHHHHHHHHHchh
Q psy10770        190 PQKTQRKNAYLLAKELIVKTND  211 (253)
Q Consensus       190 ~~k~~~p~A~~LA~~vi~~c~~  211 (253)
                         ..++.-+.-|...+...+.
T Consensus       186 ---~~~~~vR~~a~~al~~l~~  204 (1230)
T 1u6g_C          186 ---SPRLAVRKRTIIALGHLVM  204 (1230)
T ss_dssp             ---CSSHHHHHHHHHHHHHHTT
T ss_pred             ---CCcHHHHHHHHHHHHHHHH
Confidence               3345555555555554443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=86.62  E-value=5.5  Score=39.34  Aligned_cols=164  Identities=16%  Similarity=0.277  Sum_probs=87.0

Q ss_pred             hhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhc--------------CCCCCCCcchhHHHHHH
Q psy10770         52 FLSHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLN--------------GLKDPKDPAFKRYFYLL  116 (253)
Q Consensus        52 LL~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~--------------~L~d~~~p~f~~~~~lL  116 (253)
                      .+...+++++ .+.-|+.-|.+..-+. .||     +..||..++..+.              ....++..........+
T Consensus       537 ~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-----~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l  610 (852)
T 4fdd_A          537 MLKDEDKDLF-PLLECLSSVATALQSGFLPY-----CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL  610 (852)
T ss_dssp             HSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred             hcccccHHHH-HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence            3456778887 6778899888876553 344     4445554444433              12222222222333444


Q ss_pred             HHHHhhhhhheeccCCCchHHH--HHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc--CCC--HHHHHHHHHcccCC
Q psy10770        117 ENLAYVKSFNMCFELEDSQEIF--CALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD--ILS--HELLDIILMNIVDP  190 (253)
Q Consensus       117 esLA~vks~vl~~DL~d~d~Li--~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e--~vp--~~vld~IL~~l~~~  190 (253)
                      ..+++      .++ ++....+  ..++..+++...+. ...|+......+..+..-..  ..|  ++++..+...+-.+
T Consensus       611 ~~l~~------~l~-~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~  682 (852)
T 4fdd_A          611 SGLAE------GLG-GNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE  682 (852)
T ss_dssp             HHHHH------HHG-GGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHH------HHh-HhHHHHhcCCcHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc
Confidence            44432      122 1223333  35566666655433 34566655555555543222  223  55777777776332


Q ss_pred             cccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCC
Q psy10770        191 QKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFP  229 (253)
Q Consensus       191 ~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~  229 (253)
                      .-+....|-....+++....+.++||+..++..+..-+.
T Consensus       683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~  721 (852)
T 4fdd_A          683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN  721 (852)
T ss_dssp             SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhC
Confidence            212222333334566777777899999888888765554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=86.28  E-value=1  Score=45.15  Aligned_cols=149  Identities=15%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccC
Q psy10770         52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFEL  131 (253)
Q Consensus        52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL  131 (253)
                      -|+..|.|||+.+|.+|..+.         . ++++..+...+-++|..+.| =+++-..-..+|..|-.-..     ..
T Consensus       307 GL~D~DDDVRAVAAetLiPIA---------~-p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~-----~a  370 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP---------I-TDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP-----EL  370 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC---------C-SSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT-----TC
T ss_pred             hcCCcccHHHHHHHHHhhhhc---------c-hhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc-----cc
Confidence            345669999999999998887         1 25799999999999999966 44455566666666655442     11


Q ss_pred             CCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCCCHHHHHHHHHcccCCcccCChhHHHHHHHHHHHchh
Q psy10770        132 EDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDILSHELLDIILMNIVDPQKTQRKNAYLLAKELIVKTND  211 (253)
Q Consensus       132 ~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~vp~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~~c~~  211 (253)
                      .....++..+|--|-     ..-.+|+......+..++      ...++..|+++++-+.   +..-.+++.++.++-.+
T Consensus       371 ~~dp~LVPRL~PFLR-----HtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~---neeIl~lS~~VWk~r~~  436 (800)
T 3oc3_A          371 SIPPERLKDIFPCFT-----SPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEE---KDEIREMAIKLLKKRRD  436 (800)
T ss_dssp             CCCSGGGGGTGGGGT-----CSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCS---CHHHHHHHHHHHHTCSC
T ss_pred             ccChHHHHHHHhhhc-----CCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHH
Confidence            111145555544332     223688888888887766      6789999999887543   36677888888873333


Q ss_pred             hhhHHHHHHhhhhcccCCC
Q psy10770        212 TLEPYIQNLTRLANAVFPN  230 (253)
Q Consensus       212 kL~~~v~~~f~~~~~~~~~  230 (253)
                      =+++-++..-+-.+++|=+
T Consensus       437 Ll~~wi~L~MtPIGv~f~k  455 (800)
T 3oc3_A          437 LPKNLILHFMNVIGGSLYE  455 (800)
T ss_dssp             CCHHHHHHHHHHTTSCSSS
T ss_pred             HHHHHHHHhcCcCCCcccc
Confidence            3899999999988888655

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=81.45  E-value=5.3  Score=35.35  Aligned_cols=151  Identities=13%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCC-Ccc-hhHHHHHHHHHHhhhhhheec
Q psy10770         52 FLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPK-DPA-FKRYFYLLENLAYVKSFNMCF  129 (253)
Q Consensus        52 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~-~p~-f~~~~~lLesLA~vks~vl~~  129 (253)
                      .|.+.+..| .-+|-||+.|.+...|+..|++  -+..+++.    +.   +.+ ++. -......|..+.+--.    -
T Consensus        98 ~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~----l~---~~~~~~~~r~~al~~l~~l~~~~~----~  163 (462)
T 1ibr_B           98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVAN----VT---NPNSTEHMKESTLEAIGYICQDID----P  163 (462)
T ss_dssp             HTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHH----HH---CTTCCHHHHHHHHHHHHHHHHHSC----G
T ss_pred             HhCCCCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHH----hc---cCCCCHHHHHHHHHHHHHHHHhCC----c
Confidence            366777888 8899999999999888766652  44544444    32   221 321 1123333444432100    0


Q ss_pred             cCCCchHHHHHHHHHHHHhhccCc-chhHHHHHHHHHHHHhcccc-CCC-----HHHHHHHHHcccCCcccCChhHHHHH
Q psy10770        130 ELEDSQEIFCALFSLMFKIVNDEH-SGKVKSFMLDVLCPLITESD-ILS-----HELLDIILMNIVDPQKTQRKNAYLLA  202 (253)
Q Consensus       130 DL~d~d~Li~~lF~~ff~~v~~~~-~~~V~~~m~~Il~~vIeE~e-~vp-----~~vld~IL~~l~~~~k~~~p~A~~LA  202 (253)
                      +.  -...+..++..+....+.+. +..|+......+..+++-.+ ..+     .-++..+....-.+.......+.+.-
T Consensus       164 ~~--~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l  241 (462)
T 1ibr_B          164 EQ--LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (462)
T ss_dssp             GG--TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             hh--hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            10  12344556666777666654 56788777777777654221 111     11233333222122222223444555


Q ss_pred             HHHHHHchhhhhHHHH
Q psy10770        203 KELIVKTNDTLEPYIQ  218 (253)
Q Consensus       203 ~~vi~~c~~kL~~~v~  218 (253)
                      ..++..+.+.+.+++.
T Consensus       242 ~~l~~~~~~~~~~~~~  257 (462)
T 1ibr_B          242 VKIMSLYYQYMETYMG  257 (462)
T ss_dssp             HHHHHHCGGGCTTTTT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566666666665554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=81.34  E-value=24  Score=29.97  Aligned_cols=166  Identities=12%  Similarity=0.150  Sum_probs=103.6

Q ss_pred             hhHHHHHHHhhhhhh-cCCCcchHHHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHH
Q psy10770         39 QYIPLALHIAEDHFL-SHESKDVQLLIACCIADVLRVYA-PEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLL  116 (253)
Q Consensus        39 sl~~~~~~Lv~~~LL-~HkD~~Vr~~vAcCLadIlRI~A-PdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lL  116 (253)
                      .+..+...|.  +.+ +.+|..||...+-||..+-+-.. |+  |.- .....++-.+++.++   |....-=....+-|
T Consensus        57 ~~~~~~~~L~--~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~-~y~~~llp~ll~~l~---dkk~~V~~aa~~al  128 (249)
T 2qk1_A           57 NYSNLLGIYG--HIIQKDANIQAVALAAQSVELICDKLKTPG--FSK-DYVSLVFTPLLDRTK---EKKPSVIEAIRKAL  128 (249)
T ss_dssp             CCHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCH-HHHHHHHHHHHHGGG---CCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHhccccc--ccH-HHHHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            3445544442  245 67788899999999999998777 66  430 245566666666664   44333334556667


Q ss_pred             HHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC--------CHHHHHHHHHccc
Q psy10770        117 ENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL--------SHELLDIILMNIV  188 (253)
Q Consensus       117 esLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v--------p~~vld~IL~~l~  188 (253)
                      +++.+.  +.....-+.-++++..+|    ...+... ..++......+..+++.+...        +.+++..+...+-
T Consensus       129 ~~i~~~--~~~~~~~~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~  201 (249)
T 2qk1_A          129 LTICKY--YDPLASSGRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN  201 (249)
T ss_dssp             HHHHHH--SCTTCTTCTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHH--ccccccCCcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc
Confidence            777752  211000001235655555    3444443 488889999999999988753        4556666665555


Q ss_pred             CCcccCChhHHHHHHHHHHHchhh-hhHHHHH
Q psy10770        189 DPQKTQRKNAYLLAKELIVKTNDT-LEPYIQN  219 (253)
Q Consensus       189 ~~~k~~~p~A~~LA~~vi~~c~~k-L~~~v~~  219 (253)
                      .+++....+|+.....+++...++ +.|++..
T Consensus       202 D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~  233 (249)
T 2qk1_A          202 DTQPAIRTIGFESFAILIKIFGMNTFVKTLEH  233 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            556666777777777777777765 8887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.84
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	87.52
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	86.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	84.67
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	83.95

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=1.3  Score=39.44  Aligned_cols=183  Identities=10%  Similarity=0.081  Sum_probs=101.5

Q ss_pred             hhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhc----CCCCCCCcchh-
Q psy10770         37 YQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLN----GLKDPKDPAFK-  110 (253)
Q Consensus        37 ~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~----~L~d~~~p~f~-  110 (253)
                      ...+......|.+...-.+.+..+|..+..|+..+.+-...+ .||     +..+...+...+.    .....-...-. 
T Consensus       493 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~-----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~  567 (861)
T d2bpta1         493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET-----SASISTFVMDKLGQTMSVDENQLTLEDAQ  567 (861)
T ss_dssp             GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH-----HHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred             hHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence            344555666666665556677889999999999998874433 222     2333333333332    22111111001 


Q ss_pred             ----HHHHHHHHHHhhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC----CHHHHHH
Q psy10770        111 ----RYFYLLENLAYVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL----SHELLDI  182 (253)
Q Consensus       111 ----~~~~lLesLA~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v----p~~vld~  182 (253)
                          -...+...++.+..   -+. ++.......++..++.......+..++..+...+..++.-...-    =+.++..
T Consensus       568 ~~~~l~~~~~~~l~~~~~---~~~-~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~  643 (861)
T d2bpta1         568 SLQELQSNILTVLAAVIR---KSP-SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY  643 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCG-GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---cch-hhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence                11112222222110   011 12345566777777777777777777766666666555433221    1345555


Q ss_pred             HHHcccCCcccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccC
Q psy10770        183 ILMNIVDPQKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVF  228 (253)
Q Consensus       183 IL~~l~~~~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~  228 (253)
                      ++..+-.........|..+..++++.+.+.+.||+.++++.++..+
T Consensus       644 l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l  689 (861)
T d2bpta1         644 LLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMI  689 (861)
T ss_dssp             HHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHh
Confidence            5544444444455667777888889999999999988887765443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.37  E-value=0.46  Score=42.53  Aligned_cols=159  Identities=12%  Similarity=0.093  Sum_probs=87.6

Q ss_pred             hcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhhee-ccC
Q psy10770         53 LSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMC-FEL  131 (253)
Q Consensus        53 L~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~-~DL  131 (253)
                      |.+.++.||-.+|.|++.|.|..-|+..|+  +-+..    ++..+   .+.++.  ..+...|+.++.+  |--. ..+
T Consensus       104 l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp--eli~~----L~~~~---~s~~~~--~~~~~al~~l~~i--~e~~~~~~  170 (861)
T d2bpta1         104 LVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKI----MVDNT---GAEQPE--NVKRASLLALGYM--CESADPQS  170 (861)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHH----HHHHT---STTSCH--HHHHHHHHHHHHH--HHTSSTTS
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhCCcCchH--HHHHH----HHHHh---cCCCcH--HHHHHHHHHHHHH--HHHhhHHH
Confidence            467899999999999999999988877664  23333    33333   222222  2222333444322  0000 001


Q ss_pred             CCchHHHHHHHHHHHHhhc-cCcchhHHHHHHHHHHHHhccccC--CC----HHHHHHHHHcccCCcccCChhHHHHHHH
Q psy10770        132 EDSQEIFCALFSLMFKIVN-DEHSGKVKSFMLDVLCPLITESDI--LS----HELLDIILMNIVDPQKTQRKNAYLLAKE  204 (253)
Q Consensus       132 ~d~d~Li~~lF~~ff~~v~-~~~~~~V~~~m~~Il~~vIeE~e~--vp----~~vld~IL~~l~~~~k~~~p~A~~LA~~  204 (253)
                      +.--.-+.+++..++.... .+.+..|+......+...+.-.+.  ..    ..++..+...+-.++......++..-.+
T Consensus       171 ~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         171 QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence            1001122333333443333 344567777777777766654432  12    2234444444444444445567778888


Q ss_pred             HHHHchhhhhHHHHHHhhhh
Q psy10770        205 LIVKTNDTLEPYIQNLTRLA  224 (253)
Q Consensus       205 vi~~c~~kL~~~v~~~f~~~  224 (253)
                      ++....+++.+++.+.+...
T Consensus       251 i~~~~~~~~~~~l~~~l~~l  270 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALYAL  270 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999887766544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=8  Score=35.59  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             cCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhc------CCCC-CCCcchhHHHHHHHHHHhhhhh
Q psy10770         54 SHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLN------GLKD-PKDPAFKRYFYLLENLAYVKSF  125 (253)
Q Consensus        54 ~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~------~L~d-~~~p~f~~~~~lLesLA~vks~  125 (253)
                      .+.|+.. ..+--|++.+.+..... .||.. .....++..+...+.      ...+ .+.+...-..+.+..++.+-..
T Consensus       575 ~~~~~~~-~~~le~l~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~  652 (888)
T d1qbkb_         575 KDEDKDL-FPLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG  652 (888)
T ss_dssp             CTTCTTH-HHHHHHHHHHHHHSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccchHHH-HHHHHHHHHHHHHhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHH
Confidence            3344433 34567999999988776 56653 344555554443321      0111 1222223333444444322111


Q ss_pred             heeccCCCchHHHH--HHHHHHHHhhccCcchhHHHHHHHHHHHHh----ccccCCCHHHHHHHHHcccCCcccCChhHH
Q psy10770        126 NMCFELEDSQEIFC--ALFSLMFKIVNDEHSGKVKSFMLDVLCPLI----TESDILSHELLDIILMNIVDPQKTQRKNAY  199 (253)
Q Consensus       126 vl~~DL~d~d~Li~--~lF~~ff~~v~~~~~~~V~~~m~~Il~~vI----eE~e~vp~~vld~IL~~l~~~~k~~~p~A~  199 (253)
                         +. +...+++.  .++..++....+. ...|+......+..+.    ......-.+++..++.++-.+..+..+.|-
T Consensus       653 ---l~-~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~  727 (888)
T d1qbkb_         653 ---LG-GNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT  727 (888)
T ss_dssp             ---HT-TTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             ---hh-hhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence               11 11223322  1334444444333 3345544444444333    332222345666666555444333333344


Q ss_pred             HHHHHHHHHchhhhhHHHHHHhhhhcccCCC
Q psy10770        200 LLAKELIVKTNDTLEPYIQNLTRLANAVFPN  230 (253)
Q Consensus       200 ~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~  230 (253)
                      ....+++.+..+.++||+.+.+..++.-+.+
T Consensus       728 ~~ig~ia~~~~~~~~py~~~il~~L~~il~~  758 (888)
T d1qbkb_         728 WAIGEISIQMGIEMQPYIPMVLHQLVEIINR  758 (888)
T ss_dssp             HHHHHHHHHTGGGGGGGSHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcC
Confidence            4445677888889999988888766555543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=12  Score=34.98  Aligned_cols=175  Identities=12%  Similarity=0.058  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhhcCCCc--hhhhhhHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHH
Q psy10770         19 TPQTLAHTLQGMGQDE--GMYQQYIPLALHIAEDHFLSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIK   96 (253)
Q Consensus        19 rLk~L~~~L~~~dQ~~--~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~   96 (253)
                      |...+.+-+..+.++.  .+.+....+...|.+  +|+.++.+||..+.-||..+.+-.       .++++..+...+..
T Consensus        20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~-------~~~~~~~l~~~L~~   90 (1207)
T d1u6gc_          20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV-------KEYQVETIVDTLCT   90 (1207)
T ss_dssp             HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccChHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHhC-------cHhhHHHHHHHHHH
Confidence            4455555555554442  344556667777765  688899999999999999886531       13567777666655


Q ss_pred             HhcCCCCCCCcchhHHHHHHHHHH-hhhhhheeccCCCchHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhccccCC
Q psy10770         97 QLNGLKDPKDPAFKRYFYLLENLA-YVKSFNMCFELEDSQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESDIL  175 (253)
Q Consensus        97 ~l~~L~d~~~p~f~~~~~lLesLA-~vks~vl~~DL~d~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e~v  175 (253)
                      .+.   +.+...-.-....|.++- +.-....  .-.-...+...+...+.+.........+.....+++..++.-....
T Consensus        91 ~l~---~~~~~~r~~~~~~L~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          91 NML---SDKEQLRDISSIGLKTVIGELPPASS--GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             HTT---CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             Hhc---CCchhhhHHHHHHHHHHHHhcccccc--cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            543   222221122222232221 0000000  0001234555666666666655556677778888999888776643


Q ss_pred             CHHHHHHHHHcccCCcccCChhHHHHHHHHHH
Q psy10770        176 SHELLDIILMNIVDPQKTQRKNAYLLAKELIV  207 (253)
Q Consensus       176 p~~vld~IL~~l~~~~k~~~p~A~~LA~~vi~  207 (253)
                      -.+..+.++..+++.-.+.++.-++-|...+.
T Consensus       166 l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~  197 (1207)
T d1u6gc_         166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALG  197 (1207)
T ss_dssp             CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            32223344444443333444555554444443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=9.4  Score=35.08  Aligned_cols=168  Identities=17%  Similarity=0.209  Sum_probs=100.7

Q ss_pred             hcCCCcchHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhheeccCC
Q psy10770         53 LSHESKDVQLLIACCIADVLRVYAPEAPYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNMCFELE  132 (253)
Q Consensus        53 L~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl~~DL~  132 (253)
                      ++..+.+++..+.-|+.-+..-..+..-  .+.-+..+...+.+.+..+.+.+.    ....++|.++.+-...-    .
T Consensus       528 l~~~~~~~~~~~~~al~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~le~l~~i~~~~~----~  597 (888)
T d1qbkb_         528 FSKYQHKNLLILYDAIGTLADSVGHHLN--KPEYIQMLMPPLIQKWNMLKDEDK----DLFPLLECLSSVATALQ----S  597 (888)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHGGGGC--SHHHHHHHHHHHHHHHTTSCTTCT----THHHHHHHHHHHHHHST----T
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHHhH----H
Confidence            4555667777777777776665444432  223455666677888887776443    34577888877653322    1


Q ss_pred             CchHHHHHHHHHHHHhhcc---------------C-cchhHHHHHHHHHHHHhccccCCCH------HHHHHHHHcccCC
Q psy10770        133 DSQEIFCALFSLMFKIVND---------------E-HSGKVKSFMLDVLCPLITESDILSH------ELLDIILMNIVDP  190 (253)
Q Consensus       133 d~d~Li~~lF~~ff~~v~~---------------~-~~~~V~~~m~~Il~~vIeE~e~vp~------~vld~IL~~l~~~  190 (253)
                      +.......+|+.+++++..               + -...+.....+++..+++-.+.--.      .++..++..+-.+
T Consensus       598 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~  677 (888)
T d1qbkb_         598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK  677 (888)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC
Confidence            2223333344433333211               1 1234455666777777654432221      2455566555545


Q ss_pred             cccCChhHHHHHHHHHHHchhhhhHHHHHHhhhhcccCCC
Q psy10770        191 QKTQRKNAYLLAKELIVKTNDTLEPYIQNLTRLANAVFPN  230 (253)
Q Consensus       191 ~k~~~p~A~~LA~~vi~~c~~kL~~~v~~~f~~~~~~~~~  230 (253)
                      .......|+.+..++++.|...++||+.+++.-+...+++
T Consensus       678 ~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~  717 (888)
T d1qbkb_         678 MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP  717 (888)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCG
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCc
Confidence            4455677888888999999999999999999888766654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=9.1  Score=35.95  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             hhhhhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHhhhhhhe
Q psy10770         49 EDHFLSHESKDVQLLIACCIADVLRVYAPE-APYKDPDQVKTIFLFLIKQLNGLKDPKDPAFKRYFYLLENLAYVKSFNM  127 (253)
Q Consensus        49 ~~~LL~HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~qLkdIF~l~v~~l~~L~d~~~p~f~~~~~lLesLA~vks~vl  127 (253)
                      ...+.+.++.+||..+.-++.++++-+.+. .||     ...+.+.++.   .|.+++..--++....|..++..     
T Consensus       136 ~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-----~~~il~~l~~---~l~~~~~~vR~~A~~~l~~l~~~-----  202 (1207)
T d1u6gc_         136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-----HPSILTCLLP---QLTSPRLAVRKRTIIALGHLVMS-----  202 (1207)
T ss_dssp             HHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-----HHHHHHHHGG---GGGCSSHHHHHHHHHHHHHHTTT-----
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-----HHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHH-----
Confidence            344567788889999889999999987654 233     3445554444   44454433333334444444321     


Q ss_pred             eccCCC--chHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHhcccc----CCCHHHHHHHHHcccCCcccCChhHHHH
Q psy10770        128 CFELED--SQEIFCALFSLMFKIVNDEHSGKVKSFMLDVLCPLITESD----ILSHELLDIILMNIVDPQKTQRKNAYLL  201 (253)
Q Consensus       128 ~~DL~d--~d~Li~~lF~~ff~~v~~~~~~~V~~~m~~Il~~vIeE~e----~vp~~vld~IL~~l~~~~k~~~p~A~~L  201 (253)
                         +++  ..+++..+++.+.    .+.+..++......+..+..-..    .-=++++..++..+-.+.......+...
T Consensus       203 ---~~~~~~~~~~~~ll~~l~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~  275 (1207)
T d1u6gc_         203 ---CGNIVFVDLIEHLLSELS----KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA  275 (1207)
T ss_dssp             ---C----CTTHHHHHHHHHH----HTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence               211  2234555554443    33333333222333333332221    1124677777766655555555667777


Q ss_pred             HHHHHHHchhhhhHHHHHHhhhhcccC
Q psy10770        202 AKELIVKTNDTLEPYIQNLTRLANAVF  228 (253)
Q Consensus       202 A~~vi~~c~~kL~~~v~~~f~~~~~~~  228 (253)
                      -..++..|.+.+.+++.+.+......+
T Consensus       276 l~~l~~~~~~~~~~~~~~ii~~~l~~l  302 (1207)
T d1u6gc_         276 FESFVRRCPKEVYPHVSTIINICLKYL  302 (1207)
T ss_dssp             HHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhChhhhhhhHHHHHHHHHHHH
Confidence            788999999999999888777664433