Psyllid ID: psy10771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MVRPKNLYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Secondary Structure (PSIPRED)
ccccccccccHHHEEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHEHEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvrpknlyrhselYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Flexible Loop (DISEMBL)
mvrpknlyrhseLYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLlhsniisklgkr
Low Complexity Region (SEG)
MVRPKNLYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Disordered region (IsUnstruct)
******LYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS*****
Disordered Region (DISOPRED)
*******YRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL***
Disordered Region (DISEMBL)
MVRPKNLYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Disordered Region (DISPRO)
**RPKNLYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRPKNLYRHSELYMYRIIHPVKNRIISFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q28FY0	470	Protein TILB homolog OS=X	yes	N/A	0.56	0.119	0.607	3e-14
Q9VR52	395	Protein TILB OS=Drosophil	yes	N/A	0.56	0.141	0.589	1e-12
B3DH20	440	Protein TILB homolog OS=D	yes	N/A	0.56	0.127	0.553	1e-12
Q1RMR5	472	Protein TILB homolog OS=B	yes	N/A	0.56	0.118	0.535	3e-12
O88978	473	Protein TILB homolog OS=M	yes	N/A	0.56	0.118	0.535	4e-12
Q86X45	466	Protein TILB homolog OS=H	yes	N/A	0.56	0.120	0.535	4e-12
Q4R3F0	466	Protein TILB homolog OS=M	N/A	N/A	0.56	0.120	0.535	4e-12
Q9NJE9	383	Protein TILB homolog OS=T	N/A	N/A	0.56	0.146	0.464	5e-08

>sp|Q28FY0|TILB_XENTR Protein TILB homolog OS=Xenopus tropicalis GN=lrrc6 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 48/56 (85%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          VSEDL+R+RAEHN+ EI +LEEI+LHQ+ +E+IE +DKWC+ L+IL L +N+I K+
Sbjct: 4  VSEDLIRRRAEHNNCEIFSLEEISLHQQDLERIEYIDKWCRELKILYLQNNLIGKI 59

May play a crucial role in regulating cilia motility in pronephric tubules, cloaca and neural tube. May be required for establishing left-right asymmetry of the body plan; controls cell fate and convergent extension (CE) movements during gastrulation, respectively, via the Wnt and the planar cell polarity (PCP) signaling pathways. Required for the proper development of renal glomeruli and tubules.
Xenopus tropicalis (taxid: 8364)

>sp|Q9VR52|TILB_DROME Protein TILB OS=Drosophila melanogaster GN=tilB PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++E+LVRK++EHN++ I TLEEI+LHQE IE IE +  WC+ L+ILLL SN+I++L
Sbjct: 4  ITEELVRKKSEHNERLISTLEEISLHQEDIEVIEHIQNWCRDLKILLLQSNLIARL 59

Cilium-specific protein required for cilia structures in Johnston's sensory organ. Plays a role in motility of cilia and flagella.

Drosophila melanogaster (taxid: 7227)

>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 47/56 (83%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          +SEDL+R+RAEHN+ EI +LEE++LHQ+ I++IE + KWC+ L+IL L +N+I K+
Sbjct: 4  ISEDLIRRRAEHNNGEIFSLEELSLHQQDIQRIEHIHKWCRDLKILYLQNNLIPKI 59

Plays a crucial role in regulating cilia motility in pronephric tubules, cloaca and neural tube. Required for establishing left-right asymmetry of the body plan; controls cell fate and convergent extension (CE) movements during gastrulation, respectively, via the Wnt and the planar cell polarity (PCP) signaling pathways. Required for the proper development of renal glomeruli and tubules.

Danio rerio (taxid: 7955)

>sp|Q1RMR5|TILB_BOVIN Protein TILB homolog OS=Bos taurus GN=LRRC6 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 4  ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Bos taurus (taxid: 9913)

>sp|O88978|TILB_MOUSE Protein TILB homolog OS=Mus musculus GN=Lrrc6 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 4  ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Mus musculus (taxid: 10090)

>sp|Q86X45|TILB_HUMAN Protein TILB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 4  ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Homo sapiens (taxid: 9606)

>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 4  ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Macaca fascicularis (taxid: 9541)

>sp|Q9NJE9|TILB_TRYBB Protein TILB homolog OS=Trypanosoma brucei brucei GN=lrrc6 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 41/56 (73%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++ DL+R+RAEHN+  +  L+E+ALHQ+ IE+IE +   C+ L IL L +N IS++
Sbjct: 4  ITTDLLRRRAEHNEGCLSNLKEVALHQQDIERIELIGDACRELEILYLCNNYISRI 59

Involved in the regulation of the cell cycle; is required for the basal body replication and new flagellum biogenesis.

Trypanosoma brucei brucei (taxid: 5702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
405953478	1114	Leucine-rich repeat-containing protein 6	0.76	0.068	0.548	3e-15
115774597	460	PREDICTED: protein TILB homolog [Strongy	0.56	0.121	0.660	1e-14
313245299	346	unnamed protein product [Oikopleura dioi	0.56	0.161	0.696	3e-14
313218365	296	unnamed protein product [Oikopleura dioi	0.56	0.189	0.696	5e-14
313225879	298	unnamed protein product [Oikopleura dioi	0.56	0.187	0.696	5e-14
350419152	447	PREDICTED: leucine-rich repeat-containin	0.53	0.118	0.716	5e-14
340708838	449	PREDICTED: leucine-rich repeat-containin	0.53	0.118	0.716	5e-14
221128471	429	PREDICTED: protein TILB homolog [Hydra m	0.56	0.130	0.660	1e-13
196002221	404	hypothetical protein TRIADDRAFT_22994 [T	0.56	0.138	0.660	4e-13
226479220	162	Protein phosphatase 1 regulatory subunit	0.56	0.345	0.625	5e-13

>gi|405953478|gb|EKC21133.1| Leucine-rich repeat-containing protein 6 [Crassostrea gigas]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 6/82 (7%)

Query: 22  VKNRIISFVKLKKLSL-----FWTT-VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIE 75
           +  R  SF  L   S+     F ++ V+EDLVRKRAEHN+ EI TLEEI+LHQ+ IEKIE
Sbjct: 633 IATRGKSFTNLNAFSIPIFHAFQSSGVTEDLVRKRAEHNNLEISTLEEISLHQQDIEKIE 692

Query: 76  ALDKWCKHLRILLLHSNIISKL 97
            LD+WC+ L+IL L SN+I K+
Sbjct: 693 NLDRWCRDLKILYLQSNLIPKI 714

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|115774597|ref|XP_791802.2| PREDICTED: protein TILB homolog [Strongylocentrotus purpuratus]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 49/56 (87%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++ED+VRKR+EHN+ EI TLEEI+LHQ+ IE+IE LDKWC+HL+IL L SN+I K+
Sbjct: 4  ITEDMVRKRSEHNEMEISTLEEISLHQQDIERIEFLDKWCRHLKILYLQSNLIPKI 59

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|313245299|emb|CBY40071.1| unnamed protein product [Oikopleura dioica]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 49/56 (87%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 4  ITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313218365|emb|CBY41595.1| unnamed protein product [Oikopleura dioica]

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 49/56 (87%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 4  ITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313225879|emb|CBY21022.1| unnamed protein product [Oikopleura dioica]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 49/56 (87%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 4  ITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350419152|ref|XP_003492089.1| PREDICTED: leucine-rich repeat-containing protein 6-like [Bombus impatiens]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 48/53 (90%)

Query: 45 DLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          DL+RKR+EHN+ EI TLEEIALHQE+IEKIE +D+ CKHL+ILLL +N+ISK+
Sbjct: 7  DLLRKRSEHNEGEISTLEEIALHQENIEKIELIDRTCKHLKILLLQNNLISKI 59

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708838|ref|XP_003393026.1| PREDICTED: leucine-rich repeat-containing protein 6-like [Bombus terrestris]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 48/53 (90%)

Query: 45 DLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          DL+RKR+EHN+ EI TLEEIALHQE+IEKIE +D+ CKHL+ILLL +N+ISK+
Sbjct: 7  DLLRKRSEHNEGEISTLEEIALHQENIEKIELIDRTCKHLKILLLQNNLISKI 59

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221128471|ref|XP_002157387.1| PREDICTED: protein TILB homolog [Hydra magnipapillata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 47/56 (83%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDLVRKRAEHN+ E+ TLEE++LHQ  IEKIE LDKWC+ +RIL L SN+I K+
Sbjct: 4  ITEDLVRKRAEHNNCELSTLEEVSLHQLDIEKIEYLDKWCREIRILYLQSNLIMKI 59

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|196002221|ref|XP_002110978.1| hypothetical protein TRIADDRAFT_22994 [Trichoplax adhaerens] gi|190586929|gb|EDV26982.1| hypothetical protein TRIADDRAFT_22994, partial [Trichoplax adhaerens]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          V+E L+R+RAEHN+ EI TLEEI+LHQ+ IEKIE LDKWC+ L IL L SN+I K+
Sbjct: 1  VTEQLIRRRAEHNNMEITTLEEISLHQQDIEKIEYLDKWCRDLTILYLQSNLIPKI 56

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|226479220|emb|CAX73105.1| Protein phosphatase 1 regulatory subunit 7 [Schistosoma japonicum]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          ++EDL+RKRAEHND EI +LEEI+LHQ+HIE+I+ +  WCK LRIL L +N+I K+
Sbjct: 4  ITEDLIRKRAEHNDGEIYSLEEISLHQQHIERIDHIQNWCKSLRILYLQNNLIPKI 59

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
UNIPROTKB|F1NUJ0	476	LRRC6 "Uncharacterized protein	0.57	0.119	0.631	1.3e-14
FB|FBgn0014395	395	tilB "touch insensitive larva	0.56	0.141	0.589	1.3e-13
RGD|1559937	306	Lrrc6 "leucine rich repeat con	0.56	0.183	0.517	4.3e-13
ZFIN|ZDB-GENE-040827-2	440	lrrc6 "leucine rich repeat con	0.56	0.127	0.553	4.7e-13
UNIPROTKB|Q86X45	466	LRRC6 "Protein TILB homolog" [	0.56	0.120	0.535	6.8e-13
UNIPROTKB|Q1RMR5	472	LRRC6 "Protein TILB homolog" [	0.56	0.118	0.535	7e-13
MGI|MGI:1859553	473	Lrrc6 "leucine rich repeat con	0.56	0.118	0.535	7e-13
UNIPROTKB|F1RRU0	472	LRRC6 "Uncharacterized protein	0.56	0.118	0.535	1.5e-12
UNIPROTKB|Q9NJE9	383	lrrc6 "Protein TILB homolog" [	0.56	0.146	0.464	8e-09

UNIPROTKB|F1NUJ0 LRRC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 36/57 (63%), Positives = 49/57 (85%)

Query:    41 TVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             +V+EDLVR+RAEHN+ EI +LEEI+LHQ+ IEK+E LDKWC+ L+IL L +N+I K+
Sbjct:     3 SVTEDLVRRRAEHNNCEIFSLEEISLHQQEIEKLEYLDKWCRDLKILYLQNNLIPKI 59

GO:0000239 "pachytene" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

FB|FBgn0014395 tilB "touch insensitive larva B" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++E+LVRK++EHN++ I TLEEI+LHQE IE IE +  WC+ L+ILLL SN+I++L
Sbjct:     4 ITEELVRKKSEHNERLISTLEEISLHQEDIEVIEHIQNWCRDLKILLLQSNLIARL 59

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP

GO:0010378 "temperature compensation of the circadian clock" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0035083 "cilium axoneme assembly" evidence=IMP

RGD|1559937 Lrrc6 "leucine rich repeat containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 29/56 (51%), Positives = 47/56 (83%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++EDL+R+ AEHN+  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I+K+
Sbjct:     4 ITEDLIRRNAEHNECVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIAKI 59

GO:0003341 "cilium movement" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=ISO

GO:0036159 "inner dynein arm assembly" evidence=ISO

GO:0044458 "motile cilium assembly" evidence=ISO

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISO

GO:0061458 "reproductive system development" evidence=ISO

ZFIN|ZDB-GENE-040827-2 lrrc6 "leucine rich repeat containing 6" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 31/56 (55%), Positives = 47/56 (83%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             +SEDL+R+RAEHN+ EI +LEE++LHQ+ I++IE + KWC+ L+IL L +N+I K+
Sbjct:     4 ISEDLIRRRAEHNNGEIFSLEELSLHQQDIQRIEHIHKWCRDLKILYLQNNLIPKI 59

GO:0060294 "cilium movement involved in cell motility" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0005929 "cilium" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0042384 "cilium assembly" evidence=IMP

GO:0001539 "ciliary or flagellar motility" evidence=IMP

UNIPROTKB|Q86X45 LRRC6 "Protein TILB homolog" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 6.8e-13, P = 6.8e-13
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     4 ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005929 "cilium" evidence=IDA

GO:0036158 "outer dynein arm assembly" evidence=IMP

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0044458 "motile cilium assembly" evidence=IMP

GO:0003341 "cilium movement" evidence=IMP

GO:0061458 "reproductive system development" evidence=IMP

GO:0030317 "sperm motility" evidence=IMP

GO:0036159 "inner dynein arm assembly" evidence=IMP

GO:0000239 "pachytene" evidence=ISS

GO:0000240 "diplotene" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

UNIPROTKB|Q1RMR5 LRRC6 "Protein TILB homolog" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     4 ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0005929 "cilium" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

MGI|MGI:1859553 Lrrc6 "leucine rich repeat containing 6 (testis)" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 30/56 (53%), Positives = 46/56 (82%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     4 ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0003341 "cilium movement" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005929 "cilium" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=ISO

GO:0036159 "inner dynein arm assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=ISO

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISO

GO:0061458 "reproductive system development" evidence=ISO

UNIPROTKB|F1RRU0 LRRC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 30/56 (53%), Positives = 45/56 (80%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N I K+
Sbjct:     4 ITEDLIRRNAEHNDCIIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNFIGKI 59

GO:0008584 "male gonad development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

UNIPROTKB|Q9NJE9 lrrc6 "Protein TILB homolog" [Trypanosoma brucei brucei (taxid:5702)]

 Score = 139 (54.0 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 26/56 (46%), Positives = 41/56 (73%)

Query:    42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
             ++ DL+R+RAEHN+  +  L+E+ALHQ+ IE+IE +   C+ L IL L +N IS++
Sbjct:     4 ITTDLLRRRAEHNEGCLSNLKEVALHQQDIERIELIGDACRELEILYLCNNYISRI 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100       100   0.00091  102 3  11 22  0.49    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.99u 0.08s 14.07t   Elapsed:  00:00:03
  Total cpu time:  13.99u 0.08s 14.07t   Elapsed:  00:00:03
  Start:  Thu Aug 15 14:46:29 2013   End:  Thu Aug 15 14:46:32 2013

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0032054 "microtubule basal body duplication" evidence=IMP

GO:0043064 "flagellum organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28FY0	TILB_XENTR	No assigned EC number	0.6071	0.56	0.1191	yes	N/A
O88978	TILB_MOUSE	No assigned EC number	0.5357	0.56	0.1183	yes	N/A
Q1RMR5	TILB_BOVIN	No assigned EC number	0.5357	0.56	0.1186	yes	N/A
Q9VR52	TILB_DROME	No assigned EC number	0.5892	0.56	0.1417	yes	N/A
Q86X45	TILB_HUMAN	No assigned EC number	0.5357	0.56	0.1201	yes	N/A
B3DH20	TILB_DANRE	No assigned EC number	0.5535	0.56	0.1272	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.54
KOG0531|consensus	414		96.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.17
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	96.1
KOG1644|consensus	233		95.18
KOG2123|consensus	388		94.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.93
KOG0531|consensus	414		90.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	88.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	83.97
KOG4194|consensus	873		82.67
smart00370	26	LRR Leucine-rich repeats, outliers.	81.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	80.17

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=3.4e-10  Score=83.39  Aligned_cols=59  Identities=27%  Similarity=0.384  Sum_probs=12.8

Q ss_pred             hhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771         39 WTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        39 MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      |||+|.|+|++.+.+++..  .+.|++|+.-.|.+||.++..+.+|+.|+|++|.|++||+
T Consensus         1 ~~~lt~~~i~~~~~~~n~~--~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~   59 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPV--KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG   59 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S--TT
T ss_pred             Ccccccccccccccccccc--ccccccccccccccccchhhhhcCCCEEECCCCCCccccC
Confidence            8999999999999999987  7899999999999999999778999999999999999986

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.54  E-value=1.4e-05  Score=47.21  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             cchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccccC
Q psy10771         59 GTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      .+|++++|+.-+|..|+. ++ -|++|+.|+|++|.|+.|+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCcC
Confidence            368999999999999987 88 89999999999999998763

...

>KOG0531|consensus

Probab=96.64  E-value=0.00042  Score=54.65  Aligned_cols=56  Identities=32%  Similarity=0.407  Sum_probs=47.1

Q ss_pred             HhHHHHHhhcccccccccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccccC
Q psy10771         42 VSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        42 IT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      +....|.+ .+..-+.+.+|++++|++..|++|+. ++ .|.+|+.|.|.+|.|++|++
T Consensus        79 l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~  135 (414)
T KOG0531|consen   79 LRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG  135 (414)
T ss_pred             cchhhhhh-hhcccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc
Confidence            44555555 44557888999999999999999999 77 99999999999999999875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.17  E-value=0.0011  Score=49.02  Aligned_cols=40  Identities=35%  Similarity=0.458  Sum_probs=13.3

Q ss_pred             ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|+++.++.-.|..|+ .+...|++|+.|||.+|.|+.+
T Consensus        63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL  103 (175)
T ss_dssp             -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred             hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence            455566666666666653 3444566666666666666544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=96.10  E-value=0.0015  Score=36.23  Aligned_cols=18  Identities=33%  Similarity=0.349  Sum_probs=16.6

Q ss_pred             chhhhhhhccCCcccccC
Q psy10771         82 KHLRILLLHSNIISKLGK   99 (100)
Q Consensus        82 RnLkILYLQNNlIskIEN   99 (100)
                      .+|+.|+|+.|.|++|||
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            478999999999999998

>KOG1644|consensus

Probab=95.18  E-value=0.0054  Score=49.28  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771         59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      .....|.|.+-||-+++++. .=++|.-|+|.||.|..|++
T Consensus        42 d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p   81 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDP   81 (233)
T ss_pred             cccceecccccchhhcccCC-CccccceEEecCCcceeecc
Confidence            34556777777777777776 56677777777777777765

>KOG2123|consensus

Probab=94.52  E-value=0.013  Score=49.82  Aligned_cols=59  Identities=29%  Similarity=0.454  Sum_probs=46.6

Q ss_pred             hhHHhHHHHHhhcc----cc----------------cccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         39 WTTVSEDLVRKRAE----HN----------------DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        39 MvrIT~eLIRKraE----HN----------------e~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      |+++|++++--||.    ||                =.....||-|+|+--.|..++-+. -|.+||-|||--|.|+.+.
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sld   79 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLD   79 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHH
Confidence            77888887755522    11                123567899999999999999999 8999999999999998763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.07  E-value=0.0085  Score=35.44  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             ccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCc
Q psy10771         58 IGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNII   94 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlI   94 (100)
                      +.+|++++|+.-.|..|+. .=..|++|+.|+|++|.|
T Consensus        24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4556666666666665542 112556666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.93  E-value=0.011  Score=35.02  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             cchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccccC
Q psy10771         59 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      .+|+++.|+.-.|..|.  .++ -|++|+.|+|++|.|..|+.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~   42 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPP   42 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEET
T ss_pred             CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCH
Confidence            36888999998899886  345 78999999999999998763

...

>KOG0531|consensus

Probab=90.70  E-value=0.082  Score=41.83  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=38.7

Q ss_pred             cccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771         55 DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        55 e~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      .+.+.+|++++|+--.|.+|+.++ .|..|+-|++-+|.|+.+++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             hhhhhcchheeccccccccccchh-hccchhhheeccCcchhccC
Confidence            678889999999999999999999 55569999999999998875

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.10  E-value=0.094  Score=26.83  Aligned_cols=16  Identities=31%  Similarity=0.318  Sum_probs=11.5

Q ss_pred             cchhhhhhhccCCccc
Q psy10771         81 CKHLRILLLHSNIISK   96 (100)
Q Consensus        81 CRnLkILYLQNNlIsk   96 (100)
                      |++|+.|.|++|.|+.
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            7899999999999864

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=88.71  E-value=0.15  Score=38.90  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             chhhhhcchhhhhhH-hhHHHhcchhhhhhhccCCcccc
Q psy10771         60 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        60 tLEElsLHQq~IEkI-E~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .|+++++++-.|+.+ +.++ .|++|+.|.+++|.|+.+
T Consensus       141 nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~l  178 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDL  178 (394)
T ss_pred             hcccccccccchhhhhhhhh-ccccccccccCCchhhhh
Confidence            555555555555555 3444 555555555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=83.97  E-value=0.21  Score=25.55  Aligned_cols=16  Identities=25%  Similarity=0.328  Sum_probs=13.6

Q ss_pred             hhhhhhhccCCccccc
Q psy10771         83 HLRILLLHSNIISKLG   98 (100)
Q Consensus        83 nLkILYLQNNlIskIE   98 (100)
                      +|+.|+|.+|.|+.|.
T Consensus         1 ~L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIP   16 (22)
T ss_dssp             TESEEEETSSEESEEG
T ss_pred             CccEEECCCCcCEeCC
Confidence            5889999999998764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4194|consensus

Probab=82.67  E-value=0.42  Score=44.25  Aligned_cols=46  Identities=28%  Similarity=0.398  Sum_probs=37.8

Q ss_pred             cccccccc---chhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         52 EHNDKEIG---TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        52 EHNe~~L~---tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +-|+|-++   +|++++|++-.|++|+  .-+ .|..|+-|.|.+|.|.++.
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCC
Confidence            35677655   5678999999999996  244 7999999999999998864

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.51  E-value=0.46  Score=24.45  Aligned_cols=17  Identities=41%  Similarity=0.407  Sum_probs=14.4

Q ss_pred             chhhhhhhccCCccccc
Q psy10771         82 KHLRILLLHSNIISKLG   98 (100)
Q Consensus        82 RnLkILYLQNNlIskIE   98 (100)
                      .+|+.|+|.+|.|..|.
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            46899999999998774

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.51  E-value=0.46  Score=24.45  Aligned_cols=17  Identities=41%  Similarity=0.407  Sum_probs=14.4

Q ss_pred             chhhhhhhccCCccccc
Q psy10771         82 KHLRILLLHSNIISKLG   98 (100)
Q Consensus        82 RnLkILYLQNNlIskIE   98 (100)
                      .+|+.|+|.+|.|..|.
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            46899999999998774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=80.17  E-value=0.85  Score=34.88  Aligned_cols=63  Identities=22%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             eeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771         31 KLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        31 ~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      +|+.|++..-.|+.--      ..-+.+.+|+.+++++-+|..+.....-..+|+.|++++|.|+.|..
T Consensus       141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             hcccccccccchhhhh------hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence            3555555544444321      45678899999999999999998876578999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 41 TVSEDLVRKRAEHNDKEIGTLEEIALHQEH--IEKIEALDKWCKHLRILLLHSNIISKL 97
          T  +D +R   E         E++ LH     IEK++A     K  + L L +N I K+
Sbjct: 5  TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 43 SEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 97
          + +L+ + A++ +       E+ L    I  IE L         +    N I KL
Sbjct: 5  TAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.91
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	92.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	91.92
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	91.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	91.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	91.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	91.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	91.24
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	90.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	90.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	90.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	90.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	90.11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	89.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	89.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	89.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	89.15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	89.13
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	88.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	88.53
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	88.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	88.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	88.0
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	87.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	87.96
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	87.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	87.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	87.17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	86.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	86.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	86.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	86.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	86.13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	85.94
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	85.91
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	85.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	85.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	85.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	85.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	85.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	84.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	84.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	84.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	84.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	84.22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	84.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	84.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	83.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	83.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	83.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	83.5
1o6v_A	466	Internalin A; bacterial infection, extracellular r	83.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	83.14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	83.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	82.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	82.9
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	82.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	82.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	82.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	82.19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	82.13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	81.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	81.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	81.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	81.53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	81.2
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	81.17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	81.04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	80.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	80.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	80.5
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	80.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	80.35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	80.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	80.14

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.91  E-value=7.6e-07  Score=58.86  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             hhHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         39 WTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        39 MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      |+++|.++|++.+..-  -..+|++++|+.-.|..|+.+...+++|+.|+|++|.|+.+
T Consensus         1 m~~lt~~~i~~~~~~~--~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~   57 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL   57 (176)
T ss_dssp             -CCCCHHHHHTSCEEE--CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE
T ss_pred             CccccHHHHHHHHhcC--CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc
Confidence            8999999999876543  36789999999999998888887777999999999988765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=92.92  E-value=0.016  Score=36.60  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=17.8

Q ss_pred             ccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+.   .++ .|++|+.|+|.+|.|+.
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGG
T ss_pred             CCCCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccc
Confidence            344555555554444432   222 34555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.78  E-value=0.015  Score=43.71  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             ccchhhhhcchhhhhhHhhHH---HhcchhhhhhhccCCccccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALD---KWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~---~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+|++|+|+.-.|..|+.+.   ..|++|+.|+|++|.|+.++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~  212 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER  212 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch
Confidence            557888888888888776443   47889999999999888663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=92.68  E-value=0.015  Score=37.36  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=22.7

Q ss_pred             ccchhhhhcchhhhhh-HhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEk-IE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|.. +..+...|++|+.|+|++|.|+.+
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  110 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI  110 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence            4556666666655555 444443466666666666665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=92.30  E-value=0.014  Score=38.93  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=22.6

Q ss_pred             ccchhhhhcchhh-hhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEH-IEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~-IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-. |..+..++ -|++|+.|+|++|.|+.+
T Consensus       135 l~~L~~L~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCCC
T ss_pred             CCCCCEEEccCCCCccccHhhc-CCCCCCEEECCCCCCcCh
Confidence            4556666666554 55555554 456666666666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=91.92  E-value=0.018  Score=40.69  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=28.4

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~~l~-~l~~L~~L~L~~N~l~~l~  101 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLSPLK-DLTKLEELSVNRNRLKNLN  101 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCSCCT
T ss_pred             hhCCCCCEEECCCCccCCChhhc-cCCCCCEEECCCCccCCcC
Confidence            34566777777777777666655 6677777777777776553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=91.77  E-value=0.026  Score=35.56  Aligned_cols=63  Identities=25%  Similarity=0.355  Sum_probs=45.4

Q ss_pred             eeeeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhh-HhhHHHhcchhhhhhhccCCcccc
Q psy10771         28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        28 ~~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEk-IE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+-.|+.|.+---.++.-       ..-+.+.+|+.++|+.-.|.. +...-..|++|+.|+|++|.|+.+
T Consensus        40 ~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~  103 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL  103 (149)
T ss_dssp             TCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred             hcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence            344566666554444432       223457889999999999988 776665799999999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=91.68  E-value=0.024  Score=37.72  Aligned_cols=37  Identities=14%  Similarity=0.247  Sum_probs=17.0

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      +.+|++++|+.-.|..+..+. .|++|+.|+|.+|.|+
T Consensus       158 l~~L~~L~l~~n~i~~~~~l~-~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          158 LPELKSLNIQFDGVHDYRGIE-DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSCCEEECTTBCCCCCTTGG-GCSSCCEEEECBC---
T ss_pred             CCCCCEEECCCCCCcChHHhc-cCCCCCEEEeeCcccC
Confidence            344555555554444444444 4455555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=91.52  E-value=0.02  Score=40.36  Aligned_cols=39  Identities=21%  Similarity=0.472  Sum_probs=18.7

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      .+.+|++++++...|..++.++ .|++|+.|+|++|.|+.
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~-~~~~L~~L~l~~n~i~~   80 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITD   80 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCC
T ss_pred             hcccccEEEEeCCccccchhhh-hcCCccEEEccCCcccc
Confidence            3444455555554444444444 44555555555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=91.50  E-value=0.028  Score=39.71  Aligned_cols=40  Identities=25%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus       126 ~l~~L~~L~Ls~N~i~~~~~l~-~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSIVMLG-FLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TCTTCCEEECTTSCCCBCGGGG-GCTTCCEEECTTSCCCBC
T ss_pred             CcccccEEECCCCcCCCChHHc-cCCCCCEEECCCCcCcch
Confidence            3455566666655555555444 456666666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=91.24  E-value=0.021  Score=40.77  Aligned_cols=38  Identities=13%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++++.-+|..++.++ .|++|+.|+|.+|.|+.
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~-~l~~L~~L~L~~n~l~~   82 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTD   82 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCC
T ss_pred             cCcccEEEccCCCcccChhHh-cCCCCCEEEccCCccCC
Confidence            445555555555555555444 45555555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=90.80  E-value=0.031  Score=38.99  Aligned_cols=38  Identities=18%  Similarity=0.324  Sum_probs=17.4

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+..  ++ .|++|+.|+|.+|.|+.
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~  123 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQS  123 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCccCccChhHhc-CCcCCCEEECCCCcCCc
Confidence            3444455555444444432  22 34555555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=90.70  E-value=0.035  Score=39.59  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=13.8

Q ss_pred             cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCc
Q psy10771         59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNII   94 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlI   94 (100)
                      .+|++++|+.-.|..++.++ .|++|+.|+|.+|.|
T Consensus       112 ~~L~~L~L~~n~i~~~~~l~-~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKI  146 (291)
T ss_dssp             TTCCEEECTTSCCCCCGGGG-GCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCCCChhhc-CCCCCCEEEccCCcC
Confidence            33444444443333333333 333444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=90.42  E-value=0.03  Score=39.02  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus        61 ~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~L~~n~l~~~  100 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQLQSL  100 (272)
T ss_dssp             GCTTCCEEECTTSCCCCCGGGT-TCTTCCEEECTTSCCCCC
T ss_pred             cCCCCcEEECCCCCCCCchhhc-CCCCCCEEECCCCccCcc
Confidence            3556666666666666655555 566666666666666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=90.34  E-value=0.043  Score=35.84  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             cccchhhhhcchhhhhhHhh---HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~---L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..   +. .|++|+.|+|++|.|+.+
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGS
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCc
Confidence            34555666665555544433   33 455566666666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=90.11  E-value=0.018  Score=38.40  Aligned_cols=39  Identities=31%  Similarity=0.393  Sum_probs=23.5

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|+.++|+.-.|..+...-..|++|+.|+|++|.|+.
T Consensus        69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc
Confidence            455666666666666655444455666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=89.73  E-value=0.034  Score=39.88  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+..++ -|++|+.|+|.+|.|+.+
T Consensus        62 l~~L~~L~L~~n~i~~~~~~~-~l~~L~~L~L~~n~l~~~  100 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAPLK-NLTKITELELSGNPLKNV  100 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGT-TCCSCCEEECCSCCCSCC
T ss_pred             cCCCCEEEccCCcCCCChhHc-cCCCCCEEEccCCcCCCc
Confidence            455555555555555555443 455666666666655443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=89.52  E-value=0.052  Score=36.70  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|++++|+.-.|..+..  +. -+++|+.|+|.+|.|+.+.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCC
T ss_pred             hcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeC
Confidence            345677777777777777752  44 5677888888888777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=89.41  E-value=0.046  Score=38.51  Aligned_cols=40  Identities=28%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..++.++ .|++|+.|+|.+|.|+.+
T Consensus        86 ~l~~L~~L~L~~n~i~~~~~~~-~l~~L~~L~l~~n~i~~~  125 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDISALQ-NLTNLRELYLNEDNISDI  125 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGT-TCTTCSEEECTTSCCCCC
T ss_pred             cCCcCCEEEccCCcccCchHHc-CCCcCCEEECcCCcccCc
Confidence            3455555555555555555544 556666666666655543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=89.15  E-value=0.048  Score=39.06  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccccC
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      +.+|++|.|.. .|..|+.  .. .|.+|+.|.|.+|.|..|..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~-~~~~L~~l~l~~n~i~~i~~  141 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFK-GCDNLKICQIRKKTAPNLLP  141 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTT-TCTTCCEEEBCCSSCCEECT
T ss_pred             cCCCcEEECCc-cccchhHHHhh-cCcccceEEcCCCCccccch
Confidence            78999999999 9999974  55 89999999999999877753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=89.13  E-value=0.039  Score=37.89  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=17.3

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|+.++|+.-.|..+..  ++ .+++|+.|+|++|.|+.|
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~l  127 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFD-RLVHLKELFMCCNKLTEL  127 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCSC
T ss_pred             CCCcCEEECCCCcCCccChhHhC-cchhhCeEeccCCccccc
Confidence            3444444444444444421  22 344455555555544433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=88.67  E-value=0.042  Score=40.84  Aligned_cols=40  Identities=30%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      -+..|+.++|+.-+|..|+.  ++ -|++|+.|+|++|.|+.+
T Consensus        74 ~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEE
T ss_pred             CCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCCcCCCC
Confidence            35667777777777776642  44 567777777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=88.53  E-value=0.037  Score=41.14  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccccC
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      -+.+|++++|+.=.|..+.  .++ .|.+|+.|+|.+|.|+.|..
T Consensus        98 ~L~~L~~L~Ls~N~l~~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~  141 (635)
T 4g8a_A           98 SLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN  141 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECGGGGT-TCTTCCEEECTTSCCCCSTT
T ss_pred             CCCCCCEEEccCCcCCCCCHHHhc-CCCCCCEEECCCCcCCCCCh
Confidence            4678888888887777764  244 68889999999998887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=88.39  E-value=0.064  Score=41.03  Aligned_cols=66  Identities=21%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             eeeeeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhhhHh--hHH---HhcchhhhhhhccCCcc
Q psy10771         28 SFVKLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIE--ALD---KWCKHLRILLLHSNIIS   95 (100)
Q Consensus        28 ~~~~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE--~L~---~~CRnLkILYLQNNlIs   95 (100)
                      .|-+|+.|.+....++.+....-++  .+.+.+|++++|+.-.|...+  .|.   ..|++|+.|.|++|.|+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~--a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLE--SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHH--CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHh--CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            3778999999888888655443333  246889999999887776632  222   26899999999999886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=88.20  E-value=0.047  Score=37.42  Aligned_cols=41  Identities=27%  Similarity=0.342  Sum_probs=26.1

Q ss_pred             cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskI   97 (100)
                      -+.+|++++|+.-.|..|.. .-.-+++|+.|+|++|.|+.+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence            34667777777776666642 112567777777777777655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=88.00  E-value=0.023  Score=37.86  Aligned_cols=40  Identities=25%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..++ .|++|+.|+|++|.|+.+
T Consensus        91 ~~~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHHHHH-HHHHSSEEEESEEECCCH
T ss_pred             cCCcCCEEECcCCcCCcCCccc-cCCCCCEEECCCCcCCch
Confidence            3467888888888888887776 678888888888888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=87.99  E-value=0.066  Score=38.35  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=16.3

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      +.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+
T Consensus       106 l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVTPLA-GLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             CTTCCEEECTTSCCCCCGGGT-TCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCCchhhc-CCCCCCEEECCCCccC
Confidence            334444444444444444333 3444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=87.96  E-value=0.04  Score=35.34  Aligned_cols=38  Identities=24%  Similarity=0.158  Sum_probs=20.6

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..++.++ .|++|+.|+|++|.|+.
T Consensus        48 l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~~   85 (168)
T 2ell_A           48 FVNLEFLSLINVGLISVSNLP-KLPKLKKLELSENRIFG   85 (168)
T ss_dssp             GGGCCEEEEESSCCCCCSSCC-CCSSCCEEEEESCCCCS
T ss_pred             CCCCCEEeCcCCCCCChhhhc-cCCCCCEEECcCCcCch
Confidence            445555555555555554444 45556666666665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=87.46  E-value=0.058  Score=36.47  Aligned_cols=42  Identities=31%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +-+.+|++++|+.-.|..|..  ++ -+++|+.|+|++|.|+.+.
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFD-GLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECCSSCCCBCC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhC-CCCCCCEEECCCCCCCeeC
Confidence            346788999999888888753  55 5788999999999888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=87.31  E-value=0.065  Score=38.14  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      -+.+|++|+|+.-.|..|.  .++ -+++|+.|+|++|.|+.+.
T Consensus        54 ~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           54 GLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             SCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCC
T ss_pred             cccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccceeC
Confidence            4667778888877777764  234 5677888888888777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=87.17  E-value=0.056  Score=35.73  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=16.6

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNII   94 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlI   94 (100)
                      +.+|++++|+.-.|..+..  ++ -+++|+.|+|.+|.+
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFD-NLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCB
T ss_pred             CCCCCEEECCCCccCEeCHHHhc-CCCCCCEEEeCCCCC
Confidence            3445555555444444421  22 344555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=86.88  E-value=0.063  Score=35.91  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+..  ++ ..++|+.|+|++|.|+.
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCE
T ss_pred             cccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCe
Confidence            3455555555555555432  33 34555666666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=86.48  E-value=0.066  Score=36.65  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      -+.+|++++|+.-.|..+..  ++ .+++|+.|+|++|.|+.+
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFK-GLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGT-TCSSCCEEECTTSCCCCB
T ss_pred             CCCCCCEEECCCCccCccCHhHhc-CCcCCCEEECCCCcCCeE
Confidence            35667777777777766642  44 567777777777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=86.46  E-value=0.072  Score=35.56  Aligned_cols=42  Identities=14%  Similarity=0.218  Sum_probs=28.9

Q ss_pred             cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|+.++|+.-.|..|.. .-..+++|+.|+|++|.|+.+.
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~   97 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP   97 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence            45677788888777777643 2125678888888888877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=86.24  E-value=0.066  Score=35.73  Aligned_cols=40  Identities=23%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+.+|++++|+.-.|..+..  ++ -+++|+.|+|++|.+..
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFD-NLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCBCT
T ss_pred             CCcchhhEEECCCCccceeCHHHhc-cccCCCEEEeCCCCccc
Confidence            456788999998888887753  44 57889999999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=86.13  E-value=0.11  Score=42.12  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=17.1

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      +.+|++|+|+.-.|..++.++ -|++|+.|+|.+|.|+
T Consensus       108 l~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGG-GCTTCSEEECCSSCCC
T ss_pred             CCCCCEEEecCCCCCCCcccc-CCCccCEEECCCCccC
Confidence            344444444444444444444 3444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=85.94  E-value=0.07  Score=35.35  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=18.1

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+..  ++ .+++|+.|+|++|.|+.
T Consensus        99 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSC
T ss_pred             ccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccce
Confidence            3445555555544444422  22 34555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=85.91  E-value=0.071  Score=35.32  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..  ++ .+++|+.|+|++|.|+.+
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~  115 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQSL  115 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             CCCCcCEEECCCCcCCccCHhHhc-CccCCCEEEcCCCcCccc
Confidence            35666677776666665542  33 566777777777766554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=85.88  E-value=0.1  Score=42.34  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=17.9

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++|+|+.-.|..+..+. -|++|+.|+|.+|.|+.
T Consensus        64 l~~L~~L~Ls~N~l~~~~~l~-~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKPLT-NLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGG-GCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEEeeCCCCCCChhhc-cCCCCCEEECcCCCCCC
Confidence            344444444444444444433 44455555555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=85.73  E-value=0.15  Score=36.91  Aligned_cols=15  Identities=27%  Similarity=0.255  Sum_probs=7.0

Q ss_pred             hcchhhhhhhccCCc
Q psy10771         80 WCKHLRILLLHSNII   94 (100)
Q Consensus        80 ~CRnLkILYLQNNlI   94 (100)
                      .|++|+.|+|++|.|
T Consensus       242 ~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          242 SWPNLRELGLNDCLL  256 (386)
T ss_dssp             GCTTCCEEECTTCCC
T ss_pred             cCCCcCEEECCCCCC
Confidence            344444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=85.57  E-value=0.082  Score=34.92  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             cccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIskIE   98 (100)
                      -+.+|++++|+.-.|..|.. .-..+++|+.|+|++|.|+.+.
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~   94 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP   94 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence            46778888888888877753 2126788888888888887664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=85.29  E-value=0.078  Score=34.38  Aligned_cols=40  Identities=20%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             cccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+..  ++ -+++|+.|+|++|.|+.+
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFD-KLTQLKELALDTNQLKSV  115 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred             CCCccCEEECCCCCccccCHHHhh-CCcccCEEECcCCcceEe
Confidence            45666677776666665532  23 456677777777766554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=85.27  E-value=0.064  Score=38.15  Aligned_cols=41  Identities=20%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             cccchhhhhcch-hhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQ-q~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|++|+|+. -.|..|.  .++ -+++|+.|+|++|.|+.+.
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~   72 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA   72 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeC
Confidence            345799999984 7888875  355 6899999999999998765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=84.92  E-value=0.087  Score=36.07  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|++++|+.-.|..+.  .++ .+++|+.|+|++|.|+.+.
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCC
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEEC
Confidence            3566777777777666662  344 5667777777777776553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=84.72  E-value=0.1  Score=40.06  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      +..|++++|+.-.|..+..++ .|++|+.|+|++|.|+
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~-~l~~L~~L~Ls~n~l~   77 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIE-KLTGLTKLICTSNNIT   77 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGG-GCTTCSEEECCSSCCS
T ss_pred             cCCCCEEEccCCCcccChhhc-ccCCCCEEEccCCcCC
Confidence            344444444444444443333 3444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=84.71  E-value=0.099  Score=35.76  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+.  .++ -+++|+.|+|++|.|+.+
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCB
T ss_pred             CCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEE
Confidence            4567777777777777662  344 567778888888877665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=84.39  E-value=0.094  Score=37.52  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+.  .++ -|++|+.|+|++|.|+.+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSC
T ss_pred             CCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcC
Confidence            455556666555555552  243 455666666666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=84.22  E-value=0.12  Score=35.52  Aligned_cols=42  Identities=17%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             ccccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|++++|+.-.|..|. .++ .+++|+.|+|++|.|+.+.
T Consensus       109 ~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCC
T ss_pred             CcchhhCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCccC
Confidence            34678888888888887773 454 6788888888888877653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=84.22  E-value=0.1  Score=35.83  Aligned_cols=41  Identities=20%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|++++|+.-.|..+.  .++ .+++|+.|+|++|.|+.+.
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~  123 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLP  123 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCC
T ss_pred             cCCcCCEEECCCCcccccChhHhc-ccCCCCEEEcCCCcCCCcC
Confidence            4567777777777776664  233 5677888888888776653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=84.11  E-value=0.23  Score=35.05  Aligned_cols=41  Identities=17%  Similarity=0.163  Sum_probs=25.4

Q ss_pred             cccchhhhhcchhhhhhHhh----HHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~----L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..++.    +-..+++|+.|+|++|.|+.+
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            45567777777766665554    222456777777777766553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=83.81  E-value=0.086  Score=39.13  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=15.2

Q ss_pred             cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      .+|++++|+.-.|..+..+. -+++|+.|+|.+|.|+
T Consensus       185 ~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPNLT-PLIKLDELDLSGNHLS  220 (440)
T ss_dssp             SSCCEEECTTSCCSSCCCCT-TCSSCCEEECTTSCCC
T ss_pred             cccCeecCCCCcCccccccC-CCcccCEEECCCCccC
Confidence            34444444444444443333 3344444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=83.72  E-value=0.058  Score=36.49  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=17.8

Q ss_pred             ccchhhhhcch-hhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQ-q~IEkIE--~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+. -.|..|.  .++ -|++|+.|+|.+|.|+.
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEECCCS
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCCCCcc
Confidence            34455555554 4444443  122 34555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=83.57  E-value=0.12  Score=38.72  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      .+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.
T Consensus        66 ~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~l~~n~l~~  104 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIAD  104 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCC
T ss_pred             hhcCCCEEECCCCccCCchhhh-ccccCCEEECCCCcccc
Confidence            3455555555555555554444 45556666666665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=83.50  E-value=0.1  Score=38.05  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++|+|+.-.|..+..  ++ .+++|+.|+|++|.|+.+
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFS-DLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhC-CCcCCCEEECCCCcccEE
Confidence            4566666666666665532  33 456667777777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=83.27  E-value=0.15  Score=38.05  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=19.1

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.+..+..++ .|++|+.|+|.+|.|+.
T Consensus        89 l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCC
T ss_pred             cccCCEEECCCCccccChhhc-CCCCCCEEECCCCCCCC
Confidence            344555555555554444433 45555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=83.14  E-value=0.12  Score=35.83  Aligned_cols=15  Identities=27%  Similarity=0.261  Sum_probs=6.6

Q ss_pred             cchhhhhhhccCCcc
Q psy10771         81 CKHLRILLLHSNIIS   95 (100)
Q Consensus        81 CRnLkILYLQNNlIs   95 (100)
                      |++|+.|+|++|.|+
T Consensus       156 l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          156 LTSLKELRLYNNQLK  170 (270)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CcccceeEecCCcCc
Confidence            344444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=83.07  E-value=0.11  Score=35.54  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=15.3

Q ss_pred             cchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcc
Q psy10771         59 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIs   95 (100)
                      .+|++++|+.-.|..+..  ++ .+++|+.|+|++|.|+
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred             CcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCC
Confidence            344444444444443321  22 3344444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=82.92  E-value=0.11  Score=37.97  Aligned_cols=40  Identities=30%  Similarity=0.451  Sum_probs=25.3

Q ss_pred             cccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+.  .++ -+++|+.|+|++|.|+.+
T Consensus       110 ~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSC
T ss_pred             CCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCee
Confidence            3566677777766666653  243 456777777777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=82.90  E-value=0.16  Score=40.64  Aligned_cols=7  Identities=14%  Similarity=0.401  Sum_probs=2.5

Q ss_pred             hhhhhcc
Q psy10771         61 LEEIALH   67 (100)
Q Consensus        61 LEElsLH   67 (100)
                      |++++|+
T Consensus       465 L~~L~Ls  471 (567)
T 1dce_A          465 VTHLDLS  471 (567)
T ss_dssp             CCEEECC
T ss_pred             CcEeecC
Confidence            3333333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=82.75  E-value=0.12  Score=33.56  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             ccchhhhhcchhhhhhHhh-HHHhcchhhhhhhccCCcc
Q psy10771         58 IGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~-L~~~CRnLkILYLQNNlIs   95 (100)
                      +.+|++++|+.-.|..+.. .-..+++|+.|+|++|.+.
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            4566666666666655532 1124566666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=82.75  E-value=0.13  Score=36.45  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             ccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+  +.++ -|++|+.|+|++|.|+.+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l  117 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVEI  117 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCSC
T ss_pred             CCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCcc
Confidence            45566666666656555  2343 456666666666666544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=82.43  E-value=0.11  Score=38.64  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=16.8

Q ss_pred             cchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771         59 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+|++++|+.-.|..+.  .+. -|++|+.|+|.+|.|+.+
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEE
T ss_pred             ccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceE
Confidence            34444444444444431  222 344555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=82.19  E-value=0.14  Score=36.67  Aligned_cols=41  Identities=29%  Similarity=0.463  Sum_probs=27.8

Q ss_pred             ccchh-hhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccccC
Q psy10771         58 IGTLE-EIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        58 L~tLE-ElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      +.+|+ +|.|.. .+..|+ .-=..|.+|+.|+|.+|.|+.|+.
T Consensus       272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            34566 777776 677775 222268888888888888877764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=82.13  E-value=0.12  Score=35.52  Aligned_cols=39  Identities=18%  Similarity=0.269  Sum_probs=21.0

Q ss_pred             ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+.  .++ -|++|+.|+|.+|.|..+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~  115 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASL  115 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCS
T ss_pred             CcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCcccc
Confidence            455566666555555443  233 455666666666655544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=81.85  E-value=0.12  Score=36.84  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=17.4

Q ss_pred             ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+.  .++ -+++|+.|+|++|.|+.
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALR-GLGELQELYLKGNELKT  138 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTT-TCTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCcCcccCHHHHc-CCCCCCEEECCCCCCCc
Confidence            334444444444444442  233 34455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=81.84  E-value=0.14  Score=36.55  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=20.4

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+.+|++++|+.-.|..+...-..+++|+.|+|++|.|+.+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l  115 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL  115 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc
Confidence            344555555555555554433222445555555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=81.74  E-value=0.14  Score=35.14  Aligned_cols=39  Identities=26%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             ccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..++   .++ .+++|+.|+|.+|.|+.+
T Consensus       123 l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          123 LKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEE
T ss_pred             CCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcC
Confidence            455666666655555422   333 456666666666665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=81.53  E-value=0.33  Score=33.79  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=15.5

Q ss_pred             ccchhhhhcchh-hhhh--HhhHHHhcchhhhhhhccC
Q psy10771         58 IGTLEEIALHQE-HIEK--IEALDKWCKHLRILLLHSN   92 (100)
Q Consensus        58 L~tLEElsLHQq-~IEk--IE~L~~~CRnLkILYLQNN   92 (100)
                      +.+|++++|+.- .+..  +..+-..|++|+.|+|.+|
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            344555555443 3332  3332224555555555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=81.20  E-value=0.16  Score=37.02  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=17.5

Q ss_pred             ccchhhhhcchhhhhhHh--hHHHhcchhhhhhhccCCccc
Q psy10771         58 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE--~L~~~CRnLkILYLQNNlIsk   96 (100)
                      +.+|++++|+.-.|..+.  .++ .|++|+.|+|++|.|+.
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCCCE
T ss_pred             cccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcccc
Confidence            344555555554444441  222 34555555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=81.17  E-value=0.2  Score=35.79  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+..  ++ .|++|+.|+|.+|.|+.+
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l  139 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFK-PLSSLTFLNLLGNPYKTL  139 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHT-TCTTCSEEECTTCCCSSS
T ss_pred             CCCCCEEECCCCcCCcCCHhHhC-CCccCCEEECCCCCCccc
Confidence            4566666666666665532  33 466666666666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=81.04  E-value=0.17  Score=35.73  Aligned_cols=39  Identities=28%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             ccchhhhhcchhhhhhH--hhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkI--E~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+  +.++ .|++|+.|+|++|.|+.+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~l  115 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKEL  115 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCSBC
T ss_pred             CCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCCcc
Confidence            45566666665555555  2344 456666666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=80.81  E-value=0.26  Score=35.62  Aligned_cols=40  Identities=30%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             cccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|++++|+.-.|..+. .++ .+++|+.|+|.+|.|+.+
T Consensus       293 ~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CCTTCCEEECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCC
T ss_pred             CCCCCCEEECCCCcceecCcccc-ccCcCCEEECCCCcccee
Confidence            4566777777776666664 344 567777777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=80.57  E-value=0.14  Score=36.14  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=25.4

Q ss_pred             cchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         59 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+|++++|+.-.|..|..  .++++|+.|+|++|.|+.+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~--~~~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPK--GLPAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             TTCCCEECCSSCCCSCCS--CCCSCCSCEECCSCCCCSC
T ss_pred             CcCCEEECCCCCCCchhh--hhcCCCCEEECCCCcCCCC
Confidence            577788887777776532  2357777777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=80.50  E-value=0.19  Score=37.22  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=22.9

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+..  ++ .+++|+.|+|++|.|+.+
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~  151 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFV-YLSKLKELWLRNNPIESI  151 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSC-SCSSCCEEECCSCCCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhh-ccccCceeeCCCCccccc
Confidence            4556666666655555532  33 456666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=80.48  E-value=0.18  Score=37.32  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=22.5

Q ss_pred             ccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..+..  ++ -|++|+.|+|.+|.|..+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFT-GLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSST-TCTTCCEEECTTSCCCEE
T ss_pred             CccCCEEECCCCcCCccCccccc-CCCCCCEEECCCCccccC
Confidence            4556666666655555532  33 466666666666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=80.35  E-value=0.12  Score=36.70  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-.|..|..  ...++|+.|+|.+|.|+.+
T Consensus       252 l~~L~~L~Ls~N~l~~ip~--~~~~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCS--SCCSEEEEEECCSSCCCSC
T ss_pred             cCCCCEEECCCCccChhhh--hccCCceEEECCCCCCCCC
Confidence            4567777777766665532  1126677777777766554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=80.22  E-value=0.15  Score=35.18  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=15.1

Q ss_pred             cchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCcc
Q psy10771         59 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        59 ~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIs   95 (100)
                      .+|++++|+.-.|..+..  ++ .|++|+.|+|++|.|+
T Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          129 AALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCC
T ss_pred             cCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCccc
Confidence            344444444444443321  22 3444444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=80.14  E-value=0.19  Score=37.42  Aligned_cols=14  Identities=43%  Similarity=0.328  Sum_probs=6.0

Q ss_pred             cchhhhhhhccCCc
Q psy10771         81 CKHLRILLLHSNII   94 (100)
Q Consensus        81 CRnLkILYLQNNlI   94 (100)
                      |++|+.|+|.+|.|
T Consensus       148 l~~L~~L~l~~n~l  161 (570)
T 2z63_A          148 LTNLEHLDLSSNKI  161 (570)
T ss_dssp             CTTCCEEECTTSCC
T ss_pred             cCCCCEEeCcCCcc
Confidence            34444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.97
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	95.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.07
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.06
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	94.97
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	94.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.34
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	93.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	93.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	92.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	91.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	90.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	90.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	90.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	86.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	83.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	83.22
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	83.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	82.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	82.54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.5e-08  Score=64.69  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             hHHhHHHHHhhcccccccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccccC
Q psy10771         40 TTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        40 vrIT~eLIRKraEHNe~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      ||+|.++|.+.....+  ..++.|++|+.-.|..|+.+...|++|++|+|++|.|+.+++
T Consensus         1 ~rLt~~~i~~~~~~~n--~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~   58 (162)
T d1a9na_           1 VKLTAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG   58 (162)
T ss_dssp             CCCCHHHHHTSCEEEC--TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC
T ss_pred             CCCCHHHHhhhHhccC--cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC
Confidence            6899999998876653  337899999999999999888789999999999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.61  E-value=5.1e-05  Score=51.22  Aligned_cols=40  Identities=38%  Similarity=0.538  Sum_probs=31.8

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+|++++|+.-+|+.|+.++ -|++|+.|+|.+|.|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~-~l~~L~~L~Ls~N~i~~i~   86 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLS-GMENLRILSLGRNLIKKIE   86 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHH-HHTTCCEEECCEEEECSCS
T ss_pred             ccccceeECcccCCCCccccc-CCccccChhhccccccccc
Confidence            567788888888888887777 6788888888888887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.97  E-value=0.00031  Score=47.60  Aligned_cols=40  Identities=10%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+.+|+++.++.-+|..|+.++ .|++|+.|+|.+|.|+.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~-~L~nL~~L~Ls~N~l~~l   81 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDI   81 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCEEECCCCCCCCccccc-cCCCCCEEeCcCCcCCCC
Confidence            4567888888888888877777 678888888888877655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.79  E-value=0.00043  Score=45.36  Aligned_cols=41  Identities=10%  Similarity=0.342  Sum_probs=32.9

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      ..+.++++++++.-+|..++.++ .|++|+.|+|.+|.|+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~-~l~nL~~L~Ls~N~l~~~   77 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDI   77 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCCEEECCCCCCCCccccc-cCCCcCcCccccccccCc
Confidence            34678888888888888888787 788888888888887655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.21  E-value=0.0011  Score=43.51  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|++|+|+.-.++.|..++ -|++|+.|+|.+|.|+.|.
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l~~l~-~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDISPLA-SLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGG-GCTTCCEEECTTSCCCBCG
T ss_pred             cccccceecccCCCccCCChhhc-CCCCCCEEECcCCcCCCCc
Confidence            45788999999988888888877 7899999999999988764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.14  E-value=0.00089  Score=44.28  Aligned_cols=41  Identities=15%  Similarity=0.463  Sum_probs=27.1

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|+++.++...|..+..|+ .|++|+.|+|.+|.|+.+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~-~l~~L~~L~L~~n~i~~l~   84 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDIK   84 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCCG
T ss_pred             HhcCccEEECcCCCCCCchhHh-hCCCCCEEeCCCccccCcc
Confidence            3556677777777666666665 6777777777777666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0015  Score=42.32  Aligned_cols=42  Identities=19%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             cccchhhhhcchhhhhhHhhH---HHhcchhhhhhhccCCccccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEAL---DKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L---~~~CRnLkILYLQNNlIskIE   98 (100)
                      .+.+|++++|+.=.|..+..+   ...|++|+.|+|++|.|+.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~  107 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER  107 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGG
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccch
Confidence            367899999999998887654   236899999999999998875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.06  E-value=0.0013  Score=41.25  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|+.++++.-.|+.++.+. -|++|+.|+|.+|.|+.++
T Consensus        40 ~~l~~L~~L~l~~N~i~~l~~~~-~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3          40 AALRCLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCCSSS
T ss_pred             hhhhcccccccccccccccCccc-cccccCeEECCCCccCCCC
Confidence            44677888888888888887776 6788888888888887654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.00  E-value=0.0013  Score=41.26  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             ccccchhhhhcchhhhhhHh---hHHHhcchhhhhhhccCCcccccC
Q psy10771         56 KEIGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE---~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      +.+.+|++++++.-.|..++   .++ -|++|+.|+|++|.|+.+++
T Consensus        62 ~~l~~L~~L~l~~N~i~~~~~~~~l~-~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSS
T ss_pred             ccccccCeEECCCCccCCCCCchhhc-CCCCCCEEECCCCcCCcCcc
Confidence            45678999999887776654   455 68899999999999987753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.00069  Score=44.27  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=21.2

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +..|+.++|+.-.|..|+.++ .|++|+.|+|++|.|+.+
T Consensus        40 l~~L~~L~Ls~N~i~~l~~~~-~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLDGFP-LLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             TTCCSEEECCSSCCCEECCCC-CCSSCCEEECCSSCCCEE
T ss_pred             cccCCEEECCCCCCCccCCcc-cCcchhhhhcccccccCC
Confidence            445555555555555555554 455555555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.39  E-value=0.0018  Score=42.56  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      .+++|+++++..-+|..++.++ .|++|+.|+|.+|.|..+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~-~l~~L~~L~ls~n~i~~~   78 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQ-YLNNLIGLELKDNQITDL   78 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             HcCCcCEEECCCCCCCcchhHh-cCCCCcEeecCCceeecc
Confidence            3566777777777777776666 677777777777766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.34  E-value=0.0019  Score=43.56  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             cccchhhhhcchhhhhhH-hhHHHhcchhhhhhhccCCcccccC
Q psy10771         57 EIGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLGK   99 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkI-E~L~~~CRnLkILYLQNNlIskIEN   99 (100)
                      .+.+|+++.|+.-.|..| +.+. .|++|+.|+|++|.|+.|+.
T Consensus       217 ~l~~L~~L~L~~N~L~~lp~~l~-~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             GSTTCCEEECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCCCT
T ss_pred             ccccceeeecccccccccccccc-cccCCCEEECCCCccCccCh
Confidence            357889999988888888 4566 58999999999999988854

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.76  E-value=0.0036  Score=41.26  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~-~l~~L~~L~l~~n~i~~l~  106 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLA-NLKNLGWLFLDENKVKDLS  106 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCGG
T ss_pred             hhCCCCCEEeCCCccccCccccc-cCccccccccccccccccc
Confidence            34667888888777777777665 6777888888888776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.52  E-value=0.0041  Score=41.90  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=34.5

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+.+|++++|+.=+|+.+..++ -|++|+.|+|.+|.|+.+
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~l~-~L~~L~~L~L~~n~i~~i  103 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADI  103 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCEEeCcCCcCCCCcccc-CCcccccccccccccccc
Confidence            46788999999998888887777 688999999999988765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=92.77  E-value=0.0022  Score=42.89  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=16.6

Q ss_pred             chhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcc
Q psy10771         60 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        60 tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIs   95 (100)
                      +|++++++.-.|..|+.+. .|++|+.|+|++|.|+
T Consensus        94 ~L~~L~l~~N~i~~l~~~~-~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_          94 TLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HCCEEECSEEECCCHHHHH-HHHHSSEEEESEEECC
T ss_pred             ccccccccccccccccccc-ccccccccccccchhc
Confidence            3444444444444444443 3444555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=91.69  E-value=0.0098  Score=38.61  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+.+|+.++|+.-.|..+..++ .|++|+.|++.+|.+..++
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~l~-~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCCG
T ss_pred             ccCCCcCcCccccccccCccccc-CCccccccccccccccccc
Confidence            34667777777777776666665 6777777777777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.026  Score=37.87  Aligned_cols=64  Identities=19%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             eeccceehhhHHhHHHHHhhcccccccccchhhhhcchhhhh-----hHh-hHHHhcchhhhhhhccCCcc
Q psy10771         31 KLKKLSLFWTTVSEDLVRKRAEHNDKEIGTLEEIALHQEHIE-----KIE-ALDKWCKHLRILLLHSNIIS   95 (100)
Q Consensus        31 ~~~~~~~~MvrIT~eLIRKraEHNe~~L~tLEElsLHQq~IE-----kIE-~L~~~CRnLkILYLQNNlIs   95 (100)
                      .|+.|.+-.-.||.+=+..=++.-.....+|++++|+.-+|.     .|. .|. .|++|+.|+|++|.|+
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLG  410 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCC
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh-cCCCCCEEECCCCcCC
Confidence            355565555556543222222211111245777777765553     332 233 5888888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.01  Score=38.20  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             ccchhhhhcchhhhhhHh-hHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE-~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +..|++++|+.-.|..|+ ..-...++|+.|+|++|.|+.+
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred             ccccCcceeeccccCCcccccccccccccceeccCCCCccc
Confidence            567777777777777774 2222667777777777777655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.066  Score=34.19  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=29.4

Q ss_pred             hhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccccc
Q psy10771         61 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        61 LEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +..+++....+..+..+...|++|+.|+|++|.|+.+.
T Consensus        44 ~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~   81 (162)
T d1koha1          44 DVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLD   81 (162)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCS
T ss_pred             hhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCc
Confidence            33445556666777777778999999999999998774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=0.03  Score=35.94  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             ccchhhhhcc-hhhhhhHh--hHHHhcchhhhhhhccCCccccc
Q psy10771         58 IGTLEEIALH-QEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        58 L~tLEElsLH-Qq~IEkIE--~L~~~CRnLkILYLQNNlIskIE   98 (100)
                      +.+|++|++. +..|+.|.  .+. ..++|+.|+|.+|.|+.|+
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred             ccccCeeecCCCccccccCchhhc-cccccCcceeeccccCCcc
Confidence            3456666663 33466654  233 3556666666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=83.70  E-value=0.052  Score=35.42  Aligned_cols=17  Identities=18%  Similarity=0.272  Sum_probs=9.9

Q ss_pred             cchhhhhhhccCCcccc
Q psy10771         81 CKHLRILLLHSNIISKL   97 (100)
Q Consensus        81 CRnLkILYLQNNlIskI   97 (100)
                      +.+|+.|+|++|.|+++
T Consensus       323 ~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         323 PQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             CTTCCEEECCSSCCSSC
T ss_pred             cCCCCEEECcCCcCCCC
Confidence            45566666666665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.057  Score=36.10  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=25.6

Q ss_pred             cccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCccc
Q psy10771         57 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   96 (100)
Q Consensus        57 ~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIsk   96 (100)
                      .+.+|++|+|+.=+|..|+..+ .+++|+.|+|.+|.|..
T Consensus        53 ~l~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTKLQVDG-TLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             TCTTCCEEECTTSCCCEEECCS-CCTTCCEEECCSSCCSS
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccc
Confidence            3566777777776666665544 56777777777776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=0.038  Score=37.01  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=24.4

Q ss_pred             ccccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+.+|++++|+.-.+..+...-...++|+.|+|.+|.+..+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccee
Confidence            345666666666655555443333556666666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=82.74  E-value=0.036  Score=36.22  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=18.1

Q ss_pred             ccchhhhhcchhhhhhHhhHHHhcchhhhhhhccCCcccc
Q psy10771         58 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   97 (100)
Q Consensus        58 L~tLEElsLHQq~IEkIE~L~~~CRnLkILYLQNNlIskI   97 (100)
                      +.+|++++|+.-+|..|..   ...+|+.|++++|.|+.|
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~l   93 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKAL   93 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCC
T ss_pred             CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccchh
Confidence            3455555555544444321   233555555555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.54  E-value=0.061  Score=34.47  Aligned_cols=42  Identities=24%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             ccccchhhhhcchhhhhhHhh--HHHhcchhhhhhhccCCccccc
Q psy10771         56 KEIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG   98 (100)
Q Consensus        56 ~~L~tLEElsLHQq~IEkIE~--L~~~CRnLkILYLQNNlIskIE   98 (100)
                      ..+.+|++++|+.=.|..|..  ++ -.++|+.|+|++|.|+.|.
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~-~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCEEC
T ss_pred             ccccccceeeeccccccccCHHHHh-CCCcccccccCCccccccC
Confidence            345677778887777777742  33 4577788888888887764