Psyllid ID: psy10772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MEISRTHRSLYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEcccccccccEEEEEEcccEEEEEEEEccccccccccEEEEEEEEEccccccccccccccccEEEHHEccccccccccccccEEcEEEEEcccccEEEEEEEcccccccccEEEEEcHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEEEEEcccccccccccHHHHcccccccccEEcccccEEEccccEEEEEEEEcccccEEcccccEEEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccHHHHcccccccccccccEcccccHHHccccEEEEEEcccEEEEEEEEEEEEccccccEEEHHHHHEEccccccHHHHHHHHHHHHHHHEEccccccccccHHHHHHHHcccccccEEEEEEEcccccccccEEEEEcHHHHHHHHcccccHcccccccEEEccccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEEcEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEEEEccccccccccEEEEEEEEEEEEEEEEccccccccEEEEEccHccccEEEEEEEcccccEEEEEccccEEEEccccEEEEEEEccccccccccccccEEEEEEEEEccHHccccccccc
Coil and Loop (DISEMBL)
meisrthrslyvasDERIKQIALVMCAHrydnclqpdfvgsydigkYVFFFFRETAVEYINCGKSVFSRVARVCkrdtggknilsQNWATYLKARLncsipgefpfyfnEIQDiykvpgddtkfygvfttsttglmgsaicsFSIEDIERAFVGKfkeqatstsawlpvlssrvpeprpgqcvndtetlpdsVLNFirshplmdeavahrdnkpvfyrrDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLqdvsntsdsicessvGRLKQTVTWGQSVHLScfvklpasmanqpmswyhyskdkgryqikfrsdkfirtvdgGLVIMAVEELdagkydcwlgntvlcthnltvdahsnvadaptrl
Flexible Loop (DISEMBL)
meisrthrslyvasdeRIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKrdtggknilsqnWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQAtstsawlpvlssrvpeprPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQdvsntsdsicessvGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNltvdahsnvadaptrl
Low Complexity Region (SEG)
MEISRTHRSLYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTRL
Disordered region (IsUnstruct)
*********LYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVL*****************TLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDA***********
Disordered Region (DISOPRED)
******************KQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG*******************VPEPRPG*CV****TLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQ************************QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLV**************WLGNTVLCTHNLTVDAHSNV****TRL
Disordered Region (DISEMBL)
********SLYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTRL
Disordered Region (DISPRO)
MEISRTHRSLYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVAD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEISRTHRSLYVASDERIKQIALVMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9XZC8	697	Semaphorin-2A OS=Schistoc	N/A	N/A	0.571	0.309	0.751	1e-97
Q24323	724	Semaphorin-2A OS=Drosophi	yes	N/A	0.574	0.299	0.689	2e-92
Q26473	730	Semaphorin-1A OS=Schistoc	N/A	N/A	0.626	0.324	0.473	3e-58
Q24322	850	Semaphorin-1A OS=Drosophi	no	N/A	0.560	0.249	0.490	2e-56
Q26972	712	Semaphorin-1A OS=Triboliu	N/A	N/A	0.510	0.271	0.532	1e-54
Q8NFY4	1073	Semaphorin-6D OS=Homo sap	yes	N/A	0.560	0.197	0.431	1e-46
Q5R7F5	1017	Semaphorin-6D OS=Pongo ab	yes	N/A	0.555	0.206	0.436	1e-46
Q76KF0	1073	Semaphorin-6D OS=Mus musc	no	N/A	0.560	0.197	0.431	1e-46
O35464	1031	Semaphorin-6A OS=Mus musc	no	N/A	0.513	0.188	0.454	2e-46
Q9H2E6	1030	Semaphorin-6A OS=Homo sap	no	N/A	0.518	0.190	0.450	2e-46

>sp|Q9XZC8|SEM2A_SCHGR Semaphorin-2A OS=Schistocerca gregaria GN=SEMA-2A PE=2 SV=1

 Score =  357 bits (915), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 190/217 (87%), Gaps = 1/217 (0%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
            P+FVGS+D+G+YV FFFRETAVEYINCGKSV+SRVARVCK+D GGKNILSQNWAT+LKA
Sbjct: 221 NPNFVGSFDVGEYVLFFFRETAVEYINCGKSVYSRVARVCKKDVGGKNILSQNWATFLKA 280

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ +YK+P  D KF+GVF+TS TGL GSAICSF+++DI+  F G
Sbjct: 281 RLNCSIPGEFPFYFNEIQGVYKMPNTD-KFFGVFSTSVTGLTGSAICSFTLKDIQEVFSG 339

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS+SAWLPVL SRVP+PRPG+CVNDTE LPD+VLNFIRSHPLMD AV+H   KP
Sbjct: 340 KFKEQATSSSAWLPVLPSRVPDPRPGECVNDTELLPDTVLNFIRSHPLMDGAVSHEGGKP 399

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
           VFY+RD+LFT LVVD ++  + G   EYIVY+A T+T
Sbjct: 400 VFYKRDVLFTQLVVDKLKVNLVGKNMEYIVYYAGTST 436

Acts as chemorepulsive guidance molecule critical for axon fasciculation and for determining both the initial direction and subsequent pathfinding events of the Ti axon projection.
Schistocerca gregaria (taxid: 7010)

>sp|Q24323|SEM2A_DROME Semaphorin-2A OS=Drosophila melanogaster GN=Sema-2a PE=1 SV=2

 Score =  339 bits (870), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 151/219 (68%), Positives = 185/219 (84%), Gaps = 2/219 (0%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG+YV+FFFRETAVEYINCGK+V+SR+ARVCK+D GGKN+L+ NWATYLKA
Sbjct: 252 KPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKA 311

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSI GEFPFYFNEIQ +Y++P D ++F+  FTTST GL+GSA+CSF I +I+ AF G
Sbjct: 312 RLNCSISGEFPFYFNEIQSVYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNG 371

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQ++S SAWLPVL+SRVPEPRPG CVNDT  LPD+VLNFIRSHPLMD+AV H  N P
Sbjct: 372 KFKEQSSSNSAWLPVLNSRVPEPRPGTCVNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNP 431

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
           V+Y+RDL+FT LVVD ++ ++     EYIVY+  T   R
Sbjct: 432 VYYKRDLVFTKLVVDKIRIDIL--NQEYIVYYVGTNLGR 468

Plays a role in growth cones guidance. Required for both proper adult behavior and survival. Can function in vivo as a selective target-derived signal that inhibits the formation of specific synaptic terminal arbors.

Drosophila melanogaster (taxid: 7227)

>sp|Q26473|SEM1A_SCHAM Semaphorin-1A OS=Schistocerca americana GN=SEMA-1A PE=1 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 150/243 (61%), Gaps = 6/243 (2%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
           P+FV + +   ++FFFFRETAVEYINCGK+++SRVARVCK D GG +     W ++LK+R
Sbjct: 206 PNFVNTMEYNDFIFFFFRETAVEYINCGKAIYSRVARVCKHDKGGPHQFGDRWTSFLKSR 265

Query: 96  LNCSIPGEFPFYFNEIQDIYKV-----PGDDTKF-YGVFTTSTTGLMGSAICSFSIEDIE 149
           LNCS+PG++PFYFNEIQ    +      G   K  YGVFTT    + GSA+C+FS++ I 
Sbjct: 266 LNCSVPGDYPFYFNEIQSTSDIIEGNYGGQVEKLIYGVFTTPVNSIGGSAVCAFSMKSIL 325

Query: 150 RAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAH 209
            +F G FKEQ T  S WL V S +VPEPRPGQCVND+ TLPD  +NF++SH LMDEAV  
Sbjct: 326 ESFDGPFKEQETMNSNWLAVPSLKVPEPRPGQCVNDSRTLPDVSVNFVKSHTLMDEAVPA 385

Query: 210 RDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTS 269
              +P+  R  L +    + V Q         Y V F  T   + +        D S+T 
Sbjct: 386 FFTRPILIRISLQYRFTKIAVDQQVRTPDGKAYDVLFIGTDDGKVIKALNSASFDSSDTV 445

Query: 270 DSI 272
           DS+
Sbjct: 446 DSV 448

Plays a role in growth cones guidance.

Schistocerca americana (taxid: 7009)

>sp|Q24322|SEM1A_DROME Semaphorin-1A OS=Drosophila melanogaster GN=Sema-1a PE=2 SV=2

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 143/222 (64%), Gaps = 10/222 (4%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
           P+FV S+  G +V+FFFRETAVE+INCGK+++SRVARVCK D GG +     W ++LK+R
Sbjct: 201 PNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSR 260

Query: 96  LNCSIPGEFPFYFNEIQDIYK-VPGD-----DTKFYGVFTTSTTGLMGSAICSFSIEDIE 149
           LNCSIPG++PFYFNEIQ     V G          YGVF T +  + GSA+C+F+++DI 
Sbjct: 261 LNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIA 320

Query: 150 RAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAH 209
             F G+FKEQ    S WLPV +++VP+PRPG C ND+  LPD  LNFI++H LMDE V  
Sbjct: 321 DTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRALPDPTLNFIKTHSLMDENVPA 380

Query: 210 RDNKPVFYRRDLL--FTHLVVDVVQYEVFGTTSEYIVYFAAT 249
             ++P+  R   +  FT + VD       G T  Y V F  T
Sbjct: 381 FFSQPILVRTSTIYRFTQIAVDAQIKTPGGKT--YDVIFVGT 420

Plays a role in growth cones guidance.

Drosophila melanogaster (taxid: 7227)

>sp|Q26972|SEM1A_TRICF Semaphorin-1A OS=Tribolium confusum GN=SEMA-1A PE=2 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 132/203 (65%), Gaps = 10/203 (4%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
           P+FV S   G Y+FFF+RETAVEY+NCGK ++SRVARVCK D GG +     W ++LKAR
Sbjct: 204 PNFVNSVAYGDYIFFFYRETAVEYMNCGKVIYSRVARVCKDDKGGPHQSRDRWTSFLKAR 263

Query: 96  LNCSIPGEFPFYFNEIQDIYKV-----PGDDTK--FYGVFTTSTTGLMGSAICSFSIEDI 148
           LNCSIPGE+PFYF+EIQ    +       DD+K   YG+ TT    + GSAIC++ + DI
Sbjct: 264 LNCSIPGEYPFYFDEIQSTSDIVEGRYNSDDSKKIIYGILTTPVNAIGGSAICAYQMADI 323

Query: 149 ERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVA 208
            R F G FK Q T  S WLPV  + VPEPRPGQCV D+  LPD  +NFI++H LM E V 
Sbjct: 324 LRVFEGSFKHQETINSNWLPVPQNLVPEPRPGQCVRDSRILPDKNVNFIKTHSLM-EDVP 382

Query: 209 HRDNKPVFYRRDLL--FTHLVVD 229
               KPV  R  L   FT + VD
Sbjct: 383 ALFGKPVLVRVSLQYRFTAITVD 405

Plays a role in growth cones guidance.

Tribolium confusum (taxid: 7071)

>sp|Q8NFY4|SEM6D_HUMAN Semaphorin-6D OS=Homo sapiens GN=SEMA6D PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/227 (43%), Positives = 138/227 (60%), Gaps = 15/227 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L ++W ++LK
Sbjct: 220 EPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLK 279

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+FS++DIE+
Sbjct: 280 ARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCAFSMDDIEK 338

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ T  S W  V   +VP+PRPG C           +   PD  L+FI+SHPL
Sbjct: 339 VFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPL 398

Query: 203 MDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
           MD AV    ++P F +  + +    + V      G    Y V F  +
Sbjct: 399 MDSAVPPIADEPWFTKTRVRYRLTAISVDHSA--GPYQNYTVIFVGS 443

Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections.

Homo sapiens (taxid: 9606)

>sp|Q5R7F5|SEM6D_PONAB Semaphorin-6D OS=Pongo abelii GN=SEMA6D PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 19/229 (8%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L ++W ++LK
Sbjct: 220 EPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLK 279

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+FS++DIE+
Sbjct: 280 ARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCAFSMDDIEK 338

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ T  S W  V   +VP+PRPG C           +   PD  L+FI+SHPL
Sbjct: 339 VFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPL 398

Query: 203 MDEAVAHRDNKPVFYRRDLLF--THLVVDVVQYEVFGTTSEYIVYFAAT 249
           MD AV    ++P F +  + +  T + VD       G    Y V F  +
Sbjct: 399 MDSAVPPIADEPWFTKTRVRYRLTAIAVD----HSAGPYQNYTVIFVGS 443

Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections.

Pongo abelii (taxid: 9601)

>sp|Q76KF0|SEM6D_MOUSE Semaphorin-6D OS=Mus musculus GN=Sema6d PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/227 (43%), Positives = 139/227 (61%), Gaps = 15/227 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L ++W ++LK
Sbjct: 220 EPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLK 279

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+FS++DIE+
Sbjct: 280 ARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCAFSMDDIEK 338

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ T  S W  V   +VP+PRPG C           +   PD  L FI+SHPL
Sbjct: 339 VFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTLAFIKSHPL 398

Query: 203 MDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
           MD AV    ++P F +  + +    ++V +    G    Y V F  +
Sbjct: 399 MDSAVPPIADEPWFTKTRVRYRLTAIEVDRSA--GPYQNYTVIFVGS 443

Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections.

Mus musculus (taxid: 10090)

>sp|O35464|SEM6A_MOUSE Semaphorin-6A OS=Mus musculus GN=Sema6a PE=1 SV=2

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 127/209 (60%), Gaps = 15/209 (7%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY   GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 219 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 278

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   D+ ++ G D      F+T    + GSA+C++ + DI  
Sbjct: 279 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDV-VLATFSTPYNSIPGSAVCAYDMLDIAN 337

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ +  S W PV   RVP+PRPG C           +   PD  LNFI++HPL
Sbjct: 338 VFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPL 397

Query: 203 MDEAVAHRDNKPVFYRRDLLF--THLVVD 229
           MDEAV    N+P F R  + +  T + VD
Sbjct: 398 MDEAVPSIINRPWFLRTMVRYRLTKIAVD 426

Cell surface receptor for PLXNA2 that plays an important role in cell-cell signaling. Required for normal granule cell migration in the developing cerebellum. Promotes reorganization of the actin cytoskeleton and plays an important role in axon guidance in the developing central nervous system. Can act as repulsive axon guidance cue. Has repulsive action towards migrating granular neurons. May play a role in channeling sympathetic axons into the sympathetic chains and controlling the temporal sequence of sympathetic target innervation.

Mus musculus (taxid: 10090)

>sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens GN=SEMA6A PE=1 SV=2

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 127/211 (60%), Gaps = 15/211 (7%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY   GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 219 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 278

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   D+ ++ G D      F+T    + GSA+C++ + DI  
Sbjct: 279 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDV-VLATFSTPYNSIPGSAVCAYDMLDIAS 337

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ +  S W PV   RVP+PRPG C           +   PD  LNFI++HPL
Sbjct: 338 VFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLERYATSNEFPDDTLNFIKTHPL 397

Query: 203 MDEAVAHRDNKPVFYRRDLLF--THLVVDVV 231
           MDEAV    N+P F R  + +  T + VD  
Sbjct: 398 MDEAVPSIFNRPWFLRTMVRYRLTKIAVDTA 428

Cell surface receptor for PLXNA2 that plays an important role in cell-cell signaling. Required for normal granule cell migration in the developing cerebellum. Promotes reorganization of the actin cytoskeleton and plays an important role in axon guidance in the developing central nervous system. Can act as repulsive axon guidance cue. Has repulsive action towards migrating granular neurons. May play a role in channeling sympathetic axons into the sympathetic chains and controlling the temporal sequence of sympathetic target innervation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
308222732	435	semaphorin 2a [Gryllus bimaculatus]	0.637	0.554	0.738	1e-102
322787454	479	hypothetical protein SINV_06809 [Solenop	0.772	0.609	0.580	1e-102
328703580	704	PREDICTED: semaphorin-2A-like [Acyrthosi	0.576	0.309	0.831	1e-102
195150031	658	GL10746 [Drosophila persimilis] gi|19410	0.857	0.492	0.520	1e-101
91077764	724	PREDICTED: similar to semaphorin 2a [Tri	0.619	0.323	0.748	1e-101
270002844	787	semaphorin-2a [Tribolium castaneum]	0.619	0.297	0.748	1e-101
242013140	693	Semaphorin-2A precursor, putative [Pedic	0.568	0.310	0.768	1e-101
212283364	716	semaphorin 2a [Polyrhachis vicina]	0.616	0.325	0.729	1e-100
357610886	631	putative semaphorin 2a [Danaus plexippus	0.568	0.340	0.768	1e-100
345497365	724	PREDICTED: semaphorin-2A-like [Nasonia v	0.568	0.296	0.776	1e-100

>gi|308222732|gb|ABK35089.2| semaphorin 2a [Gryllus bimaculatus]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/241 (73%), Positives = 203/241 (84%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGSYDIG+YV FFFRETAVEYINCGKSV+SRVARVCK+DTGGKNILSQNWATYLKA
Sbjct: 195 KPNFVGSYDIGQYVLFFFRETAVEYINCGKSVYSRVARVCKKDTGGKNILSQNWATYLKA 254

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ +YKVPGDDT+FYGVFTTS TGL+GSAIC F++ DI+ AF G
Sbjct: 255 RLNCSIPGEFPFYFNEIQSVYKVPGDDTRFYGVFTTSMTGLVGSAICVFTLRDIQEAFRG 314

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS SAWLPVLSSRVPEPRPG CVNDTETLPD+VLNFIRSHPLMD AVAH   KP
Sbjct: 315 KFKEQATSASAWLPVLSSRVPEPRPGDCVNDTETLPDTVLNFIRSHPLMDAAVAHEHGKP 374

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICE 274
           VF++RDLLFT LVVD ++ ++  +  EYIVY+A T   R   V     +D  ++   + +
Sbjct: 375 VFFKRDLLFTDLVVDRLKIDLIASIKEYIVYYAGTNNGRVYKVVQWYDEDAEDSRSRLLD 434

Query: 275 S 275
           S
Sbjct: 435 S 435

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787454|gb|EFZ13542.1| hypothetical protein SINV_06809 [Solenopsis invicta]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/334 (58%), Positives = 232/334 (69%), Gaps = 42/334 (12%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGSYDIG +VFFFFRETAVEYINCGKSV+SRVARVCKRDTGGKNIL+QNWATYLKA
Sbjct: 6   EPNFVGSYDIGSHVFFFFRETAVEYINCGKSVYSRVARVCKRDTGGKNILAQNWATYLKA 65

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDDT FYG FTTST GLMGSAICSF I+ I+ AF G
Sbjct: 66  RLNCSIPGEFPFYFNEIQSIYKVPGDDTHFYGTFTTSTNGLMGSAICSFHIDAIQEAFRG 125

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS+SAWLPVLS++VPEPRPGQCVNDTETLPD+VLNFIRSHPLMD A++H + KP
Sbjct: 126 KFKEQATSSSAWLPVLSNKVPEPRPGQCVNDTETLPDTVLNFIRSHPLMDSAISHENEKP 185

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICE 274
           VFY+RD++ T LVVD ++ +  G   +Y VY+A ++            Q + NT D    
Sbjct: 186 VFYKRDVMLTRLVVDKLRIDFVGIDLDYTVYYAGSSK-----------QTILNTCD---- 230

Query: 275 SSVGRLKQTVTW------GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF 328
              GR+ + V W       QS+ L  F   P     +P+     SK+     +   SD  
Sbjct: 231 ---GRVHKVVQWIDSNGDSQSILLDVFDVTPG----EPIQAMEISKEHKALYVA--SDHR 281

Query: 329 IRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHN 362
           I+ +D   ++M     D         N + C H+
Sbjct: 282 IKQID---LVMCTRRYD---------NCLRCVHD 303

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328703580|ref|XP_001948405.2| PREDICTED: semaphorin-2A-like [Acyrthosiphon pisum]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/219 (83%), Positives = 199/219 (90%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +PDFVGSYDIG+YVFFFFRETAVEYINCGKS+FSRVARVCK+DTGGK+ILS NWATYLKA
Sbjct: 224 KPDFVGSYDIGQYVFFFFRETAVEYINCGKSIFSRVARVCKKDTGGKSILSHNWATYLKA 283

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGE+PFYFNEIQ IYKVP DDT FYGVFTTSTTGLMGSAIC+F +EDI+ AF G
Sbjct: 284 RLNCSIPGEYPFYFNEIQSIYKVPDDDTLFYGVFTTSTTGLMGSAICTFRLEDIDHAFAG 343

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           +FKEQA+STSAWLPVLS++VPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAH+DN+P
Sbjct: 344 RFKEQASSTSAWLPVLSTKVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHKDNEP 403

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
           VFY RDL FT LVVDV+ Y VFG    Y VY+AAT   R
Sbjct: 404 VFYLRDLFFTRLVVDVLDYVVFGNHLHYTVYYAATNEGR 442

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150031|ref|XP_002015958.1| GL10746 [Drosophila persimilis] gi|194109805|gb|EDW31848.1| GL10746 [Drosophila persimilis]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/359 (52%), Positives = 245/359 (68%), Gaps = 35/359 (9%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG YV+FFFRETAVEYINCGK+V+SR+ARVCK+D GGKN+L+ NWATYLKA
Sbjct: 250 KPNFVGSFDIGDYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKA 309

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSI GEFPFYFNEIQ +Y++P D T+FY  FTTST GL+GSA+CSF I +I+ AF G
Sbjct: 310 RLNCSISGEFPFYFNEIQSVYQLPSDKTRFYATFTTSTNGLIGSAVCSFHINEIQAAFNG 369

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQ++S SAWLPVL+SRVPEPRPG CVNDT  LPD+VLNFIRSHPLMD+AV H  N P
Sbjct: 370 KFKEQSSSNSAWLPVLNSRVPEPRPGTCVNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNP 429

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV----------------- 257
           V+Y+RDL+FT LVVD ++ ++     EYIVY+  T   R   +                 
Sbjct: 430 VYYKRDLVFTKLVVDKIKIDIL--NQEYIVYYVGTNLGRIYKIVQYYRNGESLSKLLDIF 487

Query: 258 -----KVRLLQDVSNTSDSICESSVGRLKQT-VTWGQSVHLSCF--VKLPASMANQPMSW 309
                +   + ++S T  S+   +  R+KQ  +      + +CF  V+ P         W
Sbjct: 488 EVAPNEAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRCVRDPY------CGW 541

Query: 310 YHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAH 368
              +     Y++     ++I T + GLV+++V E D G+YDC LG ++LC++N+TVDAH
Sbjct: 542 DKEANTCRPYELDLL--QYIETTERGLVVVSVNEADGGRYDCHLGGSLLCSYNITVDAH 598

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077764|ref|XP_968340.1| PREDICTED: similar to semaphorin 2a [Tribolium castaneum]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/235 (74%), Positives = 200/235 (85%), Gaps = 1/235 (0%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG YV FFFRETAVEYINCGKSV+SRVARVCK+DTGGKNILSQNWATYLKA
Sbjct: 249 KPNFVGSFDIGDYVLFFFRETAVEYINCGKSVYSRVARVCKKDTGGKNILSQNWATYLKA 308

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDDTKFYG FTTST GLMGSAICSF+++DI++AF G
Sbjct: 309 RLNCSIPGEFPFYFNEIQSIYKVPGDDTKFYGTFTTSTNGLMGSAICSFTLDDIQQAFSG 368

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQA+S+SAWLPVLS+RVPEPRPG CVNDTETLPD+VLNFIRSHPLMD AV H   KP
Sbjct: 369 KFKEQASSSSAWLPVLSNRVPEPRPGTCVNDTETLPDTVLNFIRSHPLMDSAVMHEHEKP 428

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTS 269
           VF++RD+ FT LVVD ++ ++ G   +Y VY+A T   R V   V   +D   TS
Sbjct: 429 VFFKRDVFFTRLVVDKIKVDIGGAVLDYTVYYAGTNEGR-VHKIVEWQRDTDGTS 482

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002844|gb|EEZ99291.1| semaphorin-2a [Tribolium castaneum]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/235 (74%), Positives = 200/235 (85%), Gaps = 1/235 (0%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG YV FFFRETAVEYINCGKSV+SRVARVCK+DTGGKNILSQNWATYLKA
Sbjct: 312 KPNFVGSFDIGDYVLFFFRETAVEYINCGKSVYSRVARVCKKDTGGKNILSQNWATYLKA 371

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDDTKFYG FTTST GLMGSAICSF+++DI++AF G
Sbjct: 372 RLNCSIPGEFPFYFNEIQSIYKVPGDDTKFYGTFTTSTNGLMGSAICSFTLDDIQQAFSG 431

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQA+S+SAWLPVLS+RVPEPRPG CVNDTETLPD+VLNFIRSHPLMD AV H   KP
Sbjct: 432 KFKEQASSSSAWLPVLSNRVPEPRPGTCVNDTETLPDTVLNFIRSHPLMDSAVMHEHEKP 491

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTS 269
           VF++RD+ FT LVVD ++ ++ G   +Y VY+A T   R V   V   +D   TS
Sbjct: 492 VFFKRDVFFTRLVVDKIKVDIGGAVLDYTVYYAGTNEGR-VHKIVEWQRDTDGTS 545

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013140|ref|XP_002427273.1| Semaphorin-2A precursor, putative [Pediculus humanus corporis] gi|212511606|gb|EEB14535.1| Semaphorin-2A precursor, putative [Pediculus humanus corporis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 166/216 (76%), Positives = 200/216 (92%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGSYD+G+YV FFFRETAVEYINCGKS++SRVARVCKRDTGGKNILSQNWATYLKA
Sbjct: 216 KPNFVGSYDVGEYVLFFFRETAVEYINCGKSIYSRVARVCKRDTGGKNILSQNWATYLKA 275

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ++YK+PGD+TKFYGVFTT+  GLMGSAICS+ I+DI +AF G
Sbjct: 276 RLNCSIPGEFPFYFNEIQNVYKIPGDNTKFYGVFTTNMNGLMGSAICSYDIKDIIKAFKG 335

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           +FKEQATS+SAWLPVLS++VPEPRPG+CVN+TETLPD+VLNFIRSHPLMDEAV H +++P
Sbjct: 336 RFKEQATSSSAWLPVLSNKVPEPRPGECVNNTETLPDTVLNFIRSHPLMDEAVRHENDRP 395

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATT 250
           VFY+RD+LFTH+VVD ++ +     SEY +++AAT+
Sbjct: 396 VFYKRDILFTHVVVDKIKIDSLVDQSEYTLFYAATS 431

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|212283364|gb|ACJ23177.1| semaphorin 2a [Polyrhachis vicina]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 202/237 (85%), Gaps = 4/237 (1%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGSYDIG +VFFFFRETAVEYINCGKSV+SRVARVCKRDTGGKNIL+QNWATYLKA
Sbjct: 236 KPNFVGSYDIGSHVFFFFRETAVEYINCGKSVYSRVARVCKRDTGGKNILAQNWATYLKA 295

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDDT FYG FTTST GLMGSAICSF I+ I+ AF G
Sbjct: 296 RLNCSIPGEFPFYFNEIQSIYKVPGDDTHFYGTFTTSTNGLMGSAICSFHIDAIQEAFRG 355

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS+SAWLPVLS++VPEPRPGQCVNDTETLPD+VLNFIRSHPLMD A++H + KP
Sbjct: 356 KFKEQATSSSAWLPVLSNKVPEPRPGQCVNDTETLPDTVLNFIRSHPLMDSAISHENEKP 415

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDS 271
           VFY+RD++ T LVVD ++ +  G   +Y VY+A ++  R      +++Q + N  +S
Sbjct: 416 VFYKRDVMLTRLVVDKLRIDFVGIDLDYTVYYAGSSDGRV----HKVVQWIDNNGES 468

Source: Polyrhachis vicina

Species: Polyrhachis vicina

Genus: Polyrhachis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610886|gb|EHJ67191.1| putative semaphorin 2a [Danaus plexippus]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/216 (76%), Positives = 196/216 (90%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+D+G+YV FFFRETAVEYINCGK+V+SRVAR+CK+DTGGKNILSQNWATYLKA
Sbjct: 208 KPNFVGSFDVGEYVLFFFRETAVEYINCGKAVYSRVARICKKDTGGKNILSQNWATYLKA 267

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDD++FYGVFTT++TGLMGSAIC+F+I DI++AF G
Sbjct: 268 RLNCSIPGEFPFYFNEIQSIYKVPGDDSRFYGVFTTASTGLMGSAICTFTIADIQKAFEG 327

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS+SAWLPV+SSRVPEPRPG+CVNDT +LPD+VLNFIRSHPLMD AV+H   KP
Sbjct: 328 KFKEQATSSSAWLPVISSRVPEPRPGKCVNDTSSLPDTVLNFIRSHPLMDSAVSHEHEKP 387

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATT 250
           ++Y+RDL FT LVVD V+ ++ G   EY VY+A T 
Sbjct: 388 IYYKRDLFFTRLVVDRVKVDMMGHPLEYTVYYAGTN 423

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497365|ref|XP_001599891.2| PREDICTED: semaphorin-2A-like [Nasonia vitripennis]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/219 (77%), Positives = 195/219 (89%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG++VFFFFRETAVEYINCGKSV+SRVARVCKRDTGGKNIL+QNWATYLKA
Sbjct: 244 KPNFVGSFDIGEHVFFFFRETAVEYINCGKSVYSRVARVCKRDTGGKNILAQNWATYLKA 303

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCSIPGEFPFYFNEIQ IYKVPGDDT FYG FTTST GLMGSAICSF I+ I+ AF G
Sbjct: 304 RLNCSIPGEFPFYFNEIQSIYKVPGDDTHFYGTFTTSTNGLMGSAICSFHIDAIQEAFRG 363

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           KFKEQATS+SAWLPVLS++VPEPRPGQCVNDTETLPD+VLNFIRSHPLMD A++H + KP
Sbjct: 364 KFKEQATSSSAWLPVLSNKVPEPRPGQCVNDTETLPDTVLNFIRSHPLMDSAISHENEKP 423

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
           VFY+RD++ T LVVD ++ +  G   EY VY+A ++  R
Sbjct: 424 VFYKRDVMLTRLVVDKLRIDSAGLDLEYTVYYAGSSDGR 462

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
FB|FBgn0011260	724	Sema-2a "Sema-2a" [Drosophila	0.563	0.294	0.697	4.6e-120
FB|FBgn0264273	785	Sema-2b "Semaphorin-2b" [Droso	0.584	0.281	0.675	1.3e-113
FB|FBgn0011259	850	Sema-1a "Sema-1a" [Drosophila	0.560	0.249	0.495	9.3e-53
FB|FBgn0016059	770	Sema-1b "Sema-1b" [Drosophila	0.624	0.306	0.454	8.6e-52
ZFIN|ZDB-GENE-040724-119	1064	sema6e "sema domain, transmemb	0.566	0.201	0.450	2.2e-45
UNIPROTKB|A6NM95	597	SEMA6D "Semaphorin-6D" [Homo s	0.576	0.365	0.434	4.4e-45
UNIPROTKB|I3LRN7	1027	SEMA6D "Uncharacterized protei	0.632	0.232	0.414	1.1e-44
UNIPROTKB|E1BNY3	1073	SEMA6D "Uncharacterized protei	0.632	0.222	0.414	1.3e-44
UNIPROTKB|F1SN61	1073	SEMA6D "Uncharacterized protei	0.632	0.222	0.414	1.3e-44
RGD|1310910	1073	Sema6d "sema domain, transmemb	0.632	0.222	0.410	2.1e-44

FB|FBgn0011260 Sema-2a "Sema-2a" [Drosophila melanogaster (taxid:7227)]

 Score = 850 (304.3 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
 Identities = 150/215 (69%), Positives = 184/215 (85%)

Query:    35 QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
             +P+FVGS+DIG+YV+FFFRETAVEYINCGK+V+SR+ARVCK+D GGKN+L+ NWATYLKA
Sbjct:   252 KPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKA 311

Query:    95 RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
             RLNCSI GEFPFYFNEIQ +Y++P D ++F+  FTTST GL+GSA+CSF I +I+ AF G
Sbjct:   312 RLNCSISGEFPFYFNEIQSVYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNG 371

Query:   155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
             KFKEQ++S SAWLPVL+SRVPEPRPG CVNDT  LPD+VLNFIRSHPLMD+AV H  N P
Sbjct:   372 KFKEQSSSNSAWLPVLNSRVPEPRPGTCVNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNP 431

Query:   215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
             V+Y+RDL+FT LVVD ++ ++     EYIVY+  T
Sbjct:   432 VYYKRDLVFTKLVVDKIRIDILN--QEYIVYYVGT 464

GO:0007629 "flight behavior" evidence=IMP

GO:0042756 "drinking behavior" evidence=IMP

GO:0030534 "adult behavior" evidence=NAS;IMP

GO:0007632 "visual behavior" evidence=IMP

GO:0005576 "extracellular region" evidence=ISS;NAS

GO:0007411 "axon guidance" evidence=NAS;IMP

GO:0016201 "synaptic target inhibition" evidence=NAS;IMP

GO:0007431 "salivary gland development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070983 "dendrite guidance" evidence=IGI

FB|FBgn0264273 Sema-2b "Semaphorin-2b" [Drosophila melanogaster (taxid:7227)]

 Score = 830 (297.2 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
 Identities = 152/225 (67%), Positives = 185/225 (82%)

Query:    29 RYDNCL--QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQ 86
             +YD+ L  +P+FVGS++IG++V+FFFRE AVEYINCGK+V+SRVARVCK D GGK ++SQ
Sbjct:   299 KYDSKLLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQ 358

Query:    87 NWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIE 146
             NWATYLKAR+NCSI  EFPFYFNEIQ +YK+P DDTKFY  FTT+T GL+GSA+CS+ I 
Sbjct:   359 NWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTKFYATFTTNTNGLIGSAVCSYDIR 418

Query:   147 DIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEA 206
             DI  AF GKFKEQATS SAWLPVL+S+VPEPRPG C NDT TLPDSVLNFIR HPLMD+A
Sbjct:   419 DINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIRKHPLMDKA 478

Query:   207 VAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
             V H    PVF++RD++ T LVVD ++ +      E++VYF ATT+
Sbjct:   479 VDHEFGNPVFFKRDVILTKLVVDKIRIDKLN--QEFLVYFVATTS 521

GO:0007411 "axon guidance" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0016200 "synaptic target attraction" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IGI

FB|FBgn0011259 Sema-1a "Sema-1a" [Drosophila melanogaster (taxid:7227)]

 Score = 551 (199.0 bits), Expect = 9.3e-53, P = 9.3e-53
 Identities = 110/222 (49%), Positives = 147/222 (66%)

Query:    36 PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
             P+FV S+  G +V+FFFRETAVE+INCGK+++SRVARVCK D GG +     W ++LK+R
Sbjct:   201 PNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSR 260

Query:    96 LNCSIPGEFPFYFNEIQDIYK-VPGD----DTKF-YGVFTTSTTGLMGSAICSFSIEDIE 149
             LNCSIPG++PFYFNEIQ     V G      +K  YGVF T +  + GSA+C+F+++DI 
Sbjct:   261 LNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIA 320

Query:   150 RAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAH 209
               F G+FKEQ    S WLPV +++VP+PRPG C ND+  LPD  LNFI++H LMDE V  
Sbjct:   321 DTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRALPDPTLNFIKTHSLMDENVPA 380

Query:   210 RDNKPVFYRRDLL--FTHLVVDVVQYEVFGTTSEYIVYFAAT 249
               ++P+  R   +  FT + VD  Q +  G  + Y V F  T
Sbjct:   381 FFSQPILVRTSTIYRFTQIAVDA-QIKTPGGKT-YDVIFVGT 420

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007411 "axon guidance" evidence=ISS;IDA;IMP;NAS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007416 "synapse assembly" evidence=IMP

GO:0030215 "semaphorin receptor binding" evidence=TAS

GO:0004872 "receptor activity" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:2000305 "semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance" evidence=IGI

GO:0045792 "negative regulation of cell size" evidence=IMP

FB|FBgn0016059 Sema-1b "Sema-1b" [Drosophila melanogaster (taxid:7227)]

 Score = 538 (194.4 bits), Expect = 8.6e-52, P = 8.6e-52
 Identities = 110/242 (45%), Positives = 152/242 (62%)

Query:    35 QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
             QPDFVG+ +   YV FFFRE ++E +N GK+V+SRVARVCK D GG     ++W ++LKA
Sbjct:   227 QPDFVGAIERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKA 286

Query:    95 RLNCSIPGEFPFYFNEIQDIYKV--PGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAF 152
             RLNCS+PGEFPFYF+EIQ I  +   G  +  Y VFTTS   + GSA+C+F+++DI  AF
Sbjct:   287 RLNCSVPGEFPFYFDEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAF 346

Query:   153 VGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDN 212
              G+FK Q  S S WLPV   +VP+PRPGQCV D+ TL    +NFI++HPLM+EAV     
Sbjct:   347 DGEFKSQKDSQSHWLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEAVPAVHG 406

Query:   213 KPVFYRRDLLFTHLVVDVVQYEVFGTTSEY--IVYFAATTTLRTVFVKVRLLQDVSNTSD 270
             +P+  + +L    L    V  +V   +  Y  ++Y        T F+ + L    ++T D
Sbjct:   407 RPLLTKVNL-HHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINI-LSTHPNSTVD 464

Query:   271 SI 272
              +
Sbjct:   465 RL 466

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0007411 "axon guidance" evidence=ISS

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IEP

GO:0004872 "receptor activity" evidence=IEA

ZFIN|ZDB-GENE-040724-119 sema6e "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E" [Danio rerio (taxid:7955)]

 Score = 487 (176.5 bits), Expect = 2.2e-45, P = 2.2e-45
 Identities = 105/233 (45%), Positives = 136/233 (58%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGK-NILS 85
             +YD+    +P F+ + + G YV+FF  E AVEY   GK VFSRVARVCK D GG   +L 
Sbjct:   221 KYDSKWLREPHFLHAIEYGNYVYFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLE 280

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTK--FYGVFTTSTTGLMGSAICSF 143
             + W ++LKARLNCS+PG+  FYF+ +Q +  V   + +    GVFTT    + GSA+C+F
Sbjct:   281 RYWTSFLKARLNCSVPGDSFFYFDVLQSLTNVMQINHRPAVLGVFTTQANSITGSAVCAF 340

Query:   144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLN 195
              ++DIE+ F GKFKEQ  S SAW PV    VP+PRPG C  D        +   PD  L 
Sbjct:   341 YMDDIEKVFNGKFKEQRNSESAWTPVPDEAVPKPRPGSCAGDGPAAGYKSSTNFPDETLT 400

Query:   196 FIRSHPLMDEAVAHRDNKPVFYRRDLLF--THLVVDVVQYEVFGTTSEYIVYF 246
             FI+S+PLMDEAV   +N+P F R    F  T + VD       G    Y V F
Sbjct:   401 FIKSYPLMDEAVPSVNNRPCFTRTTSRFKLTQIAVDTAA----GPYKNYTVVF 449

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A6NM95 SEMA6D "Semaphorin-6D" [Homo sapiens (taxid:9606)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 102/235 (43%), Positives = 143/235 (60%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILS 85
             +YD+    +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L 
Sbjct:   212 KYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLE 271

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICS 142
             ++W ++LKARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+
Sbjct:   272 KHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCA 330

Query:   143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--TET------LPDSVL 194
             FS++DIE+ F G+FKEQ T  S W  V   +VP+PRPG C      E        PD  L
Sbjct:   331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETL 390

Query:   195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
             +FI+SHPLMD AV    ++P F +  + +  L    V +   G    Y V F  +
Sbjct:   391 SFIKSHPLMDSAVPPIADEPWFTKTRVRY-RLTAISVDHSA-GPYQNYTVIFVGS 443

GO:0004872 "receptor activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LRN7 SEMA6D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 480 (174.0 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 107/258 (41%), Positives = 152/258 (58%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILS 85
             +YD+    +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L 
Sbjct:   212 KYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLE 271

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICS 142
             ++W ++LKARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+
Sbjct:   272 KHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCA 330

Query:   143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--TET------LPDSVL 194
             FS++DIE+ F G+FKEQ T  S W  V   +VP+PRPG C      E        PD  L
Sbjct:   331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETL 390

Query:   195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
             +FI+SHPLMD AV    ++P F +  + +  L    V +   G    Y V F  +     
Sbjct:   391 SFIKSHPLMDSAVPPIADEPWFTKTRIRY-RLTAIAVDHSA-GPHQNYTVIFVGSEA--G 446

Query:   255 VFVKVRLLQDVSNTSDSI 272
             V +KV       + +DS+
Sbjct:   447 VVLKVLAKTSPFSLNDSV 464

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

UNIPROTKB|E1BNY3 SEMA6D "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 107/258 (41%), Positives = 152/258 (58%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILS 85
             +YD+    +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L 
Sbjct:   212 KYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLE 271

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICS 142
             ++W ++LKARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+
Sbjct:   272 KHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCA 330

Query:   143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--TET------LPDSVL 194
             FS++DIE+ F G+FKEQ T  S W  V   +VP+PRPG C      E        PD  L
Sbjct:   331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETL 390

Query:   195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
             +FI+SHPLMD AV    ++P F +  + +  L    V +   G    Y V F  +     
Sbjct:   391 SFIKSHPLMDSAVPPIADEPWFTKTRIRY-RLTAIAVDHSA-GPHQNYTVIFVGSEA--G 446

Query:   255 VFVKVRLLQDVSNTSDSI 272
             V +KV       + +DS+
Sbjct:   447 VVLKVLAKTSPFSLNDSV 464

GO:0030215 "semaphorin receptor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

UNIPROTKB|F1SN61 SEMA6D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 480 (174.0 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 107/258 (41%), Positives = 152/258 (58%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILS 85
             +YD+    +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L 
Sbjct:   212 KYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLE 271

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICS 142
             ++W ++LKARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+
Sbjct:   272 KHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCA 330

Query:   143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--TET------LPDSVL 194
             FS++DIE+ F G+FKEQ T  S W  V   +VP+PRPG C      E        PD  L
Sbjct:   331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETL 390

Query:   195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
             +FI+SHPLMD AV    ++P F +  + +  L    V +   G    Y V F  +     
Sbjct:   391 SFIKSHPLMDSAVPPIADEPWFTKTRIRY-RLTAIAVDHSA-GPHQNYTVIFVGSEA--G 446

Query:   255 VFVKVRLLQDVSNTSDSI 272
             V +KV       + +DS+
Sbjct:   447 VVLKVLAKTSPFSLNDSV 464

GO:0030215 "semaphorin receptor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

RGD|1310910 Sema6d "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" [Rattus norvegicus (taxid:10116)]

 Score = 478 (173.3 bits), Expect = 2.1e-44, P = 2.1e-44
 Identities = 106/258 (41%), Positives = 153/258 (59%)

Query:    29 RYDN--CLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILS 85
             +YD+    +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L 
Sbjct:   212 KYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLE 271

Query:    86 QNWATYLKARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICS 142
             ++W ++LKARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+
Sbjct:   272 KHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVI-GVFTTQLNSIPGSAVCA 330

Query:   143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--TET------LPDSVL 194
             FS++DIE+ F G+FKEQ T  S W  V   +VP+PRPG C      E        PD  L
Sbjct:   331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTL 390

Query:   195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
             +FI+SHPLMD AV    ++P F +  + +    ++V +    G    Y V F  +     
Sbjct:   391 SFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAIEVDRSA--GPYQNYTVIFVGSEA--G 446

Query:   255 VFVKVRLLQDVSNTSDSI 272
             V +KV       + +DS+
Sbjct:   447 VVLKVLAKTSPFSLNDSV 464

GO:0004872 "receptor activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24323	SEM2A_DROME	No assigned EC number	0.6894	0.5740	0.2997	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	378
cd11238	452	cd11238, Sema_2A, The Sema domain, a protein inter	1e-130
cd11235	437	cd11235, Sema_semaphorin, The Sema domain, a prote	1e-100
cd11237	446	cd11237, Sema_1A, The Sema domain, a protein inter	1e-93
smart00630	390	smart00630, Sema, semaphorin domain	4e-87
pfam01403	435	pfam01403, Sema, Sema domain	2e-77
cd11242	465	cd11242, Sema_6, The Sema domain, a protein intera	8e-68
cd11241	438	cd11241, Sema_5, The Sema domain, a protein intera	6e-64
cd11265	433	cd11265, Sema_5C, The Sema domain, a protein inter	9e-62
cd11267	466	cd11267, Sema_6B, The Sema domain, a protein inter	1e-58
cd11240	456	cd11240, Sema_4, The Sema domain, a protein intera	2e-58
cd11269	465	cd11269, Sema_6D, The Sema domain, a protein inter	7e-58
cd11266	466	cd11266, Sema_6A, The Sema domain, a protein inter	1e-57
cd11263	436	cd11263, Sema_5A, The Sema domain, a protein inter	7e-57
cd11239	471	cd11239, Sema_3, The Sema domain, a protein intera	2e-56
cd11264	437	cd11264, Sema_5B, The Sema domain, a protein inter	5e-56
cd11268	465	cd11268, Sema_6C, The Sema domain, a protein inter	2e-53
cd11270	462	cd11270, Sema_6E, The Sema domain, a protein inter	4e-53
cd11252	474	cd11252, Sema_3D, The Sema domain, a protein inter	2e-47
cd11250	471	cd11250, Sema_3B, The Sema domain, a protein inter	6e-47
cd11262	457	cd11262, Sema_4G, The Sema domain, a protein inter	1e-46
cd11257	464	cd11257, Sema_4B, The Sema domain, a protein inter	7e-46
cd11256	447	cd11256, Sema_4A, The Sema domain, a protein inter	3e-45
cd11260	456	cd11260, Sema_4E, The Sema domain, a protein inter	4e-45
cd11261	460	cd11261, Sema_4F, The Sema domain, a protein inter	1e-44
cd11249	493	cd11249, Sema_3A, The Sema domain, a protein inter	2e-44
cd11258	458	cd11258, Sema_4C, The Sema domain, a protein inter	6e-44
cd11259	471	cd11259, Sema_4D, The Sema domain, a protein inter	7e-44
cd11254	470	cd11254, Sema_3F, The Sema domain, a protein inter	3e-42
cd11253	471	cd11253, Sema_3E, The Sema domain, a protein inter	2e-40
cd11255	474	cd11255, Sema_3G, The Sema domain, a protein inter	7e-37
cd11251	470	cd11251, Sema_3C, The Sema domain, a protein inter	2e-35
cd11243	414	cd11243, Sema_7A, The Sema domain, a protein inter	8e-31
cd09295	392	cd09295, Sema, The Sema domain, a protein interact	1e-19
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	2e-08
cd11276	449	cd11276, Sema_plexin_B2, The Sema domain, a protei	7e-06
cd11245	440	cd11245, Sema_plexin_B, The Sema domain, a protein	1e-05
cd11236	401	cd11236, Sema_plexin_like, The Sema domain, a prot	3e-04
cd11277	434	cd11277, Sema_plexin_B3, The Sema domain, a protei	0.001

>gnl|CDD|200499 cd11238, Sema_2A, The Sema domain, a protein interacting module, of semaphorin 2A (Sema2A)

 Score =  382 bits (982), Expect = e-130
 Identities = 147/221 (66%), Positives = 178/221 (80%), Gaps = 8/221 (3%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGS+DIG YV+FFFRETAVEYINCGK V+SRVARVCK+DTGGKN+L QNW T+LKA
Sbjct: 184 EPNFVGSFDIGDYVYFFFRETAVEYINCGKVVYSRVARVCKKDTGGKNVLRQNWTTFLKA 243

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPG-DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAF- 152
           RLNCSI GEFPFYFNEIQ +YKVPG DDT FY  FTTS  G  GSA+C F++ DI  AF 
Sbjct: 244 RLNCSISGEFPFYFNEIQSVYKVPGRDDTLFYATFTTSENGFTGSAVCVFTLSDINAAFD 303

Query: 153 VGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDN 212
            GKFKEQA+S+SAWLPVLSS VPEPRPG CVND+ TL D+VL+F R+HPLMD+AV+H   
Sbjct: 304 TGKFKEQASSSSAWLPVLSSEVPEPRPGTCVNDSATLSDTVLHFARTHPLMDDAVSH--G 361

Query: 213 KPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
            P+ Y RD++FTHLVVD ++ +      EY+V++A +   +
Sbjct: 362 PPLLYLRDVVFTHLVVDKLRIDD----QEYVVFYAGSNDGK 398

Sema2A, a secreted semaphorin, signals through its receptor plexin B (PlexB) to regulate central and peripheral axon pathfinding. In the Drosophila embryo, Sema2A secreted by oenocytes interacts with PlexB to guide sensory axons. Sema2A is a member of the semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 452

>gnl|CDD|200496 cd11235, Sema_semaphorin, The Sema domain, a protein interacting module, of semaphorins

 Score =  303 bits (778), Expect = e-100
 Identities = 128/219 (58%), Positives = 157/219 (71%), Gaps = 8/219 (3%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
           P FVG++DIG YV+FFFRE AVEYINCGK+V+SRVARVCK D GG   L + W T+LKAR
Sbjct: 162 PQFVGAFDIGDYVYFFFREIAVEYINCGKAVYSRVARVCKNDQGGSRSLEKKWTTFLKAR 221

Query: 96  LNCSIPGEFPFYFNEIQDIYKVP---GDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAF 152
           LNCS+PGEFPFYFNE+QD++ +P     +  FY VFTT    + GSA+C++S+ DIE  F
Sbjct: 222 LNCSVPGEFPFYFNELQDVFDLPSPSNKEKIFYAVFTTPYNSIPGSAVCAYSLSDIEAVF 281

Query: 153 VGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDN 212
            G FKEQ +S SAWLPV   RVPEPRPG CV+D+  LPD  LNFI+SHPLMDEAV    N
Sbjct: 282 NGPFKEQHSSNSAWLPVPDERVPEPRPGTCVDDSSPLPDDTLNFIKSHPLMDEAVTPILN 341

Query: 213 KPVFYRRDLL--FTHLVVDVVQYEVFGTTSEYIVYFAAT 249
           +P+F + D+   FT + VD VQ ++  T   Y V F  T
Sbjct: 342 RPLFIKTDVNYRFTKIAVDRVQAKLGQT---YDVLFVGT 377

Semaphorins are regulator molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. They can be divided into 7 classes. Vertebrates have members in classes 3-7, whereas classes 1 and 2 are known only in invertebrates. Class 2 and 3 semaphorins are secreted proteins; classes 1 and 4 through 6 are transmembrane proteins; and class 7 is membrane associated via glycosylphosphatidylinositol (GPI) linkage. The semaphorins exert their function through their receptors, the neuropilin and plexin families. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 437

>gnl|CDD|200498 cd11237, Sema_1A, The Sema domain, a protein interacting module, of semaphorin 1A (Sema1A)

 Score =  286 bits (735), Expect = 1e-93
 Identities = 116/203 (57%), Positives = 140/203 (68%), Gaps = 8/203 (3%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
            P+FV S+  G YV+FFFRETAVEYINCGK+++SRVARVCK D GG +     W ++LKA
Sbjct: 159 APNFVSSFAYGDYVYFFFRETAVEYINCGKAIYSRVARVCKNDKGGPHPFRDRWTSFLKA 218

Query: 95  RLNCSIPGEFPFYFNEIQDIYK-VPG-----DDTKFYGVFTTSTTGLMGSAICSFSIEDI 148
           RLNCS+PGE+PFYFNEIQ     V G          YGVFTT    + GSA+C+FS++DI
Sbjct: 219 RLNCSVPGEYPFYFNEIQSTSDIVEGGYGGKSAKLIYGVFTTPVNSISGSAVCAFSLQDI 278

Query: 149 ERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVA 208
              F G FKEQ    S WLPV S++VPEPRPGQCVND+ TLPD  +NFI+SHPLMDEAV 
Sbjct: 279 LEVFDGSFKEQQDINSNWLPVPSNKVPEPRPGQCVNDSRTLPDVTVNFIKSHPLMDEAVP 338

Query: 209 HRDNKPVFYRRDLL--FTHLVVD 229
               +P+  R  L   FT + VD
Sbjct: 339 SFFGRPILVRTSLQYRFTQIAVD 361

Sema1A is a transmembrane protein. It has been shown to mediate the defasciculation of motor axon bundles at specific choice points. Sema1A binds to its receptor plexin A (PlexA), which in turn triggers downstream signaling events involving the receptor tyrosine kinase Otk, the evolutionarily conserved flavoprotein monooxygenase molecule interacting with CasL (MICAL), and the A kinase anchoring protein Nervy, leading to repulsive growth-cone response. Sema1A has also been shown to be involved in synaptic formation. It is a member of the semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 446

>gnl|CDD|214747 smart00630, Sema, semaphorin domain

 Score =  268 bits (687), Expect = 4e-87
 Identities = 117/238 (49%), Positives = 149/238 (62%), Gaps = 15/238 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FV +++ G +V+FFFRETAVE  NCGK+V SRVARVCK D GG   L + W ++LKA
Sbjct: 138 EPNFVYAFESGDFVYFFFRETAVEDDNCGKAVHSRVARVCKNDVGGPRSLDKKWTSFLKA 197

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVP---GDDTKFYGVFTTSTTGLMGSAICSFSIEDIERA 151
           RL CS+PGE PFYFNE+Q  + +P     D   YGVF+TS+  + GSA+C+FS+ DI   
Sbjct: 198 RLECSVPGEDPFYFNELQAAFLLPPGSESDDVLYGVFSTSSNPIPGSAVCAFSLSDINAV 257

Query: 152 FVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVN---DTETLPDSVLNFIRSHPLMDEAVA 208
           F G FKE  TSTS WLP    +VP PRPG C N    ++ LPD  LNFI+SHPLMDE V 
Sbjct: 258 FNGPFKECETSTSQWLPYSRGKVPYPRPGTCPNKPPSSKDLPDETLNFIKSHPLMDEVVQ 317

Query: 209 HRDNKPVFYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQD 264
               +P+F + D   L T + VD V      T   Y V F  T+  R   +KV L + 
Sbjct: 318 PLTGRPLFVKTDSNYLLTSIAVDRVA-----TDGNYTVLFLGTSDGR--ILKVVLSES 368

Length = 390

>gnl|CDD|216480 pfam01403, Sema, Sema domain

 Score =  244 bits (626), Expect = 2e-77
 Identities = 111/230 (48%), Positives = 134/230 (58%), Gaps = 22/230 (9%)

Query: 36  PDFVGSYDIGK-------YVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN- 87
           P+FV SY I          V+FFFRETAVE  NC K++ SRVARVCK D GG++ L  N 
Sbjct: 167 PNFVDSYPIHYVHSFSDDKVYFFFRETAVEDSNC-KAIHSRVARVCKNDPGGRSYLELNK 225

Query: 88  WATYLKARLNCSIPG--EFPFYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICS 142
           W T+LKARLNCS+PG    PFYFNE+Q  + +P         YGVFTTS+    GSA+C+
Sbjct: 226 WTTFLKARLNCSVPGREGIPFYFNELQAAFVLPTGADTDPVLYGVFTTSSNSSAGSAVCA 285

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET-LPDSVLNFIRSHP 201
           FS+ DI + F G FK Q    S WLP    +VP PRPGQC N +   LPD  LNFIR HP
Sbjct: 286 FSMSDINQVFNGPFKHQEGPNSKWLPY-RGKVPYPRPGQCPNASNGDLPDDTLNFIRCHP 344

Query: 202 LMDEAVAHRDNKPVFYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
           LMDE V    N P+F  +      T + VD V+        +Y V F  T
Sbjct: 345 LMDEVVPPLHNVPLFVGQSGNYRLTSIAVDRVEAG----DGQYTVLFLGT 390

The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in the hepatocyte growth factor receptor and human plexin A-3. Length = 435

>gnl|CDD|200503 cd11242, Sema_6, The Sema domain, a protein interacting module, of class 6 semaphorins (Sema6)

 Score =  220 bits (563), Expect = 8e-68
 Identities = 107/227 (47%), Positives = 136/227 (59%), Gaps = 21/227 (9%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + + G YV+FFFRE AVEY   GK VFSRVARVCK D GG   +L + W ++LK
Sbjct: 172 EPHFVHAVEYGDYVYFFFREIAVEYNTLGKVVFSRVARVCKNDMGGSPRVLEKQWTSFLK 231

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYF+ +Q   D+ ++ G      GVFTT    + GSA+C+F ++DIE+
Sbjct: 232 ARLNCSVPGDSHFYFDVLQAVTDVIRINGRPVVL-GVFTTQYNSIPGSAVCAFDMDDIEK 290

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCV--------NDTETLPDSVLNFIRSHPL 202
            F G+FKEQ +  SAW PV   RVP+PRPG C           +   PD  LNFI++HPL
Sbjct: 291 VFEGRFKEQKSPDSAWTPVPEDRVPKPRPGCCAGSGSAEKYKTSNDFPDDTLNFIKTHPL 350

Query: 203 MDEAVAHRDNKPVFYR---RDLLFTHLVVDVVQYEVFGTTSEYIVYF 246
           MDEAV    N+P F R   R  L T + VD       G    Y V F
Sbjct: 351 MDEAVPSIINRPWFTRTMVRYRL-TQIAVDNAA----GPYQNYTVVF 392

Class 6 semaphorins (Sema6s) are membrane associated semaphorins. There are 6 subfamilies named 6A to 6D. Sema6s bind to plexin As in a neuropilin independent fashion. Sema6-plexin A signaling plays important roles in lamina-specific axon projections. Interactions between plexin A2, plexin A4, and Sema6A control lamina-restricted projection of hippocampal mossy fibers. Interactions between Sema6C, Sema6D and plexin A1 shape the stereotypic trajectories of sensory axons in the spinal cord. In addition to axon targeting, Sema6D-plexin A1 interactions influence a wide range of other biological processes. During cardiac development, Sema6D attracts or repels endothelial cells in the cardiac tube depending on the expression patterns of specific coreceptors in addition to plexin A1. Furthermore, Sema6D binds a receptor complex comprising of plexin A1, Trem2 (triggering receptor expressed on myeloid cells 2), and DAP12 on dendritic cells and osteoclasts to mediate T-cell-DC interactions and to control bone development, respectively. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 465

>gnl|CDD|200502 cd11241, Sema_5, The Sema domain, a protein interacting module, of semaphorin 5 (Sema5)

 Score =  210 bits (535), Expect = 6e-64
 Identities = 100/233 (42%), Positives = 136/233 (58%), Gaps = 15/233 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FVGSY+IG + +FFFRE AVE+ +CGK+V+SR+ARVCK D GG+ +L   W T++KA
Sbjct: 167 EPNFVGSYEIGNHTYFFFRENAVEHQDCGKTVYSRIARVCKNDIGGRFLLEDTWTTFMKA 226

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCS+PGEFPFY+NEIQ  + +P  D   Y VFTT+  G+ GSAIC+F++  I +AF G
Sbjct: 227 RLNCSLPGEFPFYYNEIQGTFYLPETDL-IYAVFTTNVNGIAGSAICAFNLSAINQAFNG 285

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDT------ETLPDSVLNFIRSHPLMDEAVA 208
            FK Q  + SAWLP      P P P      +          +  L   + + LM E V 
Sbjct: 286 PFKYQENNGSAWLP-----TPNPHPNFQCTTSIDRGQPANTTERDLQDAQKYQLMAEVVQ 340

Query: 209 HRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFA-ATTTLRTVFVKVR 260
                P+    D+ F+ L VDVVQ    GT   +I Y      T+  ++   R
Sbjct: 341 PVTKIPLVTMDDVRFSKLAVDVVQGR--GTQLVHIFYVGTDYGTILKMYQPHR 391

Class 5 semaphorins are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. There are three subfamilies in class 5 semaphorins, namely 5A, 5B and 5C. Sema5A and Sema5B function as guidance cues for optic and corticofugal nerve development, respectively. Sema5A-induced cell migration requires Met signaling. Sema5C is an early development gene and may play a role in odor-guided behavior. Sema5A is also implicated in cancer. In a screening model for metastasis, the Drosophila Sema5A ortholog, Dsema-5C, has been found to be required in tumorigenicity and metastasis. Sema5A is highly expressed in human pancreatic cancer cells and is associated with tumor growth, invasion and metastasis. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 438

>gnl|CDD|200526 cd11265, Sema_5C, The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)

 Score =  204 bits (520), Expect = 9e-62
 Identities = 94/227 (41%), Positives = 137/227 (60%), Gaps = 11/227 (4%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKN-ILSQNWATYLKA 94
           P FVGS++ G +V+F FRE+AVEY+NCGK ++SR+ARVCK D GG   +L  NW T+LKA
Sbjct: 170 PQFVGSFETGNFVYFLFRESAVEYMNCGKVIYSRIARVCKNDVGGGTMLLKDNWTTFLKA 229

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCS+PGE+PFYF+EIQ +  +P D+   Y  FTT    + GSA+C+F++  I  AF G
Sbjct: 230 RLNCSLPGEYPFYFDEIQGMTYLP-DEGILYATFTTPENSIAGSAVCAFNLSSINAAFDG 288

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
            FK Q +S +AW      RV           + +    +L   R + LMDEAV     +P
Sbjct: 289 PFKHQESSGAAW-----ERVNVNHRDHFNQCSSSSSSHLLESSR-YQLMDEAVQPITLEP 342

Query: 215 VFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATT-TLRTVFVKVR 260
           + + +   F+H+ VDV+  ++    S +++Y A T   ++ + V  R
Sbjct: 343 LHHAKLERFSHIAVDVIPTKIH--QSVHVLYVATTGGLIKKISVLPR 387

In Drosophila, Sema5C was identified as an early development gene, which is expressed in stage 2 embryos with a striped pattern emerging at later stages. Sema5c may play a role in odor-guided behavior and in tumorigenesis. Sema5C belongs to class 5 semaphorin family of proteins, which are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 433

>gnl|CDD|200528 cd11267, Sema_6B, The Sema domain, a protein interacting module, of semaphorin 6B (Sema6B)

 Score =  196 bits (501), Expect = 1e-58
 Identities = 96/209 (45%), Positives = 127/209 (60%), Gaps = 15/209 (7%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + + G +V+FFFRE A+E+    K V SRVARVCK D GG + +L + W ++LK
Sbjct: 172 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDMGGSQRVLEKQWTSFLK 231

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   DI  + G       VF+T T  + GSA+C+F +  +  
Sbjct: 232 ARLNCSVPGDSHFYFNVLQAVSDILNLGGRPV-VLAVFSTPTNSIPGSAVCAFDMTQVAA 290

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCV------NDTETLPDSVLNFIRSHPLMD 204
            F G+F+EQ +  S W PV    VP PRPG C       N + TLPD VLNF+++HPLMD
Sbjct: 291 VFEGRFREQKSPESIWTPVPEELVPRPRPGCCAAPGMRYNSSSTLPDEVLNFVKTHPLMD 350

Query: 205 EAVAHRDNKPVFYR---RDLLFTHLVVDV 230
           EAV    + P   R   R  L TH+VVD 
Sbjct: 351 EAVPSLGHAPWIVRTMTRYQL-THMVVDT 378

Sema6B functions as repellents for axon growth; this repulsive activity is mediated by its receptor Plexin A4. Sema6B is expressed in CA3, and repels mossy fibers in a Plexin A4 dependent manner. In human, it was shown that peroxisome proliferator-activated receptors (PPARs) and 9-cis-retinoic acid receptor (RXR) regulate human semaphorin 6B (Sema6B) gene expression. Sema6B is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 466

>gnl|CDD|200501 cd11240, Sema_4, The Sema domain, a protein interacting module, of class 4 semaphorins (Sema4)

 Score =  196 bits (499), Expect = 2e-58
 Identities = 96/238 (40%), Positives = 131/238 (55%), Gaps = 28/238 (11%)

Query: 36  PDFVGSYDIGKY----------VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILS 85
           P FVGS  I +           ++FFF ETAVEY    K   SRVARVCK D GG+  L 
Sbjct: 171 PAFVGSAHIRESIDSPDGDDDKIYFFFTETAVEYDFYEKVTVSRVARVCKGDLGGQRTLQ 230

Query: 86  QNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDD---TKFYGVFTTSTTGLMGSAICS 142
           + W T+LKA+L CS P      FN ++D++ +  D    T FYGVFT+       SA+C+
Sbjct: 231 KKWTTFLKAQLVCSQPDS-GLPFNVLRDVFVLSPDSWDATIFYGVFTSQWNVSGLSAVCA 289

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET---------LPDSV 193
           +S+EDI++ F GK+KE    TS W    +  VP+PRPG C+ ++           LPD+V
Sbjct: 290 YSLEDIKKVFSGKYKEFNRETSKWSR-YTGPVPDPRPGACITNSARSQGITSSLNLPDNV 348

Query: 194 LNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
           L F++ HPLMDE V H  N+P+  +  + +T + V  VQ  + G T  Y V F  T  
Sbjct: 349 LTFVKDHPLMDEQV-HPINRPLLVKSGVNYTRIAVHRVQ-ALDGQT--YTVLFLGTED 402

Class 4 semaphorins (Sema4s) are transmembrane regulator molecules involved in the development of the nervous system, immune response, cytoskeletal organization, angiogenesis, and cell-cell interactions. There are 7 distinct subfamilies in class 4 semaphorins, named 4A to 4G. Several class 4 subfamilies play important roles in the immune system and are called "immune semaphorins". Sema4A plays critical roles in T cell-DC interactions in the immune response. Sema4D/CD100, expressed by lymphocytes, promotes the aggregation and survival of B lymphocytes and inhibits cytokine-induced migration of immune cells in vitro. It is required for normal activation of B and T lymphocytes. Sema4B negatively regulates basophil functions through T cell-basophil contacts and significantly inhibits IL-4 and IL-6 production from basophils in response to various stimuli, including IL-3 and papain. Sema4s not only influence the activation state of cells but also modulate their migration and survival. The effects of Sema4s on nonlymphoid cells are mediated by plexin D1 and plexin Bs. The Sema4G and Sema4C genes are expressed in the developing cerebellar cortex and are involved in neural tube closure and development of cerebellar granules cells through receptor plexin B2. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 456

>gnl|CDD|200530 cd11269, Sema_6D, The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)

 Score =  194 bits (495), Expect = 7e-58
 Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 19/229 (8%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P F+ + + G YV+FFFRE AVE+ N GK+V+SRVAR+CK D GG + +L ++W ++LK
Sbjct: 172 EPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLK 231

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYF+ +Q   DI ++ G  T   GVFTT    + GSA+C+FS++DIE+
Sbjct: 232 ARLNCSVPGDSFFYFDVLQSITDIIEINGIPT-VVGVFTTQLNSIPGSAVCAFSMDDIEK 290

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ T  S W  V   +VP+PRPG C           +   PD  L+FI+SHPL
Sbjct: 291 VFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPL 350

Query: 203 MDEAVAHRDNKPVFYRRDLLF--THLVVDVVQYEVFGTTSEYIVYFAAT 249
           MD AV     +P F +  + +  T + VD       G    Y V F  +
Sbjct: 351 MDSAVPSIIEEPWFTKTRVRYRLTAIAVD----HAAGPHQNYTVIFVGS 395

Sema6D is expressed predominantly in the nervous system during embryogenesis and it uses Plexin-A1 as a receptor. It displays repellent activity for dorsal root ganglion axons. Sema6D also acts as a regulator of late phase primary immune responses. In addition, Sema6D is overexpressed in gastric carcinoma, indicating that it may have an important role in the occurrence and development of the cancer. Sema6D is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 465

>gnl|CDD|200527 cd11266, Sema_6A, The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)

 Score =  194 bits (494), Expect = 1e-57
 Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 13/196 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY + GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 172 EPYFVQAVDYGDYIYFFFREIAVEYNSMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 231

Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   D+  + G D      F+T    + GSA+C++ + DI  
Sbjct: 232 ARLNCSVPGDSHFYFNILQAVTDVIHINGRDVVL-ATFSTPYNSIPGSAVCAYDMLDIAS 290

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDT--------ETLPDSVLNFIRSHPL 202
            F G+FKEQ +  S W PV   RVP+PRPG C   +           PD  LNFI++HPL
Sbjct: 291 VFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPL 350

Query: 203 MDEAVAHRDNKPVFYR 218
           MDEAV    N+P F R
Sbjct: 351 MDEAVPSIINRPWFLR 366

In the cerebellum, Sema6A-plexin A2 signaling modulates granule cell migration by controlling centrosome positioning. Besides plexin A2, plexin A4 is also found to be a receptor of Sema6A. Interactions between plexin A2, plexin A4, and Sema6A control lamina-restricted projection of hippocampal mossy fibers. It is required for the clustering of boundary cap cells at the PNS/CNS interface and thus, prevents motoneurons from streaming out of the ventral spinal cord. At the dorsal root entry site, it organizes the segregation of dorsal roots. Sema6A may also be involved in axonal pathfinding processes in the periinfarct and homotopic contralateral cortex. Sema6A is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 466

>gnl|CDD|200524 cd11263, Sema_5A, The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)

 Score =  191 bits (486), Expect = 7e-57
 Identities = 98/207 (47%), Positives = 123/207 (59%), Gaps = 20/207 (9%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+FV SYDIG + +FFFRE AVE+ +CGK+VFSR ARVCK D GG+ +L   W T++KA
Sbjct: 167 EPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKA 225

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCS PGE PFY+NE+Q  + +P  D   YG+FTT+   +  SA+C F++  I +AF G
Sbjct: 226 RLNCSRPGEIPFYYNELQSTFFLPELDL-IYGIFTTNVNSIAASAVCVFNLSAISQAFNG 284

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPG-QC--------VNDTETLPDSVLNFIRSHPLMDE 205
            FK Q  S SAWLP      P P P  QC        VN TE        FI    LM E
Sbjct: 285 PFKYQENSRSAWLP-----YPNPNPNFQCGTMDQGLYVNLTERNLQDAQKFI----LMHE 335

Query: 206 AVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
            V      P F   +  F+H+ VDVVQ
Sbjct: 336 VVQPVTPVPYFMEDNSRFSHVAVDVVQ 362

Originally, mouse Sema5A was identified as a protein that induces inhibitory responses during optic nerve development. Recent studies show that Sema5A controls innate immunity in mice. It also has been identified as a candidate gene for causing idiopathic autism in humans. Plexin B3 functions as a binding partner and receptor for Sema5A. Furthermore, Sema5A is also implicated in cancer. The role of the Drosophila Sema5A ortholog, Dsema-5C, in tumorigenicity and metastasis has been reported. Sema5A is highly expressed in human pancreatic cancer cells and is associated with tumor growth, invasion and metastasis. Sema5A belongs to class 5 semaphorin family of proteins, which are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 436

>gnl|CDD|200500 cd11239, Sema_3, The Sema domain, a protein interacting module, of class 3 semaphorins

 Score =  191 bits (487), Expect = 2e-56
 Identities = 92/227 (40%), Positives = 124/227 (54%), Gaps = 28/227 (12%)

Query: 36  PDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNW 88
           P FVG+Y I          V+FFFRE AVE    GK+++SRV R+CK D GG+  L   W
Sbjct: 178 PKFVGAYLIPDSDNPDDDKVYFFFREKAVEAEGSGKAIYSRVGRICKNDVGGQRSLVNKW 237

Query: 89  ATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSF 143
           +T+LKARL CS+PG      YF+E++D++ +P  D K    YGVFTTS+    GSA+C +
Sbjct: 238 STFLKARLVCSVPGPDGIDTYFDELEDVFLLPTRDPKNPLIYGVFTTSSNVFKGSAVCVY 297

Query: 144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC--------VNDTETLPDSVLN 195
           S+ DI  AF G F  +      W+     +VP PRPG C           T+  PD V++
Sbjct: 298 SMADIRAAFNGPFAHKEGPNYQWVE-YQGKVPYPRPGTCPSKTYGPLYKSTKDFPDDVIS 356

Query: 196 FIRSHPLMDEAVAHRDNKPVFYRRDL--LFTHLVVDVV-----QYEV 235
           F RSHPLM   V     +P+  R ++    T + VD V     QY+V
Sbjct: 357 FARSHPLMYNPVYPLHGRPLLIRTNVPYRLTQIAVDRVEAEDGQYDV 403

Class 3 semaphorins (Sema3s) are secreted regulator molecules involved in the development of the nervous system, vasculogenesis, angiogenesis,and tumorigenesis. There are 7 distinct subfamilies named Sema3A to 3G. Sema3s function as repellent signals during axon guidance by repelling neurons away from the source of Sema3s. However, Sema3s that are secreted by tumor cells play an inhibitory role in tumor growth and angiogenesis (specifically Sema3B and Sema3F). Sema3s functions by forming complexes with neuropilins and A-type plexins, where neuropilins serve as the ligand binding moiety and the plexins function as signal transduction component. Sema3s primarily inhibit the cell motility and migration of tumor and endothelial cells by inducing collapse of the actin cytoskeleton via neuropilins and plexins. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 471

>gnl|CDD|200525 cd11264, Sema_5B, The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)

 Score =  189 bits (481), Expect = 5e-56
 Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 18/228 (7%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
           +P+F+ +YDIG + +FFFRE AVE+ +CGK+V+SRVARVCK D GG+ +L   W T++KA
Sbjct: 167 EPNFIAAYDIGLFTYFFFRENAVEH-DCGKTVYSRVARVCKNDIGGRFLLEDTWTTFMKA 225

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVG 154
           RLNCS PGE PFY+NE+Q  + +P  D   YGVFTT+   +  SA+C+F++  I +AF G
Sbjct: 226 RLNCSRPGEIPFYYNELQSTFYLPEQDL-IYGVFTTNVNSIAASAVCAFNLSAITQAFNG 284

Query: 155 KFKEQATSTSAWLPVLSSRVPEPRPG-QC--VNDT---ETLPDSVLNFIRSHPLMDEAVA 208
            F+ Q    SAWLP        P P  QC  ++D    E L +  L   +   LM++ V 
Sbjct: 285 PFRYQENPRSAWLP-----TANPIPNFQCGTLSDDSPNENLTERSLQDAQRLFLMNDVVQ 339

Query: 209 HRDNKPVFYRRDLLFTHLVVDVVQ-----YEVFGTTSEYIVYFAATTT 251
                P+  +  + F+ LVVD+VQ     Y V    +EY     A +T
Sbjct: 340 PVTVDPLVTQDSVRFSKLVVDIVQGKDTLYHVMYIGTEYGTILKALST 387

Sema5B is expressed in regions of the basal telencephalon in rat. Sema5B is an inhibitory cue for corticofugal axons and acts as a source of repulsion for the appropriate guidance of cortical axons away from structures such as the ventricular zone as they navigate toward and within subcortical regions. In addition to its role as a guidance cue, Sema5B regulates the development and maintenance of synapse size and number in hippocampal neurons. In addition, the sema domain of Sema5B can be cleaved of the whole protein and exerts its function in regulation of synapse morphology. Sema5B belongs to the class 5 semaphorin family of proteins, which are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 437

>gnl|CDD|200529 cd11268, Sema_6C, The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)

 Score =  183 bits (465), Expect = 2e-53
 Identities = 93/208 (44%), Positives = 128/208 (61%), Gaps = 14/208 (6%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGK-NILSQNWATYLK 93
           +P FV + + G +V+FFFRE +VE    G+  FSRVARVCKRD GG    L ++W ++LK
Sbjct: 171 EPHFVQALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLK 230

Query: 94  ARLNCSIPGEFPFYFNEIQDI---YKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
            RLNCS+PG+  FYF+ +Q +     + G  +  +GVFTT T  + GSA+C+F +++IER
Sbjct: 231 LRLNCSVPGDSTFYFDVLQALTGPVNLHGR-SALFGVFTTQTNSIPGSAVCAFYLDEIER 289

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCV--------NDTETLPDSVLNFIRSHPL 202
            F GKFKEQ +   AW PV   RVP PRPG C         + +  LPD VL FI++HPL
Sbjct: 290 GFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIKAHPL 349

Query: 203 MDEAVAHRDNKPVF-YRRDLLFTHLVVD 229
           +D AV    ++P+       L T + VD
Sbjct: 350 LDPAVPPVTHQPLLTLTSRALLTQVAVD 377

Sema6C is highly expressed in adult brain and skeletal muscle and it shows growth cone collapsing activity. It may play a role in the maintenance and remodelling of neuronal connections. In adult skeletal muscle, this role includes prevention of motor neuron sprouting and uncontrolled motor neuron growth. The expression of Sema6C in adult skeletal muscle is down-regulated following denervation. Sema6C is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 465

>gnl|CDD|200531 cd11270, Sema_6E, The Sema domain, a protein interacting module, semaphorin 6E (sema6E)

 Score =  182 bits (462), Expect = 4e-53
 Identities = 105/262 (40%), Positives = 141/262 (53%), Gaps = 27/262 (10%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGK-NILSQNWATYLK 93
           +P F+ + + G YV+FF  E AVEY   GK VFSRVARVCK D GG   +L + W ++LK
Sbjct: 170 EPHFLHAIEYGNYVYFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTSFLK 229

Query: 94  ARLNCSIPGEFPFYFNEIQDIYKVPGDDTK--FYGVFTTSTTGLMGSAICSFSIEDIERA 151
           ARLNCS+PG+  FYF+ +Q +  V   + +    GVFTT    + GSA+C+F ++DIE+ 
Sbjct: 230 ARLNCSVPGDSFFYFDVLQSLTNVMQINHRPAVLGVFTTQANSITGSAVCAFYMDDIEKV 289

Query: 152 FVGKFKEQATSTSAWLPVLSSRVPEPRPGQCV--------NDTETLPDSVLNFIRSHPLM 203
           F GKFKEQ  S SAW PV    VP+PRPG C           +   PD  L FI+S+PLM
Sbjct: 290 FNGKFKEQRNSESAWTPVPDEAVPKPRPGSCAGDGPAAGYKSSTNFPDETLTFIKSYPLM 349

Query: 204 DEAVAHRDNKPVFYRRDLLF--THLVVDVVQYEVFGTTSEYIVYFAATT----------T 251
           DEAV   +N+P F R    F  T + VD       G    Y V F  +            
Sbjct: 350 DEAVPSVNNRPCFTRTTSRFKLTQIAVDTAA----GPYKNYTVVFLGSENGHVLKVLASM 405

Query: 252 LRTVFVKVRLLQDVSNTSDSIC 273
                   ++L+D+   + + C
Sbjct: 406 HPNSSYSTQVLEDIDVYNPNKC 427

Sema6E is expressed predominantly in the nervous system during embryogenesis. It binds Plexin A1 and might utilize it as a receptor to repel axons of specific types during development. Sema6E acts as a repellent to dorsal root ganglion axons as well as sympathetic axons. Sema6E is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 462

>gnl|CDD|200513 cd11252, Sema_3D, The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)

 Score =  167 bits (425), Expect = 2e-47
 Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 21/242 (8%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           ++FFFRE + +     KSV SRV RVCK D GG+  L   W T+LKARL CSIPG     
Sbjct: 200 IYFFFREASQDGSTSDKSVLSRVGRVCKNDVGGQRSLINKWTTFLKARLVCSIPGPDGAD 259

Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E+QDI+ +P  D +    YGVFTT+++   GSA+C +S+ DI   F G +  + + 
Sbjct: 260 THFDELQDIFLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESP 319

Query: 163 TSAWLPVLSSRVPEPRPGQC--------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
              W+     R+P PRPG C        +  T+  PD V++FI+ HPLM ++V      P
Sbjct: 320 DHRWVQ-YEGRIPYPRPGTCPSKTYDPLIKSTKDFPDEVISFIKRHPLMYKSVYPLTGGP 378

Query: 215 VFYR--RDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSI 272
           VF R   D   T +VVD V  E      +Y V F   T + TV   V + ++     + +
Sbjct: 379 VFTRINVDYRLTQIVVDHVAAE----DGQYDVMFLG-TDIGTVLKVVSITKEKWTMEEVV 433

Query: 273 CE 274
            E
Sbjct: 434 LE 435

Sema3D is a secreted semaphorin expressed during the development of the nervous system. In zebrafish, Sema3D is expressed in the ventral tectum. It guides retinal axons along the dorsoventral axis of the tectum and guides the laterality of retinal ganglion cell (RGC) projections. Both Sema3D knockdown or its ubiquitous overexpression induced aberrant ipsilateral projections. Proper balance of Sema3D is needed at the midline for the progression of RGC axons from the chiasm midline into the contralateral optic tract. Sema3D is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 474

>gnl|CDD|200511 cd11250, Sema_3B, The Sema domain, a protein interacting module, of semaphorin 3B (Sema3B)

 Score =  166 bits (421), Expect = 6e-47
 Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 22/227 (9%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           ++FFFRETAVE    GK  +SR+ ++C+ D GG+  L   W T+LKARL CS+PG     
Sbjct: 197 IYFFFRETAVEAAGLGKQSYSRIGQICRNDMGGQRSLVNKWTTFLKARLVCSVPGNEGGD 256

Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E++D++ +   D +    Y VF+TS++   GSA+C +++ D+ RAF+G F  +   
Sbjct: 257 THFDELRDVFLLQTRDKRNPLIYAVFSTSSSVFQGSAVCVYTMNDVRRAFLGPFAHKEGP 316

Query: 163 TSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPV 215
              W+     +VP PRPG C          T+  PD V+ F R+HPLM   V     +P+
Sbjct: 317 NYQWVS-YQGKVPYPRPGMCPSKTFGSFESTKDFPDDVIQFARNHPLMFNPVLPLGGRPL 375

Query: 216 FYRR--DLLFTHLVVDVVQYEVFGTTSEYIVYFAAT---TTLRTVFV 257
           F R      FT + VD     V      Y V F  T   + L+ + V
Sbjct: 376 FLRTGIPYTFTQIAVD----RVAAADGHYDVMFIGTDVGSVLKVISV 418

Sema3B is coexpressed with semaphorin 3F and both proteins are candidate tumor suppressors. Both Sema3B and Sema3F show high levels of expression in normal tissues and low-grade tumors but are down-regulated in highly metastatic tumors in the lung, melanoma cells, bladder carcinoma cells and prostate carcinoma. They are upregulated by estrogen and inhibit cell motility and invasiveness through decreased FAK phosphorylation and inhibition of MMP-2 and MMP-9 expression. Two receptor families, the neuropilins (NP) and plexins, have been implicated in mediating the actions of semaphorins 3B and 3F. Sema3B is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 471

>gnl|CDD|200523 cd11262, Sema_4G, The Sema domain, a protein interacting module, of semaphorin 4G (Sema4G)

 Score =  164 bits (418), Expect = 1e-46
 Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 15/197 (7%)

Query: 48  VFFFFRETAVEYINC-GKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPF 106
           ++FFF E + E      +S  +RVARVCK D GGK  L + W ++LKARL C IP E+ F
Sbjct: 192 IYFFFTERSQEETAYFSQSRVARVARVCKGDRGGKKTLQRKWTSFLKARLVCYIP-EYEF 250

Query: 107 YFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATST 163
            FN ++ ++ + G    DT FYG+F      +  SAIC +S+ DI+ AF G + E   S+
Sbjct: 251 LFNVLRSVFVLWGSTPQDTVFYGIFGLEWKNVKASAICRYSLSDIQTAFEGPYMEYQDSS 310

Query: 164 SAWLPVLSSRVPEPRPGQCVND---------TETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
           S W    + +VPEPRPG C+ D         ++ LPD+VL+F+R HPLM E V   + +P
Sbjct: 311 SKWSR-YTGKVPEPRPGSCITDEHRSQGINSSQDLPDNVLDFVRRHPLMAEQVLPVEGRP 369

Query: 215 VFYRRDLLFTHLVVDVV 231
           + ++R++++T + V  V
Sbjct: 370 LLFKRNVIYTKIAVQTV 386

The Sema4G and Sema4C genes are expressed in the developing cerebellar cortex. Sema4G and Sema4C proteins specifically bind to Plexin B2 expressed in the cerebellar granule cells. Sema4G and Sema4C are involved in neural tube closure and cerebellar granule cell development through Plexin B2.Sema4G belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 457

>gnl|CDD|200518 cd11257, Sema_4B, The Sema domain, a protein interacting module, of semaphorin 4B (Sema4B)

 Score =  163 bits (413), Expect = 7e-46
 Identities = 91/246 (36%), Positives = 128/246 (52%), Gaps = 38/246 (15%)

Query: 32  NCLQ-PDFVGSYDI----GKYV------FFFFRETAVEYINCGKSVFSRVARVCKRDTGG 80
           N LQ P FVGS  I     K V      +FFF ET  E+     ++ SR+ARVCK D GG
Sbjct: 173 NWLQDPAFVGSAYIQESLPKLVGDDDKIYFFFSETGKEFDFFENTIVSRIARVCKGDEGG 232

Query: 81  KNILSQNWATYLKARLNCSIPGE-FPFYFNEIQDIYKVPGD-----DTKFYGVFTT--ST 132
           + +L + W T+LKA+L CS+P + FP  FN +QD++ +        DT FYGVFT+    
Sbjct: 233 ERVLQKRWTTFLKAQLLCSLPDDGFP--FNVLQDVFVLTPSPEDWKDTLFYGVFTSQWHK 290

Query: 133 TGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET---- 188
                SA+C F+++ ++RAF G +KE    T  W       VPEPRPG C+ ++      
Sbjct: 291 GTAGSSAVCVFTMDQVQRAFNGLYKEVNRETQQWYTYTHP-VPEPRPGACITNSARERKI 349

Query: 189 -----LPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYI 243
                +PD VLNF++ H LMD  V  +   P+  +  + +T + V  V+    G    Y 
Sbjct: 350 NSSLHMPDRVLNFVKDHFLMDGQVRSQ---PLLLQPQVRYTQIAVHRVK----GLHKTYD 402

Query: 244 VYFAAT 249
           V F  T
Sbjct: 403 VLFLGT 408

Sema4B, expressed in T and B cells, is an immune semaphorin. It functions as a negative regulatory of basophils through T cell-basophil contacts and it significantly inhibits IL-4 and IL-6 production from basophils in response to various stimuli, including IL-3 and papain. In addition, T cell-derived Sema4B suppresses basophil-mediated Th2 skewing and humoral memory responses. Sema4B may be also involved in lung cancer cell mobility by inducing the degradation of CLCP1 (CUB, LCCL-homology, coagulation factor V/VIII homology domains protein). Sema4B is characterized by a PDZ-binding motif at the carboxy-terminus, which mediates interaction with the post-synaptic density protein PSD-95/SAP90, which is thought to play a central role during synaptogenesis and in the structure and function of post-synaptic specializations of excitatory synapses. Sema4B belongs to class 4 transmembrane semaphorin family proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 464

>gnl|CDD|200517 cd11256, Sema_4A, The Sema domain, a protein interacting module, of semaphorin 4A (Sema4A)

 Score =  160 bits (407), Expect = 3e-45
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 14/220 (6%)

Query: 38  FVGSYDI--GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
           FV S++      V+FFF ETA E+    K   +RVARVCK D GG+ +L + W T+LKA+
Sbjct: 180 FVASFNPQGDSKVYFFFEETAREFDFFEKLTVARVARVCKNDVGGEKLLQKKWTTFLKAQ 239

Query: 96  LNCSIPGEFPFYFNEIQDIYKVPGDD---TKFYGVFTT--STTGLMGSAICSFSIEDIER 150
           L CS  G FP  FN I  +  +   D   + FY VFT+     G   SA+C++ + DIE+
Sbjct: 240 LTCSQQGHFP--FNVIHHVALLNQPDPNNSVFYAVFTSQWQLGGRRSSAVCAYKLNDIEK 297

Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHR 210
            F GK+KE    +S W       V +PRPG C     +  D  LNF++ H LMDE V   
Sbjct: 298 VFNGKYKELNKESSRW-TRYMGPVSDPRPGSCSGGKSS--DKALNFMKDHFLMDEVVLPG 354

Query: 211 DNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATT 250
             +P+  + ++ +T + VD VQ       +  +++     
Sbjct: 355 AGRPLLVKSNVQYTRIAVDSVQG--VSGHNYTVMFLGTDK 392

Sema4A is expressed in immune cells and is thus termed an "immune semaphorin". It plays critical roles in T cell-DC interactions in the immune response. It has been reported to enhance activation and differentiation of T cells in vitro and generation of antigen-specific T cells in vivo. The function of Sema4A in the immune response implicates its role in infectious and noninfectious diseases. Sema4A exerts its function through three receptors, namely Plexin B, Plexin D1, and Tim-2. Sema4A belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. TThe Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 447

>gnl|CDD|200521 cd11260, Sema_4E, The Sema domain, a protein interacting module, of semaphorin 4E (Sema4E)

 Score =  160 bits (407), Expect = 4e-45
 Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 21/201 (10%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIP-GEFPF 106
           ++ FF ETAVEY    K V SRVARVCK D GG+  L + W ++LKARL+CS+P    P+
Sbjct: 191 IYLFFSETAVEYDFYNKLVVSRVARVCKGDLGGQRTLQKKWTSFLKARLDCSVPEPSLPY 250

Query: 107 YFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFV-GKFKEQA-- 160
               IQD++ V   D +   FY VFT+ +     SA+C++++ DI   F  GKFK     
Sbjct: 251 V---IQDVFHVCHQDWRKCVFYAVFTSQSDSSQSSAVCAYNVTDISNVFSRGKFKTPVAV 307

Query: 161 -TSTSAWLPVLSSRVPEPRPGQCVND---------TETLPDSVLNFIRSHPLMDEAVAHR 210
            TS   W+ + S  +P PRPG C+N+         +  LPD  L F++  PLMD+AV   
Sbjct: 308 ETSFVKWV-MYSGELPVPRPGACINNAARTSGIKKSLNLPDKTLQFVKDKPLMDQAVHPI 366

Query: 211 DNKPVFYRRDLLFTHLVVDVV 231
             KP+  +R  LFT +VVD+V
Sbjct: 367 TGKPLLVKRGALFTRIVVDMV 387

Sema4E is expressed in the epithelial cells that line the pharyngeal arches in zebrafish. It may act as a guidance molecule to restrict the branchiomotor axons to the mesenchymal cells. Gain-of-function and loss-of-function studies demonstrate that Sema4E is essential for the guidance of facial axons from the hindbrain into their pharyngeal arch targets and is sufficient for guidance of gill motor axons. Sema4E guides facial motor axons by a repulsive action. Sema4E belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 456

>gnl|CDD|200522 cd11261, Sema_4F, The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)

 Score =  159 bits (404), Expect = 1e-44
 Identities = 78/211 (36%), Positives = 107/211 (50%), Gaps = 14/211 (6%)

Query: 34  LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLK 93
           L P   G  D    ++FFF ETA EY +  +    RVARVC  D GG+  L Q W T+LK
Sbjct: 182 LSPAEWGDEDGDDEIYFFFTETAREYDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLK 241

Query: 94  ARLNCSIPGEFPFYFNEIQDIYKVPGDD----TKFYGVFTTSTTGLMGSAICSFSIEDIE 149
           A L C  P E     + +QD+  +          FYG+F++   G   SA+C+F  +DI 
Sbjct: 242 ADLLCPGP-EHGRASSILQDVTTLRPLPGAGTPIFYGIFSSQWEGASISAVCAFRPQDIR 300

Query: 150 RAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCV-NDTE--------TLPDSVLNFIRSH 200
           R   G F+E     +  LPV+ S VP+PRPG+C+ N+ +        +LPD VL F+R H
Sbjct: 301 RVMNGPFREFKHDCNRGLPVMDSDVPQPRPGECITNNMKLLGFGSSLSLPDRVLTFVRDH 360

Query: 201 PLMDEAVAHRDNKPVFYRRDLLFTHLVVDVV 231
           PLMD  V   D  P+    D  +  +    V
Sbjct: 361 PLMDRPVFPADGHPLLVTTDTAYLRVAAHRV 391

Sema4F plays role in heterotypic cell-cell contacts and controls cell proliferation and suppresses tumorigenesis. In neurofibromatosis type 1 (NF1) patients, reduced Sema4F level disrupts Schwann cell/axonal interactions. Experiments using a yeast two-hybrid system show that the extreme C-terminus of Sema4F interacts with the PDZ domains of post-synaptic density protein SAP90/PSD-95, indicating possible functional involvement of Semas4F at glutamatergic synapses. Recent work also suggests a role for Sema4F in the injury response of intramedullary axotomized motoneuron. Sema4F belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulator molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 460

>gnl|CDD|200510 cd11249, Sema_3A, The Sema domain, a protein interacting module, of semaphorin 3A (Sema3A)

 Score =  159 bits (404), Expect = 2e-44
 Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 29/246 (11%)

Query: 36  PDFVGSYDIGKY-------VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNW 88
           P F+ ++ I +        ++FFFRE A++  + GK+  +R+ ++CK D GG   L   W
Sbjct: 199 PRFISAHLIPESDNPEDDKIYFFFRENAIDGEHTGKATHARIGQLCKNDFGGHRSLVNKW 258

Query: 89  ATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSF 143
            T+LKARL CS+PG      +F+E+QD++ +   D K    Y VFTTS+    GSA+C +
Sbjct: 259 TTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYAVFTTSSNIFKGSAVCMY 318

Query: 144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLNF 196
           S+ DI R F+G +  +      W+P    RVP PRPG C        + T+ LPD V+ F
Sbjct: 319 SMTDIRRVFLGPYAHRDGPNYQWVPFQ-GRVPYPRPGTCPSKTFGGFDSTKDLPDDVITF 377

Query: 197 IRSHPLMDEAVAHRDNKPVFYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAAT---TT 251
            RSHP M   V   +N+P+  + D+   FT +VVD V+ E      +Y V F  T   T 
Sbjct: 378 ARSHPAMYNPVFPINNRPIIIKTDVDYQFTQIVVDRVEAE----DGQYDVMFIGTDMGTV 433

Query: 252 LRTVFV 257
           L+ V +
Sbjct: 434 LKVVSI 439

Sema3A has been reported to inhibit the growth of certain experimental tumors and to regulate endothelial cell migration and apoptosis in vitro, as well as arteriogenesis in the muscle, skin vessel permeability, and tumor angiogenesis in vivo. The function of Sema3A is mediated through receptors neuropilin-1 (NP1) and plexins, although little is known about the requirement of specific plexins in its receptor complex. It is known however that Plexin-A4 is the receptor for Sema3A in the Toll-like receptor- and sepsis-induced cytokine storm during immune response. Sema3A is a member of the Class 3 semaphorin family of secreted proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 493

>gnl|CDD|200519 cd11258, Sema_4C, The Sema domain, a protein interacting module, of semaphorin 4C (Sema4C)

 Score =  157 bits (399), Expect = 6e-44
 Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 27/237 (11%)

Query: 35  QPDFVGS--------YDIGK--YVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNIL 84
           +P FVGS           G    ++FFF E AVEY    + V +RVARVCK D GG   L
Sbjct: 171 EPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCDSEQVVARVARVCKGDLGGARTL 230

Query: 85  SQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGD---DTKFYGVFTTSTTGLMGSAIC 141
            + W T+LKARL CSIP E+  YFN+++ ++ + G    +T F+ VF      +  SA+C
Sbjct: 231 QKKWTTFLKARLLCSIP-EWQLYFNQLKAVFTLEGASWRNTTFFAVFQARWGDMDVSAVC 289

Query: 142 SFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET---------LPDS 192
            + + +I++ F G +KE +     W       VP PRPG C+N+            LPD+
Sbjct: 290 EYQLGEIQQVFEGPYKEYSEQAQKWGRYTDP-VPSPRPGSCINNWHRDHGYTSSLELPDN 348

Query: 193 VLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
            LNF++ HPLM++ V  R  +P+    +  FTH+V   V          Y V F  T
Sbjct: 349 TLNFVKKHPLMEDRVKPRLGRPLLVPCNSNFTHVVWTRVLG---LDGETYSVLFIGT 402

Sema4C acts as a Plexin B2 ligand to regulate the development of cerebellar granule cells and to modulate ureteric branching in the developing kidney. The binding of Sema4C to Plexin B2 results the phosphorylation of downstream regulator ErbB-2 and the plexin protein itself. The cytoplasmic region of Sema4C binds a neurite-outgrowth-related protein SFAP75, suggesting that Sema4C may also play a role in neural function. Sema4C belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 458

>gnl|CDD|200520 cd11259, Sema_4D, The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)

 Score =  157 bits (399), Expect = 7e-44
 Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 21/218 (9%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFY 107
           ++FFF E +VEY   GK +  R+ARVCK D GG   L + W ++LKARL CSIP +    
Sbjct: 201 IYFFFTEVSVEYEFVGKLLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSIP-DKNLV 259

Query: 108 FNEIQDIY--KVPG-DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFV-GKFKEQAT-- 161
           FN + D++  K P   +   YGVFT     +  SA+C++++  +E  F  GK+ + AT  
Sbjct: 260 FNVVNDVFILKSPTLKEPVIYGVFTPQLNNVGLSAVCAYNLSTVEEVFSKGKYMQSATVE 319

Query: 162 -STSAWLPVLSSRVPEPRPGQCVND---------TETLPDSVLNFIRSHPLMDEAVAHRD 211
            S + W+   +  VP+PRPG C+N+         +  LPD  L F++ HPLMD++V    
Sbjct: 320 QSHTKWVR-YNGEVPKPRPGACINNEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIG 378

Query: 212 NKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
           N+P   ++D+ +T +VVD VQ  + GT   Y V F +T
Sbjct: 379 NRPRLIKKDVNYTQIVVDRVQ-ALDGTI--YDVMFIST 413

Sema4D/CD100 is expressed in immune cells and plays critical roles in immune response; it is thus termed an "immune semaphorin". It is expressed by lymphocytes and promotes the aggregation and survival of B lymphocytes and inhibits cytokine-induced migration of immune cells in vitro. Sema4D/CD100 knock-out mice demonstrate that Sema4D is required for normal activation of B and T lymphocytes. Sema4D increases B-cell and DC function using either Plexin B1 or CD72 as receptors. The function of Sema4D in immune response implicates its role in infectious and noninfectious diseases. Sema4D belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 471

>gnl|CDD|200515 cd11254, Sema_3F, The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)

 Score =  153 bits (388), Expect = 3e-42
 Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 28/223 (12%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           ++FFFRE ++E      +V SR+ RVC  D GG   L   W+T+LKARL CS+PG     
Sbjct: 197 LYFFFREKSLEAPQ-SPAVLSRIGRVCLNDDGGHCCLVNKWSTFLKARLVCSVPGADGIE 255

Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E++D++  P  DTK    Y VF+TS +   GSA+C +S+ DI   F G F  +   
Sbjct: 256 THFDELRDVFIQPTQDTKNPVIYAVFSTSGSVFKGSAVCVYSMADIRMVFNGPFAHKEGP 315

Query: 163 TSAWLPVLSSRVPEPRPGQC--------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
              W+P  + ++P PRPG C        +  T+  PD V+NF+R+HPLM  AV     +P
Sbjct: 316 NYQWMP-YTGKIPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYNAVYPVHRRP 374

Query: 215 VFYRRDL--LFTHLVVDVV-----QYEVF------GTTSEYIV 244
           +  R ++   FT + VD V     +YEV       GT  + IV
Sbjct: 375 LVVRTNVNYRFTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIV 417

Sema3F is coexpressed with semaphorin3B. Both Sema3B and Sema3F proteins are candidate tumor suppressors that are down-regulated in highly metastatic tumors. Two receptor families, the neuropilins and plexins, have been implicated in mediating the actions of semaphorins 3B and 3F. Sema3F is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 470

>gnl|CDD|200514 cd11253, Sema_3E, The Sema domain, a protein interacting module, of semaphorin 3E (Sema3E)

 Score =  148 bits (374), Expect = 2e-40
 Identities = 84/237 (35%), Positives = 120/237 (50%), Gaps = 27/237 (11%)

Query: 35  QPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN 87
           +P FVGSY I          V+FFF E A+E      ++++RV RVC  D GG+ +L   
Sbjct: 176 EPKFVGSYMIPDNEDPDDNKVYFFFTEKALEAEGGNHAIYTRVGRVCANDQGGQRMLVNK 235

Query: 88  WATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICS 142
           W+T+LK RL CS+PG      +F+E++D++ +   D K    +G+F+T++    G AIC 
Sbjct: 236 WSTFLKTRLICSVPGPNGIDTHFDELEDVFLLRTRDNKNPEIFGLFSTTSNIFKGYAICV 295

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC---VN-----DTETLPDSVL 194
           + +  I  AF G F  +      W  V   +VP PRPG C   VN      T+  PD  L
Sbjct: 296 YHMASIRAAFNGPFAHKEGPEYHW-SVYEGKVPYPRPGSCASKVNGGHYGTTKDYPDEAL 354

Query: 195 NFIRSHPLMDEAVAHRDNKPVFYRRD--LLFTHLVVDVVQYEVFGTTSEYIVYFAAT 249
            F RSHPLM +AV     +P+  + D       + VD V+ E      +Y V F  T
Sbjct: 355 RFARSHPLMYQAVKPVHKRPILVKTDGKYNLKQIAVDRVEAE----DGQYDVLFIGT 407

Sema3E is a secreted molecule implicated in axonal path finding and inhibition of developmental and postischemic angiogenesis. It is also highly expressed in metastatic cancer cells. Sema3E signaling, through its high affinity functional receptor Plexin D1, drives cancer cell invasiveness and metastatic spreading. Sema3E is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 471

>gnl|CDD|200516 cd11255, Sema_3G, The Sema domain, a protein interacting module, of semaphorin 3G (Sema3G)

 Score =  138 bits (350), Expect = 7e-37
 Identities = 87/270 (32%), Positives = 127/270 (47%), Gaps = 36/270 (13%)

Query: 3   ISRT--HRS-LYVASDERIKQIALVMCAHRY-DNCLQPDFVGSYDIGKYVFFFFRETAVE 58
           I R    RS L   +D+R+      + AH   DN  + +          V+FFF E A E
Sbjct: 154 IFRGFGTRSPLRTETDQRLLHEPRFVAAHLIPDNADRDN--------DKVYFFFTERATE 205

Query: 59  Y-INCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FPFYFNEIQDIY 115
              +   ++ SRV R+C  D GG+ +L   W+T++KARL CS+PG      +F++++D++
Sbjct: 206 TAEDDDGAIHSRVGRLCANDAGGQRVLVNKWSTFIKARLVCSVPGPHGIQTHFDQLEDVF 265

Query: 116 KVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSS 172
            +   D K    Y +F+T +    G A+C +S+ DI   F G F  +      W P    
Sbjct: 266 LLRTKDGKSPEIYALFSTISNVFQGFAVCVYSMADIWEVFNGPFAHKDGPDHQWGP-YEG 324

Query: 173 RVPEPRPGQC-----------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDL 221
           +VP PRPG C              T+  PD VL F R+HPLM   V     +PV  +  L
Sbjct: 325 KVPYPRPGVCPSKITAQPGRAFRSTKDYPDEVLQFARAHPLMWRPVYPSHRRPVLVKTGL 384

Query: 222 LF--THLVVDVVQYEVFGTTSEYIVYFAAT 249
            +  T +VVD V+ E       Y V F  T
Sbjct: 385 PYRLTQIVVDRVEAE----DGYYDVMFIGT 410

Semaphorin 3G is identified as a primarily endothelial cell- expressed class 3 semaphorin that controls endothelial and smooth muscle cell functions in autocrine and paracrine manners, respectively. It is mainly expressed in the lung and kidney, and a little in the brain. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 474

>gnl|CDD|200512 cd11251, Sema_3C, The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)

 Score =  134 bits (339), Expect = 2e-35
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           ++FF +E   +     K + S +ARVC  DTGG+  L   W T+LKARL CS+  E    
Sbjct: 196 LYFFLKERLTDNSGSTKQIHSMIARVCPNDTGGQRSLVNKWTTFLKARLVCSVMDEDGTE 255

Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E++D++ +  D+ +    YG+FTTS++   GSA+C + + DI+  F G F  +   
Sbjct: 256 THFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHMSDIQTVFNGPFAHKEGP 315

Query: 163 TSAWLPVLSSRVPEPRPGQC--------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKP 214
               +     R+P PRPG C        +  T+  PD V+ FIR+HPLM   +     +P
Sbjct: 316 NHQLIA-YQGRIPYPRPGTCPGGAFTPNMQSTKEFPDDVVTFIRNHPLMFNPIYPIGRRP 374

Query: 215 VFYR--RDLLFTHLVVDVV 231
           +  R   D  +T + VD V
Sbjct: 375 LLVRTGTDYKYTKIAVDRV 393

Sema3C is a secreted semaphorin expressed in and adjacent to cardiac neural crest cells, and causes impaired migration of neural crest cells to the developing cardiac outflow tract, resulting in the interruption of the aortic arch and persistent truncus arteriosus. It has been proposed that Sema3C acts as a guidance molecule, regulating migration of neural crest cells that express semaphorin receptors such as plexin A2. Sema3C may also participate in tumor progression. The cleavage of Sema3C induced by ADAMTS1 promotes the migration of breast cancer cells. Sema3C is a member of the class 3 semaphorin family of secreted proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 470

>gnl|CDD|200504 cd11243, Sema_7A, The Sema domain, a protein interacting module, of semaphorin 7A (Sema7A, also called CD108)

 Score =  121 bits (304), Expect = 8e-31
 Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 21/191 (10%)

Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILS-QNWATYLKARLNCSIPGEFPF 106
           +++FFRE   +     +   SRVAR+CK D GG + LS   W+T+LKARL C  P   P 
Sbjct: 169 IYYFFREDNEDKGPEAEPNISRVARLCKEDQGGTSSLSTSKWSTFLKARLVCGDPAT-PM 227

Query: 107 YFNEIQDIYKVPGD---DTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATST 163
            FN +QD++ +P +   +   YGVF+ +T G   SA+CS+S+ DI++ F          T
Sbjct: 228 NFNRLQDVFLLPKEEWREAVVYGVFS-NTWG--SSAVCSYSLGDIDKVF---------RT 275

Query: 164 SAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAV--AHRDNKPVFYRRDL 221
           S+ L   S  +P PRPG CV   +T P    +F   HP +D+ +        PVF  +D 
Sbjct: 276 SS-LKGYSGSLPNPRPGTCVPPEQTHPSETFSFADEHPELDDRIEPDEPRKLPVFQNKD- 333

Query: 222 LFTHLVVDVVQ 232
            +  +VVD V+
Sbjct: 334 HYQKVVVDEVR 344

Sema7A plays regulatory roles in both immune and nervous systems. Unlike other semaphorins, which act as repulsive guidance cues, Sema7A enhances central and peripheral axon growth and is required for proper axon tract formation during embryonic development. Sema7A also plays a critical role in the negative regulation of T cell activation and function. Sema7A is a membrane-anchored member of the semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module. Length = 414

>gnl|CDD|200495 cd09295, Sema, The Sema domain, a protein interacting module, of semaphorins and plexins

 Score = 88.8 bits (220), Expect = 1e-19
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 35  QPDFVGSYDIGK---YVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATY 91
           +  FV ++  G     V+FFFR+  VEY+  G     R+ARVCK D GG + L +   ++
Sbjct: 169 EITFVYAFVSGDDDDEVYFFFRQEPVEYLKKGMVYVPRIARVCKLDVGGCHRLKKKLTSF 228

Query: 92  LKARLNCSIPGEFPFYFNEIQDIY--KVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIE 149
           LKA LNCS P    F FN +QD             + +F++     + SA+C++   DI 
Sbjct: 229 LKADLNCSRPQS-GFAFNLLQDATGDTKNLIQDVKFAIFSSCLNKSVESAVCAYLFTDIN 287

Query: 150 RAF 152
             F
Sbjct: 288 NVF 290

Both semaphorins and plexins have a Sema domain on their N-termini. Plexins function as receptors for the semaphorins. Evolutionarily, plexins may be the ancestor of semaphorins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems, and cancer. Semaphorins can be divided into 7 classes. Vertebrates have members in classes 3-7, whereas classes 1 and 2 are known only in invertebrates. Class 2 and 3 semaphorins are secreted; classes 1 and 4 through 6 are transmembrane proteins; and class 7 is membrane associated via glycosylphosphatidylinositol (GPI) linkage. Plexins are a large family of transmembrane proteins, which are divided into four types (A-D) according to sequence similarity. In vertebrates, type A plexins serve as co-receptors for neuropilins to mediate the signalling of class 3 semaphorins. Plexins serve as direct receptors for several other members of the semaphorin family: class 6 semaphorins signal through type A plexins and class 4 semaphorins through type B plexins. This family also includes the MET and RON receptor tyrosine kinases. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves to recognize and bind receptors. Length = 392

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 280 LKQTVTWGQSVHLSCFVKLP-ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
              TV  G SV L C  K   AS+      W        R +     ++ +   + GL+I
Sbjct: 4   KVVTVVEGNSVFLECSPKSNLASVV-----WLFQGGPLQRKEE---PEERLLVTEDGLLI 55

Query: 339 MAVEELDAGKYDCWLG----NTVLCTHNLTVDAH 368
            +V   DAG Y C          L T++L V   
Sbjct: 56  RSVSPADAGVYTCQSVEHGFKQTLATYSLNVLEV 89

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|200537 cd11276, Sema_plexin_B2, The Sema domain, a protein interacting module, of Plexin B2

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 35/211 (16%)

Query: 37  DFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARL 96
            F  +++   YV+F F +     +       + +AR+C+ D         ++ +Y +  L
Sbjct: 191 QFRYAFEDNNYVYFLFNQQ----LGHPDKNRTLIARLCEND--------HHYYSYTEMDL 238

Query: 97  NCSIPGEFPFYFNEIQDIY-----KVPG--------DDTKFYGVFTTSTTGLMGSAICSF 143
           NC         +N+ Q  Y     K            D   + VF+        SA+C F
Sbjct: 239 NCRDGAN---AYNKCQAAYVSTPGKELAQNYGNSILSDKVLFAVFSRDEKDSGESALCMF 295

Query: 144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLM 203
            ++ I        +   T T     V        +   C +       +  +F      +
Sbjct: 296 PLKSINAKMEANREACYTGTIDDRDVFYKPFHSQKDIICGSHQ---QKNSKSFPCGSEHL 352

Query: 204 DEAVAHRDN----KPVFYRRDLLFTHLVVDV 230
              +  RD      PV  R  L  T + V V
Sbjct: 353 PYPLGSRDELALTAPVLQRGGLNLTAVTVAV 383

Plexin B2 serves as the receptor of Sema4C and Sema4G. By signaling the effect of Sema4C and Sema4G, the plexin B2 receptor plays important roles in neural tube closure and cerebellar granule cell development. Mice lacking Plexin B2 demonstrated defects in closure of the neural tube and disorganization of the embryonic brain. In developing kidney, Sema4C-Plexin B2 signaling modulates ureteric branching. Plexin B2 is expressed both in the pretubular aggregates and the ureteric epithelium in the developing kidney. Deletion of Plexin B2 results in renal hypoplasia and occasional double ureters. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module. Length = 449

>gnl|CDD|200506 cd11245, Sema_plexin_B, The Sema domain, a protein interacting module, of Plexin B

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 27  AHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQ 86
           A RY +    DFV ++    Y++F F            +  + ++R+C+ D         
Sbjct: 179 ASRYHH----DFVYAFADNGYIYFLFSRRPGT---ADSTKRTYISRLCEND--------H 223

Query: 87  NWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG----DDTKFYGVFTT---STTGLMG-S 138
           ++ +Y++  LNC++  E    +N +Q  Y        +    +GVF+    ST    G S
Sbjct: 224 HYYSYVELPLNCTVNQEN--TYNLVQAAYLAKPGKVLNGKVLFGVFSADEASTAAPDGRS 281

Query: 139 AICSFSIEDIERAF 152
           A+C + +  ++  F
Sbjct: 282 ALCMYPLSSVDARF 295

Plexins, which contain semaphorin domains, function as receptors of semaphorins and may be the ancestors of semaphorins. There are three members of the Plexin B subfamily, namely B1, B2 and B3. Plexins B1, B2 and B3 are receptors for Sema4D, Sema4C and Sema4G, and Sema5A, respectively. The activation of plexin B1 by Sema4D produces an acute collapse of axonal growth cones in hippocampal and retinal neurons over the early stages of neurite outgrowth and promotes branching and complexity. By signaling the effect of Sema4C and Sema4G, the plexin B2 receptor is critically involved in neural tube closure and cerebellar granule cell development. Plexin B3, the receptor of Sema5A, is a highly potent stimulator of neurite outgrowth of primary murine cerebellar neurons. Plexin B3 has been linked to verbal performance and white matter volume in human brain. Small GTPases play important roles in plexin B signaling. Plexin B1 activates Rho through Rho-specific guanine nucleotide exchange factors, leading to neurite retraction. Plexin B1 possesses an intrinsic GTPase-activating protein activity for R-Ras and induces growth cone collapse through R-Ras inactivation. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module. Length = 440

>gnl|CDD|200497 cd11236, Sema_plexin_like, The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)

Query: 37  DFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARL 96
            +V  +  G + +F   +   + ++      SR+ RVC+ D         N+ +Y +  L
Sbjct: 184 KYVYGFSSGGFSYFVTVQR--KSVDDESPYISRLVRVCQSD--------SNYYSYTEVPL 233

Query: 97  NCSIPGEFPFYFNEIQDIYKVP------------GDDTKFYGVFTTSTTG----LMGSAI 140
            C+  G     +N +Q  Y                DD   +GVF+ S          SA+
Sbjct: 234 QCT--GGDGTNYNLLQAAYVGKAGSDLARSLGISTDDDVLFGVFSKSKGPSAEPSSKSAL 291

Query: 141 CSFSIEDIERAF 152
           C FS++DIE AF
Sbjct: 292 CVFSMKDIEAAF 303

Plexins form a conserved family of transmembrane receptors for semaphorins and may be the ancestor of semaphorins. Ligand binding activates signal transduction pathways controlling axon guidance in the nervous system and other developmental processes including cell migration and morphogenesis, immune function, and tumor progression. Plexins are divided into four types (A-D) according to sequence similarity. In vertebrates, type A Plexins serve as the co-receptors for neuropilins to mediate the signalling of class 3 semaphorins except Sema3E, which signals through Plexin D1. Plexins serve as direct receptors for several other members of the semaphorin family: class 6 semaphorins signal through type A plexins and class 4 semaphorins through type B. Plexin C1 serves as the receptor of Sema7A and plays regulation roles in both immune and nervous systems. This family also includes the Met and RON receptor tyrosine kinases. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module. Length = 401

>gnl|CDD|200538 cd11277, Sema_plexin_B3, The Sema domain, a protein interacting module, of Plexin B3

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 30/122 (24%)

Query: 38  FVGSYDIGKYVFFFFR----ETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLK 93
           +VG++    YV+F FR        EY        + VARVC  DT        N  +Y++
Sbjct: 188 YVGAFAHNGYVYFLFRRRGARAQAEY-------RTYVARVCLGDT--------NLYSYVE 232

Query: 94  ARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTS----TTGLMGSAICSFSIEDIE 149
             L C         +N  Q  Y  PG  T F  VF        T    +A+C++ + +++
Sbjct: 233 VPLVCQGG------YNLAQAAYLAPGQGTLF-VVFAAGQGSTPTPTDQTALCAYPLVELD 285

Query: 150 RA 151
            A
Sbjct: 286 SA 287

Plexin B3 is the receptor of semaphorin 5A. It is a highly potent stimulator of neurite outgrowth of primary murine cerebellar neurons. Plexin B3 has been linked to verbal performance and white matter volume in human brain. Furthermore, Sema5A and plexin B3 have been implicated in the progression of various types of cancer. They play an important role in the invasion and metastasis of gastric carcinoma. The stimulation of plexin B3 by Sema5A binding in human glioma cells results in the inhibition of cell migration and invasion. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module. Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG3611|consensus	737		100.0
smart00630	390	Sema semaphorin domain.	100.0
PF01403	433	Sema: Sema domain; InterPro: IPR001627 The Sema do	100.0
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.65
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.34
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.23
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.12
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.94
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.9
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.89
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.87
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.86
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.84
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.84
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.82
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.81
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.78
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.77
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.76
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.76
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.75
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.74
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.73
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.72
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.72
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.71
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.7
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.66
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.64
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.64
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.64
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.64
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.64
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.63
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.63
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.62
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.61
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.6
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.6
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.6
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.59
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.58
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.58
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.58
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.58
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.57
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.57
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.56
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.56
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.56
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.55
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.54
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.53
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.53
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.53
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.52
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.52
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.49
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.48
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.47
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.45
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.44
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.43
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.42
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.41
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.4
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.39
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.39
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.38
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.38
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.37
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.36
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.36
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.34
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.31
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.29
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.28
KOG3513|consensus	1051		98.27
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.24
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.2
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.18
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.15
KOG4221|consensus	1381		98.14
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.12
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.1
PHA02826	227	IL-1 receptor-like protein; Provisional	98.1
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.08
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.08
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.08
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.08
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.07
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.07
smart00409	86	IG Immunoglobulin.	98.07
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.05
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.05
KOG3513|consensus	1051		98.03
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.97
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.96
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.94
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.94
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.92
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.85
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.83
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.81
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.79
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.74
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.74
PHA02785	326	IL-beta-binding protein; Provisional	97.74
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.7
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.63
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.63
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.6
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.59
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.58
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.56
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.55
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.55
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.5
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.48
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.46
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.45
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.45
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.43
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.39
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.39
PHA02785	326	IL-beta-binding protein; Provisional	97.39
PHA02826	227	IL-1 receptor-like protein; Provisional	97.24
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.23
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.23
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.13
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.11
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.08
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.06
KOG4221|consensus	1381		97.06
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.06
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.04
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.03
KOG4222|consensus	1281		97.02
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.93
KOG4194|consensus	873		96.92
smart00406	81	IGv Immunoglobulin V-Type.	96.89
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.88
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.86
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.84
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.78
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.72
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.7
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.66
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.4
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.33
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.08
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.02
PHA02633	63	hypothetical protein; Provisional	95.9
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	95.84
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.67
PHA03376	221	BARF1; Provisional	94.97
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	94.3
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	93.97
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	92.77
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	92.68
KOG4194|consensus	873		92.61
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	90.17
KOG1480|consensus	909		89.45
KOG4222|consensus	1281		89.05
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	87.57
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	87.35
KOG3515|consensus	741		86.51
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	83.75
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	82.39
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	81.82
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	80.66

>KOG3611|consensus

Probab=100.00  E-value=3.7e-80  Score=654.55  Aligned_cols=349  Identities=42%  Similarity=0.785  Sum_probs=298.9

Q ss_pred             CeEEEEEccccce----ee------eeeccccccCC--CCCceEEEEEeCCEEEEEEEeccccccccCceeeeeEeeccc
Q psy10772          8 RSLYVASDERIKQ----IA------LVMCAHRYDNC--LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCK   75 (378)
Q Consensus         8 ~~l~v~~~~~~~~----~~------~~~rt~~~ds~--~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sRVaRVCk   75 (378)
                      +.||.|+..+=-.    ++      ..|||+|||++  |+|+||++++++|+|||||||.++|+.++++.++||||||||
T Consensus       178 ~~Lys~t~~dF~g~d~~I~Rs~g~~~~lrT~~~dskwLneP~FV~a~~i~~~vyFFFrE~a~e~~~~~~~v~sRVARVCk  257 (737)
T KOG3611|consen  178 GELYSGTVADFLGSDALIYRSLGKNPTLRTVKYDSKWLNEPNFVGAFDIGDHVYFFFREIAVENNNCGKAVYSRVARVCK  257 (737)
T ss_pred             CEEEEEecccccCCCceEEEecCCCCCceeccCCchhccCCcEEEeeeeCCEEEEEecccccccCcccceEEeeeeeEec
Confidence            3477777543222    22      36899999999  999999999999999999999999977799999999999999


Q ss_pred             cccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC--CCcEEEEEEecccCCCCceeeeeeeHHHHHHHhc
Q psy10772         76 RDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG--DDTKFYGVFTTSTTGLMGSAICSFSIEDIERAFV  153 (378)
Q Consensus        76 ~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~--~~~~ly~vFtt~~~~~~~SAVC~ysl~dI~~~F~  153 (378)
                      ||.||+++|+++|||||||||+||+||+.+||||+||+||.+..  ..++|||+|||+++.+.+||||+|+|+||+++|+
T Consensus       258 nD~GG~~~l~~~WTSFLKARL~CSvp~~~~fyFn~lq~v~~~~~~~~~~~~YgvFtt~~n~~~~SAVC~f~l~dI~~vF~  337 (737)
T KOG3611|consen  258 NDVGGRRVLEKKWTSFLKARLNCSVPGDSPFYFNELQSVFLLVSLGGRDVFYAVFSTSSNSIPGSAVCAFSLSDIRAVFD  337 (737)
T ss_pred             cCCCCceEcccchhHhhhhheecccCCCCCCcccccceeeeccccCCCceEEEEEcccccCcceeEEecCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999986432  2348999999999999999999999999999999


Q ss_pred             cccccccCCCCceeeccCCCCCCCCCCCCCC--CCCCCCcccceeeccccCcccccccCCCceeEEec-CCcceEEEEEE
Q psy10772        154 GKFKEQATSTSAWLPVLSSRVPEPRPGQCVN--DTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRR-DLLFTHLVVDV  230 (378)
Q Consensus       154 g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~--~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~-~~~~T~IaVd~  230 (378)
                      |+||++++++++|+++...+||+||||+|++  +++++||++|+|||+||||+++|.|++++|+|++. +.+|||||||+
T Consensus       338 G~fk~q~~~~~~W~pv~~~~vP~PRPG~C~~~~ss~~lpd~vl~Fik~HpLM~~~V~p~~~~P~l~~~~~~~~t~I~Vd~  417 (737)
T KOG3611|consen  338 GPFKEQKGPNSAWLPVPGDKVPKPRPGTCANNGSSLDLPDDVLNFIKTHPLMDEAVPPVHGRPLLVKTGDYRLTQIVVDR  417 (737)
T ss_pred             CccccccCCcccceeccCCcCCCCCCCccCCCCCCCCCChhhhhhhhhCcccccccCCCCCCceEEecccceEEEEEEEE
Confidence            9999999999999997444999999999999  78999999999999999999999999999999998 79999999999


Q ss_pred             EEeeeecCCCeEEEEEEECCCeeEEEE-----------------------------------------------------
Q psy10772        231 VQYEVFGTTSEYIVYFAATTTLRTVFV-----------------------------------------------------  257 (378)
Q Consensus       231 v~~~~~~~~~~ytV~flGT~~G~v~~V-----------------------------------------------------  257 (378)
                      +++.    +++|+||||||++|+||||                                                     
T Consensus       418 ~~~~----~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qvpl~~  493 (737)
T KOG3611|consen  418 VAGL----DGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQVPLAR  493 (737)
T ss_pred             ecCC----CCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEeehhH
Confidence            8876    5999999999999999976                                                     


Q ss_pred             ----------------------------------eceeeeeccCCCC---Cccccc---------ccceeEEEEeCCeee
Q psy10772        258 ----------------------------------KVRLLQDVSNTSD---SICESS---------VGRLKQTVTWGQSVH  291 (378)
Q Consensus       258 ----------------------------------~~~~lqd~~~~~~---~~C~~~---------~~~k~~~~~~G~s~~  291 (378)
                                                        ...++|||+.++|   ..|.+.         .+++.+..+.+++..
T Consensus       494 C~~y~~C~dcclarDPYCAWd~~~~~C~~~~~~~~rs~~Qd~~~g~p~~~~~C~~~~~~~~~~~~~~~~v~~~~~~~~~~  573 (737)
T KOG3611|consen  494 CSRYGSCADCCLARDPYCAWDGVNSKCSLLSPTNRRSVIQDVSSGDPSSSLQCPGKPVDSPLVEKVELLVVVPVLAGSEV  573 (737)
T ss_pred             hhcccchhhhhhccCCCccccCCCCcceECCCCcccchhhhhcccCccchhhCCCCCcccccccccccccccccccccce
Confidence                                              1347899999996   678742         123555666666889


Q ss_pred             eeeeeccCCCCCCCCeEEEEecccCce-eeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCCeeeEEEeeeec
Q psy10772        292 LSCFVKLPASMANQPMSWYHYSKDKGR-YQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGNTVLCTHNLTVD  366 (378)
Q Consensus       292 L~C~~r~~~~La~~~v~W~~~~~~~~~-~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~~~l~~~~~~v~  366 (378)
                      |+|.+++..+    ++.|+++...+++ +++.  .+++...+.+| |+++.+++.|+|.|.|++.+...+...+.+.
T Consensus       574 l~c~~~~~~a----~~~w~~~~~~~~~~~~~~--~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~  644 (737)
T KOG3611|consen  574 LRCVPSSNQA----PVVWYHQSTKDGRKEEVR--QRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVN  644 (737)
T ss_pred             eecccccccc----ceeeEeeccCccccceec--cCcceeecccCceeEEEEeeccCcccccccccCccccceEEEe
Confidence            9999987766    5899999766444 3343  55666666677 9999999999999999999944444444443

>smart00630 Sema semaphorin domain

Probab=100.00  E-value=7.6e-65  Score=510.38  Aligned_cols=244  Identities=49%  Similarity=0.875  Sum_probs=223.2

Q ss_pred             eEEEEEccc--ccee--e-------------eeeccccccCC--CCCceEEEEEeCCEEEEEEEeccccccccCceeeee
Q psy10772          9 SLYVASDER--IKQI--A-------------LVMCAHRYDNC--LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSR   69 (378)
Q Consensus         9 ~l~v~~~~~--~~~~--~-------------~~~rt~~~ds~--~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sR   69 (378)
                      .||||+..+  +...  .             .++||++++++  ++|+||++|..|+||||||+|++.|.+.+++.++||
T Consensus        93 ~ly~gt~~~~~~~~~~i~r~~~~r~l~~~~~~~l~t~~~~~~~l~~~~FV~sf~~~~~vYFff~e~~~e~~~~~~~~~SR  172 (390)
T smart00630       93 ELYVGTVADFSGSDPAIPRSLSVRRLKGTSGVSLRTVLYDSKWLNEPNFVYAFESGDFVYFFFRETAVEDDNCGKAVHSR  172 (390)
T ss_pred             ceEEEEecccCCCCcceeccccccccccccCceeeccccCcccccCCcEEEEEEcCCEEEEEEEEEccccCcCCceeeee
Confidence            699999876  2222  1             16799999999  999999999999999999999999988899999999


Q ss_pred             EeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeeeeHH
Q psy10772         70 VARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSFSIE  146 (378)
Q Consensus        70 VaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~ysl~  146 (378)
                      ||||||+|.||+++|+++||||+||||+|+.+|+.+++||+|||||+++.   ++++|||||+++++++.+||||+|+|+
T Consensus       173 VaRVCk~D~Gg~~~l~~~wtSflka~L~Cs~~g~~~~~fn~lQ~v~~~~~g~~~~~vlygvFst~~~~~~~SAvC~f~l~  252 (390)
T smart00630      173 VARVCKNDVGGPRSLDKKWTSFLKARLECSVPGESPFYFNELQAAFLLPPGSESDDVLYGVFSTSSNPIPGSAVCAFSLK  252 (390)
T ss_pred             eeeecccCcCccccccccccEEEEEEEEecCCCcCCccchhhhheeecccCCCCCCEEEEEEeCCCCCCCccEEEEeEHH
Confidence            99999999999999999999999999999999988899999999999764   578999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCC---CCCCCCcccceeeccccCcccccccCCCceeEEec--CC
Q psy10772        147 DIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVN---DTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRR--DL  221 (378)
Q Consensus       147 dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~---~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~--~~  221 (378)
                      ||+++|+|+|+++.+.+++|..+..+.+|+||||+|.+   ++.++||++++|++.||||.+.|.|+.++|||++.  +.
T Consensus       253 ~I~~~F~~~~~~~~~~~~~~~~~~~~~vp~~rpg~C~~~~~~~~~~pd~~~~~~~~~pl~~~~v~p~~~~pl~~~~~~~~  332 (390)
T smart00630      253 DINAVFNGPFKECETSTSQWLPYSRGKVPFPRPGTCPNKPPSSKDLPDEVLNFIKSHPLMDEVVQPLTGRPLFVKTDSNY  332 (390)
T ss_pred             HHHHHHhhhhhhccCcCcceecccCCcCCCCCCCcCCCCCcccccCCchhhccccccccccccccccCCcceEEecCccc
Confidence            99999999999999888999875588999999999998   45589999999999999999999999999999985  56


Q ss_pred             cceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        222 LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       222 ~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      +||+||||+|+ .    .++|+|+||||++|+||||
T Consensus       333 ~lT~IaVd~v~-~----~~~~tV~flGT~~G~i~Kv  363 (390)
T smart00630      333 LLTSIAVDRVA-T----DGNYTVLFLGTSDGRILKV  363 (390)
T ss_pred             cEEEEEEEEEc-c----CCcEEEEEEECCCCeEEEE
Confidence            89999999986 3    3589999999999999999

>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance

Probab=100.00  E-value=2.6e-55  Score=447.31  Aligned_cols=245  Identities=47%  Similarity=0.831  Sum_probs=218.1

Q ss_pred             CeEEEEEcccccee----e------eeeccccccCC--CCCceEEEEEeC-------CEEEEEEEeccccccccCceeee
Q psy10772          8 RSLYVASDERIKQI----A------LVMCAHRYDNC--LQPDFVGSYDIG-------KYVFFFFRETAVEYINCGKSVFS   68 (378)
Q Consensus         8 ~~l~v~~~~~~~~~----~------~~~rt~~~ds~--~~p~FV~sf~~~-------d~VYFfF~E~a~e~~~~~~~~~s   68 (378)
                      +.||||+..+....    .      ..++|..++++  ++|+||++|.++       +||||||+|.+.|....++.++|
T Consensus       127 ~~lyvgt~~~~~~~~~~i~R~~~~~~~l~~~~~~~~~~~~p~fv~~~~~~~v~~f~~~~vYF~f~e~~~~~~~~~~~~~s  206 (433)
T PF01403_consen  127 GELYVGTTYDFSGSSPIISRSLGSQPPLRTEQYDSKWLNEPSFVSSFEIGYVYGFSDDFVYFFFRERASEYDSCGKPYYS  206 (433)
T ss_dssp             TEEEEEEESSTTSSSEEEEEEETSSSTEESCCCCTTSSSSTEEEEEEEEEECEEEETTEEEEEEEEEESSSSTSSCCEEE
T ss_pred             ccEEEeeeccccCCCcceeecccccccccccccccccccccccccccccccccccCCcEEEEEEEeecccccccccccee
Confidence            78999998774332    1      24678888877  899999999998       99999999999998878899999


Q ss_pred             eEeeccccccCCcccccccceeeeeeeeeccCCC-CCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeeee
Q psy10772         69 RVARVCKRDTGGKNILSQNWATYLKARLNCSIPG-EFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSFS  144 (378)
Q Consensus        69 RVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g-~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~ys  144 (378)
                      |||||||+|.||.+.++++|+||+||||+|+.+| ..+++||+||+++.++.   .+++|||+|++++++.++||||+|+
T Consensus       207 rvaRvCk~D~g~~~~~e~~wttf~karL~C~~~~~~~~~~fn~lq~~~~~~~~~~~~~vlyavFt~~~~~~~~SAvC~ys  286 (433)
T PF01403_consen  207 RVARVCKNDPGGYSYLEPLWTTFLKARLNCSVPGDGSPFYFNELQAVFVSKPGSGDDDVLYAVFTTSWNSSPGSAVCAYS  286 (433)
T ss_dssp             EEEEEETTSSTBSSSCCTBESSEEEEEEECEETTCSCTEECHEEEEEEEEECTTTTSEEEEEEEEESSSSSSCEEEEEEE
T ss_pred             eeeeccccCCccccchhhccccccccceeccccCcCCCchhhhhhhhccccccccCCceEEEEEEecccccCCceEEEEE
Confidence            9999999999999888899999999999999998 67899999999999875   3579999999999988999999999


Q ss_pred             HHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCCCceeEEecCC--c
Q psy10772        145 IEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDL--L  222 (378)
Q Consensus       145 l~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~--~  222 (378)
                      |+||+++|+|+|+++.+..+.|+++ .+.+|+|||+.|.+.+..++++++.|++.||||.+.|.|+.++|+|++.+.  +
T Consensus       287 l~~I~~~F~g~~~~~~~~~~~~~~~-~~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~p~~~~~~~~~~  365 (433)
T PF01403_consen  287 LSDINQAFNGPFKCCDGSTSKWLPY-PNSVPSPRPGQCPNSSSNLPDETLCFIKNHPLMDESVQPISGQPLFTRQGVNYR  365 (433)
T ss_dssp             HHHHHHHHCSHBEECCSCHTTBCCT-TSCCCSSSTTC-TTSTTGSHHHHHHHHHHSSBBCSEBS-CCGSCSEEEETSSS-
T ss_pred             HHHHHHHhhcchhhcccccCccccc-cCcccCCcccccccccccCccccccccccccCccccccCCCCcceeeeccccce
Confidence            9999999999999998788999985 559999999999999888999999999999999999999999999999876  8


Q ss_pred             ceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        223 FTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       223 ~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      ||+|+|++|++.    ++.|+|+||||++|+|||+
T Consensus       366 ~T~i~v~~v~~~----~~~~tV~flGT~~G~l~K~  396 (433)
T PF01403_consen  366 LTSIAVDRVQVE----NGSYTVAFLGTDDGRLHKK  396 (433)
T ss_dssp             EEEEEEEEEEET----TTCEEEEEEEETTSEEEEE
T ss_pred             eeEEEEEEEecC----CCcEEEEEEecCCceEEEE
Confidence            999999987765    3449999999999999964

Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.65  E-value=4.8e-16  Score=124.41  Aligned_cols=78  Identities=21%  Similarity=0.374  Sum_probs=70.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .|.+++..|++++|+|.++++.|    .+.|++|+.+     |.  +++++..+.+||||++++.+|+|.|.|++.|   
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~~A----~v~W~~ng~~-----l~--~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf   71 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSNLA----SPVWLFNGTP-----LN--AQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGF   71 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCCCc----cEEEEECCcc-----cC--CCcceEEeCCCCEEEECCHhhCEEEEEEEecCCC
Confidence            46889999999999999988755    7999999876     54  6778999999999999999999999999998   


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       +++++|.|.|-+
T Consensus        72 ~~~~~~y~l~v~~   84 (85)
T cd05872          72 QQLVASYSLNVVE   84 (85)
T ss_pred             eEEEEEEEEEEeC
Confidence             999999998854

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.34  E-value=2.8e-12  Score=103.10  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=61.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+++.+|+++.|.|.+.++  +  |+|+|++|+.+     |.. .+.++...+++|+|.+++.+|+|.|+|.+.+   
T Consensus         3 P~~~~v~~G~~v~L~C~~~~~--~--~~i~W~~ng~~-----i~~-~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~~   72 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKSN--L--ARVVWKFDGKV-----LTP-ESAKYLLYRDGLLIFNASEADAGRYQCLSVEKSK   72 (87)
T ss_pred             cceEEEECCCCEEEEEECCCC--C--CeEEEEECCEE-----CCC-CCceEEEECCcEEEeCCCHHHCEEEEEEEEeccc
Confidence            467889999999999998654  2  47999999865     431 2246777889999999999999999999998   


Q ss_pred             -----eeeEEEee
Q psy10772        356 -----TVLCTHNL  363 (378)
Q Consensus       356 -----~~l~~~~~  363 (378)
                           ++++.|.|
T Consensus        73 ~~~~~~~~~~~~~   85 (87)
T cd05873          73 AKLFTQTVAKYVL   85 (87)
T ss_pred             CceeEeEEEeeee
Confidence                 47888887

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.23  E-value=4.2e-11  Score=95.61  Aligned_cols=83  Identities=28%  Similarity=0.343  Sum_probs=65.2

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..+.+.+.+|+++.|+|.+++|.    +.+.|++|+.......+   ...++.....+|+|.+++.+|+|.|.|.+.+  
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~p~----~~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~   74 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKSNL----ASVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHG   74 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCCCC----ceEEEEECCcccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCc
Confidence            35778899999999999987643    48999999865211000   1245666778999999999999999999987  


Q ss_pred             --eeeEEEeeeecc
Q psy10772        356 --TVLCTHNLTVDA  367 (378)
Q Consensus       356 --~~l~~~~~~v~~  367 (378)
                        ...++|.|.|.+
T Consensus        75 ~~~~~~~~~l~V~~   88 (89)
T cd04979          75 FKQTLATYSLNVLE   88 (89)
T ss_pred             cceeEeEEEEEEec
Confidence              499999999986

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.12  E-value=4.2e-10  Score=91.00  Aligned_cols=85  Identities=20%  Similarity=0.318  Sum_probs=64.7

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      +++.+++.+|+++.|+|..+.|    .|.+.|+.+....... .....+.++...+.+|.|.+++.+|+|.|.|.+.+  
T Consensus         2 ~~~~~~~~eG~~v~L~C~~~~p----~p~v~Wykq~~g~~~~-~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           2 EEKVVYGVENNSTFLECLPKSP----QASVKWLFQRGGDQRK-EEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             cceEEEEecCCcEEEEEECCCC----CceEEEEEECCCCCcc-ccccccccEEEecCeEEEeeCChhHCEEEEEEEEccC
Confidence            4678899999999999997533    2589999875432110 11113456777888999999999999999999975  


Q ss_pred             --eeeEEEeeeecc
Q psy10772        356 --TVLCTHNLTVDA  367 (378)
Q Consensus       356 --~~l~~~~~~v~~  367 (378)
                        ++++.+.|+|-.
T Consensus        77 ~~~~~~~~~l~v~~   90 (91)
T cd05871          77 FSQTLAKYTLHVIE   90 (91)
T ss_pred             CeEEEEEEEEEEec
Confidence              789999998854

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.94  E-value=2.5e-09  Score=82.08  Aligned_cols=69  Identities=29%  Similarity=0.464  Sum_probs=51.8

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~---~~l~~~~  362 (378)
                      |+++.|.|.+.+.+.   |.++|++++.+     +.  .++++...+.| |+|.+|+.+|+|.|.|.+.|   ...++..
T Consensus         1 G~~v~L~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   70 (73)
T cd04969           1 GGDVIIECKPKAAPK---PTISWSKGTEL-----LT--NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGS   70 (73)
T ss_pred             CCeEEEEEeeeEcCC---CEEEEEECCEE-----cc--cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence            788999999876543   68999988653     43  44455544444 99999999999999999998   5556666


Q ss_pred             eee
Q psy10772        363 LTV  365 (378)
Q Consensus       363 ~~v  365 (378)
                      |.|
T Consensus        71 l~V   73 (73)
T cd04969          71 LSV   73 (73)
T ss_pred             EEC
Confidence            554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.90  E-value=4e-09  Score=81.65  Aligned_cols=68  Identities=28%  Similarity=0.478  Sum_probs=50.0

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec-CceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~  362 (378)
                      |+++.|+|.+++.|.   |.|+|+.++..     +.  ++.++.+.. .-|.|.+++.+|+|.|.|.+.|   ....+-.
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~k~~~~-----l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   70 (73)
T cd05852           1 GGRVIIECKPKAAPK---PKFSWSKGTEL-----LV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGV   70 (73)
T ss_pred             CCeEEEEEecceeCC---CEEEEEeCCEe-----cc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence            788999999876543   68999987643     42  445555544 4599999999999999999998   3444444


Q ss_pred             ee
Q psy10772        363 LT  364 (378)
Q Consensus       363 ~~  364 (378)
                      |+
T Consensus        71 l~   72 (73)
T cd05852          71 LS   72 (73)
T ss_pred             EE
Confidence            43

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.89  E-value=4.3e-09  Score=81.10  Aligned_cols=70  Identities=26%  Similarity=0.344  Sum_probs=51.4

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      +|+++.|.|...+.|.   |.++|+.++.+     +.  .+.++.. ...-|.|.+++..|+|.|.|.+.|   ..-++.
T Consensus         1 eG~~v~l~C~~~g~P~---p~i~W~k~g~~-----~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   70 (74)
T cd05745           1 EGQTVDFLCEAQGYPQ---PVIAWTKGGSQ-----LS--VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVA   70 (74)
T ss_pred             CCCeEEEEeECCEecC---CEEEEEECCEE-----CC--CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence            5899999999876654   78999987653     32  3334433 344599999999999999999998   455555


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|+|
T Consensus        71 ~L~V   74 (74)
T cd05745          71 QLTV   74 (74)
T ss_pred             EEeC
Confidence            5543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.87  E-value=8.8e-09  Score=82.40  Aligned_cols=78  Identities=21%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..+.+.+.+|+++.|.|...+.+.   |.|+|+.++.+     +.  .+.++...+.-|.|.+++.+|+|.|.|.+.|  
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~---P~v~W~k~~~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPV---PVIRWRKILEP-----MP--ATAEISMSGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCC---CEEEEEECCcC-----CC--CCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            356778899999999999876655   78999988754     32  2333444444599999999999999999998  


Q ss_pred             -eeeEEEeeee
Q psy10772        356 -TVLCTHNLTV  365 (378)
Q Consensus       356 -~~l~~~~~~v  365 (378)
                       ..-++-.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence             4444444544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.86  E-value=7.9e-09  Score=83.07  Aligned_cols=77  Identities=22%  Similarity=0.327  Sum_probs=56.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ec----CceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VD----GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~----~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+++.+|+++.|.|...+.+.   |.+.|+.++.+     +.  .++++.. ..    .-|.|.+++.+|+|.|.|.+
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   77 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPD---PEVSWLKNDQA-----LA--LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVV   77 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCC---CeEEEEECCEE-----Cc--cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEE
Confidence            34678999999999999875544   68999998754     32  2332222 12    13999999999999999999


Q ss_pred             CC---eeeEEEeeee
Q psy10772        354 GN---TVLCTHNLTV  365 (378)
Q Consensus       354 ~~---~~l~~~~~~v  365 (378)
                      .|   ...+.+.|.|
T Consensus        78 ~N~~G~~~~~~~v~v   92 (92)
T cd05737          78 KNKYGGETVDVTVSV   92 (92)
T ss_pred             EECCCcceEEEEEeC
Confidence            97   6666666654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.84  E-value=1.2e-08  Score=79.92  Aligned_cols=74  Identities=16%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      .+.+.+|+++.|.|....+.    +.|.|+.++.+     |.  .+.++...+.-|.|.+++..|+|.|.|.+.|   ..
T Consensus         3 ~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~-----l~--~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDDV----QSINWTKDGVQ-----LG--ENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             cEEecCCCCEEEEEEecCCC----ceEEEeeCCcC-----CC--CCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            46778999999999987642    47999998765     53  4445555566699999999999999999976   33


Q ss_pred             eEEEeeee
Q psy10772        358 LCTHNLTV  365 (378)
Q Consensus       358 l~~~~~~v  365 (378)
                      ...+.|+|
T Consensus        72 ~~~~~v~V   79 (79)
T cd04973          72 TTYFSVNV   79 (79)
T ss_pred             cEEEEEeC
Confidence            44444443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.84  E-value=1.6e-08  Score=80.62  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--c--CceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--D--GGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~--~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+..|+.+.|.|...+.|.   |.|+|+.++.+     |.. .++++...  +  .-|.|.++..+|+|.|.|.+.
T Consensus         2 ~~~~~v~~G~~v~l~c~~~G~P~---P~v~W~k~~~~-----i~~-~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   72 (86)
T cd05894           2 ENTIVVVAGNKLRLDVPISGEPA---PTVTWSRGDKA-----FTE-TEGRVRVESYKDLSSFVIEGAEREDEGVYTITVT   72 (86)
T ss_pred             CCEEEEEcCCEEEEEeeEeecCC---CeEEEEECCEE-----Ccc-CCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEE
Confidence            35788999999999999876544   78999988754     321 12233322  1  249999999999999999999


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      |   ..-++..|+|
T Consensus        73 N~~G~~~~~~~l~V   86 (86)
T cd05894          73 NPVGEDHASLFVKV   86 (86)
T ss_pred             eCCCcEEEEEEEEC
Confidence            8   6667777765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.82  E-value=2.3e-08  Score=81.80  Aligned_cols=82  Identities=24%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+..|+++.|.|...+-+.   |.+.|+.++++     |.  .++++...    ..-|.|.++...|+|.|.|.+.
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~p~---p~v~W~kdg~~-----l~--~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           7 PEDMKVRAGESVELFCKVTGTQP---ITCTWMKFRKQ-----IQ--EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CcCEEEECCCEEEEEEEEcccCC---CceEEEECCEE-----ec--CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence            45678899999999999975543   68999988764     43  33343332    2239999999999999999999


Q ss_pred             C---eeeEEEeeeeccccc
Q psy10772        355 N---TVLCTHNLTVDAHSN  370 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~c  370 (378)
                      |   ..-++..|+|.+.+.
T Consensus        77 N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          77 NKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             cCCCceeEEEEEEEecCCC
Confidence            8   788899999998763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.81  E-value=1.7e-08  Score=78.21  Aligned_cols=71  Identities=23%  Similarity=0.404  Sum_probs=52.4

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~  362 (378)
                      |+++.|.|...+.|.   |.++|+.++.+     +... ...++...+..|.|.+++.+|+|.|.|.+.|   ...+.-.
T Consensus         1 G~~v~l~C~~~G~P~---p~i~W~k~g~~-----i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (76)
T cd05867           1 GETARLDCQVEGIPT---PNITWSINGAP-----IEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAH   72 (76)
T ss_pred             CCeEEEEEEeeEeCC---CeEEEEECCEE-----CCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEE
Confidence            789999999876544   68999988754     3211 1224445556699999999999999999998   6666666


Q ss_pred             eee
Q psy10772        363 LTV  365 (378)
Q Consensus       363 ~~v  365 (378)
                      |.|
T Consensus        73 l~V   75 (76)
T cd05867          73 VHV   75 (76)
T ss_pred             EEE
Confidence            655

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.78  E-value=2.2e-08  Score=79.40  Aligned_cols=76  Identities=21%  Similarity=0.357  Sum_probs=58.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+..|+++.|.|...+.+.   |.+.|+.++.+     +.  .+.++....+-|.|.+++..|+|.|.|.+.|   
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~-----~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPR---PAYRWLKNGQP-----LA--SENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCC---CEEEEEECCEE-----CC--CCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence            35577889999999999886654   68999988754     42  4455666677799999999999999999998   


Q ss_pred             eeeEEEeee
Q psy10772        356 TVLCTHNLT  364 (378)
Q Consensus       356 ~~l~~~~~~  364 (378)
                      ...++-.|+
T Consensus        76 ~~~~~~~l~   84 (85)
T cd05728          76 TIYASAELA   84 (85)
T ss_pred             eEEEEEEEE
Confidence            444444444

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.77  E-value=2.6e-08  Score=76.27  Aligned_cols=67  Identities=18%  Similarity=0.407  Sum_probs=49.0

Q ss_pred             eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772        289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLT  364 (378)
Q Consensus       289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~  364 (378)
                      ++.|+|...+.|.   |.|+|+.++.+     +.  +++++. ..+..|.|.+++.+|+|.|.|.+.|   ...++-.|.
T Consensus         1 ~v~l~C~~~G~P~---p~v~W~k~g~~-----~~--~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPT---PTVKWVKNGDM-----VI--PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCC---CEEEEEECCeE-----CC--CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            4789999976544   78999988753     32  333333 3456799999999999999999998   555555554


Q ss_pred             e
Q psy10772        365 V  365 (378)
Q Consensus       365 v  365 (378)
                      |
T Consensus        71 V   71 (71)
T cd05723          71 I   71 (71)
T ss_pred             C
Confidence            3

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.76  E-value=1.9e-08  Score=78.37  Aligned_cols=67  Identities=25%  Similarity=0.427  Sum_probs=48.5

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCc---eEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGG---LVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~G---LlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      +.|+|.+.+.|.   |.|+|++++..     |.. .++++..  .+.|   |.|.+++.+|+|.|.|.+.|   ...|+-
T Consensus         1 v~l~C~v~G~P~---P~i~W~k~~~~-----i~~-~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a   71 (75)
T cd05892           1 VKLECQISAIPP---PKIFWKRNNEM-----VQY-NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA   71 (75)
T ss_pred             CEEEEEEEecCC---CeEEEEECCEE-----CcC-CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence            468999876644   79999998754     431 2234333  2333   99999999999999999998   666666


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|.|
T Consensus        72 ~L~V   75 (75)
T cd05892          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            6654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.76  E-value=3.3e-08  Score=81.56  Aligned_cols=77  Identities=22%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             ceeEEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcc-eEee--------cCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTV--------DGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~--------~~GLlI~~v~~~DsG~  348 (378)
                      ...+.+..|+++.|.|.+.+ +|.   |.++|+.++.+     |.  .+.. +...        ..-|.|.+|..+|+|.
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~---p~v~W~Kdg~~-----i~--~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   79 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPP---PHINWTYDNRT-----LT--NKLTEIVTSENESEYRYVSELKLVRLKESEAGT   79 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCC---CccEEEeCCee-----CC--CCcceeEEEeccCcceEEEEEEEeecCHhhCee
Confidence            45678899999999999987 655   68999998765     32  1222 2221        2449999999999999


Q ss_pred             EEEEeCC---eeeEEEeeee
Q psy10772        349 YDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       349 Y~C~~~~---~~l~~~~~~v  365 (378)
                      |.|.+.|   ..-+.+.|.|
T Consensus        80 Ytc~A~N~~G~~~~t~~L~V   99 (101)
T cd04975          80 YTFLASNSDASKSLTFELYV   99 (101)
T ss_pred             EEEEEECCCccEEEEEEEEE
Confidence            9999997   5555666665

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.75  E-value=3.6e-08  Score=78.34  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+.+|+++.|+|...+.+.   |.|+|++++..     +.  ........+.-|.|.+|+.+|+|.|.|.+.|   
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPV---PQIKWRKVDGS-----MP--SSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCC---CEEEEEECCCc-----CC--CccEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence            35567889999999999876544   68999987653     21  2222233455689999999999999999987   


Q ss_pred             eeeEEEeeee
Q psy10772        356 TVLCTHNLTV  365 (378)
Q Consensus       356 ~~l~~~~~~v  365 (378)
                      ...++-.|+|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            4555555554

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.74  E-value=4.3e-08  Score=77.38  Aligned_cols=77  Identities=32%  Similarity=0.482  Sum_probs=58.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.+.|+.++.+     |.  .++++.....+    |.|.+++..|+|.|.|.+.
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~---~~v~W~~~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPP---PTVTWYKNGRP-----LT--SSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSS---SEEEEEETTEE-----EE--SSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCC---Ccccccccccc-----ee--eeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence            46788999999999999976544   58999998654     43  34444443333    9999999999999999999


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      +   ...++..|+|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            8   5666666655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.73  E-value=3.9e-08  Score=79.34  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCCe-
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGNT-  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~~-  356 (378)
                      +.+.+.+|+++.|.|...+.    .|.|.|+.++..     +.   ++++....  .-|.|.+|+.+|+|.|.|.+.|. 
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~----~p~i~W~kng~~-----l~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ----ATYIWWVNNGSL-----LV---PPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEV   78 (91)
T ss_pred             CccccccCCcEEEEEEeCCC----CCEEEEEECCEE-----CC---CCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            56788899999999998765    368999988754     32   22333332  34999999999999999999882 


Q ss_pred             ---eeEEEeeee
Q psy10772        357 ---VLCTHNLTV  365 (378)
Q Consensus       357 ---~l~~~~~~v  365 (378)
                         .-..+.|+|
T Consensus        79 G~~~S~~~~L~V   90 (91)
T cd05740          79 SNMTSDPYILNV   90 (91)
T ss_pred             CCEEeeeEEEEe
Confidence               223555555

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.72  E-value=4.8e-08  Score=78.43  Aligned_cols=67  Identities=24%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|+|...+.+.   |.+.|++++..     |.  .++++.+..    .-|.|.+++.+|+|.|.|.+.
T Consensus        10 p~~~~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747          10 PRSLTVSEGESARFSCDVDGEPA---PTVTWMREGQI-----IV--SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CccEEEeCCCcEEEEEEEeecCC---CEEEEEECCEE-----CC--CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence            45688999999999999876554   68999988653     32  333433332    248999999999999999999


Q ss_pred             C
Q psy10772        355 N  355 (378)
Q Consensus       355 ~  355 (378)
                      |
T Consensus        80 N   80 (92)
T cd05747          80 N   80 (92)
T ss_pred             c
Confidence            8

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.72  E-value=5.4e-08  Score=76.36  Aligned_cols=68  Identities=24%  Similarity=0.440  Sum_probs=49.9

Q ss_pred             ceeEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|.+ .+.+   .|.+.|++++.+     +.. .+.++.. .+.-|.|.+++.+|+|.|.|.+.|
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~-----~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   72 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQP-----LNL-DNERVRIVDDGNLLIAEARKSDEGTYKCVATN   72 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEE-----CCC-CCCCEEEccCCEEEEeECCcccCEEEEEEEEe
Confidence            356788899999999986 4433   368999998754     321 1233333 345699999999999999999998

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.71  E-value=6.5e-08  Score=78.42  Aligned_cols=68  Identities=24%  Similarity=0.395  Sum_probs=52.2

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+..|+++.|.|...+.|.    +++|+..+..    .+.  .+.++....+|    |.|.++..+|+|.|.|.+
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~----~~~--~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGE----KIV--SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC----eEEEEeCCCe----Eec--CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence            456778999999999999887653    6999864321    243  44555555555    999999999999999999


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .|
T Consensus        76 ~N   77 (92)
T cd05866          76 TD   77 (92)
T ss_pred             Ec
Confidence            98

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.70  E-value=4.6e-08  Score=76.83  Aligned_cols=76  Identities=22%  Similarity=0.376  Sum_probs=55.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc---eEe--ecCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF---IRT--VDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~---~~~--~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      |.+.+.+|+++.|.|...+.+.   |.++|+.++.+     |.  .+.+   +..  ...-|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~~~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~-----l~--~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05857           2 KLHAVPAANTVKFRCPAAGNPT---PTMRWLKNGKE-----FK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE   71 (85)
T ss_pred             ccEEcCCCCEEEEEEEcCCCCC---CEEEEEECCEE-----CC--CCCceeeeEEeCCceEEEEccCCcccCEEEEEEEE
Confidence            4567888999999999876543   68999998754     32  1111   111  12248899999999999999999


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      |   ..-+++.|+|
T Consensus        72 N~~G~~~~~~~l~v   85 (85)
T cd05857          72 NEYGSINHTYHLDV   85 (85)
T ss_pred             eCCCEEEEEEEEEC
Confidence            8   6777777765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.66  E-value=6.5e-08  Score=75.01  Aligned_cols=67  Identities=25%  Similarity=0.372  Sum_probs=47.9

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cC---ceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DG---GLVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~---GLlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      +.|+|.+.+.|.   |.|+|++++..     |.. .++++.+.  +.   -|.|.+++.+|+|.|.|.+.|   ...++.
T Consensus         1 v~L~C~v~G~P~---P~v~W~k~~~~-----i~~-~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   71 (75)
T cd05744           1 VRLECRVSAIPP---PQIFWKKNNEM-----LTY-NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA   71 (75)
T ss_pred             CEEEEEEeecCC---CeEEEEECCEE-----CCC-CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence            469999876655   78999998754     321 22343332  22   299999999999999999988   666666


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|+|
T Consensus        72 ~l~v   75 (75)
T cd05744          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            6654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.64  E-value=7.4e-08  Score=74.59  Aligned_cols=76  Identities=21%  Similarity=0.351  Sum_probs=52.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      |.+....|+++.|.|...+.+.   |.++|+.++..     +.  .+.....  ...-|.|.+++.+|+|.|.|.+.|  
T Consensus         2 ~~~~~~~G~~v~L~C~~~g~p~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   71 (82)
T cd05856           2 RVIARPVGSSVRLKCVASGNPR---PDITWLKDNKP-----LT--PTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRA   71 (82)
T ss_pred             cceeccCCCeEEEEEEeeEeCC---CcEEEEECCcC-----Cc--CCccceecCceEEEEEccCChhhCEEEEEEEEcCC
Confidence            4455677999999999864433   68999988754     32  1111111  123488999999999999999987  


Q ss_pred             -eeeEEEeeee
Q psy10772        356 -TVLCTHNLTV  365 (378)
Q Consensus       356 -~~l~~~~~~v  365 (378)
                       ..-+.+.|+|
T Consensus        72 G~~~~~~~v~v   82 (82)
T cd05856          72 GEINATYKVDV   82 (82)
T ss_pred             ccEEEEEEEeC
Confidence             4555555543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.64  E-value=8.5e-08  Score=76.75  Aligned_cols=74  Identities=24%  Similarity=0.446  Sum_probs=54.9

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEee----cC-ceEEeeecCCCCeEEEEEeCC---eee
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTV----DG-GLVIMAVEELDAGKYDCWLGN---TVL  358 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~----~~-GLlI~~v~~~DsG~Y~C~~~~---~~l  358 (378)
                      +++.|.|.+...+.|+ +.+.|++|+.+     |.. ..+.++...    +. -|+|++++..|+|.|.|.+.+   +.-
T Consensus         1 ~~~~l~C~v~~d~~l~-~~~~W~~dg~~-----i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853           1 ESIVLPCQVSHDHSLD-IVFTWSFNGHL-----IDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             CcEEEEEEeccCCCCC-cEEEEEECCEE-----CcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            4788999987656665 47999999865     543 233344441    33 499999999999999999998   667


Q ss_pred             EEEeeeecc
Q psy10772        359 CTHNLTVDA  367 (378)
Q Consensus       359 ~~~~~~v~~  367 (378)
                      ++=.|+|..
T Consensus        75 a~a~L~V~~   83 (85)
T cd05853          75 AAADLIVRG   83 (85)
T ss_pred             EEEEEEEec
Confidence            777777764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.64  E-value=1.6e-07  Score=76.35  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC--CCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA--SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~--~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .|...+.+|+.+.|.|......  .-+.+.|+|+.++.+..   +......|+...+.-|.|.+++.+|+|.|.|.+.|.
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~---~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~   82 (94)
T cd05756           6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP---IPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNS   82 (94)
T ss_pred             eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc---ccccccceeeecCCeEEEccCCcccCeEEEEEEcCC
Confidence            4678899999999999875410  01235899999875410   110123344444455889999999999999999984


Q ss_pred             e
Q psy10772        357 V  357 (378)
Q Consensus       357 ~  357 (378)
                      .
T Consensus        83 ~   83 (94)
T cd05756          83 T   83 (94)
T ss_pred             C
Confidence            4

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.64  E-value=1.4e-07  Score=75.31  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=55.3

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecC-ceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDG-GLVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~-GLlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      |+++.|.|...+.+.   |.|.|+.++...-.+... .....++.+... -|.|.+|+.+|+|.|.|.+.|   ...++.
T Consensus         1 G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQ---PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCC---CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            788999999865543   689998875431000000 012345555433 488999999999999999998   788888


Q ss_pred             eeeeccc
Q psy10772        362 NLTVDAH  368 (378)
Q Consensus       362 ~~~v~~~  368 (378)
                      .|.|.+.
T Consensus        78 ~l~V~~~   84 (90)
T cd05726          78 YLEVTDV   84 (90)
T ss_pred             EEEEeec
Confidence            8988764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.64  E-value=9.2e-08  Score=74.29  Aligned_cols=71  Identities=18%  Similarity=0.310  Sum_probs=51.7

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~  362 (378)
                      |+++.|.|...+.|.   |.|+|+.++.+     |...+.. .....+..|.|.+++..|+|.|.|.+.|   ...++-.
T Consensus         1 g~~~~l~C~a~G~P~---P~i~W~k~g~~-----i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd05868           1 GEDGTLICRANGNPK---PSISWLTNGVP-----IEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF   72 (76)
T ss_pred             CCCEEEEEEeeEeCC---CeEEEEECCEE-----ccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence            678999999876644   79999998764     4321222 2233344688899999999999999998   6666666


Q ss_pred             eee
Q psy10772        363 LTV  365 (378)
Q Consensus       363 ~~v  365 (378)
                      |.|
T Consensus        73 l~v   75 (76)
T cd05868          73 VNV   75 (76)
T ss_pred             EEe
Confidence            655

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.63  E-value=1.3e-07  Score=76.00  Aligned_cols=79  Identities=25%  Similarity=0.373  Sum_probs=57.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC--
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..+.+..|+++.|.|...+.+.   |.|+|+.++..     +.. .+.++....  ..|.|.+++.+|+|.|.|.+.|  
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~-----~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPE---PTMTWTKDGEP-----IES-GEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA   81 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCC---CEEEEEECCEE-----CcC-CCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence            3467888999999999876543   68999988653     321 112333222  3499999999999999999998  


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       ..-++..|.|-+
T Consensus        82 G~~~~~~~L~V~~   94 (95)
T cd05730          82 GEQEAEIHLKVFA   94 (95)
T ss_pred             CeEEEEEEEEEEe
Confidence             667777777643

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.63  E-value=9.3e-08  Score=73.34  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~  362 (378)
                      |+++.|.|...+.+.   |.|+|++++.+     +...... +....+.-|.|.+++..|+|.|.|.+.|   ...++-.
T Consensus         1 G~~~~l~C~~~g~P~---p~i~W~~~g~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd04978           1 GETGRLDCEAEGIPQ---PTITWRLNGVP-----IEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF   72 (76)
T ss_pred             CCeEEEEEEceeeCC---CEEEEEECCEE-----CCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence            788999999865443   68999988754     3211111 2333455699999999999999999998   6666666


Q ss_pred             eee
Q psy10772        363 LTV  365 (378)
Q Consensus       363 ~~v  365 (378)
                      |.|
T Consensus        73 l~V   75 (76)
T cd04978          73 VHV   75 (76)
T ss_pred             EEE
Confidence            655

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.62  E-value=7.8e-08  Score=78.75  Aligned_cols=70  Identities=26%  Similarity=0.377  Sum_probs=54.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTV-DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+...+.+|+.+.|.|.+  |...+.+.+.|+.++.+     +.+..+. ++... ++.|.|.+|+.+|+|.|.|.+.|
T Consensus        10 ~~~~~v~eG~~~~L~C~p--P~g~P~p~~~W~k~~~~-----~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDP--PPHYPDLSYRWLLNEFP-----NFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             cCceeeeeCCcEEEeeCC--CCCCCCCEEEEEECCcc-----cccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence            445678999999999998  88888889999998754     2111233 44444 35599999999999999999986

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.61  E-value=2.4e-07  Score=71.81  Aligned_cols=74  Identities=24%  Similarity=0.435  Sum_probs=50.3

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc---ceEeec-CceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK---FIRTVD-GGLVIMAVEELDAGKYDCWLGN---TVLC  359 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~---~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~---~~l~  359 (378)
                      |+++.|.|...+.+.   |.|+|+.+.....+  +...++.   ++.... .-|.|.+++.+|+|.|.|.+.|   ...+
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPP---PEITWEKQVHGKEN--LIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCC---CcEEEEecCCCCcc--eeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            788999998865543   68999987432111  2211221   222333 3499999999999999999998   6666


Q ss_pred             EEeeee
Q psy10772        360 THNLTV  365 (378)
Q Consensus       360 ~~~~~v  365 (378)
                      ...|+|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            776665

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.60  E-value=1.7e-07  Score=75.51  Aligned_cols=76  Identities=24%  Similarity=0.380  Sum_probs=51.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC-----ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG-----GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~-----GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+...+..|+++.|.|...+.+    +.++|+.....    .+.  +..++.....     -|.|.+++.+|+|.|.|.+
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p----~~i~W~~~~~~----~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEP----KDISWFSPNGE----KLV--TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeC----CeEEEECCCCC----Eec--cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence            4557788999999999987652    37999863221    132  2223222222     3999999999999999999


Q ss_pred             CCe----eeEEEeee
Q psy10772        354 GNT----VLCTHNLT  364 (378)
Q Consensus       354 ~~~----~l~~~~~~  364 (378)
                      .|.    .-++..|+
T Consensus        77 ~N~~g~~~~~sv~l~   91 (92)
T cd04977          77 TDAKGTESEATVNLK   91 (92)
T ss_pred             EcCCCCcceeEEEEE
Confidence            983    34455544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.60  E-value=8.5e-08  Score=77.68  Aligned_cols=62  Identities=26%  Similarity=0.426  Sum_probs=47.8

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~  355 (378)
                      +|+.+.|.|...+.+.   |.|+|++++.+     |....+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus        18 ~g~~v~l~C~~~G~P~---P~i~W~k~g~~-----l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05848          18 DEKKVILNCEARGNPV---PTYRWLRNGTE-----IDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN   80 (94)
T ss_pred             CCCEEEEEEEeeecCC---CEEEEEECCeE-----CccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence            4789999999876654   78999988754     4322233455667789999985 6999999999998

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.60  E-value=1.3e-07  Score=76.21  Aligned_cols=69  Identities=23%  Similarity=0.359  Sum_probs=50.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeee-----cCCCCeEEEEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAV-----EELDAGKYDCWL  353 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v-----~~~DsG~Y~C~~  353 (378)
                      +.+.+.+|+++.|.|.+.+.+   .|.++|++++..     |....+.++.. .+++|+|.++     +..|+|.|.|.+
T Consensus         7 ~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~-----l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           7 SDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVL-----LNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             CCeEEcCCCCEEEeeecccCC---CCEEEEEECCeE-----CccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence            456778899999999987654   368999998754     33112222333 3445888888     589999999999


Q ss_pred             CCe
Q psy10772        354 GNT  356 (378)
Q Consensus       354 ~~~  356 (378)
                      .|.
T Consensus        79 ~N~   81 (95)
T cd05722          79 QND   81 (95)
T ss_pred             ECC
Confidence            886

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.59  E-value=8.4e-08  Score=73.61  Aligned_cols=66  Identities=29%  Similarity=0.362  Sum_probs=47.5

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v  365 (378)
                      +.|.|...+.|.   |.++|+.++.+     |.  .+.++...+.-|.|.+++.+|+|.|.|.+.|   ....+..++|
T Consensus         1 ~~l~c~v~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPP---PEIQWYKNGKL-----IS--EKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCC---CEEEEEECCEE-----CC--CCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            468999876654   68999998754     43  3344445556699999999999999999998   3344444443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.58  E-value=2e-07  Score=74.63  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--------CceEEeeecCCCCeEEEEEeCC---
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--------GGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--------~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      |+.+.|.|...+.+   ++.++|+.++..     |.. ...++.+..        .-|.|.++..+|+|.|.|.+.|   
T Consensus         1 g~~~~l~C~~~g~p---~~~i~W~k~~~~-----i~~-~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G   71 (88)
T cd05735           1 GQKKEMSCTAHGEK---PIIVRWEKEDRI-----INP-EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYG   71 (88)
T ss_pred             CCeEEEEEEEECCC---CCEEEEeeCCEE-----CCC-CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCC
Confidence            78899999997653   368999987743     221 112222211        2388999999999999999998   


Q ss_pred             eeeEEEeeeeccccc
Q psy10772        356 TVLCTHNLTVDAHSN  370 (378)
Q Consensus       356 ~~l~~~~~~v~~~~c  370 (378)
                      ..-+...|.|.+.+.
T Consensus        72 ~~~~~~~L~V~~~P~   86 (88)
T cd05735          72 EDRGIIQLTVQEPPD   86 (88)
T ss_pred             cceEEEEEEEeCCCC
Confidence            778999999987644

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.58  E-value=2.5e-07  Score=75.57  Aligned_cols=79  Identities=24%  Similarity=0.416  Sum_probs=54.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE-ecccCceeeEeeccCcceEee-c----CceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTV-D----GGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~-~~~~~~~~~l~~~~~~~~~~~-~----~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+...+..|+++.|.|.+.+.+.  +|.++|+. ++..     |. ..+.++.+. .    .-|.|.+++.+|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~-----l~-~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAK--DKDISWFSPNGEK-----LT-PNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCC--CCEEEEECCCCcC-----cc-ccCCeEEEEeCCCCceEEEEeccChhhCEEEEEE
Confidence            34556888999999999876543  25899997 5543     32 112233322 1    2499999999999999999


Q ss_pred             eCCe----eeEEEeeee
Q psy10772        353 LGNT----VLCTHNLTV  365 (378)
Q Consensus       353 ~~~~----~l~~~~~~v  365 (378)
                      +.|.    ..++-+|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            9983    456666654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.58  E-value=1.5e-07  Score=72.01  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=48.3

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v  365 (378)
                      +.|+|...+.|.   |.|+|+.++.+     +.  .+.. +...+.-|.|.+++.+|+|.|.|.+.|   ..-.++.|+|
T Consensus         1 ~~L~C~~~G~P~---P~v~W~k~~~~-----~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPT---PEVHWDRIDGP-----LS--PNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecC---CeEEEEECCcC-----CC--CCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            368999876655   78999988754     32  2221 222345689999999999999999998   5666777766


Q ss_pred             c
Q psy10772        366 D  366 (378)
Q Consensus       366 ~  366 (378)
                      +
T Consensus        71 e   71 (71)
T cd05876          71 E   71 (71)
T ss_pred             C
Confidence            3

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.58  E-value=1.1e-07  Score=77.01  Aligned_cols=61  Identities=30%  Similarity=0.499  Sum_probs=46.1

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~  355 (378)
                      |+++.|.|..++.+.   |.++|++|+.+     |....+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus        19 g~~v~l~C~a~g~P~---p~i~W~~~g~~-----l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850          19 EEKVTLGCRARASPP---ATYRWKMNGTE-----IKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CCeEEEEeEceeCCC---CEEEEEECCEE-----CccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence            578999999876544   68999998764     4322334555566679898866 5999999999997

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.58  E-value=1.1e-07  Score=73.98  Aligned_cols=59  Identities=24%  Similarity=0.421  Sum_probs=43.4

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+++.|.|...+.|.   |.|+|++++.+     +.  .+.++....    .-|.|.+++.+|+|.|.|.+.|
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   63 (78)
T cd05743           1 GETVEFTCVATGVPT---PIINWRLNWGH-----VP--DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN   63 (78)
T ss_pred             CCEEEEEEEEEEecC---CEEEEEECCeE-----CC--CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEe
Confidence            789999999976554   68999987643     21  223332221    2399999999999999999987

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.57  E-value=2.2e-07  Score=75.34  Aligned_cols=78  Identities=29%  Similarity=0.325  Sum_probs=55.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCC--CCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASM--ANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~L--a~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+..|.++.|.|........  +.|.|+|+.++.+     |.  .+++......-|.|.+|+.+|+|.|.|.+.+   
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~-----i~--~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL-----LE--GDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEE-----CC--CCccEEecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            4677889999999975322111  3568999998864     43  3333333566799999999999999999985   


Q ss_pred             ----eeeEEEeeee
Q psy10772        356 ----TVLCTHNLTV  365 (378)
Q Consensus       356 ----~~l~~~~~~v  365 (378)
                          ..-..++|+|
T Consensus        77 ~~~~~~t~t~~l~v   90 (92)
T cd05757          77 GKQYNVTRTISLTV   90 (92)
T ss_pred             CEEEEEEEEEEEEE
Confidence                3444555554

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.57  E-value=1.4e-07  Score=72.71  Aligned_cols=58  Identities=26%  Similarity=0.462  Sum_probs=42.2

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|.+.+.+.   |.|+|+.++.+     +....+.++...+.| |+|.+++.+|+|.|.|.+.|
T Consensus         1 a~l~C~~~G~P~---p~v~W~k~~~~-----~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N   59 (74)
T cd05738           1 ATMLCAASGNPD---PEITWFKDFLP-----VDTTSNGRIKQLRSGALQIENSEESDQGKYECVATN   59 (74)
T ss_pred             CEEEEEEeEecC---CEEEEEECCEE-----CccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEEC
Confidence            468998876544   68999998653     321133455554444 78899999999999999997

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.56  E-value=3.3e-07  Score=74.46  Aligned_cols=80  Identities=21%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEeec----CceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTVD----GGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C  351 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.+....   .+..   ..+.|+....    .-|.|.+|+.+|+|.|.|
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~---~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C   81 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPI---PEITWKRASDGH---TFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC   81 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCC---CeEEEEECCCCc---eeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence            46788999999999999865543   689998753221   1210   1223444322    349999999999999999


Q ss_pred             EeCC---eeeEEEeee
Q psy10772        352 WLGN---TVLCTHNLT  364 (378)
Q Consensus       352 ~~~~---~~l~~~~~~  364 (378)
                      .+.|   ....+..|+
T Consensus        82 ~A~N~~G~~~~~~~l~   97 (98)
T cd05870          82 EAASRIGGHQKSMYLD   97 (98)
T ss_pred             EEeccCCcceeEEEEe
Confidence            9987   334444443

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.56  E-value=1.3e-07  Score=71.85  Aligned_cols=56  Identities=21%  Similarity=0.434  Sum_probs=41.8

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.+.   |.++|+.++.+     |.  .+.++... +.-|.|.+++.+|+|.|.|.+.|
T Consensus         1 v~L~C~~~g~P~---p~i~W~k~g~~-----~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   57 (69)
T cd05746           1 VQIPCSAQGDPE---PTITWNKDGVQ-----VT--ESGKFHISPEGYLAIRDVGVADQGRYECVARN   57 (69)
T ss_pred             CEeEecceEeCC---CEEEEEECCEE-----CC--CCCCEEECCCCEEEECcCChhhCEEEEEEEEC
Confidence            468999876654   68999987643     32  33344443 44599999999999999999987

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.56  E-value=1.9e-07  Score=70.70  Aligned_cols=66  Identities=24%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v  365 (378)
                      +.|.|...+.+.   |.++|+.++..     +.  .+......+..|.|.+++.+|+|.|.|.+.|   ..-++-.|.|
T Consensus         1 v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPV---PTVLWRKEDGE-----LP--KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCC---CEEEEEECCcc-----CC--CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            468998865443   68999998543     31  2222223455699999999999999999998   4445555543

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.55  E-value=3.1e-07  Score=75.64  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=56.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e---------ecCceEEeeecCCCCeEEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T---------VDGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~---------~~~GLlI~~v~~~DsG~Y~  350 (378)
                      ...+..|.++.|+|.+.+.|.   |.++|+.++.+     |.  .+.+.. .         ...-|.|.+++.+|+|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~---P~v~W~kdg~~-----l~--~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Yt   81 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPP---PQIRWLKDNRT-----LI--ENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYT   81 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCC---CceEEEECCEE-----Cc--CCcceEEeccccccceeeccEEEEeeCCHHHCEEEE
Confidence            667888999999999987655   68999998865     32  222211 1         1235999999999999999


Q ss_pred             EEeCC---eeeEEEeeeec
Q psy10772        351 CWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       351 C~~~~---~~l~~~~~~v~  366 (378)
                      |.+.|   ..-+++.|.|.
T Consensus        82 c~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          82 ALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EEEEcCCceEEEEEEEEEE
Confidence            99998   44456666653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.54  E-value=2.3e-07  Score=74.81  Aligned_cols=75  Identities=21%  Similarity=0.318  Sum_probs=52.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e-ec---CceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T-VD---GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~-~~---~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+++.+|+++.|.|...+.+.   |.+.|+.++.+     +.  .+.++. . ..   ..|.|.+++.+|+|.|.|.+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   77 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPD---PEVIWFKNDQD-----IE--LSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV   77 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCC---CeEEEEECCEE-----CC--CCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE
Confidence            45788999999999998765443   68999998653     22  222221 1 11   25999999999999999999


Q ss_pred             CC---eeeEEEee
Q psy10772        354 GN---TVLCTHNL  363 (378)
Q Consensus       354 ~~---~~l~~~~~  363 (378)
                      .|   ...++-.|
T Consensus        78 ~N~~G~~~~~~~v   90 (92)
T cd05891          78 KNKYGGETVDVTV   90 (92)
T ss_pred             EeCCCceeeEEEE
Confidence            97   44444444

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.53  E-value=2.1e-07  Score=72.37  Aligned_cols=67  Identities=27%  Similarity=0.404  Sum_probs=46.9

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--c---eEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--G---LVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--G---LlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      +.|+|.+.+.|.   |.|+|+.++.+     |. ..++++.....  |   |.|.+++.+|+|.|.|.+.|   +..++-
T Consensus         1 v~l~C~v~G~P~---P~v~W~k~~~~-----l~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a   71 (75)
T cd05893           1 VRLECRVSGVPH---PQIFWKKENES-----LT-HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA   71 (75)
T ss_pred             CEEEEEEeEecC---CEEEEEECCEE-----CC-CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence            469999887655   79999998654     32 12234444322  2   88999999999999999998   455554


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|.|
T Consensus        72 ~L~V   75 (75)
T cd05893          72 RLDV   75 (75)
T ss_pred             EEeC
Confidence            4443

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.53  E-value=1.9e-07  Score=76.26  Aligned_cols=71  Identities=27%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCe-EEEEEeCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAG-KYDCWLGNT  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG-~Y~C~~~~~  356 (378)
                      .+.+.+.+|+.+.|+|.+  |...+.|.|.|+.+...    -+.  .+.|+..+..| |.|.+|+.+|+| .|.|.+.+.
T Consensus        10 ~~~v~V~eG~~~~L~C~p--P~g~P~P~i~W~~~~~~----~i~--~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~   81 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNP--PKSAVPLRIYWMNSDLL----HIT--QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP   81 (95)
T ss_pred             cceeEEecCCCEEEEecC--CCCCCCCEEEEECCCCc----ccc--ccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence            466889999999999985  55666689999855432    132  46677776545 999999999999 899999974


Q ss_pred             e
Q psy10772        357 V  357 (378)
Q Consensus       357 ~  357 (378)
                      .
T Consensus        82 ~   82 (95)
T cd05845          82 G   82 (95)
T ss_pred             c
Confidence            4

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.53  E-value=3.1e-07  Score=70.39  Aligned_cols=67  Identities=28%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             eeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      ++.|.|...+.|.   |.++|+.++.+     |.  .+.++.+.    ..-|.|.+++.+|+|.|.|.+.|   ..-++.
T Consensus         1 ~~~l~c~~~G~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05748           1 SVRLEVPISGRPT---PTVTWSKDGKP-----LK--LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI   70 (74)
T ss_pred             CEEEEeeEeeeCC---CeEEEEECCEE-----cC--CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence            3679999876655   78999988754     32  23333222    22499999999999999999998   555555


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|.|
T Consensus        71 ~l~V   74 (74)
T cd05748          71 NVKV   74 (74)
T ss_pred             EEEC
Confidence            5543

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.52  E-value=4.8e-07  Score=69.27  Aligned_cols=60  Identities=22%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce-EeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI-RTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~-~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+++.|+|.+.+.+.   |.|+|+.+...    .+.  ...+. ...++-|.|.+++.+|+|.|.|.+.|
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~~~~~~----~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   61 (74)
T cd05764           1 GQRATLRCKARGDPE---PAIHWISPDGK----LIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASN   61 (74)
T ss_pred             CCeEEEEEEccCcCC---CEEEEEeCCCE----Eec--CCCeEEEecCCEEEEEECChhhCEEEEEEEEC
Confidence            788999999876544   68999874322    122  22332 23345699999999999999999998

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.52  E-value=5e-07  Score=72.52  Aligned_cols=69  Identities=23%  Similarity=0.310  Sum_probs=49.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEee----cCceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTV----DGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C  351 (378)
                      .+...+.+|+++.|.|...+.+.   |.|+|+.++..     +..   ..+.++.+.    ...|.|.+|+.+|+|.|.|
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~---p~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPI---PEITWRRATRN-----FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC   79 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCC---CcEEEEECCcc-----cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence            35678899999999999875543   68999987643     210   011222222    2359999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      .+.|
T Consensus        80 ~a~N   83 (96)
T cd05732          80 EASN   83 (96)
T ss_pred             EEEe
Confidence            9998

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.49  E-value=7e-07  Score=71.37  Aligned_cols=69  Identities=20%  Similarity=0.355  Sum_probs=47.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcc-eEeecCceEEeee-----cCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKF-IRTVDGGLVIMAV-----EELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~-~~~~~~GLlI~~v-----~~~DsG~Y  349 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|++++..     +..   ....+ +...++++++..+     +.+|+|.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~-----l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           8 PSDLIVSKGDPATLNCKAEGRPT---PTIQWLKNGQP-----LETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CceeEEcCCCeEEEEeeCCcCCC---CEEEEEECCEE-----CccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            35678889999999999876544   68999998754     321   01122 2233444554444     68999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|.+.|
T Consensus        80 ~C~a~N   85 (100)
T cd07693          80 VCVAHN   85 (100)
T ss_pred             EEEEEc
Confidence            999998

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.48  E-value=2.6e-07  Score=71.64  Aligned_cols=57  Identities=26%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|+|.+.+.|.   |.++|+.++.+     |.. ...++...+..|.|.+++.+|+|.|.|.+.+
T Consensus         1 ~~l~c~v~g~P~---P~v~W~kdg~~-----l~~-~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~   57 (72)
T cd07702           1 YRLTPKVKAFPA---PEVIWLKDGLP-----AAE-KCSRYHVDGYSLVIKDVTEEDAGIYTILLGI   57 (72)
T ss_pred             CeEEeeEEEcCC---CeEEEEECCEE-----CCC-CCcEEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence            368999875554   78999998754     431 1133444444699999999999999999987

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.47  E-value=6.3e-07  Score=68.95  Aligned_cols=69  Identities=20%  Similarity=0.358  Sum_probs=45.6

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLT  364 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~  364 (378)
                      +.|.|...+.|.   |.|+|+.++.+.    +....+.++..  .+.-|.|.+++.+|+|.|.|.+.|   ...++-.|+
T Consensus         1 a~l~C~~~G~P~---P~v~W~k~~~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPT---PQIAWQKDGGTD----FPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccC---CEEEEEeCCCcc----CCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            368998765544   789999986531    11112223332  234588999999999999999988   455555555


Q ss_pred             e
Q psy10772        365 V  365 (378)
Q Consensus       365 v  365 (378)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            5

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.45  E-value=5.3e-07  Score=71.15  Aligned_cols=74  Identities=22%  Similarity=0.441  Sum_probs=51.1

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-Ccc---e-Ee-ecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-DKF---I-RT-VDGGLVIMAVEELDAGKYDCWLGN---TVL  358 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-~~~---~-~~-~~~GLlI~~v~~~DsG~Y~C~~~~---~~l  358 (378)
                      +++.|.|...+.+... ..++|++++.+     |.... +..   . .. ...-|.|.+++..|+|.|.|.+.|   ...
T Consensus         1 e~~~L~C~~~g~P~p~-i~~~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLD-LTFTWSFNGVP-----IDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             CcEEEEEEEecCCCCC-eEEEEEECCeE-----eeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            4688999997655411 14689988754     43211 111   1 11 233499999999999999999998   678


Q ss_pred             EEEeeeecc
Q psy10772        359 CTHNLTVDA  367 (378)
Q Consensus       359 ~~~~~~v~~  367 (378)
                      ++..|.|..
T Consensus        75 ~~~~l~V~~   83 (85)
T cd04970          75 ASADLIVRG   83 (85)
T ss_pred             EEEEEEEEC
Confidence            888888876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.45  E-value=1e-06  Score=70.39  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce--Eee--cCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RTV--DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~~--~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+.+..|+.+.|.|...+.|.   |.|+|+.++..     +.  .+...  ...  ..-|.|.++..+|.|.|.|.+.|
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N   77 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPL---PKVEWIIAGLI-----VI--QTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN   77 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCC---CeEEEEECCEE-----cc--CCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC
Confidence            4455889999999999986554   79999998753     22  11111  111  12489999999999999999998


Q ss_pred             ---eeeEEEeeee
Q psy10772        356 ---TVLCTHNLTV  365 (378)
Q Consensus       356 ---~~l~~~~~~v  365 (378)
                         +..++..|+|
T Consensus        78 ~~G~~~~~~~L~v   90 (90)
T cd04972          78 PVGQANVSVQVTV   90 (90)
T ss_pred             CCCceeEEEEEeC
Confidence               4555555543

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.44  E-value=6.3e-07  Score=71.67  Aligned_cols=63  Identities=30%  Similarity=0.525  Sum_probs=41.7

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc--eE--------eec---CceEEeeecCCCCeEEEEEe
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF--IR--------TVD---GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~--~~--------~~~---~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      |+++.|.|...+.|.   |.|+|+......+. ++.  ++.+  ..        ..+   .-|+|.+|+.+|+|.|.|.+
T Consensus         1 G~~v~L~C~~~g~P~---P~i~W~k~~~~~g~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   74 (90)
T cd05858           1 GSTVEFVCKVYSDAQ---PHIQWLKHVEKNGS-KYG--PDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLA   74 (90)
T ss_pred             CCeEEEEEEEecCCC---CEEEEEEecccCCc-EeC--CCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEE
Confidence            789999999875544   78999985422111 121  1110  11        111   23999999999999999999


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .|
T Consensus        75 ~N   76 (90)
T cd05858          75 GN   76 (90)
T ss_pred             Ee
Confidence            87

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.43  E-value=5.8e-07  Score=69.89  Aligned_cols=57  Identities=18%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.|.   |.|+|+.++.+     |.. ...++...  +.-|.|.+++.+|+|.|.|.+.|
T Consensus         1 v~L~C~~~g~P~---p~v~W~k~g~~-----l~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   59 (77)
T cd05760           1 VTLRCHIDGHPR---PTYQWFRDGTP-----LSD-GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHN   59 (77)
T ss_pred             CEEEEEeeecCC---CcEEEEECCEE-----CCC-CCccEEEeCCCCEEEEeeCCcccCEEEEEEEEe
Confidence            468998865543   68999988754     431 11222222  23499999999999999999998

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.42  E-value=1.4e-06  Score=70.59  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             EEEEe-CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---ccCcceEeec----CceEEeeecCCCCeEEEEEe
Q psy10772        282 QTVTW-GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---RSDKFIRTVD----GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       282 ~~~~~-G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.. |+++.|.|...+.+.   |.|+|++++..     +..   ..+.++....    ..|.|.+|+.+|+|.|.|.+
T Consensus        11 ~~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A   82 (97)
T cd05869          11 QTAMELEEQITLTCEASGDPI---PSITWRTSTRN-----ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA   82 (97)
T ss_pred             ceEEEcCCCEEEEEEeeEeCC---CEEEEEECCcc-----ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence            34444 799999999986544   68999987643     210   0112333222    35999999999999999999


Q ss_pred             CC---eeeEEEeeee
Q psy10772        354 GN---TVLCTHNLTV  365 (378)
Q Consensus       354 ~~---~~l~~~~~~v  365 (378)
                      .|   ...++-.|+|
T Consensus        83 ~N~~G~~~~~~~l~v   97 (97)
T cd05869          83 SNTIGQDSQSMYLEV   97 (97)
T ss_pred             ecCCCCeeEEEEEEC
Confidence            98   4444444443

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.41  E-value=8.6e-07  Score=67.73  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+++.|.|...+.|.   |.|+|+.++.+     |.  .+.++......|.|.++  .|+|.|.|.+.|
T Consensus         1 G~~v~L~C~a~G~P~---P~v~W~k~g~~-----l~--~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N   57 (69)
T cd05739           1 GGSVNLTCVAVGAPM---PYVKWMKGGEE-----LT--KEDEMPVGRNVLELTNI--YESANYTCVAIS   57 (69)
T ss_pred             CCeEEEEEEeeecCC---CEEEEEECCEE-----CC--CccceecCccEEEEecc--ccCeeEEEEEEe
Confidence            688999999987655   78999988653     32  33333333445888887  489999999997

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.40  E-value=9.8e-07  Score=71.93  Aligned_cols=72  Identities=26%  Similarity=0.379  Sum_probs=49.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc---CceeeEeeccCcceEee-----cCceEEeeecCCCCeEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~---~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y~  350 (378)
                      -+.+++.+|+++.|.|.....+.   |.|.|+..+..   .+.+.+.  .+.|+...     +.-|.|.+|+.+|+|.|.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~---~~v~W~k~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~L~I~nV~~~D~G~Yt   78 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDN---SSLQWSNTAQQTLYFGEKRAL--RDNRIQLVKSTPTELIISISNVQLSDEGEYT   78 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCC---CeEEEeccCccEEEeCCeEEE--eCCeEEEEeCCCceEEEEECCCCcccCEEEE
Confidence            46789999999999999876543   68999765532   0111111  23343322     234999999999999999


Q ss_pred             EEeCC
Q psy10772        351 CWLGN  355 (378)
Q Consensus       351 C~~~~  355 (378)
                      |.+.-
T Consensus        79 C~~~t   83 (95)
T cd05882          79 CSIFT   83 (95)
T ss_pred             EEEEe
Confidence            99875

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.40  E-value=4.4e-07  Score=69.77  Aligned_cols=54  Identities=24%  Similarity=0.253  Sum_probs=40.7

Q ss_pred             eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|+|...+.|.   |.++|+.|+.+     |.  .+.+ ...+.-|.|.++..+|+|.|.|.+.|
T Consensus         2 ~~~c~v~G~P~---P~v~W~k~g~~-----l~--~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N   55 (70)
T cd05864           2 KIPVKYYGYPP---PEVKWYKNGQL-----IV--LNHT-FKRGVHLTIYEVTEKDAGNYTVVLTN   55 (70)
T ss_pred             EEEeEEEEeCC---CEEEEEECCEE-----CC--CCCE-EccCCEEEECcCCHHHCEEEEEEEEE
Confidence            57898876554   78999998865     43  2222 22334599999999999999999987

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.39  E-value=7.5e-07  Score=71.27  Aligned_cols=64  Identities=27%  Similarity=0.423  Sum_probs=46.6

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC-CCCeEEEEEeCCe
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGNT  356 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~~  356 (378)
                      ..|+.+.|.|...+.+.   |.++|++++.+     |......++...+..|+|.++.. .|+|.|.|.+.|.
T Consensus        17 ~~~~~~~l~C~~~g~p~---p~i~W~k~~~~-----l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967          17 SDEGKVSLNCRARGSPP---PTYRWLMNGTE-----IDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CCCCEEEEEEeeeEcCC---CEEEEEECCEE-----CCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence            34578999999865433   68999987653     42222345556677899998875 8999999999873

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.39  E-value=1e-06  Score=71.51  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=48.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecC--------ceEEeeecCCC-CeEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDG--------GLVIMAVEELD-AGKY  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--------GLlI~~v~~~D-sG~Y  349 (378)
                      +.+.+..|+++.|.|.+.+.+.   | .|+|+.++..     |....+.++.+...        -|.|.+++.+| +|.|
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~---P~~v~W~~~~~~-----i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPP---PDRIVWTWKENE-----LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCC---CCEeEEEECCEE-----ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            4567889999999999976444   5 4999988753     32111223333222        39999999955 9999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|.+.|
T Consensus        81 ~C~A~N   86 (98)
T cd05758          81 NCTAWN   86 (98)
T ss_pred             EEEEEc
Confidence            999987

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.38  E-value=9.3e-07  Score=68.10  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--ceEEeeecCCCCeEEEEEeCC---eeeEEEeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--GLVIMAVEELDAGKYDCWLGN---TVLCTHNLT  364 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~  364 (378)
                      +.|.|...+.+   +|.|.|+.++..     |......++.....  .|.|.+++.+|+|.|.|.+.|   ..-++-.|.
T Consensus         1 ~~L~C~v~g~P---~p~v~W~k~~~~-----l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (76)
T cd05736           1 ASLRCHAEGIP---LPRLTWLKNGMD-----ITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF   72 (76)
T ss_pred             CEeEeEeeecC---CCEEEEEECCEE-----CCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence            46899987543   368999988653     32111223333333  499999999999999999997   445555565


Q ss_pred             ec
Q psy10772        365 VD  366 (378)
Q Consensus       365 v~  366 (378)
                      |.
T Consensus        73 V~   74 (76)
T cd05736          73 VE   74 (76)
T ss_pred             EE
Confidence            54

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.38  E-value=1.6e-06  Score=69.44  Aligned_cols=75  Identities=25%  Similarity=0.341  Sum_probs=46.8

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-----------eEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-----------IRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-----------~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+++.|.|...+.|.   |.|+|+......+. .+......+           ......-|.|.+|+..|+|.|.|.+.|
T Consensus         1 G~~v~l~C~v~g~P~---P~i~W~k~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   76 (90)
T cd04974           1 GSDVEFHCKVYSDAQ---PHIQWLKHVEVNGS-KYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN   76 (90)
T ss_pred             CCcEEEEEEEeCCCC---CeEEEEEecccCCc-eeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec
Confidence            688999999876554   78999875321111 011000000           011123489999999999999999998


Q ss_pred             ---eeeEEEeeee
Q psy10772        356 ---TVLCTHNLTV  365 (378)
Q Consensus       356 ---~~l~~~~~~v  365 (378)
                         ...++-.|+|
T Consensus        77 ~~G~~~~sa~L~V   89 (90)
T cd04974          77 SIGPSHHSAWLTV   89 (90)
T ss_pred             ccCcccCCEEEEe
Confidence               4444545554

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.37  E-value=1.5e-06  Score=69.16  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=52.1

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEe-----ecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRT-----VDGGLVIMAVEELDAGKYDCWLGN---TVL  358 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~~~---~~l  358 (378)
                      +.+.|.|...+.+.+. ..++|++++.+     |... .+.++..     ....|.|.+|+..|+|.|.|.+.|   +..
T Consensus         1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~   74 (85)
T cd05854           1 ENLTLQCHASHDPTMD-LTFTWSLDDFP-----IDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS   74 (85)
T ss_pred             CcEEEEEEEecCCCCC-eEEEEEECCeE-----ccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence            3578999987665531 25899998754     3321 1222211     234699999999999999999998   777


Q ss_pred             EEEeeeecc
Q psy10772        359 CTHNLTVDA  367 (378)
Q Consensus       359 ~~~~~~v~~  367 (378)
                      ++-.|.|..
T Consensus        75 ~~~~L~V~~   83 (85)
T cd05854          75 ASATLVVRG   83 (85)
T ss_pred             EEEEEEEEC
Confidence            888888865

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.36  E-value=9e-07  Score=69.93  Aligned_cols=55  Identities=22%  Similarity=0.422  Sum_probs=39.7

Q ss_pred             eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-----------ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-----------VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-----------~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +++|.+++.|.   |.|+|+.++.+     |.  +++++..           ...-|.|.+++.+|+|.|.|.|.|
T Consensus         2 ~i~~~v~G~P~---P~v~W~k~g~~-----i~--~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N   67 (81)
T cd04971           2 CIPFTVRGNPK---PTLTWYHNGAV-----LN--ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASN   67 (81)
T ss_pred             eEEEEeEeeCC---CcEEEEECCEE-----Cc--CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEe
Confidence            57888876655   78999998764     43  2222211           111399999999999999999998

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.36  E-value=5.3e-07  Score=68.87  Aligned_cols=52  Identities=31%  Similarity=0.362  Sum_probs=41.0

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|+|...+.|.   |.++|+.++.+     |.  ..    .....|.|.++..+|+|.|.|.+.|
T Consensus         1 ~~l~c~v~g~P~---P~v~W~kdg~~-----l~--~~----~~~~~L~i~~v~~~D~G~YtC~a~N   52 (67)
T cd05863           1 VKLPVKVAAYPP---PEFQWYKDGKL-----IS--GK----HSQHSLQIKDVTEASAGTYTLVLWN   52 (67)
T ss_pred             CEEEEEEEEeCC---CEEEEEECCEE-----Cc--cc----CCcCEEEECCCCHHHCEEEEEEEEE
Confidence            468999876655   78999998764     53  11    2345799999999999999999987

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.34  E-value=1.1e-06  Score=66.37  Aligned_cols=66  Identities=26%  Similarity=0.440  Sum_probs=45.3

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v  365 (378)
                      +.|+|...+.+.   |.++|+.++.+     +.  .+. ........|.|.+++..|+|.|.|.+.|   ..-++..|.|
T Consensus         1 v~l~C~~~g~P~---p~v~W~k~~~~-----~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPT---PEISWIKIGGE-----LP--ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecC---CeEEEEECCeE-----CC--CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999876544   68999987643     21  111 1112234599999999999999999998   4455555555

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.31  E-value=3.5e-06  Score=69.84  Aligned_cols=86  Identities=26%  Similarity=0.377  Sum_probs=58.1

Q ss_pred             ceeEEEEeCCeeeeeeeec------cCC--CCCCCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVK------LPA--SMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r------~~~--~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y  349 (378)
                      .+...+.+|+.+.|.|..=      ..+  .-+..+|+|+.++.+.. ...... .+.|+...+.-|.|.++..+|+|.|
T Consensus         7 ~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~-~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896           7 LKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGE-EPIEIIFDGVRMSKEEDSIWFRPAELQDSGLY   85 (104)
T ss_pred             eeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCC-CCCcccccceeEEEeCCEEEEEeCChhhCeEE
Confidence            4678899999999999860      000  11122689999863311 011111 1247888888899999999999999


Q ss_pred             EEEeCCeeeE---EEeeee
Q psy10772        350 DCWLGNTVLC---THNLTV  365 (378)
Q Consensus       350 ~C~~~~~~l~---~~~~~v  365 (378)
                      .|...|.+.|   +.+|+|
T Consensus        86 ~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEECCCCcceEEEEEEEC
Confidence            9999998844   444443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.29  E-value=2.1e-06  Score=67.35  Aligned_cols=62  Identities=26%  Similarity=0.409  Sum_probs=47.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .....+.+|+++.|.|...+.+.  .+.+.|++|+..     |.        ....-|.|.++ .+|+|.|.|.+.+.
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~-----l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKL-----LE--------TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEE-----ee--------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            34567889999999999876433  236899998753     42        12456899999 99999999999863

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.28  E-value=4.3e-06  Score=64.79  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=51.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-----ecCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-----VDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      |.+.+..|+++.|.|.....+.   +.|.|+.++.+     +.  .+..+..     ...-|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~~~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~-----~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~   71 (85)
T cd05729           2 RLHAVPAGSTVRLKCPASGNPR---PTITWLKDGKP-----FK--KEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE   71 (85)
T ss_pred             ceeEecCCCcEEEEEEcCCCCC---CeEEEEECCEE-----Cc--ccCceeEEEccCcEEEEEEeECCcccCEEEEEEEE
Confidence            4566778999999999875533   57999987643     21  1111111     12248899999999999999998


Q ss_pred             C---eeeEEEeee
Q psy10772        355 N---TVLCTHNLT  364 (378)
Q Consensus       355 ~---~~l~~~~~~  364 (378)
                      |   ..-.++.|.
T Consensus        72 n~~g~~~~~~~l~   84 (85)
T cd05729          72 NKYGSINHTYKVD   84 (85)
T ss_pred             ECCceEEEEEEEe
Confidence            6   445555554

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>KOG3513|consensus

Probab=98.27  E-value=5.6e-06  Score=91.31  Aligned_cols=117  Identities=26%  Similarity=0.362  Sum_probs=83.4

Q ss_pred             EEEEEEeeeecCCCeEEEE---EEECCCeeEE---EEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCC
Q psy10772        227 VVDVVQYEVFGTTSEYIVY---FAATTTLRTV---FVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPA  300 (378)
Q Consensus       227 aVd~v~~~~~~~~~~ytV~---flGT~~G~v~---~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~  300 (378)
                      .+-.++-.|   ++.|.+.   ..|++.+.++   +..+.|+|.+              +...+..|+++.|+|...+  
T Consensus       297 ~I~nv~~~D---~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~--------------~d~~~~~gs~v~~eC~a~g--  357 (1051)
T KOG3513|consen  297 KIPNVQYED---AGEYECIAENSRGSATHSGHVTVYAPPYWLQKP--------------QDTEADTGSNVTLECKASG--  357 (1051)
T ss_pred             EecccCcCC---CeEEEEEEecccccceeeEEEEEecCchhhccc--------------ceeEecCCCCeEEEEEecC--
Confidence            344444444   6889887   3454444433   2245666643              4566778999999999754  


Q ss_pred             CCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeeeccc
Q psy10772        301 SMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       301 ~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                       -|.|+|+|+.|+.+     |.. ..++++.+..+-|.|.+|+.+|+|.|+|.|.|   ..+++=.|.|.+.
T Consensus       358 -~P~p~v~WlkNg~p-----l~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  358 -KPNPTVKWLKNGEP-----LEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             -CCCCceEEeeCCee-----cCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc
Confidence             44589999999976     431 23344667777799999999999999999999   7778888888775

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.24  E-value=1.9e-06  Score=69.72  Aligned_cols=60  Identities=27%  Similarity=0.453  Sum_probs=45.0

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeec-CCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE-ELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~-~~DsG~Y~C~~~~  355 (378)
                      |+.+.|.|...+.+.   |.++|+.++.+     +.. .+.++...+..|+|.++. ..|+|.|.|.+.|
T Consensus        19 ~~~v~l~C~a~G~P~---P~i~W~k~~~~-----i~~-~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849          19 EGKVSVNCRARANPF---PIYKWRKNNLD-----IDL-TNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CCeEEEeCcCccCCC---CEEEEEECCEE-----ccC-CCCeEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence            458999999876544   78999987653     321 233555566678898885 6899999999998

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.21  E-value=2e-06  Score=63.56  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=39.2

Q ss_pred             CCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCc----eEEeeecCCCCeEEEEEe
Q psy10772        287 GQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       287 G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      |+++.|.|.. ..++.   +.+.|++++.....       .......  ...    |.|.+++..|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~---~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPP---TTVTWSKNGQSLPE-------GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSST---SEEEEEETTTTTSE-------EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCC---cEEEEEECCccccC-------cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 32322   48999998765211       1111111  112    999999999999999985

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.20  E-value=3.8e-06  Score=60.11  Aligned_cols=60  Identities=27%  Similarity=0.421  Sum_probs=42.4

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +|+++.|.|.....   +.+.+.|++++..     +.  ..........-|.|.+++..|+|.|.|.+.+
T Consensus         1 ~g~~~~l~C~~~~~---~~~~v~W~~~~~~-----~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   60 (63)
T smart00408        1 EGQSVTLTCPAEGD---PVPNITWLKDGKP-----LP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAEN   60 (63)
T ss_pred             CCceEEEEeeCccC---CCCeEEEEECCEE-----CC--CCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence            48899999985322   3357999987643     22  1112233455699999999999999999875

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.18  E-value=3.6e-06  Score=65.46  Aligned_cols=63  Identities=25%  Similarity=0.340  Sum_probs=40.5

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeE-eeccCcceEeec-CceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRSDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.|.   |.|+|+.+......... ....+.++.... .-|+|.+++.+|+|.|.|.+.|
T Consensus         1 v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   65 (79)
T cd05734           1 VTLNCSAEGYPP---PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSN   65 (79)
T ss_pred             CEeEeeCeEeCC---CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEe
Confidence            468998765544   68999986432110000 001233444333 4499999999999999999987

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.15  E-value=6.9e-06  Score=64.60  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=47.7

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce----EeecCceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI----RTVDGGLVIMAVEELDAGKYDCWLGN---TVLC  359 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~----~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~  359 (378)
                      |+++.|.|...+.++. .|.++|.+++...... ... ...+.    .....-|.|.+++.+|+|.|.|.+.|   +..+
T Consensus         1 Ge~~~L~C~~~g~~~~-~~~i~W~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742           1 GETLVLNCTVLTELNE-GVDFQWTYPGKKRGRG-KSM-VTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             CCeEEEEEEEEeCCCc-cEEEEEecCCcccCCc-eEe-ecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            7889999999876432 2579999876542210 110 00010    11223599999999999999999997   3444


Q ss_pred             EEeee
Q psy10772        360 THNLT  364 (378)
Q Consensus       360 ~~~~~  364 (378)
                      +=+|.
T Consensus        78 s~~v~   82 (84)
T cd05742          78 STKVN   82 (84)
T ss_pred             EEEEE
Confidence            44443

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG4221|consensus

Probab=98.14  E-value=5.7e-06  Score=91.46  Aligned_cols=91  Identities=27%  Similarity=0.421  Sum_probs=71.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC-
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      ......+.+|+++.|+|.++   ++++|.|+|+.|+..     |.+.+ .++.+. ...|+|.+++..|+|.|.|.+.| 
T Consensus       243 ~p~~~~v~~g~~v~leCvvs---~~p~p~v~Wlrng~~-----i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~  313 (1381)
T KOG4221|consen  243 EPSNAVVVEGDDVVLECVVS---GVPKPSVKWLRNGEK-----ISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNT  313 (1381)
T ss_pred             CCCccccccCCcEEEEEEec---CCCCCceEEeeCCee-----eeecc-eEEEEecccceEEeccccccCceEEEEecCC
Confidence            35567889999999999986   456689999998754     54323 455444 45599999999999999999998 


Q ss_pred             --eeeEEEeeeecccccCCCCCCC
Q psy10772        356 --TVLCTHNLTVDAHSNVADAPTR  377 (378)
Q Consensus       356 --~~l~~~~~~v~~~~c~~~~~~~  377 (378)
                        ..=++=+|+|.+.+-..+.|+-
T Consensus       314 ~D~idasaev~V~a~P~~~~~p~~  337 (1381)
T KOG4221|consen  314 NDSIDASAEVTVLAPPGFTKAPTT  337 (1381)
T ss_pred             CcccccceEEEEEcCCCCCCCCcc
Confidence              4557778999998888777764

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.12  E-value=3.6e-06  Score=66.40  Aligned_cols=55  Identities=22%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             eeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe---------ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        291 HLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT---------VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       291 ~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~---------~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .++|.+++.|.   |+|+|++++.+     |.  .++++..         ...-|.|.+++..|+|.|.|.|.|
T Consensus         2 ~i~~~v~G~P~---Pti~W~kng~~-----l~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N   65 (79)
T cd05855           2 CIPFTVKGNPK---PTLQWFHEGAI-----LN--ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN   65 (79)
T ss_pred             eEEEEEeEeCC---CceEEEECCEE-----CC--CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEc
Confidence            36788776655   79999999865     43  3333211         112389999999999999999998

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.10  E-value=1.2e-05  Score=65.41  Aligned_cols=72  Identities=25%  Similarity=0.394  Sum_probs=47.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc----CceeeEeeccCcceEee-----cCceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD----KGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~----~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+.+|+++.|+|.....+   .+.|.|+..+..    .+...+   .++|+...     +.-|.|.+++.+|+|.|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~---~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y   77 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKAL---RDNRIELVRASWHELSISISDVSLSDEGQY   77 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccc---cCCCEEEEECCCCcEEEEECcCCcccCEEE
Confidence            4678899999999999886443   368999732110    000001   23343321     12489999999999999


Q ss_pred             EEEeCCe
Q psy10772        350 DCWLGNT  356 (378)
Q Consensus       350 ~C~~~~~  356 (378)
                      .|.+...
T Consensus        78 ~C~~~t~   84 (95)
T cd07701          78 TCSLFTM   84 (95)
T ss_pred             EEEeEee
Confidence            9999863

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.10  E-value=9.1e-06  Score=76.61  Aligned_cols=67  Identities=21%  Similarity=0.383  Sum_probs=48.5

Q ss_pred             EEEEeCCeeeeeeeecc-CC-CCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKL-PA-SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~-~~-~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|.... ++ ..+.|+++|+.++.+     |.  .++++.....|  |+|.+|+.+|+|.|.|.+.-
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~-----l~--~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI-----VL--YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE-----CC--CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEE
Confidence            45677999999998642 11 224468999998864     43  34454443333  99999999999999999974

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.08  E-value=6.6e-06  Score=64.76  Aligned_cols=66  Identities=26%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|......  +.+.+.|+.++.+     +.   . +......-|.|.+++.+|+|.|.|.+.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~--~~~~i~W~~~~~~-----~~---~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   73 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKS--PAYTLVWTRVGGG-----LP---S-RAMDFNGILTIRNVQLSDAGTYVCTGSN   73 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCC--CCcEEEEEECCCc-----CC---C-cccccCCEEEECCCCHHHCEEEEEEEec
Confidence            4567788999999999975422  3357999987643     21   1 1222345599999999999999999987

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.08  E-value=9e-06  Score=63.12  Aligned_cols=58  Identities=24%  Similarity=0.428  Sum_probs=38.4

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ec-CceEEeeecC----CCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VD-GGLVIMAVEE----LDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~-~GLlI~~v~~----~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.|.   |.++|+.++.+     |....+.++.. .. .-|+|..+..    +|+|.|.|.+.|
T Consensus         1 i~l~C~~~G~P~---P~v~W~k~g~~-----l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05733           1 IVIKCEAKGNPP---PTFSWTRNGTH-----FDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN   64 (77)
T ss_pred             CEEEeeCcccCC---CeEEEEECCeE-----CCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence            368999876544   78999987654     32212334333 22 3477777643    789999999998

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.08  E-value=6.3e-06  Score=65.17  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+.+.+|+++.|.|..++.+.   | .|+|++++.+     |.  .  +......-|.|.++  .|+|.|.|.|.|.
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~---P~~I~W~k~g~~-----l~--~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~   69 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPE---PVEILWWQGGSP-----LG--D--PPAPSPSVLNVPGL--NETSKFSCEAHNA   69 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecC---CeEEEEEECCEE-----CC--C--CCCCCCCEEEEccc--cCCeEEEEEEEec
Confidence            35678899999999999876655   6 6999998764     42  1  11223445777765  5899999999983

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.08  E-value=1.9e-05  Score=64.48  Aligned_cols=80  Identities=21%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-----eeccCcceEeec-Cc----eEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-----KFRSDKFIRTVD-GG----LVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-----~~~~~~~~~~~~-~G----LlI~~v~~~DsG~  348 (378)
                      -+.+++.+|+++.|+|.......   ..+.|+..+..    -+     ....++|+..+. .|    |.|.+|+.+|+|.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~---~~v~w~~~~~~----~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~   76 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDD---SVIQLLNPNRQ----TIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGR   76 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCc---cEEEEEecCCc----EEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEE
Confidence            35688999999999999975532   35778743321    11     001344544332 23    8999999999999


Q ss_pred             EEEEeCCeeeEEEeeee
Q psy10772        349 YDCWLGNTVLCTHNLTV  365 (378)
Q Consensus       349 Y~C~~~~~~l~~~~~~v  365 (378)
                      |.|+..-.+..++..+|
T Consensus        77 Y~Cqv~t~p~~~~~~~~   93 (95)
T cd05881          77 YFCQLYTDPPQEAYTTI   93 (95)
T ss_pred             EEEEEEcccCeEEEEEE
Confidence            99999988888888776

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.07  E-value=1.4e-05  Score=62.33  Aligned_cols=58  Identities=22%  Similarity=0.390  Sum_probs=37.7

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCc-eEEeeecC----CCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGG-LVIMAVEE----LDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~G-LlI~~v~~----~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.|.   |.|+|+.++.+     |....+.++.. ..+| |+|..++.    .|+|.|.|.+.|
T Consensus         1 ~~l~C~a~G~P~---P~i~W~k~g~~-----l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05874           1 IVIQCEAKGKPP---PSFSWTRNGTH-----FDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARN   64 (77)
T ss_pred             CEEEeeCcccCC---CeEEEEECCeE-----CCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEc
Confidence            468999876654   78999988654     32222333332 2345 44555553    478999999998

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>smart00410 IG_like Immunoglobulin like

Probab=98.07  E-value=3.8e-05  Score=57.89  Aligned_cols=65  Identities=31%  Similarity=0.427  Sum_probs=47.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe-cccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHY-SKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~-~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+..|+++.|.|.....   +.+.+.|+.+ +..     +.  .++++....    .-|.|.++...|+|.|.|...+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-----v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKL-----LA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEE-----cC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            4667889999999998755   2358999987 322     21  223333333    3499999999999999999985

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.07  E-value=3.8e-05  Score=57.89  Aligned_cols=65  Identities=31%  Similarity=0.427  Sum_probs=47.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe-cccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHY-SKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~-~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+..|+++.|.|.....   +.+.+.|+.+ +..     +.  .++++....    .-|.|.++...|+|.|.|...+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-----v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKL-----LA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEE-----cC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            4667889999999998755   2358999987 322     21  223333333    3499999999999999999985

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.05  E-value=1.4e-05  Score=63.28  Aligned_cols=73  Identities=25%  Similarity=0.425  Sum_probs=48.4

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE----eecCceEEeeecCCCCeEEEEEeCC-----ee
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR----TVDGGLVIMAVEELDAGKYDCWLGN-----TV  357 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~----~~~~GLlI~~v~~~DsG~Y~C~~~~-----~~  357 (378)
                      |+++.|.|.....+.   +.+.|.+.++..++ .+.  ...+..    ....-|.|.+++.+|+|.|.|.+.+     ..
T Consensus         1 Ge~~~l~C~~~~~~~---~~~~W~~~~~~~~~-~~~--~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   74 (84)
T cd05861           1 GETITVNCIVQGNEV---VDFSWTYPGKDIGK-GIP--EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA   74 (84)
T ss_pred             CCcEEEEEEEECCCc---cEEEEEECCccCCC-Cce--EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce
Confidence            788999999875433   68999987653221 010  000111    1123599999999999999999986     23


Q ss_pred             eEEEeeee
Q psy10772        358 LCTHNLTV  365 (378)
Q Consensus       358 l~~~~~~v  365 (378)
                      -.+.+|+|
T Consensus        75 ~~sv~i~V   82 (84)
T cd05861          75 FKKVNITV   82 (84)
T ss_pred             eEEEEEEE
Confidence            46667766

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.05  E-value=1.9e-05  Score=61.55  Aligned_cols=58  Identities=22%  Similarity=0.348  Sum_probs=38.8

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCc-eEEeeecC----CCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGG-LVIMAVEE----LDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~G-LlI~~v~~----~DsG~Y~C~~~~  355 (378)
                      +.|.|.+.+.|.   |.|+|+.++.+     +....+.++.. ..+| |+|..++.    .|+|.|.|.+.|
T Consensus         1 ~~l~C~~~G~P~---P~v~W~k~g~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N   64 (77)
T cd05875           1 IIIECEAKGNPV---PTFQWTRNGKF-----FNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARN   64 (77)
T ss_pred             CEEEEeccccCC---CEEEEEECCEE-----ccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence            358999876655   79999998753     32223444433 2344 66666642    469999999998

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>KOG3513|consensus

Probab=98.03  E-value=4.9e-05  Score=84.08  Aligned_cols=83  Identities=29%  Similarity=0.394  Sum_probs=61.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC-
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      .++.+.++.|..+.|.|.+.   +-++|.+.|+--+. .    +.  .++|+.+.++| |.|.+++++|+|.|.|++.| 
T Consensus       432 ~~~~~~a~~g~~v~i~C~~~---asP~p~~~W~k~~~-~----~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~  501 (1051)
T KOG3513|consen  432 VERKVMAVVGGTVTIDCKPF---ASPKPKVSWLKGGE-K----LL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENK  501 (1051)
T ss_pred             cceEEEEEeCCeEEEeeccC---CCCcceEEEEcCCc-c----cc--cCceEEECCCCcEEecccCcccCcEEEEEEEcc
Confidence            46778899999999999975   44557899975433 1    22  56677776666 99999999999999999998 


Q ss_pred             --eeeEEEeeeeccccc
Q psy10772        356 --TVLCTHNLTVDAHSN  370 (378)
Q Consensus       356 --~~l~~~~~~v~~~~c  370 (378)
                        ..-.-=+|.|.++..
T Consensus       502 ~G~a~~~~~L~Vkd~tr  518 (1051)
T KOG3513|consen  502 LGKAESTGNLIVKDATR  518 (1051)
T ss_pred             cCccceEEEEEEecCce
Confidence              344444566666544

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.97  E-value=3.6e-05  Score=61.87  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=46.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-eEeeccCcceEee-----cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-QIKFRSDKFIRTV-----DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|.....+   .+.+.|+..+...-.+ ......++|+...     ..-|.|.+|+.+|+|.|.|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence            4678899999999999885432   3579997421110000 0000012333321     12399999999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +..
T Consensus        81 ~~~   83 (95)
T cd05717          81 LYT   83 (95)
T ss_pred             Eec
Confidence            876

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.96  E-value=8.6e-06  Score=62.05  Aligned_cols=57  Identities=21%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             eeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcce--Ee---ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        291 HLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RT---VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       291 ~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~---~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|.|...+ .+.   |.++|+.++.+     |........  +.   ...-|.|.+++.+|+|.|.|.+.|
T Consensus         2 ~l~C~~~g~~P~---p~~~W~k~g~~-----l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   64 (75)
T cd05750           2 VLKCEATSEYPS---LRFKWFKDGKE-----LNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN   64 (75)
T ss_pred             EEEEEccCCCCC---ceEEEEcCCee-----ccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEE
Confidence            58999876 433   58999998754     321111111  11   123499999999999999999986

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.94  E-value=1.5e-05  Score=65.03  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc-----CceeeEee----ccCcceEe----ecCc---eEEeeecCCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----KGRYQIKF----RSDKFIRT----VDGG---LVIMAVEELD  345 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~-----~~~~~l~~----~~~~~~~~----~~~G---LlI~~v~~~D  345 (378)
                      +.+..|+++.|+|.....+.   +.+.|++++..     +++  +..    +..+|+-.    .+.|   |.|.+++.+|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~---~~i~W~~~~~k~~~g~~~~--l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sD   76 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKS---IQFHWKNSNQIKILGNQGS--FLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIED   76 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCC---cEEEEEECCcEEccCcCCE--EEEecccccCCCCceecccCCCCeEEEEECCCCHHH
Confidence            56778999999998754332   57999854311     111  100    01112111    1233   9999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|...+
T Consensus        77 sgtY~C~v~~   86 (94)
T cd07690          77 SDTYICEVED   86 (94)
T ss_pred             CEEEEEEECC
Confidence            9999999987

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.94  E-value=1.5e-05  Score=61.36  Aligned_cols=59  Identities=22%  Similarity=0.438  Sum_probs=38.8

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeec--cCcceEe----ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR--SDKFIRT----VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~--~~~~~~~----~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|...+.  .+.+.++|++|+.+     |...  ...++..    ....|.|.+++.+|+|.|.|.+.|
T Consensus         1 ~~L~C~a~~~--~p~~~~~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N   65 (76)
T cd05895           1 LVLRCETVSE--YPSLRFKWFKNGKE-----IGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSS   65 (76)
T ss_pred             CEEEEecccC--CCCCceEEEECCcc-----cccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEe
Confidence            3689986421  22357899998765     3211  1122221    123499999999999999999987

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.92  E-value=3.5e-05  Score=64.15  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-e-e------cCceEEeeec-CCCCeEEEEEeCC-
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-T-V------DGGLVIMAVE-ELDAGKYDCWLGN-  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~-~------~~GLlI~~v~-~~DsG~Y~C~~~~-  355 (378)
                      .|..+.|.|...+.+.   |.++|+.++..     |.. .+.++. . .      ..-|.|.++. ..|+|.|.|.+.| 
T Consensus        22 ~g~~v~L~C~a~G~P~---p~i~W~k~g~~-----l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~   92 (109)
T cd05773          22 GSSDANLVCQAQGVPR---VQFRWAKNGVP-----LDL-GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS   92 (109)
T ss_pred             CCCEEEEEEECcccCC---CEEEEEECCEE-----CCC-CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence            4689999999875443   68999988753     321 111221 1 1      1237888987 5999999999998 


Q ss_pred             --eeeEEEeeeec
Q psy10772        356 --TVLCTHNLTVD  366 (378)
Q Consensus       356 --~~l~~~~~~v~  366 (378)
                        ..-.+..|.|.
T Consensus        93 ~G~~~~~i~L~~~  105 (109)
T cd05773          93 LGEDSLDIQLVST  105 (109)
T ss_pred             CccCcEEEEEEec
Confidence              44666666554

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.85  E-value=8.8e-05  Score=58.77  Aligned_cols=66  Identities=23%  Similarity=0.315  Sum_probs=43.6

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------e---ccCcceEeecCc-eEEeeecCCCCeEEEEEeC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------F---RSDKFIRTVDGG-LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~---~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~  354 (378)
                      |++|.|+|... +..  ...|.|+++........+.        .   +-..|+....+| |.|.+++.+|+|.|.|...
T Consensus         1 G~~VtL~c~~~-~~~--~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNL-PEN--LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccC-CCC--CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence            78999999764 222  2379999986442221111        0   112344444445 9999999999999999988


Q ss_pred             C
Q psy10772        355 N  355 (378)
Q Consensus       355 ~  355 (378)
                      .
T Consensus        78 ~   78 (92)
T cd05741          78 S   78 (92)
T ss_pred             c
Confidence            6

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.83  E-value=8.2e-05  Score=56.50  Aligned_cols=58  Identities=34%  Similarity=0.600  Sum_probs=44.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|...+.+.   +.+.|+.++..     +.        .+.++|.|..++..|+|.|.|.+.+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~---~~~~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~g~y~C~~~~   66 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPP---PQVQWYKNGSP-----IN--------SSQNGLFIPNVSPEDSGNYTCRASN   66 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSS---SEEEEEETTEE-----EE--------EESSEEEESSEEGGGTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccc---eeeeeeeeeee-----ee--------eeeeeeeeeeeccccCEEEEEEEEe
Confidence            45788999999999875434   47999876532     42        2234488899999999999999986

...

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.83  E-value=8e-05  Score=61.02  Aligned_cols=74  Identities=20%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|+|.....   +...+.|+.+.......-|..       ...+|+...      .--|.|.+++.+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTS---TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCC---CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            456789999999999998644   234799988753222111110       022344322      1249999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|.+.+
T Consensus        82 sG~Y~C~~~~   91 (109)
T cd04983          82 SAVYFCALSE   91 (109)
T ss_pred             CEEEEEEEec
Confidence            9999999875

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.81  E-value=0.00011  Score=61.01  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=49.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeecCc-eEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVDGG-LVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~~G-LlI~~v~~~Ds  346 (378)
                      ....+.+|+++.|.|.- .|.++.  .++|+.......+.+| ..++           ++|.....+| |+|++|+..|+
T Consensus         6 ~p~~~~~G~~V~L~v~~-~p~~~~--~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           6 VPPQVAEGENVLLLVHN-LPENLL--AYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             cCCcccCCCCEEEEecC-CCCCce--EEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            34567889999999965 455543  6899885322212222 1111           3455555555 99999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|...+
T Consensus        83 G~Y~~~v~~   91 (105)
T cd05774          83 GFYTLQTIT   91 (105)
T ss_pred             EEEEEEEEe
Confidence            999998876

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.79  E-value=0.00016  Score=60.77  Aligned_cols=77  Identities=22%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC-CCCeEEEEecccCceeeEe--ec------cC----cceEee------cCceEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA-NQPMSWYHYSKDKGRYQIK--FR------SD----KFIRTV------DGGLVIM  339 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La-~~~v~W~~~~~~~~~~~l~--~~------~~----~~~~~~------~~GLlI~  339 (378)
                      .+.+.+.+|+++.|+|.-.+..+++ ...|.|+++....+..++.  ..      ..    .|+...      +-.|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4678899999999999875433332 1258998763221111111  00      11    122111      2349999


Q ss_pred             eecCCCCeEEEEEeCC
Q psy10772        340 AVEELDAGKYDCWLGN  355 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~  355 (378)
                      +|+.+|+|.|.|...+
T Consensus        85 ~v~~~D~G~Y~C~v~~  100 (115)
T cd05880          85 QLQPTDNGTYTCQVKN  100 (115)
T ss_pred             eCChhhCEEEEEEEEe
Confidence            9999999999998885

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.74  E-value=8.9e-05  Score=60.91  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc-----CceeeEeeccCcceEeecCceEEeeecCCC-CeEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD-----KGRYQIKFRSDKFIRTVDGGLVIMAVEELD-AGKYDC  351 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~-----~~~~~l~~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C  351 (378)
                      .++.+.+.+|+.+.|.|...+-+.  +..|.|..++..     .+||.+.-+....  -...-|.|.++...| .|.|.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~--g~~S~L~I~~~~~~d~~g~Y~C   82 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESGTSERYTVERTSTGS--GVLSTLTINNIMEADFQTHYNC   82 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCCCCCCEEEEEEccCC--CcEEEEEECCCccccCCcEEEE
Confidence            467889999999999999843322  125789887543     2233332110000  011129999998878 899999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      .+.|
T Consensus        83 ~a~N   86 (98)
T cd05898          83 TAWN   86 (98)
T ss_pred             EEEe
Confidence            9987

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.74  E-value=7.1e-05  Score=60.65  Aligned_cols=74  Identities=22%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee------cCceEEeeecCCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      +++.+|+++.|+|.....  .+...+.|+.......+..+..          ...+|+...      .--|.|.+++.+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           1 LSVSEGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED   78 (105)
T ss_pred             CeecCCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence            357789999999998754  1224789988754322222211          112343322      1248999999999


Q ss_pred             CeEEEEEeCCee
Q psy10772        346 AGKYDCWLGNTV  357 (378)
Q Consensus       346 sG~Y~C~~~~~~  357 (378)
                      +|.|.|.+.+..
T Consensus        79 ~G~Y~C~v~~~~   90 (105)
T cd00099          79 SAVYYCAVSLSG   90 (105)
T ss_pred             CEEEEEEEecCC
Confidence            999999998643

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.74  E-value=0.00041  Score=68.74  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEeceeeeeccCC-CCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNT-SDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~~lqd~~~~-~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..++..|   .+.|++...-...|....+...+.-.+... -|....   ..+.+.+..|+++.|.|...+.+...
T Consensus       178 ~L~i~~v~~~d---~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~---~p~~~~~~~G~~v~L~C~a~g~P~~~  251 (326)
T PHA02785        178 IITIEDVRKND---AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ---LPEGVVTSIGSNLTIACRVSLRPPTT  251 (326)
T ss_pred             eEEEeecChhh---CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec---CCCcEEecCCCcEEEEEEEECCCCCC
Confidence            46666666665   688999854433444332321111112111 112221   23456677899999999997543322


Q ss_pred             CCCeEEEEeccc--------CceeeEeeccCcc----eEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        304 NQPMSWYHYSKD--------KGRYQIKFRSDKF----IRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       304 ~~~v~W~~~~~~--------~~~~~l~~~~~~~----~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.|+.|+..        .++.++.  ....    -.....-|.|.+|+.+|+|.|.|.+.+
T Consensus       252 ~~~v~W~kng~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n  313 (326)
T PHA02785        252 DADVFWISNGMYYEEDDEDGDGRISVA--NKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFT  313 (326)
T ss_pred             CceEEEEECCEECCCcCCCCceeEEEe--cCccccccceeeeEEEEECCcchhcCeeeEEEEEe
Confidence            347999998753        1111111  1000    001123499999999999999999987

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.70  E-value=0.00017  Score=59.54  Aligned_cols=73  Identities=23%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------c---cCcceEeec-----CceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------R---SDKFIRTVD-----GGLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~---~~~~~~~~~-----~GLlI~~v~  342 (378)
                      .+.+.+.+|+++.|.|.... +   .+.|.|+.+...++..-|-.        .   ..+|+....     --|.|.+++
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            34678899999999999865 2   24799988854322211110        0   123444322     239999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus        81 ~~Dsg~Y~Ca~~~   93 (110)
T cd05899          81 PEDSAVYLCASSL   93 (110)
T ss_pred             hhhCEEEEEEeeC
Confidence            9999999999864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.63  E-value=0.00014  Score=60.85  Aligned_cols=77  Identities=21%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCce-eeEe-ec-------cC----cceEeec------CceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGR-YQIK-FR-------SD----KFIRTVD------GGLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~-~~l~-~~-------~~----~~~~~~~------~GLlI  338 (378)
                      .+.+.+.+|+++.|+|........ ....|.|+++....+. ..+- ..       ..    .|+....      -.|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            456788999999999987543321 1135899886532221 1111 00       01    1222221      23999


Q ss_pred             eeecCCCCeEEEEEeCC
Q psy10772        339 MAVEELDAGKYDCWLGN  355 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~  355 (378)
                      .+|+.+|+|.|.|...+
T Consensus        85 ~~v~~~D~G~Y~C~v~~  101 (116)
T cd05715          85 HNLQFTDNGTYTCDVKN  101 (116)
T ss_pred             eeCCcccCEEEEEEEEe
Confidence            99999999999999886

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.63  E-value=0.00019  Score=57.09  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=42.1

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC-cceE----eecCceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-KFIR----TVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~-~~~~----~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+++.|.|.....+.+. ..+.|.+.++...+  +..... ++..    ....-|.|.+++.+|+|.|.|.+.|
T Consensus         1 Ge~~~L~C~~~~~~~~~-~~~~W~~p~~~~~~--~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n   71 (86)
T cd05862           1 GEKLVLNCTARTELNVG-IDFQWDYPGKKEQR--AKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASS   71 (86)
T ss_pred             CCcEEEEEEEEeCCCCc-EEEEEEcCCccccc--ceecccccccccccceeeeEEEEecCCcccCEEEEEEEee
Confidence            78899999996554432 25799887653211  110011 1111    1123499999999999999999987

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.60  E-value=0.00042  Score=56.79  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             eCCeeeeeeeeccCC---CCCCCCeEEEEeccc-CceeeEee----------ccCcceEe-----ecCceEEeeecCCCC
Q psy10772        286 WGQSVHLSCFVKLPA---SMANQPMSWYHYSKD-KGRYQIKF----------RSDKFIRT-----VDGGLVIMAVEELDA  346 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~---~La~~~v~W~~~~~~-~~~~~l~~----------~~~~~~~~-----~~~GLlI~~v~~~Ds  346 (378)
                      .|+++.|+|.-...+   ......|.|+.+..+ .+...+..          +...|+..     .+-.|.|.+|+.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999876543   233458999987311 11111110          01112222     234499999999999


Q ss_pred             eEEEEEeCCe---eeEEEeeeecc
Q psy10772        347 GKYDCWLGNT---VLCTHNLTVDA  367 (378)
Q Consensus       347 G~Y~C~~~~~---~l~~~~~~v~~  367 (378)
                      |.|.|...+.   .-....|+|-+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            9999999863   34555555543

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.59  E-value=0.00042  Score=56.71  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             eCCeeeeeeeeccCCC---CCCCCeEEEEecccCceeeEee-----------ccCcceEeec-----CceEEeeecCCCC
Q psy10772        286 WGQSVHLSCFVKLPAS---MANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD-----GGLVIMAVEELDA  346 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~---La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~-----~GLlI~~v~~~Ds  346 (378)
                      .|+++.|+|.....+.   .....|.|+.+....+...+..           +-.+|+....     -.|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            4899999998654421   2223699998753211110100           0123444321     2499999999999


Q ss_pred             eEEEEEeCC---eeeEEEeeeecc
Q psy10772        347 GKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       347 G~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      |.|.|...+   ..-..-.|.|+.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999875   344444555543

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.58  E-value=0.00029  Score=56.99  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=46.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEee-cCc---eEEeeecCCCCeEEEE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTV-DGG---LVIMAVEELDAGKYDC  351 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~-~~G---LlI~~v~~~DsG~Y~C  351 (378)
                      ++.+|+++.|.|..+... .....+.|+.+....+...|-. .      .++|+... +.+   |.|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~-~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGN-ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCC-cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            567899999999986541 1223699988865433221211 0      12244332 223   9999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      ...+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.56  E-value=0.00016  Score=58.75  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEeccc----Cc---eeeEeecc---CcceEeec--CceEEeeecCCCCeEEEEE
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKD----KG---RYQIKFRS---DKFIRTVD--GGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~----~~---~~~l~~~~---~~~~~~~~--~GLlI~~v~~~DsG~Y~C~  352 (378)
                      +.|++|.|+|....+..  ...|.|+++...    ..   ........   .+|+....  -.|.|.+++.+|+|.|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~--~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775           2 ILGGSVTLPLNIPDGTE--IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             ccCCeEEEeCCCCCCcE--EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence            57999999997632122  236899986321    00   00111101   12443322  2399999999999999998


Q ss_pred             eCC----eeeEEEeeee
Q psy10772        353 LGN----TVLCTHNLTV  365 (378)
Q Consensus       353 ~~~----~~l~~~~~~v  365 (378)
                      ...    ...+.+.|.|
T Consensus        80 v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          80 INTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEcCCCCeEEEEEEEEe
Confidence            875    3355555544

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.55  E-value=0.00061  Score=57.63  Aligned_cols=76  Identities=25%  Similarity=0.316  Sum_probs=48.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEeccc-----------CceeeEe--eccCcceEe------ecCceEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKD-----------KGRYQIK--FRSDKFIRT------VDGGLVIM  339 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~-----------~~~~~l~--~~~~~~~~~------~~~GLlI~  339 (378)
                      ..+.+..|+++.|+|.-.+.... +...|+|.+....           .+.....  .+-.+|+..      .+-.|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            35678899999999998654322 3458999765321           1110000  001124321      23349999


Q ss_pred             eecCCCCeEEEEEeCC
Q psy10772        340 AVEELDAGKYDCWLGN  355 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~  355 (378)
                      +|+.+|+|.|.|...|
T Consensus        86 nv~~sD~G~Y~C~v~n  101 (116)
T cd05879          86 NLDYTDNGTFTCDVKN  101 (116)
T ss_pred             cCCcccCEEEEEEEEc
Confidence            9999999999999987

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.55  E-value=9.6e-05  Score=58.42  Aligned_cols=60  Identities=22%  Similarity=0.221  Sum_probs=43.3

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|..+..  .+.+++.|+.++..     +.  ..    ....-|.|.+++.+|+|.|.|.+.+
T Consensus        10 ~V~~G~~vtL~C~~~~~--~~~~~~~w~k~g~~-----~~--~~----~~~~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753          10 VVFEGEPLVLRCHGWKN--KPVYKVTYYRDGKA-----KK--YS----HSNSNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             eecCCCCEEEEeeCCCC--CcceEEEEEECCeE-----cc--cc----CCCceEEECccCHHHCEEEEEEEEe
Confidence            57789999999997432  22246899987643     32  11    1123489999999999999999986

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.50  E-value=0.00051  Score=57.16  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v  341 (378)
                      +.+.+.+|+++.|.|..+.. ..+.+.+.|+.+....+...|- .           ....|+....+      -|.|.++
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           6 LSITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            45678889999999998642 1233579999875432221111 0           01234443211      2899999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.48  E-value=0.00027  Score=57.75  Aligned_cols=68  Identities=22%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             EEEEeCCeeeeeeee-ccC-CCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFV-KLP-ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~-r~~-~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+..|.+..|.|.- ..- ++-..|.|+|+.++.+     |.. .++++..  ...-|+|.+|..+|+|.|.|.+.+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~-----l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~   76 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVL-----LDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQF   76 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEE-----CcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEE
Confidence            456778899999952 100 0112358999988754     321 2223222  223499999999999999999986

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.46  E-value=0.00054  Score=55.37  Aligned_cols=76  Identities=26%  Similarity=0.359  Sum_probs=50.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------------eccCcce-EeecCc-----eEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------------FRSDKFI-RTVDGG-----LVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------------~~~~~~~-~~~~~G-----LlI~~  340 (378)
                      ...+.+.+|+++.|+|....  ......+.|+.+........+-            ....+++ +....+     |.|.+
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~--~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSS--SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEES--SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             CCeEEEecCCCEEEEEEEeC--CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            45678899999999999972  2222378999875522211111            0112233 334445     99999


Q ss_pred             ecCCCCeEEEEEeCCe
Q psy10772        341 VEELDAGKYDCWLGNT  356 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~~  356 (378)
                      |+..|+|.|.|.....
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999998753

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.45  E-value=0.00061  Score=55.87  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=47.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|......  ....+.|+.+...++...|-. .      ..+|+.....    -|-|.+++.+|+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~--~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           8 ATLSVSPGESATISCKASQSV--SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCC--CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            456788999999999975332  123699998754322211210 0      1123333221    28899999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus        86 Y~Ca~~~   92 (106)
T cd04980          86 YYCQQYG   92 (106)
T ss_pred             EEEEEeC
Confidence            9999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.45  E-value=0.00051  Score=55.09  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=46.3

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------ecc--CcceEe-----ecCceEEeeecCCCCeEEEE
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------FRS--DKFIRT-----VDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~~~--~~~~~~-----~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      +++.|+|......++....|.|+.+.... +..+-         ..+  ..|+..     .+-.|.|.+|+.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGS-KQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCC-CEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEE
Confidence            46889998865543222369999875421 11110         001  123222     23459999999999999999


Q ss_pred             EeCC----eeeEEEeeee
Q psy10772        352 WLGN----TVLCTHNLTV  365 (378)
Q Consensus       352 ~~~~----~~l~~~~~~v  365 (378)
                      ....    ......+|+|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            8653    4555556655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.43  E-value=0.00055  Score=58.10  Aligned_cols=81  Identities=22%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             CCeeeeeeeeccCCCCC--------CCCeEEEEeccc---C-cee-eE-eecc---------CcceEe-------ecCce
Q psy10772        287 GQSVHLSCFVKLPASMA--------NQPMSWYHYSKD---K-GRY-QI-KFRS---------DKFIRT-------VDGGL  336 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La--------~~~v~W~~~~~~---~-~~~-~l-~~~~---------~~~~~~-------~~~GL  336 (378)
                      |.++.|+|.-+..+.|+        ...|.|..-...   + .++ .+ .+..         .+|...       .+-.|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999998655443        247999775100   0 000 11 1111         113222       24559


Q ss_pred             EEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       337 lI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      .|.+|+.+|+|.|.|.-..   +......|+|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999998664   677777777754

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.39  E-value=0.0013  Score=55.28  Aligned_cols=81  Identities=21%  Similarity=0.372  Sum_probs=48.2

Q ss_pred             eCCeeeeeeeeccCCC---------CCCCCeEEEEecccCcee-------eEee--ccCcceEe-------ecCceEEee
Q psy10772        286 WGQSVHLSCFVKLPAS---------MANQPMSWYHYSKDKGRY-------QIKF--RSDKFIRT-------VDGGLVIMA  340 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~---------La~~~v~W~~~~~~~~~~-------~l~~--~~~~~~~~-------~~~GLlI~~  340 (378)
                      .|+++.|+|.-....+         +..+.|.|+.+...+...       ++++  +-.+|+..       .+-.|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            3899999998764321         113589998763210000       1111  11123322       345699999


Q ss_pred             ecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772        341 VEELDAGKYDCWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~---~~l~~~~~~v~  366 (378)
                      |+.+|+|+|.|....   +.-..-.|.|+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            999999999999864   34444445444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.39  E-value=0.00092  Score=55.73  Aligned_cols=82  Identities=24%  Similarity=0.347  Sum_probs=49.6

Q ss_pred             eCCeeeeeeeeccCCC-------CCCCCeEEEEecccCcee-------eEee--ccCcceEe-------ecCceEEeeec
Q psy10772        286 WGQSVHLSCFVKLPAS-------MANQPMSWYHYSKDKGRY-------QIKF--RSDKFIRT-------VDGGLVIMAVE  342 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~-------La~~~v~W~~~~~~~~~~-------~l~~--~~~~~~~~-------~~~GLlI~~v~  342 (378)
                      .|+++.|+|....+..       +....|.|+.+.......       ++..  .-.+|+..       ..-.|.|.+|+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999998865442       223479999873221111       0100  01124332       12239999999


Q ss_pred             CCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        343 ELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       343 ~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      .+|+|.|.|....   ..-....|+|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999863   445566666643

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.39  E-value=0.00034  Score=69.28  Aligned_cols=87  Identities=20%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             CCccccc-ccceeEEEEeCCeeeeeeee-----ccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC
Q psy10772        270 DSICESS-VGRLKQTVTWGQSVHLSCFV-----KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE  343 (378)
Q Consensus       270 ~~~C~~~-~~~k~~~~~~G~s~~L~C~~-----r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~  343 (378)
                      +..|..- ...|...+.+|..+.|.|.+     .+.+   .++|+|+.++.+..+ .+.       ...+.+|+|.++..
T Consensus        23 ~~~c~~~~~~~~~~~~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~-~~~-------~~~g~~l~i~~~~~   91 (326)
T PHA02785         23 APECIDKGQYFASFMELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDR-IIP-------IDNGSNMLILNPTQ   91 (326)
T ss_pred             ccCchhcccccchhhhhcCCCEEEECCCccccccCCC---CceEEEEECCCccce-EEE-------ccCCceEEEcccCc
Confidence            4568643 34677788899999999985     2222   357999998643111 111       11234699999999


Q ss_pred             CCCeEEEEEeCCee---eEEEeeeecc
Q psy10772        344 LDAGKYDCWLGNTV---LCTHNLTVDA  367 (378)
Q Consensus       344 ~DsG~Y~C~~~~~~---l~~~~~~v~~  367 (378)
                      +|+|.|.|.+.|..   -++-+|+|..
T Consensus        92 ~DsG~Y~C~a~N~~g~~~~s~~L~V~~  118 (326)
T PHA02785         92 SDSGIYICITKNETYCDMMSLNLTIVS  118 (326)
T ss_pred             ccCeEEEEEEECCCcceEEEEEEEEEe
Confidence            99999999999854   4556666644

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.24  E-value=0.00084  Score=63.31  Aligned_cols=92  Identities=22%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             Cccccc-ccceeEEEEeCCeeeeeeeeccCC-C-------CCCCCeEEEEecccCceeeEeeccC----------cceEe
Q psy10772        271 SICESS-VGRLKQTVTWGQSVHLSCFVKLPA-S-------MANQPMSWYHYSKDKGRYQIKFRSD----------KFIRT  331 (378)
Q Consensus       271 ~~C~~~-~~~k~~~~~~G~s~~L~C~~r~~~-~-------La~~~v~W~~~~~~~~~~~l~~~~~----------~~~~~  331 (378)
                      ..|... ...+.+.+.+|+++.|+|.+...+ .       ...++|.|+..+.. . + +.. ++          .++..
T Consensus        20 ~~c~~~~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~-~-~-v~~-~~~~~~~~~i~~~~~~~   95 (227)
T PHA02826         20 LYCKYRGGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL-A-F-VRD-SGARTKIKKITHNEIGD   95 (227)
T ss_pred             ccchhhCcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE-E-E-EEc-CCCccccccccccceec
Confidence            447532 346888999999999999964211 0       23458999886432 0 0 110 01          11111


Q ss_pred             ecCceEEeeecCCCCeEEEEEeCCee---eEEEeeeec
Q psy10772        332 VDGGLVIMAVEELDAGKYDCWLGNTV---LCTHNLTVD  366 (378)
Q Consensus       332 ~~~GLlI~~v~~~DsG~Y~C~~~~~~---l~~~~~~v~  366 (378)
                      -+..|.|.+++.+|+|.|.|.+.|..   -++-.|+|.
T Consensus        96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~  133 (227)
T PHA02826         96 RSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFD  133 (227)
T ss_pred             CCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe
Confidence            24579999999999999999999844   344556664

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.23  E-value=0.0024  Score=51.51  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCcee------eEe--e--ccCcceEee----cC---ceEEeeecCCCCeEE
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY------QIK--F--RSDKFIRTV----DG---GLVIMAVEELDAGKY  349 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~------~l~--~--~~~~~~~~~----~~---GLlI~~v~~~DsG~Y  349 (378)
                      |+++.|+|.-..........|.|+......-.+      ...  .  .-.+|+...    .+   .|.|.+|+.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            788999998753322222357886543210000      000  0  011243321    12   399999999999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|...+
T Consensus        81 ~C~v~~   86 (100)
T cd05713          81 TCFFQS   86 (100)
T ss_pred             EEEEec
Confidence            999985

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.23  E-value=0.0013  Score=52.12  Aligned_cols=72  Identities=17%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCC------eeeEEEe
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN------TVLCTHN  362 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~------~~l~~~~  362 (378)
                      +.|.|..+  .+-|.|.++|+.++.+-..  ... ...........-|.|......|.|.|.|.+.|      ....+|.
T Consensus         2 ~~L~C~s~--~skP~a~i~W~k~~~~l~~--~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~   77 (80)
T cd05885           2 VELTCLSP--RSKPAATLRWYRDRKELKG--VISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYS   77 (80)
T ss_pred             EEEEEeCC--CccCCCeEEEEECCEECCC--CcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEE
Confidence            56899874  3445578999998875111  000 11222233333488888888889999999998      3455666


Q ss_pred             eee
Q psy10772        363 LTV  365 (378)
Q Consensus       363 ~~v  365 (378)
                      |+|
T Consensus        78 l~V   80 (80)
T cd05885          78 LDV   80 (80)
T ss_pred             EeC
Confidence            654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.13  E-value=0.0016  Score=54.24  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee---cC---ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV---DG---GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~---~~---GLlI~~v~~~D  345 (378)
                      .+.+.+..|+++.|+|..+...  ....+.|+.+.......-|..       ..++|+...   .+   -|.|.+++.+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~--~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSW--TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCC--CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            3567888999999999876432  123689988753322111110       113454443   12   39999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|....
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.11  E-value=0.0031  Score=51.50  Aligned_cols=67  Identities=21%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             eeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---ec--------cCcceEee------cCceEEeeecCCCCeEEEE
Q psy10772        289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---FR--------SDKFIRTV------DGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---~~--------~~~~~~~~------~~GLlI~~v~~~DsG~Y~C  351 (378)
                      ++.|+|.-....+.....|.|+.+........+.   ..        -.+|....      +..|.|.+|+.+|+|+|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            6789998754332222378998864321111111   00        01232222      3459999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      ...+
T Consensus        82 ~v~~   85 (100)
T cd05888          82 RVIT   85 (100)
T ss_pred             EEEe
Confidence            9654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.08  E-value=0.0018  Score=54.33  Aligned_cols=81  Identities=21%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             CCeeeeeeeeccCCCC----CCCCeEEEEeccc------------CceeeEeeccCcceEe-------ecCceEEeeecC
Q psy10772        287 GQSVHLSCFVKLPASM----ANQPMSWYHYSKD------------KGRYQIKFRSDKFIRT-------VDGGLVIMAVEE  343 (378)
Q Consensus       287 G~s~~L~C~~r~~~~L----a~~~v~W~~~~~~------------~~~~~l~~~~~~~~~~-------~~~GLlI~~v~~  343 (378)
                      |.++.|+|.-+.+++.    ..+.|.|.+....            .+...+..+-.+|+..       .+-.|.|.+|+.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            7889999995544331    2468999876321            1110111011223333       233599999999


Q ss_pred             CCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        344 LDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       344 ~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      +|+|.|.|.-..   ..-+...|+|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999998764   556667777653

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.06  E-value=0.002  Score=53.07  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc---CceeeE-ee----------cc-CcceEe--ecCc----eEEee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQI-KF----------RS-DKFIRT--VDGG----LVIMA  340 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~---~~~~~l-~~----------~~-~~~~~~--~~~G----LlI~~  340 (378)
                      +++.+|+++.|.|..+....  ...+.|+.+...   .+..-| ..          +. .+++..  ...+    |-|.+
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   78 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINR   78 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECC
Confidence            35778999999998754221  126899988543   111001 00          00 234332  2222    99999


Q ss_pred             ecCCCCeEEEEEeC
Q psy10772        341 VEELDAGKYDCWLG  354 (378)
Q Consensus       341 v~~~DsG~Y~C~~~  354 (378)
                      ++.+|+|.|.|...
T Consensus        79 ~~~~Dsg~YyCa~~   92 (107)
T cd07700          79 VKPEDSGTYFCMTV   92 (107)
T ss_pred             CCHHHCEEEEEeEc
Confidence            99999999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG4221|consensus

Probab=97.06  E-value=0.0033  Score=70.36  Aligned_cols=99  Identities=19%  Similarity=0.287  Sum_probs=68.8

Q ss_pred             CCeEEEEEEECCCeeEEE--EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC
Q psy10772        239 TSEYIVYFAATTTLRTVF--VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK  316 (378)
Q Consensus       239 ~~~ytV~flGT~~G~v~~--V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~  316 (378)
                      ++.|.|+-=+++-|.|+-  +...+.+.+     ..-.   -.-..++..|+++.+.|++-.   .+-|.++|++|..+ 
T Consensus       113 eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~-----~f~~---~~~~~t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~p-  180 (1381)
T KOG4221|consen  113 EGVYQCLATVEDVGSILSRTAKVALAGLA-----DFAL---QPESTTLLYGQTALFSCEVNA---EPVPTIMWLKNDQP-  180 (1381)
T ss_pred             CceEEEEEEccccceeecceEEEEecccC-----cccc---CccceeEecCCcEEEEEEEcC---ccCceeEEeccccc-
Confidence            588998877778888871  111222222     1000   122457888999999999854   33357999998765 


Q ss_pred             ceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772        317 GRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       317 ~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~  355 (378)
                          |.  .++|+++.-+| |+|.+++..|.|.|.|...+
T Consensus       181 ----l~--~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~  214 (1381)
T KOG4221|consen  181 ----LP--LDSRVIVLPSGALEISGLQPSDTGEYRCVVTG  214 (1381)
T ss_pred             ----cc--CCCcEEEcCCCcEEecccccCCCceEEEEEec
Confidence                43  44577777666 99999999999999999987

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.06  E-value=0.0017  Score=59.09  Aligned_cols=89  Identities=21%  Similarity=0.247  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEeecc--CcceEe-----ecCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKFRS--DKFIRT-----VDGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~~~--~~~~~~-----~~~GLlI~~v~~~DsG~  348 (378)
                      ...+.|.+|+++.|.|.-+.+..  .+.|+|+.+.+.-.-|   ...+.+  .+|+..     .+.+|.|.+|+.+|+|+
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~--~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGc   99 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFN--SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGC   99 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCc--cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeE
Confidence            46788999999999999753433  2479998874321001   111111  124443     56789999999999999


Q ss_pred             EEEEeCC-----eeeEEEeeeecccc
Q psy10772        349 YDCWLGN-----TVLCTHNLTVDAHS  369 (378)
Q Consensus       349 Y~C~~~~-----~~l~~~~~~v~~~~  369 (378)
                      |.|.-+-     ..-+.=+|+|.+.+
T Consensus       100 Y~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        100 YTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEEecCCCCCceeEEEEEEEchh
Confidence            9998762     34445556665544

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.04  E-value=0.0022  Score=51.69  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------eccCcceEeec---C---ceEEeeecCCCCeEE
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------FRSDKFIRTVD---G---GLVIMAVEELDAGKY  349 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------~~~~~~~~~~~---~---GLlI~~v~~~DsG~Y  349 (378)
                      +.+.+|+++.|+|.....  .....+.|+.+.......-|.      ....+|+....   .   -|.|.+|+.+|+|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~--~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           2 VTGELGGSVTIPCPYPPK--NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEEeCCeEEEEeeCCCC--CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEE
Confidence            578899999999987532  122368998775432111110      01123333321   1   399999999999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|....
T Consensus        80 ~C~~~~   85 (98)
T cd05716          80 WCGVGD   85 (98)
T ss_pred             EEEccc
Confidence            998875

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.03  E-value=0.002  Score=52.96  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=44.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc--CceeeEe-ec------------cCcceEeecC----ceEEeeecC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD--KGRYQIK-FR------------SDKFIRTVDG----GLVIMAVEE  343 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~--~~~~~l~-~~------------~~~~~~~~~~----GLlI~~v~~  343 (378)
                      .+.+|+++.|.|.+.....   ..+.|+.+...  .+..-|- ..            ...|+.....    -|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~---~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~   78 (104)
T cd05720           2 DAELGQKVELKCEVLNSSP---TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK   78 (104)
T ss_pred             cccCCCeEEEEEEecCCCC---CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence            3567999999998753322   36899998643  2221111 00            0223332221    299999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|....
T Consensus        79 sDsgtY~Ca~~~   90 (104)
T cd05720          79 ENEGYYFCSVAS   90 (104)
T ss_pred             HHCEEEEEEEcc
Confidence            999999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>KOG4222|consensus

Probab=97.02  E-value=0.00092  Score=74.18  Aligned_cols=71  Identities=23%  Similarity=0.365  Sum_probs=56.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-CcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-DKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..|.+.+..|+.+.|+|-+  |.-.+.|.|.|.-.+++     |.... ..+.++.+.-|+|.+|.++|+|.|.|.++|
T Consensus       137 ~prd~~~a~ge~avlEcgp--P~ghpeptvSw~Kdg~p-----l~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatN  208 (1281)
T KOG4222|consen  137 SPRDVQAAVGEEAVLECGP--PRGHPEPTVSWVKDGKP-----LDHYDVPIIALISGGNLLISNVRKSDEGTYACVATN  208 (1281)
T ss_pred             CcccccccccceeEEeccC--CCCCCCCcceeecCCCc-----cccccceeEEEecCCcEEEeccccCCCceeeeeecc
Confidence            3456778889999999998  88888899999877765     32212 224556666699999999999999999997

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.93  E-value=0.00093  Score=53.52  Aligned_cols=65  Identities=18%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      ..+.+|+++.|.|....+    .....|+.++....   .+. ...  .....-+.|.+|+.+|+|.|.|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~~~----~~~f~l~k~g~~~~---~~~-~~~--~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGPYG----AVEYRLYREGSTFA---VKK-PPE--PQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecCCC----CCEEEEEECCCCcc---ccc-cCC--CceeEEEEccCCChhHCEEEEEEEECC
Confidence            356789999999987533    22456665554311   110 110  122344889999999999999998764

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG4194|consensus

Probab=96.92  E-value=0.0017  Score=68.33  Aligned_cols=82  Identities=21%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc--eEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF--IRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~--~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+++..-|+-+.|+|...+.|+   |.|.|...+.++    ..+-.+.|  +...++-..|.+|..+|+|.|.|.+.|  
T Consensus       620 ~dltl~tg~mArl~CaAtG~P~---PeIawqkdggtd----FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~A  692 (873)
T KOG4194|consen  620 EDLTLRTGQMARLECAATGHPR---PEIAWQKDGGTD----FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVA  692 (873)
T ss_pred             ccceeecccceeeeeeccCCCC---cceeehhcCCCC----CchhhhheeeecCCCCEEEEecccccccceeEEeeeccc
Confidence            4566677999999999988877   789997765431    11112223  233467789999999999999999998  


Q ss_pred             -eeeEEEeeeeccc
Q psy10772        356 -TVLCTHNLTVDAH  368 (378)
Q Consensus       356 -~~l~~~~~~v~~~  368 (378)
                       +.-+.=.|+|.+.
T Consensus       693 G~isanAtL~V~e~  706 (873)
T KOG4194|consen  693 GQISANATLTVLET  706 (873)
T ss_pred             cceeeceEEEEecC
Confidence             7777777777664

>smart00406 IGv Immunoglobulin V-Type

Probab=96.89  E-value=0.0028  Score=48.23  Aligned_cols=63  Identities=24%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             eeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeecC---c---eEEeeecCCCCeEEEE
Q psy10772        289 SVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVDG---G---LVIMAVEELDAGKYDC  351 (378)
Q Consensus       289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~~---G---LlI~~v~~~DsG~Y~C  351 (378)
                      ++.|+|....... +...|.|+.+.......-|..           ...+|+..+..   +   |.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~-~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTF-SSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEEecccc-ceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence            3679998764332 112689988764222111111           12345554443   2   8899999999999999


Q ss_pred             E
Q psy10772        352 W  352 (378)
Q Consensus       352 ~  352 (378)
                      .
T Consensus        80 ~   80 (81)
T smart00406       80 A   80 (81)
T ss_pred             c
Confidence            5

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.88  E-value=0.0055  Score=47.68  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEeccc--CceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKD--KGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~--~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|...+-  -|.+.|+|+.++.+  .+.......++........=|.|......|.|.|.|.+.+
T Consensus         2 ~~L~C~v~g~--~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n   67 (82)
T cd05759           2 YNLTCRARGA--KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN   67 (82)
T ss_pred             EEEEEEEeCc--cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence            5799998652  22358999998754  1110000011111111122244555555678899999987

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.86  E-value=0.004  Score=52.34  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC---CCCeEEEEecccCceeeEe----------eccCcceEee---cC---ceEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA---NQPMSWYHYSKDKGRYQIK----------FRSDKFIRTV---DG---GLVIM  339 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La---~~~v~W~~~~~~~~~~~l~----------~~~~~~~~~~---~~---GLlI~  339 (378)
                      .+.+.+.+|+++.|+|.-..|.++.   ...+.|+.+...+....+.          .+-.+|+...   ..   .|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3457899999999999765554211   1258998874321000010          0111343331   22   39999


Q ss_pred             eecCCCCeEEEEEeC
Q psy10772        340 AVEELDAGKYDCWLG  354 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~  354 (378)
                      +++.+|+|.|.|...
T Consensus        86 ~l~~~Dsg~Y~C~~~  100 (119)
T cd05712          86 DAQPEDSGKYFFRVE  100 (119)
T ss_pred             cCChhhCeEEEEEEE
Confidence            999999999999874

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.84  E-value=0.001  Score=49.42  Aligned_cols=58  Identities=26%  Similarity=0.413  Sum_probs=37.9

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.|.|.....+.  .+.++|+ ...+  . ...  ..........-|.|.+++.+|.|.|.|.+.|
T Consensus        18 ~~l~C~~~~~~~--~~~~~W~-~~~~--~-~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPP--PPSISWY-DSNP--S-FNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEES--SEEEEEE-TEEE--E-EEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccC--CeEEEEE-ecCC--c-eee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            999999977653  3579998 1111  0 010  1111223455688889999999999999864

...

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.78  E-value=0.0074  Score=48.75  Aligned_cols=66  Identities=23%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e--ccCcceEe-----ecCceEEeeecCCCCeEEE
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F--RSDKFIRT-----VDGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~  350 (378)
                      |+++.|+|........  -.|.|+..... ....|.         .  .-.+|+..     .+-.|.|.+|+.+|+|.|.
T Consensus         1 G~~vtL~C~~~~~~~~--~~v~W~k~~~~-~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPEEV--LQVTWQKIQGS-SPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYK   77 (97)
T ss_pred             CCcEEEEEEeCCCCee--EEEEEEEcCCC-CceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEE
Confidence            7899999986544331  15899764321 110110         0  01112222     2333999999999999999


Q ss_pred             EEeCC
Q psy10772        351 CWLGN  355 (378)
Q Consensus       351 C~~~~  355 (378)
                      |....
T Consensus        78 C~~~~   82 (97)
T cd05846          78 CIFNT   82 (97)
T ss_pred             EEEEe
Confidence            99764

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.72  E-value=0.01  Score=48.49  Aligned_cols=68  Identities=19%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e--ccCcceEe-----ecCceEEeeecCCCCeEEEE
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F--RSDKFIRT-----VDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      .++.|+|.-+.+..+  ..|+|...... +...+-         +  .-.+|+..     .+-.|.|.+|+.+|+|+|.|
T Consensus         1 ~~vtL~C~~~~~~~~--~qV~W~k~~~~-~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C   77 (96)
T cd05887           1 KNVTLKCRIQVNETI--TQSSWEKIHGK-GSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYIC   77 (96)
T ss_pred             CCEEEEEEecCCCcE--EEEEEEEcCCC-CcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEE
Confidence            367899998755443  37899765321 100010         0  01123332     36679999999999999999


Q ss_pred             EeCCeee
Q psy10772        352 WLGNTVL  358 (378)
Q Consensus       352 ~~~~~~l  358 (378)
                      ....-+.
T Consensus        78 ~v~tfP~   84 (96)
T cd05887          78 KAVTFPL   84 (96)
T ss_pred             EEEeCCC
Confidence            9765333

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.70  E-value=0.012  Score=48.59  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccC---ceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDK---GRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~---~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      -.+.|..|.++.|.|....   -|+|. +.|...+..-   ..+.+..+... -.....=|.+.+|..+|+|.|.|.+.|
T Consensus        11 ~~~~v~~gE~~~L~V~ieA---YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~-~~rY~S~L~L~Rlk~~E~G~YTf~a~N   86 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEA---YPKPEHQQWIYMNRTLTNTSDHYVKSRNES-NNRYVSELHLTRLKGTEGGTYTFLVSN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEe---CCCCeeeEEEcCCcccCccccceeEEeccC-ceEEEEEEEEeecChhhCcEEEEEEEC
Confidence            3567889999999999854   44455 8998775431   00011111100 011223588999999999999999998


Q ss_pred             ---eeeEEEeeeec
Q psy10772        356 ---TVLCTHNLTVD  366 (378)
Q Consensus       356 ---~~l~~~~~~v~  366 (378)
                         +.-.+++|+|.
T Consensus        87 ~~~~~s~tF~l~v~  100 (101)
T cd05860          87 SDASASVTFNVYVN  100 (101)
T ss_pred             CCCeEEEEEEEEEe
Confidence               55666666654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.66  E-value=0.0054  Score=51.62  Aligned_cols=73  Identities=23%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEee-cC-----ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTV-DG-----GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~-~~-----GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..+... .....+.|+.+...+...-|- .           ...+|+... +.     -|.|.+++
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~-~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFT-FTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCC-cccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            35677899999999874322 112358999886543321110 0           012344432 11     28999999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|-+.
T Consensus        85 ~~Dsa~YyCa~~   96 (117)
T cd04981          85 PEDTAVYYCARG   96 (117)
T ss_pred             HHHCEEEEEEEE
Confidence            999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.40  E-value=0.011  Score=48.41  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             eeeeeeeeccCCCCCCCCeEEEEecccCce--------eeEee--ccCcceEe-----ecCceEEeeecCCCCeEEEEEe
Q psy10772        289 SVHLSCFVKLPASMANQPMSWYHYSKDKGR--------YQIKF--RSDKFIRT-----VDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       289 s~~L~C~~r~~~~La~~~v~W~~~~~~~~~--------~~l~~--~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.|+|.-.....+  ..|+|.+.......        +...+  .-.+|+..     .+.+|.|.+|+.+|+|.|.|..
T Consensus         2 ~vtL~C~~~~~~~~--~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~   79 (96)
T cd05889           2 KMKLECVYPKTGVL--IQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL   79 (96)
T ss_pred             CEEEEeEcCCCCcE--EEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence            46789987543332  36889875431000        00111  01134332     3577999999999999999998


Q ss_pred             CCeeeEEE
Q psy10772        354 GNTVLCTH  361 (378)
Q Consensus       354 ~~~~l~~~  361 (378)
                      ..-+..++
T Consensus        80 ~t~P~g~~   87 (96)
T cd05889          80 VTYPQGSW   87 (96)
T ss_pred             EeCCCCCe
Confidence            76444443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.33  E-value=0.011  Score=47.82  Aligned_cols=65  Identities=18%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+|++|.|.|..... .   -...|+.++.......+.-+...+   ..--+.|..++..|+|.|.|..
T Consensus        10 ~vV~~G~~VTL~C~~~~~-~---~~f~l~k~g~~~~~~~~~~~~~~~---~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711          10 PVVPSGENVTLQCHSDIR-F---DRFILYKEGRSKPVLHLYEKHHGG---FQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CccCCCCeEEEEEecCCC-C---CEEEEEECCCCCCceecccccCCe---EEEEEEecCCCcccCEEEEEEE
Confidence            456789999999976432 2   256787766543211110000111   1224689999999999999995

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00096 Ig Immunoglobulin domain

Probab=96.08  E-value=0.015  Score=40.74  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      +.|.|....+   +.+.+.|+.++......... .............|.|.++...|+|.|.|.....
T Consensus         1 ~~l~C~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   65 (74)
T cd00096           1 VTLTCLASGP---PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS   65 (74)
T ss_pred             CEEEEEecCC---CCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence            3688998652   23479999886542221110 0011222344556999999999999999998764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.02  E-value=0.041  Score=45.15  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=21.0

Q ss_pred             cCceEEeeecCCCCeEEEEEeCC
Q psy10772        333 DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       333 ~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +-.|.|.+|+.+|.|+|.|...+
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t   84 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFAT   84 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEe
Confidence            36799999999999999999887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02633 hypothetical protein; Provisional

Probab=95.90  E-value=0.019  Score=43.06  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             CceEEeeecCCCCeEEEEEeCCeeeE---EEeeeeccc
Q psy10772        334 GGLVIMAVEELDAGKYDCWLGNTVLC---THNLTVDAH  368 (378)
Q Consensus       334 ~GLlI~~v~~~DsG~Y~C~~~~~~l~---~~~~~v~~~  368 (378)
                      .-|.|.++..+|+|.|.|.-.|..+|   +.+|+|...
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            34999999999999999999986655   677877654

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=95.84  E-value=0.045  Score=44.04  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeC---CeeeE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG---NTVLC  359 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~---~~~l~  359 (378)
                      .+..|+++.|.|...+.+. |.+.|+|.-.+.. ..+++.        ....-|.+.+|..+|+|...|.-.   ...-+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~-p~~~i~w~~P~n~-~~~~~~--------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSL-PAFKVEWRGPGNK-SKQILN--------QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             eeecCCcEEEEEecCCCCC-CCccEEEeCCCCc-cceecc--------CCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence            5678999999999743322 2348999754432 111110        234568899999999999999874   25556


Q ss_pred             EEeeeec
Q psy10772        360 THNLTVD  366 (378)
Q Consensus       360 ~~~~~v~  366 (378)
                      ..+|.|-
T Consensus        80 ~~~V~Vl   86 (88)
T cd07694          80 KLDIKVL   86 (88)
T ss_pred             EeeEEEE
Confidence            6666664

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.67  E-value=0.045  Score=41.60  Aligned_cols=54  Identities=17%  Similarity=0.325  Sum_probs=37.0

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      -++|.+|.|.|...     + ..+.|..|...     +.   +     .+..+++.+-. +++|.|.|.+.+..
T Consensus         4 sisGTtVtlTCP~~-----~-~~i~W~~n~~~-----~~---g-----~~~~~~~~~~~-e~~G~Y~C~~~~~~   57 (65)
T cd07692           4 SISGTTVTVTCPLS-----G-DDIKWKKNDQV-----SQ---G-----SDEKYLSLNHF-SSSGYYHCTADNAN   57 (65)
T ss_pred             EEeccEEEEECCCC-----C-CCceEEeCCcc-----CC---C-----CCceEEeeccC-CCCceEEEEeCCCc
Confidence            46799999999642     1 24899988642     21   1     23445565655 88999999998754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03376 BARF1; Provisional

Probab=94.97  E-value=0.088  Score=48.30  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc--c------CceeeEeeccCc--ceEe-ecCc---eEEeeecCCCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK--D------KGRYQIKFRSDK--FIRT-VDGG---LVIMAVEELDA  346 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~--~------~~~~~l~~~~~~--~~~~-~~~G---LlI~~v~~~Ds  346 (378)
                      .+++..|.++.|+|.-+.-+.-+.-.|+|+-.+.  +      .+...+-.+=+.  +... .+.|   |+|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            6777889999999998622222444789976322  1      111111111111  2211 1123   99999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|....
T Consensus       100 GtY~C~fQk  108 (221)
T PHA03376        100 GNYLCRMKL  108 (221)
T ss_pred             ceEEEEEEc
Confidence            999999886

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=94.30  E-value=0.3  Score=38.12  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccCcceEeecCceEEeeecCCC-CeEEEEEeCCee------eEEE
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSDKFIRTVDGGLVIMAVEELD-AGKYDCWLGNTV------LCTH  361 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C~~~~~~------l~~~  361 (378)
                      +.|.|....-  -|.+.|+|+.++.+-...... ..+++.-... ...|...++..| .+.|.|.+.+..      ..++
T Consensus         2 ~~L~C~~~~~--~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~-~s~l~~~~~~~d~g~~~~C~v~h~~l~~~~~~~~~   78 (82)
T cd05761           2 VELTCTSSGS--KPAATIRWFKGDKELKGVKLKEEDENGKTFTV-TSSLRFQVDREDDGAPIICRVDHPALKSTDKQTQQ   78 (82)
T ss_pred             EEEEEEecCc--CcCCeEEEEECCEEccCceeeEecCCCCEEEE-EEEEEEEcchhhCCCEEEEEEeChhcCCCCceeEE
Confidence            4689988542  223589999987641100000 0111111111 223444555555 569999999843      3677


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|+|
T Consensus        79 ~~~~   82 (82)
T cd05761          79 VLEV   82 (82)
T ss_pred             EEeC
Confidence            7654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=93.97  E-value=0.39  Score=37.77  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=38.3

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCc--eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC------eeeEEE
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKG--RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN------TVLCTH  361 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~--~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~------~~l~~~  361 (378)
                      +.|.|...+-  -|.+.|+|+.++.+-.  ...+....+..-+.+..-|.|......|...|.|.+..      .+.-+|
T Consensus         2 ~~LtC~a~g~--~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~   79 (83)
T cd07705           2 AKLRCTSSGS--KPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQ   79 (83)
T ss_pred             EEEEEEecCc--cCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEE
Confidence            5689998532  2335899998875411  10111111111111122233333345567899999997      334455


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|+|
T Consensus        80 ~~~~   83 (83)
T cd07705          80 RIEV   83 (83)
T ss_pred             EeeC
Confidence            5544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=92.77  E-value=0.54  Score=37.34  Aligned_cols=72  Identities=19%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCce-eeEeeccCcceEeecCceEEeeecCCC-CeEEEEEeCCee----eEEEee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGR-YQIKFRSDKFIRTVDGGLVIMAVEELD-AGKYDCWLGNTV----LCTHNL  363 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~-~~l~~~~~~~~~~~~~GLlI~~v~~~D-sG~Y~C~~~~~~----l~~~~~  363 (378)
                      +.|.|...  .+-|.+.|+|+.++.+-.. .+.....++. ..+..-|.| .++..| ...|.|.+.+..    ..++.|
T Consensus         2 ~~L~C~s~--gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~-~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L   77 (82)
T cd05883           2 IELNCTAM--ASKPAATIRWFKGNKELTGKSTVEETWSRM-FTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYL   77 (82)
T ss_pred             EEEEEEec--CCCCCCEEEEEECCEECcCcccceeccCCC-cEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence            46889873  3445579999987765111 0110001122 222333544 455555 568999998843    344555


Q ss_pred             ee
Q psy10772        364 TV  365 (378)
Q Consensus       364 ~v  365 (378)
                      .|
T Consensus        78 ~V   79 (82)
T cd05883          78 EV   79 (82)
T ss_pred             EE
Confidence            44

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00098 IgC Immunoglobulin Constant domain

Probab=92.68  E-value=0.13  Score=40.53  Aligned_cols=68  Identities=18%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCce----EEeeecCC---CCeEEEEEeCCeee
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL----VIMAVEEL---DAGKYDCWLGNTVL  358 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GL----lI~~v~~~---DsG~Y~C~~~~~~l  358 (378)
                      .|+.+.|.|...+-.. +.+.|+|+.++.+......    ........+|.    ....+...   |.|.|.|.+.+..+
T Consensus        12 ~~~~~~L~C~a~g~~P-~~~~i~W~~~g~~~~~~~~----~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYP-PDITVTWLKNGKELTSGVT----TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEEC-CCcEEEEEECCEECCCcee----ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            5889999999876411 0137899998764111000    01112223331    11234444   99999999986433

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>KOG4194|consensus

Probab=92.61  E-value=1.4  Score=47.15  Aligned_cols=108  Identities=20%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             EEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCCC
Q psy10772        227 VVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQ  305 (378)
Q Consensus       227 aVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~  305 (378)
                      -+..|..+|   .+-|++.-. ..-|.|.- +...+++.     |+--   ++...+.++.|+.+.|.|...+.++  .|
T Consensus       672 ~Itnvk~eD---~GiYtC~A~-n~AG~isanAtL~V~e~-----p~f~---~PL~~~~V~~get~vlqC~a~~~~a--~p  737 (873)
T KOG4194|consen  672 FITNVKIED---QGIYTCTAQ-NVAGQISANATLTVLET-----PSFS---IPLEDQLVVVGETLVLQCLAEGAPA--DP  737 (873)
T ss_pred             EEecccccc---cceeEEeee-ccccceeeceEEEEecC-----Cccc---ccccceEEEecceEEEEEecCCCCC--Cc
Confidence            344444444   477888833 34455432 12233332     2211   2445667888999999999865544  46


Q ss_pred             CeEEEEecccCceeeEeeccCcceE--eecCceEEeeecCCCCeEEEEEeCC
Q psy10772        306 PMSWYHYSKDKGRYQIKFRSDKFIR--TVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       306 ~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.|+-..++     |.+  .+|+.  -.+|=|++.+..-.|+|.|.|.--+
T Consensus       738 r~~W~k~d~p-----il~--t~rh~f~d~dQllvv~~~~~~daG~yTcem~~  782 (873)
T KOG4194|consen  738 RLEWFKEDKP-----ILI--TERHTFPDGDQLLVVKENLVEDAGIYTCEMSN  782 (873)
T ss_pred             cccccCCCCc-----eEE--eecccCCCCCeEEEEEehhhhhcceEEEEEEe
Confidence            7899876665     432  22222  2244477888889999999998876

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=90.17  E-value=0.36  Score=46.31  Aligned_cols=47  Identities=19%  Similarity=0.529  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEecccCceeeEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeC
Q psy10772        302 MANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       302 La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~  354 (378)
                      |..|.-.|.-.+   ++ .|.  ...++.+|+.| |++.+...++||.|.|.+.
T Consensus        10 ~iDP~y~W~GP~---g~-~l~--gn~~~nIT~TG~L~~~~F~esmSG~YTCtLs   57 (271)
T PF07354_consen   10 LIDPTYLWTGPN---GK-PLS--GNSYVNITETGKLMFKNFQESMSGSYTCTLS   57 (271)
T ss_pred             cCCCceEEECCC---Cc-ccC--CCCeEEEccCceEEeeccccccCCceEEEEE
Confidence            455677997542   22 133  45567777777 9999999999999999875

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=89.45  E-value=0.15  Score=55.24  Aligned_cols=64  Identities=27%  Similarity=0.449  Sum_probs=49.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|.+++...|.|.+  |..-+.+.+.|+.|+..     ++  +++ -+..++++|.|+.+...|+|.|.|.+.|
T Consensus       140 ~V~~~s~~~l~cr~--pe~~paae~~w~k~e~~-----~~--pd~n~~~~~d~~li~~~arlsd~~nytc~a~n  204 (909)
T KOG1480|consen  140 EVQEETTLQLPCRP--PEGDPKAEVEWLKNEVV-----ID--PDANVIRASDHNLIISQARLSDSGNYTCEATN  204 (909)
T ss_pred             eecccccccccccC--cccchhhhhhccccCCC-----CC--ccccchhhhcCCccccchhhhhcccceeeeeh
Confidence            45667778899886  65555567899987643     32  333 4567899999999999999999999998

>KOG4222|consensus

Probab=89.05  E-value=0.49  Score=53.42  Aligned_cols=81  Identities=25%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      +.+.+.+..|.++...|.+.+-+.   |+|+|.-....     +. +...+++.-+++|-|.+++..|-|.|.|++.|  
T Consensus       231 rp~~~~v~~g~~~~f~c~v~GdP~---P~Vrwkk~~~~-----~P-~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~v  301 (1281)
T KOG4222|consen  231 RPKDLAVLVGAAAEFDCRVGGDPQ---PTVRWKKDDPS-----LP-RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLV  301 (1281)
T ss_pred             ccccceeecccccccccccCCCCC---CceeeeccCCC-----CC-ccceeeeeccccccccccCCCcccceeeeccccc
Confidence            456788899999999999865444   68999763322     21 01122334458999999999999999999998  


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       .+-++=.++|.+
T Consensus       302 G~l~asa~ltV~a  314 (1281)
T KOG4222|consen  302 GGLEASATLTVQA  314 (1281)
T ss_pred             cccccccceEEec
Confidence             444555555544

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=87.57  E-value=0.98  Score=37.20  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCC--eEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCe-EEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAG-KYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~--v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG-~Y~C~~~~  355 (378)
                      .+.+|+.+.|.|.+..-  -|.+.  |+|+..+.+-.+.... ...+.......-|. ..+...|-| .|.|.+..
T Consensus        12 ~~~eG~~~tL~C~v~g~--~P~a~L~i~W~rG~~~l~~~~~~-~~~~~~~~~~stlt-~~~~r~D~g~~~sC~A~l   83 (100)
T cd05755          12 WQPVGKNYTLQCDVPGV--APRQNLTVVLLRGNETLSRQPFG-DNTKSPVNAPATIT-ITVDREDHGANFSCETEL   83 (100)
T ss_pred             cccCCCcEEEEEEEcCc--CCCCcEEEEEeeCCEEcccceec-cccCCCceeEEEEE-EecchhhCCcEEEEEEEe
Confidence            46789999999998543  23344  7998765541110010 00001111122233 456778877 99999986

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=87.35  E-value=2.3  Score=36.04  Aligned_cols=73  Identities=8%  Similarity=0.001  Sum_probs=44.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCC-CCeEEEEecccCceeeEee---------ccCcceEeec----Cc--eEEeeecC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIKF---------RSDKFIRTVD----GG--LVIMAVEE  343 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~-~~v~W~~~~~~~~~~~l~~---------~~~~~~~~~~----~G--LlI~~v~~  343 (378)
                      ...++.+|+++.|.|...+. .++. -.+.|..+... +-+-+-.         ....++..+.    +.  |-|.+|+.
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~-~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYN-GFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCC-ccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            34678889999999988544 3443 36789877543 2110110         0112222211    11  88999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|...
T Consensus        84 ~DTa~Y~Ca~e   94 (115)
T cd05721          84 NQTDIYFCKIE   94 (115)
T ss_pred             HHCeEEEEEee
Confidence            99999999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG3515|consensus

Probab=86.51  E-value=0.49  Score=51.69  Aligned_cols=64  Identities=20%  Similarity=0.355  Sum_probs=49.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      -+..|++|.|+|.+++.+.+  +.+.|+|..+.     ++   +.+..+.++=|+..+..+..-+.|.|.+.|.
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns   81 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSG-----EH---GRYATIADPTLVTTGDVRDTVAELNCRAFNS   81 (741)
T ss_pred             hhccCCcceeeeecCCCCCC--cceEEEecCcc-----cc---cccccccCCceeeecchhhhhhhhhhhhccc
Confidence            56679999999999877665  47999998764     32   3344455667777777888889999999984

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=83.75  E-value=8.6  Score=32.69  Aligned_cols=31  Identities=10%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecc
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSK  314 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~  314 (378)
                      ....|+.+.|.|...+-... .+.|+|+.++.
T Consensus        49 ~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~   79 (139)
T cd05771          49 VSMIEEPQTLICHIAGYYPL-DVQVEWTREPP   79 (139)
T ss_pred             eeecCCcEEEEEEECCCCCC-CeEEEEEECCC
Confidence            34478899999999762111 13789998864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=82.39  E-value=6.6  Score=30.79  Aligned_cols=66  Identities=15%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCcee-eEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRY-QIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      +.|.|...+-  -|.+.|+|+.|+.+-... .... .+.+.-..+-.-|.|..-...|...|.|.+.+..
T Consensus         2 ~~LtC~a~gf--~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGS--KPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCc--cCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            4688998642  223589999987651100 0000 0111111112234443222445679999998743

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=81.82  E-value=6.2  Score=31.33  Aligned_cols=61  Identities=21%  Similarity=0.428  Sum_probs=36.8

Q ss_pred             CCeeeeeeeecc--CCCCCCCCeEEEEecc-cCceeeEeeccCcceEeecCce----EEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKL--PASMANQPMSWYHYSK-DKGRYQIKFRSDKFIRTVDGGL----VIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~-~~~~~~l~~~~~~~~~~~~~GL----lI~~v~~~DsG~Y~C~~~~  355 (378)
                      |+.+.|.|...+  |+.+   .|+|+.++. ....  .   ....+...++|.    -.+.|...|.+.|.|....
T Consensus        14 ~~~~~L~C~a~gF~P~~i---~v~W~~~g~~~~~~--~---~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H   81 (93)
T cd07698          14 DGSLTLSCHATGFYPRDI---EVTWLRDGEDSVDD--V---ESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEH   81 (93)
T ss_pred             CCcEEEEEEEEEEeCCCc---EEEEEECCEECccc--c---cccceEECCCCeEEEEEEEEECCCCCCEEEEEEEe
Confidence            678899999986  4332   689999874 2110  1   011122233332    1334566789999999876

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=80.66  E-value=5.8  Score=33.08  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=44.0

Q ss_pred             EeCCeeeeeeeecc--CCCCCCCCeEEEEecccCcee--eEeeccCc-ceEeecCceEEeeecCCCCeE-EEEEeCC---
Q psy10772        285 TWGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRY--QIKFRSDK-FIRTVDGGLVIMAVEELDAGK-YDCWLGN---  355 (378)
Q Consensus       285 ~~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~--~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~-Y~C~~~~---  355 (378)
                      ..|+.+.|.|....  |..   ..|+|+.|+.+....  .+....++ .+..  ..-|-......|.|. |.|....   
T Consensus        19 ~~g~~~tL~C~a~gF~P~~---i~v~W~kng~~~~~~~~~~~p~~d~~ty~~--~S~L~~~~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRD---ITVKWLKNGNELSAEQPNITPEGDSVSYNV--TSTVQVKLTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCC---CEEEEEECCEECcccccceeeCCCCCcEEE--EEEEEEECccccccCceEEEEEeCCC
Confidence            45778899998875  332   378999998651110  11111111 1111  112333456667664 9997654   


Q ss_pred             --eeeEEEeeeecccccCCC
Q psy10772        356 --TVLCTHNLTVDAHSNVAD  373 (378)
Q Consensus       356 --~~l~~~~~~v~~~~c~~~  373 (378)
                        .....+.+  -..-|.+|
T Consensus        94 ~~p~~~~~~~--~~~~~~~~  111 (111)
T cd05772          94 QAPLRGTYNL--SQALRVPP  111 (111)
T ss_pred             CCCeEEEEEc--ccEEEcCC
Confidence              34444554  55556655

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
3afc_A	556	Mouse Semaphorin 6a Extracellular Domain Length = 5		3e-47
3okw_A	565	Mouse Semaphorin 6a, Extracellular Domains 1-2 Leng		3e-47
4gz8_A	667	Mouse Semaphorin 3a, Domains Sema-Psi-Ig Length = 6		1e-38
1q47_A	495	Structure Of The Semaphorin 3a Receptor-Binding Mod		2e-38
4gza_G	538	Complex Of Mouse Plexin A2 - Semaphorin 3a - Neurop		2e-38
1olz_A	663	The Ligand-Binding Face Of The Semaphorins Revealed		2e-30
3nvq_A	590	Molecular Mechanism Of Guidance Cue Recognition Len		5e-16
3nvx_A	383	Molecular Mechanism Of Guidance Cue Recognition Len		1e-08
3nvn_A	389	Molecular Mechanism Of Guidance Cue Recognition Len		2e-07

>pdb|3AFC|A Chain A, Mouse Semaphorin 6a Extracellular Domain Length = 556

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 13/196 (6%)
Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY   GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 205 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 264
Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   D+ ++ G D      F+T    + GSA+C++ + DI  
Sbjct: 265 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDV-VLATFSTPYNSIPGSAVCAYDMLDIAN 323
Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ +  S W PV   RVP+PRPG C           +   PD  LNFI++HPL
Sbjct: 324 VFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPL 383
Query: 203 MDEAVAHRDNKPVFYR 218
           MDEAV    N+P F R
Sbjct: 384 MDEAVPSIINRPWFLR 399

>pdb|3OKW|A Chain A, Mouse Semaphorin 6a, Extracellular Domains 1-2 Length = 565

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 13/196 (6%)
Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY   GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 204 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 263
Query: 94  ARLNCSIPGEFPFYFNEIQ---DIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER 150
           ARLNCS+PG+  FYFN +Q   D+ ++ G D      F+T    + GSA+C++ + DI  
Sbjct: 264 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVL-ATFSTPYNSIPGSAVCAYDMLDIAN 322
Query: 151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPL 202
            F G+FKEQ +  S W PV   RVP+PRPG C           +   PD  LNFI++HPL
Sbjct: 323 VFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPL 382
Query: 203 MDEAVAHRDNKPVFYR 218
           MDEAV    N+P F R
Sbjct: 383 MDEAVPSIINRPWFLR 398

>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig Length = 667

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 22/235 (9%)
Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           V+FFFRE A++  + GK+  +R+ ++CK D GG   L   W T+LKARL CS+PG     
Sbjct: 226 VYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGID 285
Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E+QD++ +   D K    YGVFTTS+    GSA+C +S+ D+ R F+G +  +   
Sbjct: 286 THFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGP 345
Query: 163 TSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPV 215
              W+P    RVP PRPG C        + T+ LPD V+ F RSHP M   V   +N+P+
Sbjct: 346 NYQWVP-YQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPI 404
Query: 216 FYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAAT---TTLRTVFVKVRLLQDV 265
             + D+   FT +VVD V  E      +Y V F  T   T L+ V V      D+
Sbjct: 405 MIKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKVVSVPKETWHDL 455

>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module Length = 495

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 22/235 (9%)
Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           V+FFFRE A++  + GK+  +R+ ++CK D GG   L   W T+LKARL CS+PG     
Sbjct: 218 VYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGID 277
Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E+QD++ +   D K    YGVFTTS+    GSA+C +S+ D+ R F+G +  +   
Sbjct: 278 THFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGP 337
Query: 163 TSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPV 215
              W+P    RVP PRPG C        + T+ LPD V+ F RSHP M   V   +N+P+
Sbjct: 338 NYQWVP-YQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPI 396
Query: 216 FYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAAT---TTLRTVFVKVRLLQDV 265
             + D+   FT +VVD V  E      +Y V F  T   T L+ V V      D+
Sbjct: 397 MIKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKVVSVPKETWHDL 447

>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1 Length = 538

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 22/235 (9%)
Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FP 105
           V+FFFRE A++  + GK+  +R+ ++CK D GG   L   W T+LKARL CS+PG     
Sbjct: 226 VYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGID 285
Query: 106 FYFNEIQDIYKVPGDDTK---FYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQATS 162
            +F+E+QD++ +   D K    YGVFTTS+    GSA+C +S+ D+ R F+G +  +   
Sbjct: 286 THFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGP 345
Query: 163 TSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPV 215
              W+P    RVP PRPG C        + T+ LPD V+ F RSHP M   V   +N+P+
Sbjct: 346 NYQWVP-YQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPI 404
Query: 216 FYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAAT---TTLRTVFVKVRLLQDV 265
             + D+   FT +VVD V  E      +Y V F  T   T L+ V V      D+
Sbjct: 405 MIKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKVVSVPKETWHDL 455

>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The High Resolution Crystal Structure Of Sema4d Length = 663

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 28/256 (10%)
Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFY 107
           V+FFF E +VEY    + +  R+ARVCK D GG   L + W ++LKARL CS P +    
Sbjct: 210 VYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRP-DSGLV 268
Query: 108 FNEIQDIY--KVPGDDTK-FYGVFTTSTTGLMGSAICSFSIEDIERAFV-GKFKEQAT-- 161
           FN ++D++  + PG     FY +FT     +  SA+C++++   E  F  GK+ +  T  
Sbjct: 269 FNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVE 328
Query: 162 -STSAWLPVLSSRVPEPRPGQCVNDTE----------TLPDSVLNFIRSHPLMDEAVAHR 210
            S + W+   +  VP+PRPG C+ D+E           LPD  L F++ HPLMD++V   
Sbjct: 329 QSHTKWV-RYNGPVPKPRPGACI-DSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPI 386
Query: 211 DNKPVFYRRDLLFTHLVVDVVQ------YEVFGTTSEYIVYFAATTTLRTVFV--KVRLL 262
           DN+P   ++D+ +T +VVD  Q      Y+V   +++      A +    V +  + +L 
Sbjct: 387 DNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLF 446
Query: 263 QDVSNTSDSICESSVG 278
           QD       +  S  G
Sbjct: 447 QDFEPVQTLLLSSKKG 462

>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition Length = 590

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 20/166 (12%)
Query: 48  VFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILS-QNWATYLKARLNCSIPGEFPF 106
           +++FFRE   +         SRVA++C+ D GG++ LS   W T+LKA L CS       
Sbjct: 196 IYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAATNK- 254
Query: 107 YFNEIQDIYKVPGD-----DTKFYGVFTTSTTGLMGSAICSFSIEDIERAFVGKFKEQAT 161
            FN +QD++ +P       DT+ YGVF+        SA+C +S+ DI++ F         
Sbjct: 255 NFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNY---SAVCVYSLGDIDKVF--------- 302
Query: 162 STSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAV 207
             ++ L    S +P PRPG+C+ D + +P         HP + + V
Sbjct: 303 -RTSSLKGYHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVAQRV 347

>pdb|3NVX|A Chain A, Molecular Mechanism Of Guidance Cue Recognition Length = 383

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 70  VARVCKRDTGGKNILSQN-WATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVF 128
           +A++C  D GG + LS + W+T+LK  L C I G    Y   I        +DT  Y  F
Sbjct: 178 IAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRS--YRQIIHSRTIKTDNDTILYVFF 235
Query: 129 TTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET 188
            +  +    SA+C++S+  I+++F          +++ L   + ++P P PG C+   + 
Sbjct: 236 DSPYSK---SALCTYSMNTIKQSF----------STSKLEGYTKQLPSPAPGICLPAGKV 282
Query: 189 LPDSVLNFIRSHPLMDEAVAHRDNKPVF 216
           +  +    I  + ++D+ +    N+P+F
Sbjct: 283 VSHTTFEVIEKYNVLDDIIKPLSNQPIF 310

>pdb|3NVN|A Chain A, Molecular Mechanism Of Guidance Cue Recognition Length = 389

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 70  VARVCKRDTGGKNILSQN-WATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVF 128
           +A++C  D GG + LS + W+T+LK  L C I G    Y   I        +DT  Y  F
Sbjct: 178 IAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGR--SYRQIIHSKAIKTDNDTILYVFF 235
Query: 129 TTSTTGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTET 188
            +  +    SA+C++S+  I+ +F          +++ L   + ++P P PG C+   + 
Sbjct: 236 DSPYS---KSALCTYSMNAIKHSF----------STSKLGGYTKQLPSPAPGICLPAGKV 282
Query: 189 LPDSVLNFIRSHPLMDEAVAHRDNKPVF 216
           +P +  + I  +  +D+ +    ++P+F
Sbjct: 283 VPHTTFDIIEQYNELDDIIKPL-SQPIF 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
3nvx_A	383	Protein A39; beta-propeller, viral protein; HET: N	4e-62
1q47_A	495	Semaphorin 3A; beta propeller, signaling protein;	1e-55
3oky_B	565	Putative uncharacterized protein; transmembrane, l	1e-54
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	7e-52
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	1e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	1e-45
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	2e-33
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	9e-33
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	1e-32
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	3e-32
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	2e-26
3nvn_B	476	Plexin-C1; beta-propeller, signaling, viral protei	4e-20
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	2e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	5e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-04
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	8e-04

>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A* Length = 383

 Score =  203 bits (516), Expect = 4e-62
 Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 26/244 (10%)

Query: 30  YDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN-W 88
             + L+  FV        V+  F +T              +A++C  D GG + LS + W
Sbjct: 141 PKDGLRGAFVDKDGTYDKVYILFTDTIGSK---RIVKIPYIAQMCLNDEGGPSSLSSHRW 197

Query: 89  ATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDI 148
           +T+LK  L C I G    Y   I        +DT  Y  F +  +    SA+C++S+  I
Sbjct: 198 STFLKVELECDIDGRS--YRQIIHSRTIKTDNDTILYVFFDSPYSK---SALCTYSMNTI 252

Query: 149 ERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVA 208
           +++F     E            + ++P P PG C+   + +  +    I  + ++D+ + 
Sbjct: 253 KQSFSTSKLEG----------YTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIK 302

Query: 209 HRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNT 268
              N+P+F           +   +        EY +YF    ++ +     +  Q  S+ 
Sbjct: 303 PLSNQPIFEGPS-GVKWFDIKEKE----NEHREYRIYFIKENSIYS--FDTKSKQTRSSQ 355

Query: 269 SDSI 272
            D+ 
Sbjct: 356 VDAR 359

>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1 Length = 495

 Score =  189 bits (479), Expect = 1e-55
 Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 27/259 (10%)

Query: 35  QPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN 87
            P F+ ++ I          V+FFFRE A++  + GK+  +R+ ++CK D GG   L   
Sbjct: 198 DPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 257

Query: 88  WATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGDD---TKFYGVFTTSTTGLMGSAICS 142
           W T+LKARL CS+PG      +F+E+QD++ +   D      YGVFTTS+    GSA+C 
Sbjct: 258 WTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCM 317

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLN 195
           +S+ D+ R F+G +  +      W+P    RVP PRPG C        + T+ LPD V+ 
Sbjct: 318 YSMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVIT 376

Query: 196 FIRSHPLMDEAVAHRDNKPVFYRRDLL--FTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
           F RSHP M   V   +N+P+  + D+   FT +VVD V         +Y V F  T    
Sbjct: 377 FARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVD----AEDGQYDVMFIGTDV-G 431

Query: 254 TVFVKVRLLQDVSNTSDSI 272
           TV   V + ++  +  + +
Sbjct: 432 TVLKVVSVPKETWHDLEEV 450

>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A* Length = 565

 Score =  188 bits (477), Expect = 1e-54
 Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 13/228 (5%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGG-KNILSQNWATYLK 93
           +P FV + D G Y++FFFRE AVEY   GK VF RVA+VCK D GG + +L + W ++LK
Sbjct: 204 EPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLK 263

Query: 94  ARLNCSIPGEFPFYFNEIQDIYKVPGD--DTKFYGVFTTSTTGLMGSAICSFSIEDIERA 151
           ARLNCS+PG+  FYFN +Q +  V            F+T    + GSA+C++ + DI   
Sbjct: 264 ARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANV 323

Query: 152 FVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPLM 203
           F G+FKEQ +  S W PV   RVP+PRPG C           +   PD  LNFI++HPLM
Sbjct: 324 FTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLM 383

Query: 204 DEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
           DEAV    N+P F R  + +    + V      G    + V F  +  
Sbjct: 384 DEAVPSIINRPWFLRTMVRYRLTKIAV--DNAAGPYQNHTVVFLGSEK 429

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score =  182 bits (461), Expect = 7e-52
 Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 26/223 (11%)

Query: 35  QPDFVGSYDI----------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNIL 84
           +P FV +  I             V+FFF E +VEY    + +  R+ARVCK D GG   L
Sbjct: 187 EPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTL 246

Query: 85  SQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVP---GDDTKFYGVFTTSTTGLMGSAIC 141
            + W ++LKARL CS P      FN ++D++ +         FY +FT     +  SA+C
Sbjct: 247 QKKWTSFLKARLICSRPDS-GLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVC 305

Query: 142 SFSIEDIERAFV-GKFKEQATSTSAWLPVL--SSRVPEPRPGQCVND---------TETL 189
           ++++   E  F  GK+ +  T   +    +  +  VP+PRPG C++          +  L
Sbjct: 306 AYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNL 365

Query: 190 PDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
           PD  L F++ HPLMD++V   DN+P   ++D+ +T +VVD  Q
Sbjct: 366 PDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQ 408

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 9/85 (10%)

Query: 268 TSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK 327
            S    +S     +     G +  L C            + W   +       +K  S K
Sbjct: 529 ASVCPDKSKGSYRQHFFKHGGTAELKC----SQKSNLARVFWKFQNGV-----LKAESPK 579

Query: 328 FIRTVDGGLVIMAVEELDAGKYDCW 352
           +       L+I  + E D+G Y C 
Sbjct: 580 YGLMGRKNLLIFNLSEGDSGVYQCL 604

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score =  164 bits (414), Expect = 1e-45
 Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 36  PDFVGSYDI------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILS-QNW 88
           P F+ +  +         +++FFRE   +         SRVA++C+ D GG++ LS   W
Sbjct: 178 PQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKW 237

Query: 89  ATYLKARLNCSIPGEFPFYFNEIQDIYKVPG--DDTKFYGVFTTSTTGLMGSAICSFSIE 146
            T+LKA L CS        FN +QD++ +P      +   V+   +     SA+C +S+ 
Sbjct: 238 NTFLKAMLVCSDAAT-NKNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNYSAVCVYSLG 296

Query: 147 DIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEA 206
           DI++ F           ++ L    S +P PRPG+C+ D + +P         HP + + 
Sbjct: 297 DIDKVF----------RTSSLKGYHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVAQR 346

Query: 207 VAHRDNKPVF-YRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
           V          +     +  + V  +Q     T   + V +  T     
Sbjct: 347 VEPMGPLKTPLFHSKYHYQKVAVHRMQASHGET---FHVLYLTTDRGTI 392

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Length = 528

 Score =  129 bits (324), Expect = 2e-33
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 24/211 (11%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKA 94
              FV ++  G   +F F    ++     ++  + V+RVC RD        Q++ +Y++ 
Sbjct: 199 SHHFVSAFARGASAYFLFLRRDLQAQ--SRAFRAYVSRVCLRD--------QHYYSYVEL 248

Query: 95  RLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMG------------SAICS 142
            L C     +           +        +  F+++    +G            SA+C+
Sbjct: 249 PLACEGG-RYGLIQAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCA 307

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVL-SSRVPEPRPGQCVNDTETLPDSVLNFIRSHP 201
           F +++++R          T           + +       C        D+        P
Sbjct: 308 FPLDEVDRLANRTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTP 367

Query: 202 LMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
               +    +  P+     +  T + V +  
Sbjct: 368 SPMASRVPLEATPILEWPGIQLTAVAVTMED 398

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* Length = 539

 Score =  127 bits (320), Expect = 9e-33
 Identities = 38/294 (12%), Positives = 79/294 (26%), Gaps = 46/294 (15%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEY----INCGKSVF-SRVARVCKRDTGGKNILSQNWAT 90
             ++  +  G +V+F   +          + G   + SR+ R+CK D          + +
Sbjct: 211 IFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDD--------PKFHS 262

Query: 91  YLKARLNCSIPGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGLMG- 137
           Y+     C+  G     +  +Q  Y             +  D+   + +F+         
Sbjct: 263 YVSLPFGCTRAG---VEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHP 319

Query: 138 ---SAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVL 194
              SA+C+F I  I      + +                    +  QC      + D+  
Sbjct: 320 PDDSALCAFPIRAINLQIKERLQSCYHGEGNL----ELNWLLGKDVQCTKAPVPIDDNFC 375

Query: 195 NFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRT 254
               + PL            ++       T +   V           Y V F  T + + 
Sbjct: 376 GLDINQPLGGSTPVEG--LTLYTTSRDRLTSVASYVYN--------GYSVVFVGTKSGKL 425

Query: 255 VFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMS 308
             ++           + +     G             L  +V     +   P+ 
Sbjct: 426 KKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 479

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} Length = 527

 Score =  127 bits (319), Expect = 1e-32
 Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 34/221 (15%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
            ++V S+  G +V+F   + A    +   ++ +R+AR+   +             Y +  
Sbjct: 206 IEYVHSFHTGAFVYFLTVQPASVT-DDPSALHTRLARLSATEPE--------LGDYRELV 256

Query: 96  LNCSIP--------GEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGL 135
           L+C            E    +  +Q  +             +       +GVF T   G 
Sbjct: 257 LDCRFAPKLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEVLFGVFVTGKDGG 316

Query: 136 MG----SAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPD 191
            G    S +C+F I+ ++       +    S      +         P  C N       
Sbjct: 317 PGVGPNSVVCAFPIDLLDTLIDEGVERCCESPVHP-GLRRGLDFFQSPSFCPNPPGLEAL 375

Query: 192 SVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQ 232
           S     R  PL+  +   R +        +  T L V  + 
Sbjct: 376 SPNTSCRHFPLLVSSSFSRVDLFNGLLGPVQVTALYVTRLD 416

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* Length = 681

 Score =  127 bits (318), Expect = 3e-32
 Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 46/295 (15%)

Query: 35  QPDFVGSYDIGKYVFFFFRETAVE----YINCGKSVF-SRVARVCKRDTGGKNILSQNWA 89
              ++  +  G +V+F   +          + G   + SR+ R+CK D          + 
Sbjct: 209 DIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDD--------PKFH 260

Query: 90  TYLKARLNCSIPGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTTSTTGLM- 136
           +Y+     C+  G     +  +Q  Y             +  D+   + +F+        
Sbjct: 261 SYVSLPFGCTRAG---VEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHH 317

Query: 137 ---GSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSV 193
               SA+C+F I  I      + +                    +  QC      + D+ 
Sbjct: 318 PPDDSALCAFPIRAINLQIKERLQSCYHGEGNL----ELNWLLGKDVQCTKAPVPIDDNF 373

Query: 194 LNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLR 253
                + PL            ++       T +   V           Y V F  T + +
Sbjct: 374 CGLDINQPLGGSTPVEG--LTLYTTSRDRLTSVASYVYN--------GYSVVFVGTKSGK 423

Query: 254 TVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMS 308
              ++           + +     G             L  +V     +   P+ 
Sbjct: 424 LKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 478

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A Length = 727

 Score =  109 bits (273), Expect = 2e-26
 Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 47/238 (19%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
             +V +++   +++F   +         ++  +R+ R C  +            +Y++  
Sbjct: 226 IKYVHAFESNNFIYFLTVQRETL---DAQTFHTRIIRFCSIN--------SGLHSYMEMP 274

Query: 96  LNCSI------PGEFPFYFNEIQDIY------------KVPGDDTKFYGVFTT----STT 133
           L C +             FN +Q  Y                +D   + VF      S  
Sbjct: 275 LECILTEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAE 334

Query: 134 GLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSV 193
            +  SA+C+F I+ +   F     +                  P    C N T  L +S 
Sbjct: 335 PMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYG-------PNHEHCFNRT-LLRNSS 386

Query: 194 LNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
               R      E         +F  +        +            +  +    T+ 
Sbjct: 387 GCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTF------IKGDLTIANLGTSE 438

>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* Length = 476

 Score = 90.8 bits (224), Expect = 4e-20
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 20/123 (16%)

Query: 36  PDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKAR 95
             FV ++     ++F +      Y +   + +  +AR+ +                 +A 
Sbjct: 198 LHFVDAFLWNGSIYFPYYP--YNYTSGAATGWPSMARIAQST---------EVLFQGQAS 246

Query: 96  LNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVF------TTSTTGLMGSAICSFSIEDIE 149
           L+C      P     +     V   D  + GVF               +A+C F + +I+
Sbjct: 247 LDCGHGH--PDGRRLLLSSSLVEALDV-WAGVFSAAAGEGQERRSPTTTALCLFRMSEIQ 303

Query: 150 RAF 152
              
Sbjct: 304 ARA 306

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
           Q V  G+ V L C +    S A  P+ W      K R  I+ +S K+    +G    LVI
Sbjct: 18  QWVAPGEDVELRCEL----SRAGTPVHWL-----KDRKAIR-KSQKYDVVCEGTMAMLVI 67

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
                 DAG+Y C +      T +L V+ 
Sbjct: 68  RGASLKDAGEYTCEVEA-SKSTASLHVEE 95

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
           +  + G +  L C +   A     P+ W      KG   ++    ++    DG    L I
Sbjct: 18  KEASEGATATLQCELSKVA-----PVEWK-----KGPETLR-DGGRYSLKQDGTRCELQI 66

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
             +   DAG+Y C  G     +  LTV A
Sbjct: 67  HDLSVADAGEYSCMCGQER-TSATLTVRA 94

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 277 VGRLK-QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG 335
             RLK   V  G+S    C   L    A+ P  W       G   +   S +F  T  G 
Sbjct: 12  TKRLKTMEVLEGESCSFEC--VLSHESASDPAMWT-----VGGKTVGS-SSRFQATRQGR 63

Query: 336 ---LVIMAVEELDAGKYDCWLGNTVLCTHNLTV 365
              LV+      DAG+    +        +L V
Sbjct: 64  KYILVVREAAPSDAGEVVFSVRGLT-SKASLIV 95

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH------YSKDKGRYQIKFRSDKFIRTVDGG 335
             VT G S+  S  V   + +    + W+        SK     Q+    D+  +     
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVD 366
           L I   +    G Y C +           NLTV 
Sbjct: 74  LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYH------YSKDKGRYQIKFRSDKFIRTVD 333
            TV  G+ +     VK     +  +P   W+        SK     Q+K   ++  R   
Sbjct: 17  GTVKVGEDITFIAKVKAED--LLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74

Query: 334 GGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
             + I+  ++  AG Y C +        C+ +L V   +
Sbjct: 75  FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-----YSKDKGRYQIKFRSDKFIRTVDGGL 336
            T   G+ V L C V    +     + W+          K RY+I+   +         L
Sbjct: 17  TTAYCGERVELECEVSEDDA----NVKWFKNGEEIIPGPKSRYRIR--VEGKKHI----L 66

Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHS 369
           +I    + DA +Y          +  L+VD  S
Sbjct: 67  IIEGATKADAAEYSVMTTGGQ-SSAKLSVDLKS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
             V  G +  L C +    S    P+ W       G   ++   DK+    +G    LV+
Sbjct: 18  LEVLEGGAATLRCVL----SSVAAPVKWC-----YGNNVLR-PGDKYSLRQEGAMLELVV 67

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
             +   D+G+Y C  G+    +  LTV A
Sbjct: 68  RNLRPQDSGRYSCSFGDQT-TSATLTVTA 95

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
           +  T G +  L C +   A     P+ W+     KG   ++   D+     DG    L I
Sbjct: 29  EEATEGATAVLRCELSKMA-----PVEWW-----KGHETLR-DGDRHSLRQDGARCELQI 77

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
             +   DAG+Y C  G     +  LTV A
Sbjct: 78  RGLVAEDAGEYLCMCGKER-TSAMLTVRA 105

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
                G S  LSC V    +     ++WY     K   ++   S K      G    LV+
Sbjct: 21  VQAEAGASATLSCEVAQAQT----EVTWY-----KDGKKLS-SSSKVRVEAVGCTRRLVV 70

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
               + +AG+Y C  G     +  L V  
Sbjct: 71  QQAGQAEAGEYSCEAGGQQ-LSFRLQVAG 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
             V+ G  + L+  +    +     + W      K   +I+    K+I    G    L I
Sbjct: 26  YQVSKGHKIRLTVELADHDA----EVKWL-----KNGQEIQMSGSKYIFESIGAKRTLTI 76

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
                 D   Y C +G    C+  L V
Sbjct: 77  SQCSLADDAAYQCVVGGEK-CSTELFV 102

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
              V  G  V     +  P       + WY     K   +I+  S K+I    G    L 
Sbjct: 17  AYQVDKGGRVRFVVELADPKL----EVKWY-----KNGQEIRP-STKYIFEHKGCQRILF 66

Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
           I   +  D  +Y    G+   C+  L V +
Sbjct: 67  INNCQMTDDSEYYVTAGDEK-CSTELFVRS 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
             V    +   +C  + PA+     ++W      KG  +++  S K   + +G    L I
Sbjct: 18  LQVEEKGTAVFTCKTEHPAA----TVTWR-----KGLLELR-ASGKHQPSQEGLTLRLTI 67

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
            A+E+ D+  Y C +G        L V  
Sbjct: 68  SALEKADSDTYTCDIGQAQ-SRAQLLVQG 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
                 + V L+C +  P +     + W      K   ++   S   +   +     LV+
Sbjct: 23  VAAVRLERVVLTCELCRPWA----EVRWT-----KDGEEVV-ESPALLLQKEDTVRRLVL 72

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
            AV+  D+G+Y C + +    +  +TV  
Sbjct: 73  PAVQLEDSGEYLCEIDDES-ASFTVTVTE 100

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 14/87 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
             V  G         +         + W      +G   I   S+K+    +G    L +
Sbjct: 18  VEVAAGSPAVFEAETERA----GVKVRWQ-----RGGSDISA-SNKYGLATEGTRHTLTV 67

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
             V   D G Y    G++     +L V
Sbjct: 68  REVGPADQGSYAVIAGSSK-VKFDLKV 93

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
            T T  + V L+C +    S  + P +WY     K   +++  S+  +  +DG    L++
Sbjct: 20  LTFTTSERVVLTCEL----SRVDFPATWY-----KDGQKVE-ESELLVVKMDGRKHRLIL 69

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
              +  D+G+++C           +TV
Sbjct: 70  PEAKVQDSGEFECRTEGVS-AFFGVTV 95

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 266 SNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIKFR 324
           +  + S         ++    G+ V L C        A+  P     + K+     +   
Sbjct: 12  TGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE 71

Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
            +  +   DG L ++   + D+G Y C   N       +  L V
Sbjct: 72  EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 9/109 (8%)

Query: 273 CESSVGRLKQTVTWGQSVHLSC-FVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIR 330
                    Q +T   S  L C  +           + WY     K    +   ++KF+ 
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY-----KDSLLLDKDNEKFLS 175

Query: 331 TVDGG-LVIMAVEELDAGKYDCWLGNTVL-CTHNLTVDAHSNVADAPTR 377
                 L++  V   DAG Y C L        +N+T      +      
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 53/358 (14%), Positives = 103/358 (28%), Gaps = 88/358 (24%)

Query: 28  HRYDNCL---QPDFVGSYDIGKYVFFFFRE----TAVEYINCGKSVFSRVARV--CKRDT 78
           ++Y + L   +  FV ++D  K V    +       +++I   K   S   R+       
Sbjct: 16  YQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 79  GGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGS 138
             + ++ +     L+          + F  + I+   + P   T+ Y          + +
Sbjct: 75  Q-EEMVQKFVEEVLRI--------NYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYN 121

Query: 139 AICSFSIEDIERA-FVGKFKEQATSTS---------------AWL--PVLSSRVPEPRP- 179
               F+  ++ R     K ++                      W+   V  S   + +  
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 180 --------GQCVNDTETLPDSVLNFI-RSHPLMDEAVAHRDNKPV------FYRRDLLFT 224
                     C N  ET+ + +   + +  P       H  N  +         R LL +
Sbjct: 182 FKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 225 H------LVVDVVQY----EVFGTTSEYIVYFAATTTLRTVF-------VKVRLLQDVSN 267
                  LV+  VQ       F  + + ++    TT  + V             L   S 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 268 T-----SDSIC----ESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK 316
           T       S+     +     L + V       LS   +          +W H + DK
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYH-----YSKDKGRYQIKFRSDKFIRTVDGGL 336
           Q V  G  V ++  V    +     + W         +D  + + +F+ D         L
Sbjct: 18  QQVFVGDRVEMAVEVSEEGA----QVMWMKNGVELTREDSFKARYRFKKDGKRHI----L 69

Query: 337 VIMAVEELDAGKYDCWLGNTVLCTHNLTVD 366
           +   V + D G+Y         C   L V+
Sbjct: 70  IFSDVVQEDRGRYQVITNGGQ-CEAELIVE 98

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
                G+   L C V     P+       +W      +G   I+ RS K+       L+I
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPS------FTWL-----RGEEVIQLRSKKYSLLGGSNLLI 279

Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
             V + D+G Y C +      +  +  LTV
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTV 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            T   G +V L C V         PM   H+ K++          + +    G L I  +
Sbjct: 131 ITAFMGDTVLLKCEV------IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
           +  D+G Y C   N    +     +A   +   P  
Sbjct: 185 QPGDSGVYRCSARNPA--STRTGNEAEVRILSDPGL 218

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  G  + L C ++       Q ++W    +D  +           R     + +   
Sbjct: 13  FLVHPGDLLQLRCRLRDDV----QSINWL---RDGVQ----LAESNRTRITGEEVEVQDS 61

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
              D+G Y C   +      + T     NV+DA 
Sbjct: 62  VPADSGLYACVTSSPS---GSDTTYFSVNVSDAL 92

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
           Q    G+   + C        +  P   W H    KGR  I  +  +FI   +  L I  
Sbjct: 110 QEFKEGEDAVIVC----DVVSSLPPTIIWKH----KGRDVILKKDVRFIVLSNNYLQIRG 161

Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
           +++ D G Y C         +   ++ V
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQV 189

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
           + +  G +V ++C     A     P   W      K + ++   S+      DG L I  
Sbjct: 120 RVIEVGHTVLMTC----KAIGNPTPNIYWI-----KNQTKVDM-SNPRYSLKDGFLQIEN 169

Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTVDA 367
             E D GKY+C     +G       NL V  
Sbjct: 170 SREEDQGKYECVAENSMGTEHSKATNLYVKV 200

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 14/87 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
             V  G++ H    +  P         W           +   S       DG    L++
Sbjct: 15  VEVFVGETAHFEIELSEPDV----HGQWK-----LKGQPLAA-SPDCEIIEDGKKHILIL 64

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTV 365
              +    G+      NT     NL V
Sbjct: 65  HNCQLGMTGEVSFQAANTK-SAANLKV 90

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 265 VSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQP---MSWYHYSKDKGRYQI 321
                 ++C ++    KQ +       L C         N     + WY          +
Sbjct: 96  FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-----DCKPL 150

Query: 322 KFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357
               +     V   L++M V E   G Y C    T 
Sbjct: 151 LL-DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY 185

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDA 346
            +     C +    +     ++WY   KD  +  +       I      L  +  +  D+
Sbjct: 20  NEIDVRPCPL--NPNEHKGTITWY---KDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74

Query: 347 GKYDCWLGNTVLCTH---NLTV 365
           G Y C + N+  C     +   
Sbjct: 75  GHYYCVVRNSSYCLRIKISAKF 96

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 18/96 (18%)

Query: 279 RLKQTVTWGQSVHLSCFVKLPASMANQPM----SWYHYSKDKGRYQIKFRSDKFIRTVDG 334
            L   VT   +V L C V      AN        WY     K   +I        +    
Sbjct: 123 YLSWEVTGECNVLLKCKV------ANIKKETHIVWY-----KDEREISVDEKHDFKDGIC 171

Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
            L+I    + DAG Y+  L +          L  +A
Sbjct: 172 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYH-------YSKDKGRYQIKFRSDKFIRTVDGG 335
           +   G S+ L C +    +   Q ++W          + D G +      D+       G
Sbjct: 14  SAEKGGSIILQCHLSSTTAQVTQ-VNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72

Query: 336 LVIMAVEELDAGKYDC 351
           L + ++   D G+Y C
Sbjct: 73  LTLQSLTVNDTGEYFC 88

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
           K     G++  + C     A+ A             K    +              L + 
Sbjct: 195 KLVRIRGEAAQIVC----SATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLN 250

Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
           AV+  DAG Y C   N   T   T N  V
Sbjct: 251 AVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            T   G SV L+C    P    N  + W       G +  +         +   L++ +V
Sbjct: 16  LTSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGSHPSR------WAGMGRRLLLRSV 67

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDA 367
           +  D+G Y C+       T +L VD 
Sbjct: 68  QLHDSGNYSCYRAGRPAGTVHLLVDV 93

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 15/99 (15%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
           QTV    +  LSC     P      P   W      K    +  +  +  +  +G L I 
Sbjct: 18  QTVAVDGTFVLSCVATGSP-----VPTILWR-----KDGVLVSTQDSRIKQLENGVLQIR 67

Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAP 375
             +  D G+Y C           +  + V         P
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWY------HYSKDKGRYQIKFRSDKFIRTVDGG 335
            +V  G+   +   V          + W+        SK   R+  K   +         
Sbjct: 22  VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           L I  V   D G Y   +        C  N+ V+A
Sbjct: 82  LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP--MSWYH-----YSKDKGRYQIKFRSDKFIRTVDG 334
            +VT G    L+C         + P   SW+       + D  + +    S   I    G
Sbjct: 114 SSVTIGNRAVLTCS----EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG 169

Query: 335 GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
            L+   V   D+G+Y C   N   T + +    +DA
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 17/97 (17%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKG---------RYQIKFRSDKFIRT 331
           QT   G  V   C          QP + W  + +  G            +          
Sbjct: 124 QTAVLGSDVEFHC----KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179

Query: 332 VDGGLVIMAVEELDAGKYDCWLGNTV---LCTHNLTV 365
            D  L +  V E D G+Y C   N +        L+V
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 22/134 (16%)

Query: 253 RTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY 312
           R   ++   LQ+ S                 +T G  V  +C    P      P   Y +
Sbjct: 91  REASLRFGFLQEFSAEERD---------PVKITEGWGVMFTCSP--PPH---YPALSYRW 136

Query: 313 SKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHN--------LT 364
             ++    I     +F+    G L I   E  D G Y C+  + +             L+
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196

Query: 365 VDAHSNVADAPTRL 378
           + A      AP+  
Sbjct: 197 LAAEDARQYAPSIK 210

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 243 IVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM 302
                 T   R    K RL+     +S +    ++ +    +    ++ L C  +     
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ----- 237

Query: 303 ANQP--MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357
                   WY + +   R Q    +D+ ++ V G L+I      D+GKY C + N     
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296

Query: 358 LCTHNLTVDA 367
                LTV A
Sbjct: 297 SVETVLTVTA 306

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-GRYQIKFRSDKFIRTVDGGLVIMA 340
           + V  G S  + C +  P+ +A+       ++ ++   +       K++    G L I  
Sbjct: 113 EHVIRGNSAVIKCLI--PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170

Query: 341 VEELDA-GKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
           V   D    Y C   + +     L+      V   P 
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 207

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 18/94 (19%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
           Q+V  GQ V +S  V+  P     +P+ SW      + R  ++    +F    +GG   L
Sbjct: 15  QSVREGQDVIMSIRVQGEP-----KPVVSWL-----RNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
            I+A E  DAG Y C   N      C   L V  
Sbjct: 65  RILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
            +    G    + C               +W     D        +    IR  +G L +
Sbjct: 723 DKAFAQGSDAKVECKAD-----GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHV 777

Query: 339 MAVEELDAGKYDCW----LGNTVLCTHNLTVDAH 368
             +++ + G Y C     +G+ +     ++V AH
Sbjct: 778 DNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
           +T +   ++ L C  +  P  +      WY + +   R Q    +D+ ++ V G L+I  
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPV----FRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIKD 312

Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTVDA 367
               D+GKY C + N          LTV A
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTA 342

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 19/98 (19%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
           QTV  G+ + L C +       N P  W      K    ++  SD+      G    LVI
Sbjct: 17  QTVNLGKEICLKCEIS-----ENIPGKWT-----KNGLPVQE-SDRLKVVQKGRIHKLVI 65

Query: 339 MAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
                 D G Y            N+T+ A  +V   P+
Sbjct: 66  ANALTEDEGDYVFAPDAY-----NVTLPAKVHVISGPS 98

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYH--------YSKDKGRYQIKFRSDKFIRTV 332
            +   G  V   C          QP + W          Y  D   Y    +      + 
Sbjct: 128 ASTVVGGDVEFVC----KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 333 DGGLVIMAVEELDAGKYDCWLGNT---VLCTHNLTV 365
              L +  V E DAG+Y C + N       +  LTV
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYH-----YSKDKGRYQIKFRSDKFIRTVDGG 335
            T   G +  L C +         P + W          D  + Q+    D+    +   
Sbjct: 12  ITGARGLTGTLRCQL---QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS 68

Query: 336 -LVIMAVEELDAGKYDCW----LGNTVLCTHNLTV 365
            L I +++  D G+Y C         V     + +
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 17/130 (13%)

Query: 243 IVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVK-LPAS 301
            V   + T          +      T     +  V         GQ+V L CF    P  
Sbjct: 84  FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP-- 141

Query: 302 MANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV 357
               P + W    K          S   I T    L I  ++  D G Y+C   N     
Sbjct: 142 ---VPDIRWR---KVLE----PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD 191

Query: 358 LCTHNLTVDA 367
                + V A
Sbjct: 192 KHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  G+ + L C               Y +  ++    I     +F+   +G L I  V
Sbjct: 18  VRVKEGKGMVLLC----DPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANV 73

Query: 342 EELDAGKYDCWLGNTV 357
           E  D G Y C++ +  
Sbjct: 74  EASDKGNYSCFVSSPS 89

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYH--YSKDKGRYQIKFRSDKFIRTVDGGLVI 338
             V  G++  L C    P     +P   W       D  +      S +      G L+I
Sbjct: 118 TRVAKGETALLEC---GPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174

Query: 339 MAVEELDAGKYDCWLGNTV 357
             VE +D G Y C   N V
Sbjct: 175 SNVEPIDEGNYKCIAQNLV 193

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 282 QTVTWGQSVHLSCFVKL--PASMANQPMSWYH----YSKDKGRYQIKFRSDKFIRTVDGG 335
            + T G    L+C  +   P S      +W+        +    +    S   +    G 
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSE----YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGE 172

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           LV   +   D G+Y C   N   T + ++ + ++A
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
            T   G+ +  SC     AS + +P +SW+     +    I+      ++  +  L +  
Sbjct: 108 ATAERGEEMTFSC----RASGSPEPAISWF-----RNGKLIEENEKYILKGSNTELTVRN 158

Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
           +   D G Y C   N          L V
Sbjct: 159 IINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 11/72 (15%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
           Q    G+   + C V   P      P  SW +              ++F    +  L I+
Sbjct: 12  QEFKQGEDAEVVCRVSSSP-----APAVSWLY----HNEEVTTISDNRFAMLANNNLQIL 62

Query: 340 AVEELDAGKYDC 351
            + + D G Y C
Sbjct: 63  NINKSDEGIYRC 74

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 14/90 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGLV 337
             V  G S    C +    S AN   + W+            +I  +   +       L 
Sbjct: 23  VDVQEGSSATFRCRI----SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV-----LT 73

Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDA 367
           +  +   D+G      G+    +  L V  
Sbjct: 74  LRQLALKDSGTIYFEAGDQR-ASAALRVTE 102

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             +    +  L+C         + P+ W   S++  +   K +   F       L +  +
Sbjct: 10  LVLNVSSTFVLTCS-------GSAPVVWERMSQEPPQEMAKAQDGTFSSV----LTLTNL 58

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAP 375
             LD G+Y C   ++     +     +  V D  
Sbjct: 59  TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPT 92

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP--MSWYHYSKDKGR--YQIKFRSDKFIRTVDGGL 336
           +  V  G+++ L C V       N+     W +  K+ GR    +          +   L
Sbjct: 190 QTVVRQGENITLMCIVI-----GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSIL 244

Query: 337 VIMAVEELDAGKYDCWLGNTV 357
            I + E  D+G Y C +  +V
Sbjct: 245 HIPSAELEDSGTYTCNVTESV 265

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LV 337
           L   VT   +V L C V       +  + WY   KD+    +  +        DG   L+
Sbjct: 14  LSWEVTGECNVLLKCKVANIKKETH--IVWY---KDEREISVDEK----HDFKDGICTLL 64

Query: 338 IMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTR 377
           I    + DAG Y+  L +          L  +A   +     +
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK 107

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 262 LQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI 321
           L ++ +     C             G ++ + C  K           W   S       +
Sbjct: 237 LHNIFSLDFFNCSEYKES-AWEAHLGDTLTIRCDTKQQ----GMTKVWVSPS---NEQVL 288

Query: 322 KFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPTR 377
              S+  +   +G L    V+  D G Y C+         N T+     V +    
Sbjct: 289 SQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF---NETLSVELKVYNFTLH 341

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVE 342
               G +V LSC           PM    + KD           + +      L ++   
Sbjct: 19  VFGSGDAVELSCPPP-----GGGPMGPTVWVKDGTG----LVPSERVLVGPQRLQVLNAS 69

Query: 343 ELDAGKYDCWLGNTVLCTHNLTV 365
             D+G Y C    T     + +V
Sbjct: 70  HEDSGAYSCRQRLTQRVLCHFSV 92

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 18/98 (18%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG----- 335
           QT   G  V   C          QP + W  + +  G       +         G     
Sbjct: 232 QTAVLGSDVEFHC----KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287

Query: 336 -----LVIMAVEELDAGKYDCWLGNT---VLCTHNLTV 365
                L +  V   DAG+Y C  GN+      +  L V
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
           QT+    +  L C     P      P +SW      K  +    R  +      G L I 
Sbjct: 18  QTLAVDGTALLKCKATGDP-----LPVISWL-----KEGFTFPGRDPRATIQEQGTLQIK 67

Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
            +   D G Y C   +       +  L V
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDV 96

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 15/77 (19%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            +V    SV L C  +   S  +    W+H             ++  I +      I A 
Sbjct: 17  YSVLEKDSVTLKC--QGAYSPEDNSTQWFH-------------NESLISSQASSYFIDAA 61

Query: 342 EELDAGKYDCWLGNTVL 358
              D+G+Y C    + L
Sbjct: 62  TVNDSGEYRCQTNLSTL 78

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 23/96 (23%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYH------YSKDKGRYQIKFRSDKFIRTVD 333
           + V   ++  + C     P      P ++W+        S + GR +             
Sbjct: 118 KVVERTRTATMLCAASGNP-----DPEITWFKDFLPVDTSNNNGRIKQLRSES------I 166

Query: 334 GGLVIMAVEELDAGKYDCW----LGNTVLCTHNLTV 365
           G L I   EE D GKY+C      G       NL V
Sbjct: 167 GALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
                G  V   C ++    S     ++WY      G  Q++  S+K+  T + G   L 
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQ---VTWY-----FGVRQLE-NSEKYEITYEDGVAILY 61

Query: 338 IMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
           +  + +LD G Y C + N          L V    
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
             V  G+   + C    P     +P  SW      K    +    D+ I    G L+I  
Sbjct: 121 VMVAVGEPAVMEC---QPPRGHPEPTISWK-----KDGSPLDD-KDERITIRGGKLMITY 171

Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTV 365
             + DAGKY C     +G        LTV
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTV 200

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 15/77 (19%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V    SV L C  +   S  +Q   W+H             ++  I +      I A 
Sbjct: 17  YRVLEKDSVTLKC--QGAYSPEDQSTQWFH-------------NESLISSQASSYFIDAA 61

Query: 342 EELDAGKYDCWLGNTVL 358
              D+G+Y C    + L
Sbjct: 62  TVDDSGEYRCQTQLSTL 78

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
           + V  G SV L C +  +P      P + W      +    ++F +D+     D      
Sbjct: 25  KKVLEGDSVKLECQISAIP-----PPKLFWK-----RNNEMVQFNTDRISLYQDNTGRVT 74

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           L+I  V + DAG Y     N      C   L V A
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 19/92 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
            TV  G  V L   V  +P      P + +Y           +QI    D +       L
Sbjct: 113 MTVRQGSQVRLQVRVTGIP-----TPVVKFYRDGAEIQSSLDFQISQEGDLYS------L 161

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
           +I      D+G Y     N       T  L V
Sbjct: 162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
                G  + L+C      + +   ++ + + K     +                     
Sbjct: 8   TVEDLGSKILLTC----SLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
            +   G+Y C      + T N+ +     V    +
Sbjct: 57  SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKS 91

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
             +  G+S    C V         P+  +W   ++     G Y++    +         L
Sbjct: 15  VDLALGESGTFKCHVT-----GTAPIKITWAKDNREIRPGGNYKMTLVEN------TATL 63

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
            ++ V + DAG+Y C+  N      C+  L V
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 21/95 (22%)

Query: 282 QTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--- 335
                G  VHL C ++            +SW+     K + +++    K+    +     
Sbjct: 202 VETLKGADVHLECELQGTPPFQ------VSWH-----KDKRELR-SGKKYKIMSENFLTS 249

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           + I+ V+  D G+Y C   N   +  C  ++T+ A
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 19/92 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
           Q V  G+SV L   V             +W  + K   +    +++   +         L
Sbjct: 17  QKVRAGESVELFGKVTGTQ-----PITCTWMKFRKQIQESEHMKVENSENGSK------L 65

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
            I+A  +   G Y   + N   +     NLTV
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             +  G  V LSC  KL      +P    ++S   G   ++ R+            I+  
Sbjct: 180 SPLLEGNLVTLSCETKLLLQ---RPGLQLYFSFYMGSKTLRGRNT------SSEYQILTA 230

Query: 342 EELDAGKYDCWLGNTV 357
              D+G Y C      
Sbjct: 231 RREDSGLYWCEAATED 246

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 14/88 (15%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVI 338
            TV   +     C V    S       WY     K   +++  S +   +  G    LVI
Sbjct: 18  LTVKAAEQAVFKCEV----SDEKVTGKWY-----KNGVEVRP-SKRITISHVGRFHKLVI 67

Query: 339 MAVEELDAGKYDCWLGNTVL-CTHNLTV 365
             V   D G Y        L  +  L  
Sbjct: 68  DDVRPEDEGDYTFVPDGYALSLSAKLNF 95

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
            T+  G++++L+C V   P      P +SW    K         +KF + +         
Sbjct: 127 VTIQEGKALNLTCNVWGDPP-----PEVSWLKNEKALAQTDHCNLKFEAGRTAY-----F 176

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
            I  V   D+GKY   + N   +      ++V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 18/100 (18%)

Query: 287 GQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAV 341
            + + L  FV        + +  +W H     G   I++ SD+    V G    L I   
Sbjct: 17  AEGIQLYSFVT----YYVEDLKVNWSH----NGS-AIRY-SDRVKTGVTGEQIWLQINEP 66

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADAPTRL 378
              D GKY   L +       T +L+  A+        RL
Sbjct: 67  TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 24/89 (26%)

Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWY--------------------HYSKDKGRYQIK 322
            V  G++ +L C   LP S    PM W                        +   RYQ+K
Sbjct: 5   KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64

Query: 323 FRSDKFIRTVDGGLVIMAVEELDAGKYDC 351
                 +   D  L+I  V   D G Y C
Sbjct: 65  GD----LNKGDVSLIIKNVTLDDHGTYCC 89

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 14/87 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  G  + L C ++       Q ++W    +D     ++       R     + +   
Sbjct: 19  LLVHPGDLLQLRCRLRDDV----QSINWL---RD----GVQLVESNRTRITGEEVEVRDS 67

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
              D+G Y C   +   +     ++ V
Sbjct: 68  IPADSGLYACVTSSPSGSDTTYFSVNV 94

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 16/99 (16%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
             ++ G+S   +C     P     + + WY+        +    + + +   +G    L 
Sbjct: 14  VELSVGESKFFTCTAIGEP-----ESIDWYN--PQG---EKIISTQRVVVQKEGVRSRLT 63

Query: 338 IMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNVADAPT 376
           I      DAG Y C   +               +    T
Sbjct: 64  IYNANIEDAGIYRCQATDAK--GQTQEATVVLEIYQKLT 100

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
            T   G+ +  SC     AS + +P +SW+     +    I+      ++  +  L +  
Sbjct: 204 ATAERGEEMTFSC----RASGSPEPAISWF-----RNGKLIEENEKYILKGSNTELTVRN 254

Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
           +   D G Y C   N          L V
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQV 282

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 19/92 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKD---KGRYQIKFRSDKFIRTVDGGL 336
            TV  G+S   SC     P      P ++W    +      R+Q+               
Sbjct: 24  MTVYEGESARFSCDTDGEP-----VPTVTWLRKGQVLSTSARHQVTTTKY------KSTF 72

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
            I +V+  D G Y   + N          LT+
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 14/89 (15%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM 339
             +  G+   L C     P     +P + W       G        +         ++  
Sbjct: 322 LILAPGEDGRLVCRANGNP-----KPTVQWMV----NGEPLQSAPPNPNREVAGDTIIFR 372

Query: 340 AVEELDAGKYDCWLGN---TVLCTHNLTV 365
             +      Y C   N    +L    ++V
Sbjct: 373 DTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 243 IVYFAATTTLRT---VFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVK-L 298
              F  T T++      +KV   + V+  + S          Q V  G  + L C    +
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249

Query: 299 PASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-- 355
           P      P ++WY   K  G               +  L I  V E D+G+Y C   N  
Sbjct: 250 PT-----PDIAWY---KKGGDLP---SDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298

Query: 356 -TVLCTHNLTVDA 367
            ++  T ++ V A
Sbjct: 299 GSIRHTISVRVKA 311

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 15/149 (10%)

Query: 226 LVVDVVQYEVFGTTSEY--IVYFAATTTLRT-VFVKVRLLQDVSNTSDSICESSVGRLKQ 282
           L   +V  E      +Y      AA       V  +++ +   ++               
Sbjct: 163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222

Query: 283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR--YQIKFRSDKFIRTVDGGLVIMA 340
               G    + C        +N PM + +Y K+        + R  +  RT    L+   
Sbjct: 223 MAKAGDVTMIYCMYG-----SN-PMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 341 VEELDAGKYDCW----LGNTVLCTHNLTV 365
               D G Y C     +G     +  LTV
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 22/93 (23%)

Query: 281 KQTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK--DKGRYQIKFRSDKFIRTVDGGL 336
              V  GQ V + C V  LP      P + W H +K    GR  +           D GL
Sbjct: 318 VIVVKQGQDVTIPCKVTGLP-----APNVVWSHNAKPLSGGRATVT----------DSGL 362

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVD 366
           VI  V+  D G Y C   N          + V+
Sbjct: 363 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 16/105 (15%)

Query: 253 RTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY 312
           R   ++   L++    + S           +V  GQ + L C    P        +W   
Sbjct: 92  REAKLQFAYLENFKTRTRS---------TVSVRRGQGMVLLCGP--PPHSGELSYAWI-- 138

Query: 313 SKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV 357
                 Y     + +F+    G L I  VE+ D G Y C + NTV
Sbjct: 139 ---FNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-----------------GRYQIKFR 324
             V  G+SV + C V+         + W                        GR+Q +  
Sbjct: 15  LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSH 74

Query: 325 SDKFIRTVDGGLVIMAVEELDAGKYDC 351
                   DG L++  V++ D G Y C
Sbjct: 75  LVGDTFHNDGSLLLQDVQKADEGIYTC 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---L 336
             V  GQ+      V+  P        + WY         +++  S K   T   G   L
Sbjct: 18  HRVPCGQNTRFILNVQSKP-----TAEVKWY-----HNGVELQ-ESSKIHYTNTSGVLTL 66

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
            I+     D+G Y     N          L V  
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 283 TVTWGQSVHLSC-----FVKLPASMANQP---MSWYHYSKDKGRYQ--IKFRSDKFIRTV 332
            V   +   + C     F+K   S A+     + WY   +D+   +       +  I   
Sbjct: 18  QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77

Query: 333 DGGLVIMAVEELDAGKYDCWLGNTVLC---THNLTVDAHSNVADAPTRL 378
              L        D G Y C L NT  C      L V    +  ++P +L
Sbjct: 78  KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 283 TVTWGQSVHLSCFVKLPASMANQ--PMSWYH---------YSKDKG-----RYQIKFRSD 326
               G SV L C++++P         ++W           + + +G       +++F + 
Sbjct: 11  PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA 70

Query: 327 KFIRTV-DGGLVIMAVEELDAGKYDC 351
           +    + +  L +  +   D G Y C
Sbjct: 71  RLGAELRNASLRMFGLRVEDEGNYTC 96

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
            QT + G+S+ +SC         N P    W+     K    +   S   ++  +  L I
Sbjct: 675 NQTTSIGESIEVSCTAS-----GNPPPQIMWF-----KDNETLVEDSGIVLKDGNRNLTI 724

Query: 339 MAVEELDAGKYDCWLGN---TVLCTHNLTV 365
             V + D G Y C   +            +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LV 337
            +   G+ V L          A    ++W+   KDKG   I   SD    +       L 
Sbjct: 487 ISTVVGEEVQLQA----TIEGAEPISVAWF---KDKGE--IVRESDNIWISYSENIATLQ 537

Query: 338 IMAVEELDAGKYDCWLGNTV---LCTHNLTV 365
               E  +AGKY C + N      C   L+V
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 281 KQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
              +  G    L C          +P +SW        +  R  +            G L
Sbjct: 109 NVKIIEGLKAVLPC----TTMGNPKPSVSWIKGDSALRENSRIAV---------LESGSL 155

Query: 337 VIMAVEELDAGKYDCWLGNTV 357
            I  V++ DAG+Y C   N++
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSL 176

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDKF-IRTVDGG---L 336
             V +  +  L C      +   +P+  WY     +   +I     K+ I+   GG   L
Sbjct: 14  LNVRYQSNATLVC----KVTGHPKPIVKWY-----RQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAH 368
           +I +V + DA  Y     N   +V  T +L V+  
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGG---- 335
             +  G  V  +C V   P     +P + W+     K   QI  +SD +    D      
Sbjct: 18  YKIFEGMPVTFTCRVAGNP-----KPKIYWF-----KDGKQISPKSDHYTIQRDLDGTCS 67

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAHSNVADA 374
           L   A    D G Y     N    + CT  L V A ++   +
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 19/92 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
             +  G + +L       P      P  +W              +  +S          +
Sbjct: 12  IKIKAGFTHNLEVDFIGAP-----DPTATWTVGDSGAALAPELLVDAKSSTTS------I 60

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
              + +  D+G Y   + N          + V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 18/105 (17%)

Query: 282 QTVTWGQSVHLSCFV-----------KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR 330
             V  G  + ++C               P    N     Y    +K ++ I + S +   
Sbjct: 146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205

Query: 331 TV----DGGLVIMAVEELDAGKYDCWLGNTVLCTHNLTVDAHSNV 371
                    LVI A +  DAG+  C L         L  D  S +
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQ---GELDADRSSTI 247

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 20/99 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQPM-SWYH----------YSKDKGRYQIKFRSDKFI 329
           Q    G SV L C     P      P   W+              D  R         + 
Sbjct: 31  QQRWVGGSVELHCEAVGSP-----VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85

Query: 330 RTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
           +     + I  + E D G Y+C   N       T    V
Sbjct: 86  QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 280 LKQTVTWGQSVHLSCFV---KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL 336
           L   VT   +V L C V   K    +      WY     K   +I        +     L
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHI-----VWY-----KDEREISVDEKHDFKDGICTL 278

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           +I    + DAG Y+  L +          L  +A
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 282 QTVTWGQSVHLSCFVK-LPASMANQP-MSWYHYSK---DKGRYQIKFRSDKFIRTVDGGL 336
            TV+       +      P     +P   W    K     G+Y++      F       L
Sbjct: 16  TTVSSDSVAKFAVKATGEP-----RPTAIWTKDGKAITQGGKYKLSEDKGGFF------L 64

Query: 337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
            I   +  D+G Y C + N   +V  +  LT+ A
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	100.0
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	100.0
3oky_B	565	Putative uncharacterized protein; transmembrane, l	100.0
1q47_A	495	Semaphorin 3A; beta propeller, signaling protein;	100.0
4gz8_A	667	Semaphorin-3A; multi-domain, cell-CELL signaling,	100.0
3nvx_A	383	Protein A39; beta-propeller, viral protein; HET: N	100.0
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	100.0
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	100.0
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	100.0
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	100.0
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	100.0
3nvn_B	476	Plexin-C1; beta-propeller, signaling, viral protei	100.0
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.02
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.98
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.97
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.96
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.91
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.87
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.85
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.84
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.83
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.82
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.81
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.81
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.81
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.79
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.79
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.78
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.78
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.76
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.76
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.76
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.76
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.76
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.75
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.74
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.74
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.74
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.74
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.73
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.73
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.72
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.72
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.72
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.72
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.71
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.71
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.69
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.69
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.69
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.68
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.67
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.67
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.67
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.66
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.65
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.65
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.6
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.59
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.59
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.57
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.56
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.55
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.53
1he7_A	126	High affinity nerve growth factor receptor; transf	98.46
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.44
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.44
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.43
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.43
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.4
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.37
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.36
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.32
2ens_A	96	Advanced glycosylation END product-specific recept	98.3
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.3
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.3
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.29
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.28
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.28
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.28
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.27
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.26
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.26
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.25
3khq_A	133	B-cell antigen receptor complex-associated protei	98.25
1xt5_A	135	Variable region-containing chitin-binding protein	98.24
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.23
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.19
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.18
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.17
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.17
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.17
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.15
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.14
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.13
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.11
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.11
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.11
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.1
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.09
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.08
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.08
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.07
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.07
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.07
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.06
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.03
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.03
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.03
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.03
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.02
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.02
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.01
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.01
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.01
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.01
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.0
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.0
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.99
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.99
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.99
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.99
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.99
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.99
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.99
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	97.98
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	97.98
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.97
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	97.97
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.96
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.96
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.96
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.96
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	97.95
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.94
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.94
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.94
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.93
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.93
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	97.92
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.92
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.92
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.92
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.92
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.92
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	97.92
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.91
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.91
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.91
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.91
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.91
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.9
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.9
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.9
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.89
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.89
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.89
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.88
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.88
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.88
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.88
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.87
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	97.87
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.87
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.87
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.87
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.86
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.86
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.86
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.86
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.86
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.86
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	97.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.85
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.85
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.85
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.85
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.85
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.85
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	97.85
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.84
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	97.83
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	97.83
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	97.82
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.82
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	97.82
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.82
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.81
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.81
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.81
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.81
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	97.81
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.81
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	97.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.81
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.8
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.8
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.8
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.8
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.8
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.8
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.79
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.78
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.78
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.78
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.78
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.77
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	97.77
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.77
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.77
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.77
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	97.76
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	97.76
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	97.76
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.76
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	97.75
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.75
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.75
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.75
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.75
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.75
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.94
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.75
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.74
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.74
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.74
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.73
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.73
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.73
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	97.73
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	97.73
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.72
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.72
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.72
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	97.72
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.72
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.71
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	97.71
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	97.71
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	97.71
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.71
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.71
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	97.7
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.7
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	97.7
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	97.7
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	97.7
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.69
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.69
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.69
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.69
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.69
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.69
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	97.69
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.69
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.68
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	97.68
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	97.68
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	97.68
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.68
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	97.67
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.67
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.67
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.67
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.66
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.66
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	97.65
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.65
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.65
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.65
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	97.65
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.65
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	97.65
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.64
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.64
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	97.64
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.64
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.64
1c5d_H	215	Monoclonal antibody against the main immunogenic t	97.64
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.63
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	97.63
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.63
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.63
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.63
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	97.62
1p4b_L	135	Antibody variable light chain; FV antibody, antige	97.62
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.62
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.62
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.62
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	97.62
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.62
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.62
3kg5_A	134	B-cell antigen receptor complex-associated protei	97.61
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	97.61
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	97.6
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	97.6
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.6
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.6
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.59
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	97.59
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.59
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	97.59
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	97.59
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.59
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.59
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.58
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	97.58
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	97.58
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	97.58
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.58
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.58
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	97.58
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.57
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.57
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.57
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.57
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	97.57
3b9v_A	120	Heavy chain variable domain; antibody engineering,	97.56
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.56
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.56
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.56
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.54
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	97.54
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.54
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	97.54
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.54
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.53
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	97.53
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	97.53
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	97.53
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	97.53
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	97.53
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	97.52
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	97.52
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.52
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.52
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	97.52
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.51
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.51
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.51
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.51
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.51
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	97.5
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	97.5
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	97.5
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.5
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	97.49
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.49
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	97.48
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.48
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.48
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.48
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.48
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	97.47
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.47
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.47
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.47
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	97.47
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.47
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	97.46
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	97.46
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.46
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	97.46
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.46
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	97.46
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	97.45
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	97.45
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	97.45
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	97.44
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.44
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	97.44
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.44
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	97.44
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	97.44
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	97.43
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.42
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.42
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	97.42
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	97.42
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	97.42
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	97.41
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.41
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.41
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.41
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	97.41
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.41
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.41
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.4
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	97.4
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	97.39
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	97.38
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.38
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.38
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	97.38
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.37
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	97.37
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	97.37
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.37
3k1k_C	123	Enhancer; nanobody, antibody-complex, chromophore,	97.36
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.35
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	97.34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.34
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.34
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.33
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.32
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.32
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	97.31
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.31
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	97.31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.31
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	97.31
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	97.31
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	97.3
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.3
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	97.3
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	97.3
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.29
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	97.28
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.28
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.28
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.28
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	97.26
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	97.25
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.25
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	97.23
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.22
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	97.22
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.21
3k81_A	127	Single strand antibody VHH domain; krepa6, single	97.18
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.17
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.16
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.16
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	97.15
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	97.15
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.15
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.15
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.15
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	97.14
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	97.14
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	97.14
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	97.13
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	97.13
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	97.12
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.12
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.12
2vyr_E	153	Human single domain antibody; zinc, complex, nucle	97.11

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=100.00  E-value=1.6e-77  Score=636.10  Aligned_cols=353  Identities=31%  Similarity=0.532  Sum_probs=300.4

Q ss_pred             CeEEEEEcccccee----ee-----eeccccccCC--CCCceEEEEEe----------CCEEEEEEEeccccccccCcee
Q psy10772          8 RSLYVASDERIKQI----AL-----VMCAHRYDNC--LQPDFVGSYDI----------GKYVFFFFRETAVEYINCGKSV   66 (378)
Q Consensus         8 ~~l~v~~~~~~~~~----~~-----~~rt~~~ds~--~~p~FV~sf~~----------~d~VYFfF~E~a~e~~~~~~~~   66 (378)
                      +.||||+..+....    ++     .+||+ ||++  ++|+||+++.+          ++||||||+|++.|++.+++.+
T Consensus       150 g~Ly~gt~~~~~g~~p~i~Rs~~~~~lrTe-~~~~~L~~p~FV~s~~i~~~~~~~~~~~~~VYFff~e~~~e~~~~~k~~  228 (663)
T 1olz_A          150 GELYSGTSYNFLGSEPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVL  228 (663)
T ss_dssp             TEEEEEEESSTTSCSEEEEEECSSCCBCCC-SSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCE
T ss_pred             CeEEEEEeccccCCCceEEecccccccccc-chhhhccCCceeEeeeeeccccccccCCCEEEEEEeeccccccccCcce
Confidence            57999998765443    22     35885 7888  99999999744          6999999999999998889999


Q ss_pred             eeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeee
Q psy10772         67 FSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        67 ~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      +||||||||+|.||+++|+++||||+||||+|+.|+ .+++||+|||||+++.   ++++|||||+++++++++||||+|
T Consensus       229 ~SRVaRvCk~D~GG~~~l~~~wtSflka~L~Cs~~~-~~~~fn~lq~~~~~~~~~~~~~vlygvFst~~~~~~~SAvC~f  307 (663)
T 1olz_A          229 IPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPD-SGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAY  307 (663)
T ss_dssp             EEEEEEEETTCCCCSSSSTTSCSSCEEEEECCEEGG-GTEECCEEEEEEEECCTTCSSCEEEEEEECSSSCSSEEEEEEE
T ss_pred             eeEEEEECCCCCCcccccccccceEEEEeEEecCCC-CCcccCceeeEEEeccCCCCCCEEEEEEccCCCCCCCcEEEEE
Confidence            999999999999999999999999999999999984 4789999999999864   468999999999999999999999


Q ss_pred             eHHHHHHHhc-cccccc---cCCCCceeeccCCCCCCCCCCCCCCC---------CCCCCcccceeeccccCcccccccC
Q psy10772        144 SIEDIERAFV-GKFKEQ---ATSTSAWLPVLSSRVPEPRPGQCVND---------TETLPDSVLNFIRSHPLMDEAVAHR  210 (378)
Q Consensus       144 sl~dI~~~F~-g~f~~~---~~~~~~w~~~~~~~vP~prpg~C~~~---------s~~~pd~~l~fi~~hpLm~~~V~P~  210 (378)
                      +|+||+++|+ |+|+++   +.++..|++ |.+++|+||||+|+++         +.++||++++|++.||||++.|.|+
T Consensus       308 ~l~~I~~~F~~g~~~~~~~~~~~~~~w~~-~~~~vp~prpg~C~~~~~~~~~~~ss~~lpd~~l~f~~~hpLm~~~v~pi  386 (663)
T 1olz_A          308 NLSTAEEVFSHGKYMQSTTVEQSHTKWVR-YNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPI  386 (663)
T ss_dssp             EHHHHHHHHHHSCBEEEECCSTTCCEEEE-CCSCCCSSCTTCCCCHHHHTTTCCSGGGSCHHHHHHHHHCCEEEEEECCG
T ss_pred             EHHHHHHHHhhccccccccccCCCceeEe-cCCCCCCCCCccCCCcccccccccccccCCcccccccccCcccccccccc
Confidence            9999999998 999987   346789998 5899999999999864         4678999999999999999999999


Q ss_pred             CCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE---------------------------------
Q psy10772        211 DNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV---------------------------------  257 (378)
Q Consensus       211 ~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V---------------------------------  257 (378)
                      .++|+|++.+.+||+||||++++.+   +++|+|+||||++|+||||                                 
T Consensus       387 ~~~pll~~~~~~~T~iaVd~v~~~~---~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~  463 (663)
T 1olz_A          387 DNRPRLIKKDVNYTQIVVDRTQALD---GTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGN  463 (663)
T ss_dssp             GGSCSEEEESCCEEEEEEEEEECTT---SCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSS
T ss_pred             CCcceEEeCCCceEEEEEEEEeccC---CCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCc
Confidence            9999999999999999999998875   5789999999999999976                                 


Q ss_pred             ------------------------------------------------------eceeeeeccCCCCCccccccc--cee
Q psy10772        258 ------------------------------------------------------KVRLLQDVSNTSDSICESSVG--RLK  281 (378)
Q Consensus       258 ------------------------------------------------------~~~~lqd~~~~~~~~C~~~~~--~k~  281 (378)
                                                                            ...|+||+. +++++|.....  .+.
T Consensus       464 ~~Lyv~s~~~V~~vpl~~C~~y~sC~~Cl~arDPyCgW~~~~~~C~~~~~c~~~~~~~~Qd~~-~~~~~C~~~~~~~~~~  542 (663)
T 1olz_A          464 RFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMS-GDASVCPDKSKGSYRQ  542 (663)
T ss_dssp             CEEEEECSSCEEEEESCCGGGCCSHHHHHHTTCTTEEEETTTTEEEETTTCCTTGGGCBCCTT-CCGGGSSSCCCCEEEE
T ss_pred             cEEEEEEcCeEEEEEchhCCCCCCHHHHhcCCCCCccccCCCCceeCcccCCCccccceeecc-cCcccCCCcccccceE
Confidence                                                                  024578887 56688975432  366


Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe-----
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT-----  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~-----  356 (378)
                      +++.+|++++|+|.+++|.+    .++|++|+.+     +....+++++.+++||+|++++.+|+|.|.|++.|.     
T Consensus       543 v~v~~g~~~~L~C~~~sp~a----~v~W~~~~~~-----l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~  613 (663)
T 1olz_A          543 HFFKHGGTAELKCSQKSNLA----RVFWKFQNGV-----LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT  613 (663)
T ss_dssp             EEEETTSCEEECCCCSCTTC----EEEEEESSSB-----CCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             EEEecCCcEEEEccCCCCCC----cEEEEECCee-----ccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCC
Confidence            79999999999999988543    8999999875     443455677777899999999999999999999997     


Q ss_pred             ---eeEEEeeeecccccCCCCCC
Q psy10772        357 ---VLCTHNLTVDAHSNVADAPT  376 (378)
Q Consensus       357 ---~l~~~~~~v~~~~c~~~~~~  376 (378)
                         +++.|.|+|...+-+.+.|+
T Consensus       614 ~~~~~~~~~l~V~v~P~~~~~p~  636 (663)
T 1olz_A          614 VFQVVAKHVLEVKVVPKPVVAPT  636 (663)
T ss_dssp             EEEEEEEEEEEEEC---------
T ss_pred             ceEEEEEEEEEEEeCCccCCCCC
Confidence               79999999998777666543

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.9e-73  Score=593.60  Aligned_cols=326  Identities=24%  Similarity=0.404  Sum_probs=276.5

Q ss_pred             CeEEEEEc---cccce--eee-----eeccccccCC--CCCceEEEEEe------CCEEEEEEEeccccccccCceeeee
Q psy10772          8 RSLYVASD---ERIKQ--IAL-----VMCAHRYDNC--LQPDFVGSYDI------GKYVFFFFRETAVEYINCGKSVFSR   69 (378)
Q Consensus         8 ~~l~v~~~---~~~~~--~~~-----~~rt~~~ds~--~~p~FV~sf~~------~d~VYFfF~E~a~e~~~~~~~~~sR   69 (378)
                      +.||.|+.   ..+..  +++     .+||+   ++  |||+||+|+.+      ||||||||||++.|++..++.++||
T Consensus       141 g~LYs~t~~~~f~g~~p~i~R~~g~~~lrt~---~~wL~eP~FV~s~~i~~~~~~~d~VYFFFrE~a~e~~~~~~~~~SR  217 (590)
T 3nvq_A          141 DEVYSTIRKQEYNGKIPRFRRIRGESELYTS---DTVMQNPQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSR  217 (590)
T ss_dssp             TEEEECSCSSTTCCSCCCCEEEESSSCEECC---TTSCSSCEEEEEEEECCSSGGGCEEEEEEEEECSCCCTTSCSEEEE
T ss_pred             CceeeeeeeccccCCCceeEEcCCCCccccc---cchhcCCceeEEEeccccCCCCCEEEEEecccccccccccceeeee
Confidence            67899983   22222  333     35666   56  99999999987      5899999999999998888889999


Q ss_pred             EeeccccccCCcc-cccccceeeeeeeeeccCCCCCCcccceeeeEEeecC-----CCcEEEEEEecccCCCCceeeeee
Q psy10772         70 VARVCKRDTGGKN-ILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG-----DDTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        70 VaRVCk~D~GG~~-~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~-----~~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      ||||||||.||.+ +|+++||||+||||+|+.||. ++|||+|||||++++     ++++|||||++++   ++||||+|
T Consensus       218 VARVCknD~GG~~~ll~~~WTSFlKarL~Cs~pg~-~~~FN~LQ~a~~~~~~~~~~~~~vlYgVFt~~~---~~SAVCaf  293 (590)
T 3nvq_A          218 VAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAAT-NKNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPW---NYSAVCVY  293 (590)
T ss_dssp             EEEEETTCCCBSSTTTTTBCSCCEEEEBCCBCTTT-CCBCCEEEEEEEECCTTCCGGGCEEEEEEECTT---CCEEEEEE
T ss_pred             eeeecCCCccccchhhhcceeEEEEEEEECCCCCC-CCCccceeeEEEccccCCCCCCCEEEEEEecCC---CCceEEEe
Confidence            9999999999986 569999999999999999975 789999999999875     3579999999764   57999999


Q ss_pred             eHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCC--CceeEEecCC
Q psy10772        144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRD--NKPVFYRRDL  221 (378)
Q Consensus       144 sl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~--~~Pll~~~~~  221 (378)
                      +|+||+++|+|+         +|.. |.+++|.||||+|++++..+||++++|++.||||+++|.|++  +.|||. .+.
T Consensus       294 sl~dI~~~F~~~---------~~~~-y~~~vp~prPg~C~~~s~~~pd~~l~f~~~hplM~~~v~p~~p~~~pL~~-~~~  362 (590)
T 3nvq_A          294 SLGDIDKVFRTS---------SLKG-YHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVAQRVEPMGPLKTPLFH-SKY  362 (590)
T ss_dssp             EHHHHHHHHHHC---------CBTT-CCSCCCSSCTTCCCSSSCCBCHHHHHHHHHCCBBSSCBCCSSSSCCCSEE-ESS
T ss_pred             eHHHHHHHHhcC---------ceee-ecCCCCCCCCCcCcCCCCCCcccccchhhcccccccccCCCCccccceEe-cCC
Confidence            999999999964         2333 467899999999999888999999999999999999999987  678886 567


Q ss_pred             cceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE--------------------------------------------
Q psy10772        222 LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV--------------------------------------------  257 (378)
Q Consensus       222 ~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V--------------------------------------------  257 (378)
                      +||+||||+|++.+   +.+|+|+||||++|+||||                                            
T Consensus       363 ~~T~IaVd~v~a~~---g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~  439 (590)
T 3nvq_A          363 HYQKVAVHRMQASH---GETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQW  439 (590)
T ss_dssp             CEEEEEEEEEECTT---SCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSS
T ss_pred             cEEEEEEEEEeccC---CCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecc
Confidence            89999999998875   5699999999999999976                                            


Q ss_pred             -----------------------------------------eceeeeeccCCCC-Cccccc----ccceeEEEEeCCeee
Q psy10772        258 -----------------------------------------KVRLLQDVSNTSD-SICESS----VGRLKQTVTWGQSVH  291 (378)
Q Consensus       258 -----------------------------------------~~~~lqd~~~~~~-~~C~~~----~~~k~~~~~~G~s~~  291 (378)
                                                               ...|+||+.++++ .+|.+.    ...|.+++.+|++++
T Consensus       440 ~V~qVPl~~C~~y~~sC~~Cl~ArDPYCGWc~~~C~~~~~~~~~~~Qdv~~~~~~~~C~~~~~~~~~~~~v~~~~~~~~~  519 (590)
T 3nvq_A          440 EVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYY  519 (590)
T ss_dssp             EEEEEETTCCTTCCSHHHHHHHTCCTTEEEETTEEEETTSSSSCCBCCCSSSCTTTTSSSSSCCCCCEEEEEECTTCCEE
T ss_pred             eEEEcchhhccccccchhHHhcCCCCCCCCccccceecCCCCCcceeeccCCCchhhcCCCccCCccceEEEEccCCceE
Confidence                                                     1347899999997 889842    245789999999999


Q ss_pred             eeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC----eeeEEEeee
Q psy10772        292 LSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN----TVLCTHNLT  364 (378)
Q Consensus       292 L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~----~~l~~~~~~  364 (378)
                      |+|.++|+.|    ++.|++++..     +.. .+.++..+++||||++++.+|+|.|.|++.|    +++++|.|.
T Consensus       520 L~C~~~S~~A----~~~W~~~~~~-----~~~-~~~~~~~~~~~lli~~~~~~~~G~Y~C~~~E~gf~~~~~~y~l~  586 (590)
T 3nvq_A          520 LSCPMESRHA----TYSWRHKENV-----EQS-CEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLL  586 (590)
T ss_dssp             EEEECCCTTS----EEEEEETTEE-----EEE-ECTTCSSSEEEEEESSCCSTTCEEEEEEEESSSCEEEEEEEEEE
T ss_pred             eeCCCCCCcc----eeEEEeCCCc-----ccc-ccccccccccEEEEeccChhhCcEEEEEEEECCceEEEEEEEEe
Confidence            9999987755    7899998754     321 2234566789999999999999999999988    999999994

>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*

Probab=100.00  E-value=7.7e-71  Score=571.05  Aligned_cols=246  Identities=41%  Similarity=0.729  Sum_probs=225.0

Q ss_pred             CeEEEEEccccce----eee------eeccccccCC--CCCceEEEEEeCCEEEEEEEeccccccccCceeeeeEeeccc
Q psy10772          8 RSLYVASDERIKQ----IAL------VMCAHRYDNC--LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCK   75 (378)
Q Consensus         8 ~~l~v~~~~~~~~----~~~------~~rt~~~ds~--~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sRVaRVCk   75 (378)
                      +.||.|+..+-..    +++      .+||++||++  |||+||++|.+||||||||+|+++|++.++|.++||||||||
T Consensus       165 g~LYsgt~~dF~g~d~~I~Rs~g~~~~lRT~~~~s~wLneP~FV~a~~~~d~VYFfF~E~a~E~~~~~k~~~sRVARVCk  244 (565)
T 3oky_B          165 GKLYSATVTDFLAIDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCK  244 (565)
T ss_dssp             TEEEEEEESSTTCCCEEEEEECTTSCCEECCTTCTTTCSSCEEEEEEEETTEEEEEEEEECGGGSSSSCCEEEEEEEEET
T ss_pred             CEEEEEEecccCCCCceEEecCCCCCceeeeccchhhhcCCceeEEEeeCCEEEEEEccccccccccCcceeeeEeeeCC
Confidence            6799999664332    232      5899999999  999999999999999999999999999999999999999999


Q ss_pred             cccCC-cccccccceeeeeeeeeccCCCCCCcccceeeeEEee--cCCCcEEEEEEecccCCCCceeeeeeeHHHHHHHh
Q psy10772         76 RDTGG-KNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKV--PGDDTKFYGVFTTSTTGLMGSAICSFSIEDIERAF  152 (378)
Q Consensus        76 ~D~GG-~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~--~~~~~~ly~vFtt~~~~~~~SAVC~ysl~dI~~~F  152 (378)
                      ||.|| +++|+++|||||||||+|+.||+.++|||+||||+.+  ...+++||||||++|+++.+||||+|+|+||+++|
T Consensus       245 ~D~GG~~r~L~~~WtSFlKarL~Cs~pg~~~~~fn~lQav~~~~~~~~~~~~YgvFtt~~~~~~~SAVC~y~l~dI~~~F  324 (565)
T 3oky_B          245 NDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVF  324 (565)
T ss_dssp             TCCCCCSSSSTTBCSSCEEEEBCCEECSSSCEECCEEEEECCCEEETTEEEEEEEEECCSSSSCCEEEEEEEHHHHHHHT
T ss_pred             CCCCCcccccccceeEEEEEEEEcCCCCCCCccccceeeeeeeeccCCCCEEEEEEccCCCCCCccEEeeccHHHHHHHh
Confidence            99999 6999999999999999999999889999999999743  23467999999999999999999999999999999


Q ss_pred             ccccccccCCCCceeeccCCCCCCCCCCCCCCC--------CCCCCcccceeeccccCcccccccCCCceeEEecCC--c
Q psy10772        153 VGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND--------TETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDL--L  222 (378)
Q Consensus       153 ~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~--------s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~--~  222 (378)
                      +|+||++++++++|++++.++||+||||+|+++        ++++||++|+|+|.||||+++|+|+.++|||++++.  +
T Consensus       325 ~G~fk~~~~~~~~W~~~~~~~vP~PrPg~C~~~~~~~~~~ss~~lpd~~L~fik~hPLM~~~V~p~~~~Pll~~~~~~y~  404 (565)
T 3oky_B          325 TGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYR  404 (565)
T ss_dssp             TSCBEEESSTTSCEEECCGGGSCSSCTTCCTTSSTTTTCSSGGGCCHHHHHHHHHCCBBSSCBCCGGGSCSEEECSSSSC
T ss_pred             cCCcccccCCCcceEecCCCcCCCCCCCcccCCCccccccccccCCHHHhhHhhhCcccccCCCCccceeEEEEcCCccc
Confidence            999999999999999988899999999999975        357999999999999999999999999999999875  5


Q ss_pred             ceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        223 FTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       223 ~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      ||+||||++++.    +++|+|+||||++|+||||
T Consensus       405 lT~IaVd~~~g~----~~~ytVlFLGTd~G~l~Kv  435 (565)
T 3oky_B          405 LTKIAVDNAAGP----YQNHTVVFLGSEKGIILKF  435 (565)
T ss_dssp             EEEEEEEEEETT----TTCEEEEEEEETTSEEEEE
T ss_pred             eEEEEEEEEecC----CCceEEEEEECCCCeEEEE
Confidence            699999998754    5899999999999999999

>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1

Probab=100.00  E-value=3e-65  Score=526.08  Aligned_cols=245  Identities=37%  Similarity=0.690  Sum_probs=224.9

Q ss_pred             CeEEEEEccccceee----------eeeccccccCC--CCCceEEEEEe-------CCEEEEEEEeccccccccCceeee
Q psy10772          8 RSLYVASDERIKQIA----------LVMCAHRYDNC--LQPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFS   68 (378)
Q Consensus         8 ~~l~v~~~~~~~~~~----------~~~rt~~~ds~--~~p~FV~sf~~-------~d~VYFfF~E~a~e~~~~~~~~~s   68 (378)
                      +.||||+..+....+          ..+||+++|++  ++|+||++|.+       ++||||||+|++.|.+++++.++|
T Consensus       159 ~~LY~gt~~d~~g~~~~i~rsl~~~~~lrT~~~d~~~l~~p~FV~s~~i~~~~~~~~~~VYFff~e~~~e~~~~~~~~~S  238 (495)
T 1q47_A          159 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHA  238 (495)
T ss_dssp             TEEEEEEECSTTSCCEEEEEEESSSCCEECCSSCTTTCSSCEEEEEEEECCSSSGGGCEEEEEEEEECCCCSSCCCCEEE
T ss_pred             CeEEEEEeccCCCCCcceeeecCccccccccccCcccccCcceEEEEEecccccCCCCEEEEEEEeecccccccCcceEE
Confidence            689999987765432          25699999999  99999999976       599999999999999888999999


Q ss_pred             eEeeccccccCCcccccccceeeeeeeeeccCCCCC--CcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeee
Q psy10772         69 RVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEF--PFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        69 RVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~--~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      |||||||+|.||+++|+++||||+||||+|+.||+.  +++||+|||||+++.   ++++|||||+++++++++||||+|
T Consensus       239 RVaRvCk~D~GG~~~l~~~wtSflka~L~Cs~~g~~g~~~~fn~lq~v~~~~~~~~~~~vlygvFst~~~~~~~SAvC~f  318 (495)
T 1q47_A          239 RIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMY  318 (495)
T ss_dssp             EEEEEETTCCCBSSSSBTBCSSCEEEEBCCEECCTTSCCEECCEEEEEEEECCSSTTCCEEEEEEECSCSSSCCEEEEEE
T ss_pred             EEEEECCCCCCccccchhccceEEEEEEEccCCCCCCCccccCceeeEEEeccCCCCCcEEEEEEecCCCCCCCcEEEEe
Confidence            999999999999999999999999999999999875  689999999999864   368999999999999999999999


Q ss_pred             eHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCC-------CCCCCcccceeeccccCcccccccCCCceeE
Q psy10772        144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND-------TETLPDSVLNFIRSHPLMDEAVAHRDNKPVF  216 (378)
Q Consensus       144 sl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~-------s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll  216 (378)
                      +|+||+++|+|+|+++++++++|.++ .+++|+||||.|.+.       +.++||++++|++.||||++.|.|+.++|||
T Consensus       319 ~l~~I~~~F~g~~~~~~~~~~~w~~~-~g~vp~prpg~C~~~~~~~~~~s~~~pd~~l~f~~~hpLm~~~v~pi~~~Pll  397 (495)
T 1q47_A          319 SMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIM  397 (495)
T ss_dssp             CHHHHHHHHTSCBEECSSTTBCCEEC-CSCCCSSCTTCCCCSSTTSCSCGGGCCHHHHHHHHTCCBBSSCBCCGGGSCSE
T ss_pred             EHHHHHHHHhhhhhhccCCccceeee-cCccCCCCCCccCCCCccccccccccchhhhhhcccCccccccccccCcccEE
Confidence            99999999999999999999999985 899999999999874       4568999999999999999999999999999


Q ss_pred             EecCC--cceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        217 YRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       217 ~~~~~--~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      ++.+.  +||+||||++++.    +++|+|+||||++|+||||
T Consensus       398 ~~~~~~~~lT~IaVd~v~~~----~~~~tV~flGT~~G~l~Kv  436 (495)
T 1q47_A          398 IKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKV  436 (495)
T ss_dssp             EESSSSSCEEEEEEEEEECS----SCEEEEEEEEETTSCEEEE
T ss_pred             EecCCccceEEEEEEEEccC----CCcEEEEEEeCCCcEEEEE
Confidence            98764  7999999999887    4789999999999999999

>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}

Probab=100.00  E-value=1.6e-62  Score=519.43  Aligned_cols=331  Identities=30%  Similarity=0.546  Sum_probs=259.7

Q ss_pred             CeEEEEEccccce----ee------eeeccccccCC--CCCceEEEEEe-------CCEEEEEEEeccccccccCceeee
Q psy10772          8 RSLYVASDERIKQ----IA------LVMCAHRYDNC--LQPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFS   68 (378)
Q Consensus         8 ~~l~v~~~~~~~~----~~------~~~rt~~~ds~--~~p~FV~sf~~-------~d~VYFfF~E~a~e~~~~~~~~~s   68 (378)
                      +.||+|+...-..    ++      ..+||+++|++  ++|+||++|.+       +|||||||+|+++|++.+++.++|
T Consensus       167 g~LYsGT~~df~g~d~~I~Rsl~~~~~lrT~~~~s~~l~~P~FV~s~~i~~~~~~~~d~VYFFFrE~a~e~~~~~k~~~S  246 (667)
T 4gz8_A          167 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHA  246 (667)
T ss_dssp             TEEEEEEECSTTSCCEEEEEESCSSCCEECCSSCTTTCSSCEEEEEEEECCSSSTTSCEEEEEEEEECCCC-CCCCCEEE
T ss_pred             CeEEEEeccccCCCCceEEecCCCCCcceeeecccccccCCcceeeeeecccccCCCCEEEEEEEEEeeccCCcccceee
Confidence            5799998654211    22      36799999999  99999999977       689999999999999999999999


Q ss_pred             eEeeccccccCCcccccccceeeeeeeeeccCCCC--CCcccceeeeEEeecCC---CcEEEEEEecccCCCCceeeeee
Q psy10772         69 RVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FPFYFNEIQDIYKVPGD---DTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        69 RVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~--~~~~fn~lq~v~~~~~~---~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      |||||||||.||+++|+++||||+||||+|++||+  .+++||+||+++.+++.   +++|||||+++++++++||||+|
T Consensus       247 RVaRVCknD~GG~~~L~~~wtSFlKarL~Cs~pg~~~~~~~fn~Lq~v~~~~~~~~~~~vlYaVFtt~~~~~~~SAVC~F  326 (667)
T 4gz8_A          247 RIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMY  326 (667)
T ss_dssp             EEEEEETTCCCCSSSSTTBCSSCEEEEECCEECCTTSCCEECCEEEEEEEECCSCTTCCEEEEEEECSCSSSCCEEEEEE
T ss_pred             eeeeeCCCCCCCccccccceeeEEEEEEEeecCCCCcccchhHhhhheeEccCCCCCCcEEEEEecCCCCCCCCcEEEEE
Confidence            99999999999999999999999999999999986  46899999999998653   57999999999999999999999


Q ss_pred             eHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCC-------CCCCCCcccceeeccccCcccccccCCCceeE
Q psy10772        144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVN-------DTETLPDSVLNFIRSHPLMDEAVAHRDNKPVF  216 (378)
Q Consensus       144 sl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~-------~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll  216 (378)
                      +|+||+++|+|+|++++++.++|.++ .+++|.||||.|+.       .+.++||++++|++.||||+++|.|+.++|+|
T Consensus       327 sL~dI~~~F~g~~k~~~~~~~~w~~~-~~~vp~prpg~c~~~~~~~~~ss~~lpd~~L~f~k~hpLm~~~V~Pi~~~Pll  405 (667)
T 4gz8_A          327 SMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIM  405 (667)
T ss_dssp             EHHHHHHHHHSCBEECSSTTBCCEEC-CSCCCSSCTTCCCCSSSSCCCSSTTSCHHHHHTTTSCCBBSSCBCCGGGSCSE
T ss_pred             EcHHHHHHHhhhhhcccCCCcccccc-cCCcCCCCccccCCCccCcccCcccCChhhccccccCCCcccccCCCCCCceE
Confidence            99999999999999999999999984 89999999999975       35689999999999999999999999999999


Q ss_pred             EecC--CcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeee
Q psy10772        217 YRRD--LLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSC  294 (378)
Q Consensus       217 ~~~~--~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C  294 (378)
                      ++.+  .+||+||||++++.    +++|+|+||||++|+||||-...-+..      .     ....+.+.+.     .-
T Consensus       406 ~~~~~~~~lT~IaVd~v~~~----~g~ytVlFLGT~~G~I~Kvv~~~~~~~------~-----~~~~~~leEi-----~v  465 (667)
T 4gz8_A          406 IKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKVVSVPKETW------H-----DLEEVLLEEM-----TV  465 (667)
T ss_dssp             EECSSSCCEEEEEEEEEECS----SCEEEEEEEEETTSEEEEEEEEC-----------------CEEEEEEEE-----EC
T ss_pred             EEcCcccceeEEEEEEEecC----CCcEEEEEEECCCCeEEEEEEcCCCCc------c-----ccceEEEEEE-----ee
Confidence            9875  48999999999876    578999999999999999831100100      0     0001111000     00


Q ss_pred             eeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCC---eEEEEEeCCeeeEEEeeeecccccC
Q psy10772        295 FVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDA---GKYDCWLGNTVLCTHNLTVDAHSNV  371 (378)
Q Consensus       295 ~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~Ds---G~Y~C~~~~~~l~~~~~~v~~~~c~  371 (378)
                      .. .+ .    +|.=+.         |..+.+..++.++.+++=..|+.+..   -+-.|.+..++.|.|+=  ..|.|.
T Consensus       466 ~~-~~-~----pI~~L~---------ld~~~~~LYV~t~~~V~kVPl~~C~~y~~sC~~Cl~ArDPYCGW~~--~~Csr~  528 (667)
T 4gz8_A          466 FR-EP-T----TISAME---------LSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRY  528 (667)
T ss_dssp             SS-SC-C----CCCEEE---------EETTTTEEEEEBSSCEEEEESCCGGGSCSSHHHHHHTCCTTEECCS--SSCEEC
T ss_pred             cC-CC-c----eeeeEE---------EcCCCCEEEEEECCEEEEEEhhhccCccccHHHHhcCCCCCCCCcc--CcCeeE
Confidence            00 01 1    121000         11011223556788888888887752   25679999999999983  666666


Q ss_pred             CCCCC
Q psy10772        372 ADAPT  376 (378)
Q Consensus       372 ~~~~~  376 (378)
                      .|+..
T Consensus       529 ~~~~~  533 (667)
T 4gz8_A          529 FPTAK  533 (667)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            77654

>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*

Probab=100.00  E-value=1.5e-58  Score=454.02  Aligned_cols=223  Identities=21%  Similarity=0.387  Sum_probs=190.7

Q ss_pred             CeEEEEEccccce---eee-------eeccccccCC--CCCceEEEEEe----CCEEEEEEEeccccccccCceeeeeEe
Q psy10772          8 RSLYVASDERIKQ---IAL-------VMCAHRYDNC--LQPDFVGSYDI----GKYVFFFFRETAVEYINCGKSVFSRVA   71 (378)
Q Consensus         8 ~~l~v~~~~~~~~---~~~-------~~rt~~~ds~--~~p~FV~sf~~----~d~VYFfF~E~a~e~~~~~~~~~sRVa   71 (378)
                      +.||.|+..+-..   +++       .+||.   ++  |+|+||++|..    +|||||||+|++.|.   .+.++||||
T Consensus       106 g~LYsat~~d~G~~p~i~R~~g~~~~~LrT~---d~wLn~P~FV~s~~~~~~dddkVYFFFrE~a~e~---~~~~~SRVA  179 (383)
T 3nvx_A          106 ECVLSDINISKEGIKRWRRFDGPCGYDLYTA---DNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK---RIVKIPYIA  179 (383)
T ss_dssp             TEEEECSCSSTTCCCCCEECSBTTBSCEECC---TTSSCTTCCSEEEEEEETTEEEEEEEEEEEECSS---SCEEEEEEE
T ss_pred             CeEEEEEcccCCCCceEEecCCCCCcccccc---ccccCCcceeEEEccccCCCCEEEEEEEeecccc---cceeeehhh
Confidence            5688887554211   122       23443   45  99999999974    699999999999764   256899999


Q ss_pred             eccccccCCccccc-ccceeeeeeeeeccCCCCCCcccceeeeEEeecCCCcEEEEEEecccCCCCceeeeeeeHHHHHH
Q psy10772         72 RVCKRDTGGKNILS-QNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTSTTGLMGSAICSFSIEDIER  150 (378)
Q Consensus        72 RVCk~D~GG~~~L~-~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~~~~~ly~vFtt~~~~~~~SAVC~ysl~dI~~  150 (378)
                      ||||||.||+++|+ ++|||||||||+|++||..  +||++|++++.+.++++|||+||+++   .+||||+|+|+||++
T Consensus       180 RVCknD~GG~~~L~~~kWTSFLKArL~Cs~pG~~--~~nllq~~~~~~~~~~vlYgvFss~~---~~SAVC~ysl~dI~~  254 (383)
T 3nvx_A          180 QMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRS--YRQIIHSRTIKTDNDTILYVFFDSPY---SKSALCTYSMNTIKQ  254 (383)
T ss_dssp             EEETTCCCCSSGGGTTBCSSCEEEEECCEETTEE--CCEEEEEEEEECSSCEEEEEEEECSS---SEEEEEEEEHHHHHH
T ss_pred             hcCccCCCCcccchhcceeeEEEEEEECCCCCcc--cccEEEEEEecCCCCcEEEEEecCCC---CCcEEEeeeHHHHHH
Confidence            99999999998875 9999999999999999853  78999999987666789999999864   689999999999999


Q ss_pred             HhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCCCceeEEecCCcceEEEEEE
Q psy10772        151 AFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDV  230 (378)
Q Consensus       151 ~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~~~T~IaVd~  230 (378)
                      +|+|++++         . +++++|+||||+|.+++..+||++++|+|.||||+++|+|++++|+|+ .+.+||+||||+
T Consensus       255 ~F~g~~~~---------~-~~~~vP~PRPG~C~~~~~~lpd~tl~fik~hpLMd~~V~P~~~~Pl~~-~~~~ft~IaVD~  323 (383)
T 3nvx_A          255 SFSTSKLE---------G-YTKQLPSPAPGICLPAGKVVSHTTFEVIEKYNVLDDIIKPLSNQPIFE-GPSGVKWFDIKE  323 (383)
T ss_dssp             HHHHCCBT---------T-CCSCCCSSCTTCCCCTTCCCCHHHHHHHHHCCEEEEEECCGGGSCSEE-EETTCCEEEEEE
T ss_pred             HhcCCccc---------c-cCCCCCCCCCCcccCCCCCCChHHHHHHHhCcccccccCCCCCCceEe-cCcceEEEEEEE
Confidence            99998653         2 478999999999999988899999999999999999999999999999 678999999999


Q ss_pred             EEeeeecCCCeEEEEEEECCCeeEEEEe
Q psy10772        231 VQYEVFGTTSEYIVYFAATTTLRTVFVK  258 (378)
Q Consensus       231 v~~~~~~~~~~ytV~flGT~~G~v~~V~  258 (378)
                      +++.    ++.|+||||||+  .|++.+
T Consensus       324 v~~~----~~~y~VlflgTn--~~~~~~  345 (383)
T 3nvx_A          324 KENE----HREYRIYFIKEN--SIYSFD  345 (383)
T ss_dssp             CSSS----TTCEEEEEEETT--EEEEEE
T ss_pred             EcCC----CCeEEEEEEecc--cceecc
Confidence            8874    699999999999  577663

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*

Probab=100.00  E-value=3.5e-49  Score=410.43  Aligned_cols=194  Identities=18%  Similarity=0.340  Sum_probs=170.1

Q ss_pred             CCceEEEEEeCCEEEEEEEeccc-----cccccCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccc
Q psy10772         35 QPDFVGSYDIGKYVFFFFRETAV-----EYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFN  109 (378)
Q Consensus        35 ~p~FV~sf~~~d~VYFfF~E~a~-----e~~~~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn  109 (378)
                      +|+||++|+.++||||||+|.+.     |++.+++.++||||||||+|.        +||||+||||+|+.||   .+||
T Consensus       210 ~~~fV~aF~~~~~VYF~~~e~~~~~~~~e~~~~~~~~~SRvaRvCk~D~--------~wtSflka~L~Cs~~g---~~fn  278 (539)
T 3al9_A          210 DIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTRAG---VEYR  278 (539)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCC----------CBEEEEEEEEESSCT--------TCTTCEEEEEEEEETT---EEEE
T ss_pred             CcceEEEEecCCEEEEEEEecccccccccccccccceeeEEEEEcCCcc--------ccceEEEEEeecCCCC---cCcc
Confidence            68899999999999999999875     555678999999999999997        5999999999999987   4899


Q ss_pred             eeeeEEeecC------------CCcEEEEEEeccc----CCCCceeeeeeeHHHHHHHhccc----cccccCCCCceeec
Q psy10772        110 EIQDIYKVPG------------DDTKFYGVFTTST----TGLMGSAICSFSIEDIERAFVGK----FKEQATSTSAWLPV  169 (378)
Q Consensus       110 ~lq~v~~~~~------------~~~~ly~vFtt~~----~~~~~SAVC~ysl~dI~~~F~g~----f~~~~~~~~~w~~~  169 (378)
                      +|||||+++.            ++++|||||++++    +++++||||+|+|+||+++|+|+    |+++...+..|+. 
T Consensus       279 ~lqa~~~~~~g~~La~~l~~~~~~~vlygvFs~~~~~~~~~~~~SAvC~f~l~~I~~~F~~~~~~cf~~~~~~~~~w~~-  357 (539)
T 3al9_A          279 LLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLL-  357 (539)
T ss_dssp             EEEEEEEECCCHHHHHHHTCCTTSCEEEEEEEEBSBCSSSCCSCEEEEEEEHHHHHHHHHHHHHHHHTTCSBCCCHHHH-
T ss_pred             hhheeeeccccccchhhcccCCCCCEEEEEEecCccccCCCCCCCEEEEEEHHHHHHHHHhhHHhhhccCCccccceec-
Confidence            9999998643            4789999999864    57889999999999999999987    6777667788973 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCCCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEEC
Q psy10772        170 LSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT  249 (378)
Q Consensus       170 ~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT  249 (378)
                             ++||.|.+.+..++|++++|++.||||.  +.|+.++|+|++.+.+||+|+|+.        .++|+|+||||
T Consensus       358 -------~~pg~C~~~~~~~~d~~~~~~~~~pL~~--~~p~~~~pl~~~~~~~lT~vav~~--------~~~~tV~flGT  420 (539)
T 3al9_A          358 -------GKDVQCTKAPVPIDDNFCGLDINQPLGG--STPVEGLTLYTTSRDRLTSVASYV--------YNGYSVVFVGT  420 (539)
T ss_dssp             -------CSCCBCCCCCCCCCTTCCCCSSSCSBCC--SSCEECEEEEEESSSCEEEEEEEE--------ETTEEEEEEEE
T ss_pred             -------CCCCCCcCCCCCCccccccccccccccc--cccccccceEEecccceEEEEeec--------cCCeEEEEEEc
Confidence                   4789999988889999999999999994  679999999999989999999987        47899999999


Q ss_pred             CCeeEEEE
Q psy10772        250 TTLRTVFV  257 (378)
Q Consensus       250 ~~G~v~~V  257 (378)
                      ++|+||||
T Consensus       421 ~~G~l~KV  428 (539)
T 3al9_A          421 KSGKLKKI  428 (539)
T ss_dssp             TTSEEEEE
T ss_pred             CCCeEEEE
Confidence            99999998

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=403.80  Aligned_cols=216  Identities=15%  Similarity=0.276  Sum_probs=176.4

Q ss_pred             cCeEEEEEcccccee---e--ee--------------------eccccccCCCCCceEEEEEeCCEEEEEEEeccccccc
Q psy10772          7 HRSLYVASDERIKQI---A--LV--------------------MCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYIN   61 (378)
Q Consensus         7 ~~~l~v~~~~~~~~~---~--~~--------------------~rt~~~ds~~~p~FV~sf~~~d~VYFfF~E~a~e~~~   61 (378)
                      ...||||++.+....   .  .+                    +||+ |+++++|+||++|..|+||||||+|++.|.. 
T Consensus       147 ~~~LyvGt~~d~~~~~~~~p~Is~R~L~~~~~~~~F~~~~~~~l~t~-~~~~~~~~FV~aF~~~~~VYF~f~e~~~~~~-  224 (528)
T 3ol2_B          147 EPLLFVGRGYTSRGVGGGIPPITTRALWPPDPQAAFSYEETAKLAVG-RLSEYSHHFVSAFARGASAYFLFLRRDLQAQ-  224 (528)
T ss_dssp             CEEEEEEECCCC---CCCCCSEEEEESSCSSGGGTTCEEEEEECCCS-CHHHHCCEEEEEEEETTEEEEEEEEECTTST-
T ss_pred             ceEEEEEEeccCCCccCCCcceEEeecCCccccccccccccceeEec-ccccCCCcEEEEEecCCEEEEEEEEEccccc-
Confidence            369999999988751   1  22                    3342 4555899999999999999999999998875 


Q ss_pred             cCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC----CCcEEEEEEecccCCC--
Q psy10772         62 CGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG----DDTKFYGVFTTSTTGL--  135 (378)
Q Consensus        62 ~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~----~~~~ly~vFtt~~~~~--  135 (378)
                       ++.++||||||||+|..        |+||+||||+|+.+     +||+|||||+++.    ++++|||||+++++.+  
T Consensus       225 -~~~~~sRvaRvCk~D~~--------w~Sy~k~~L~C~g~-----~fn~lQaa~~~~~g~~l~~~vly~vFs~~~~~~~~  290 (528)
T 3ol2_B          225 -SRAFRAYVSRVCLRDQH--------YYSYVELPLACEGG-----RYGLIQAAAVATSREVAHGEVLFAAFSSAAPPTVG  290 (528)
T ss_dssp             -TCCEEEEEEEEESSCSS--------CTTCEEEEEESTTT-----TSCEEEEEEEEEC---CCCSEEEEEEECBCCC---
T ss_pred             -ccccccceeeeeCCCCC--------eeEEEEEEEecCCC-----CCCceeEEEEccCCCccCCCEEEEEEecCCCCccc
Confidence             68899999999999994        99999999999943     7999999999874    2689999999988765  


Q ss_pred             ----------CceeeeeeeHHHHHHHhccccccc--------cCCCCceeeccCCCCCCCCCCCCCCCCCCCCccccee-
Q psy10772        136 ----------MGSAICSFSIEDIERAFVGKFKEQ--------ATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNF-  196 (378)
Q Consensus       136 ----------~~SAVC~ysl~dI~~~F~g~f~~~--------~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~f-  196 (378)
                                .+||||+|+|++|+++|+|+|+++        ++....|++       +||||.|++.+.+.   ..+| 
T Consensus       291 ~~~~~~~~p~~~SAVC~f~l~~I~~~f~~~~~~Cy~~~~~~~~~~~~~~~p-------~~~~~~C~~~~~~~---~~~f~  360 (528)
T 3ol2_B          291 RPPSAAAGASGASALCAFPLDEVDRLANRTRDACYTREGRAEDGTEVAYIE-------YDVNSDCAQLPVDT---LDAYP  360 (528)
T ss_dssp             --CCBCCGGGCCEEEEEEEHHHHHHHHHHHHHHHHHSTTTCSSSCCCEEEC-------TTCSCCCCCCCTTH---HHHCT
T ss_pred             cccccccCCCCccEEEEEEHHHHHHHHhhhhhhhhccccccccCCccccee-------cCCCCCCCCCCccc---ccccc
Confidence                      789999999999999999997641        223456754       57999999876432   2334 


Q ss_pred             ----eccccCcccccccCCCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEe
Q psy10772        197 ----IRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVK  258 (378)
Q Consensus       197 ----i~~hpLm~~~V~P~~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~  258 (378)
                          ...||||++  .|+.++|+|++.+.+||+||||++        ..|+|+||||++|+||||-
T Consensus       361 Cg~~~~~~pL~~~--~p~~~~Pll~~~~~~lT~IaVd~~--------~g~tV~FlGT~~G~l~Kv~  416 (528)
T 3ol2_B          361 CGSDHTPSPMASR--VPLEATPILEWPGIQLTAVAVTME--------DGHTIAFLGDSQGQLHRVY  416 (528)
T ss_dssp             TCCTTSCCSEEES--SCEECCCSEEETTCCEEEEEEEEE--------TTEEEEEEEETTSEEEEEE
T ss_pred             ccccCcCCccccc--ccccccceEEecCCceEEEEEEee--------cCeEEEEEECCCCeEEEEE
Confidence                247999987  499999999999999999999985        3499999999999999993

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A

Probab=100.00  E-value=3.1e-48  Score=411.21  Aligned_cols=223  Identities=18%  Similarity=0.307  Sum_probs=188.6

Q ss_pred             ccCeEEEEEccccceee---eeecccccc------------------------------CCCCCceEEEEEeCCEEEEEE
Q psy10772          6 THRSLYVASDERIKQIA---LVMCAHRYD------------------------------NCLQPDFVGSYDIGKYVFFFF   52 (378)
Q Consensus         6 ~~~~l~v~~~~~~~~~~---~~~rt~~~d------------------------------s~~~p~FV~sf~~~d~VYFfF   52 (378)
                      ...+||||+++++++.+   .++|..+-+                              +.+.++||++|+.|+||||||
T Consensus       147 ~~~~l~Vg~~~~~~~~~~p~ISsR~L~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~s~~~~y~i~fV~aF~~~~fVYFlf  226 (681)
T 3oky_A          147 EDGKLFIGTAVDGKQDYFPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFASGGFVYFLT  226 (681)
T ss_dssp             CCCEEEEEECCTTCTTTSCSEEEEECCSSTTCTTTTCBSCCCSSCCSEECCCHHHHHHSTTCCCEEEEEEEETTEEEEEE
T ss_pred             CceeEEEEeecCCCCCCCceeEEeecccccccccccccccccccccceeeeeccccccccccccceEEEEEcCCEEEEEE
Confidence            34699999999888633   343333210                              126799999999999999999


Q ss_pred             Eecccccc-----ccCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeec---------
Q psy10772         53 RETAVEYI-----NCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVP---------  118 (378)
Q Consensus        53 ~E~a~e~~-----~~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~---------  118 (378)
                      +|++.+..     ..++.++||||||||+|.        +||||+||||+|+.+|.   +||+|||||+++         
T Consensus       227 ~q~~~~~~~~~~~~~~~~~~SRVaRvCk~D~--------~wtSylka~L~C~~~g~---~fn~lQaa~~~~pg~~LA~~l  295 (681)
T 3oky_A          227 VQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTRAGV---EYRLLQAAYLAKPGEALAQAF  295 (681)
T ss_dssp             EEECCC----------CCEEEEEEEEESSCT--------TCTTCEEEEEEEEETTE---EECEEEEEEEECCCHHHHHHH
T ss_pred             EeecccccccccccccceeeEEEEEecCCCC--------CeeEEEEEEEecCCCCc---CCCceeEEEeccCcchhhhhc
Confidence            99988752     234689999999999996        59999999999999864   799999999874         


Q ss_pred             ---CCCcEEEEEEecccC----CCCceeeeeeeHHHHHHHhccc----cccccCCCCceeeccCCCCCCCCCCCCCCCCC
Q psy10772        119 ---GDDTKFYGVFTTSTT----GLMGSAICSFSIEDIERAFVGK----FKEQATSTSAWLPVLSSRVPEPRPGQCVNDTE  187 (378)
Q Consensus       119 ---~~~~~ly~vFtt~~~----~~~~SAVC~ysl~dI~~~F~g~----f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~  187 (378)
                         .++++|||||+++++    ++++||||+|+|+||+++|++.    |+++...+..|+.        |+|+.|++.+.
T Consensus       296 g~~~~~~vlygVFs~~~~~~~~~~~~SAVCaF~l~~I~~~f~~~~~~Cy~~~~~~~~~w~~--------~~~~~C~~~~~  367 (681)
T 3oky_A          296 NISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLL--------GKDVQCTKAPV  367 (681)
T ss_dssp             TCCTTSCEEEEEEESBSSCSSSCCSCEEEEEEEHHHHHHHHHHHHHHHHTTCSBCCCHHHH--------SSCCBCCCCCC
T ss_pred             ccCccCCEEEEEEecCCcCCCCCCCceEEEEEEHHHHHHHHhhhhhhhhcCCCCCCccccc--------CCCCCCcCCCc
Confidence               247899999999763    5679999999999999999987    8888777888962        58899999988


Q ss_pred             CCCcccceeeccccCcccccccCCCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        188 TLPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       188 ~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      ++||++++|++.||||+.  .|+.++|||++.+.+||+|||+.        .++|+|+||||++|+||||
T Consensus       368 ~~~d~~c~~~~~~pL~~~--~pi~~~Pll~~~~~~lT~VaV~~--------~~~~tVlFLGT~~G~l~Kv  427 (681)
T 3oky_A          368 PIDDNFCGLDINQPLGGS--TPVEGLTLYTTSRDRLTSVASYV--------YNGYSVVFVGTKSGKLKKI  427 (681)
T ss_dssp             CCCTTCCCCSSSCSBCCS--SCEECEEEEEESSSCBCCCEEEE--------ETTEEEEEEEBTTSEEEEE
T ss_pred             CCCccccccccccccccc--ccccccceEEecCcceEEEEEEe--------cCceEEEEEECCCceEEEE
Confidence            999999999999999986  58999999999989999999997        3789999999999999998

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.3e-47  Score=394.25  Aligned_cols=231  Identities=19%  Similarity=0.232  Sum_probs=186.5

Q ss_pred             CeEEEEEccccceee------eeeccccccC------------------CCCCceEEEEEeCCEEEEEEEeccccccccC
Q psy10772          8 RSLYVASDERIKQIA------LVMCAHRYDN------------------CLQPDFVGSYDIGKYVFFFFRETAVEYINCG   63 (378)
Q Consensus         8 ~~l~v~~~~~~~~~~------~~~rt~~~ds------------------~~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~   63 (378)
                      +.||||+..+....+      .++|+...+.                  .++++||++|+.|+||||||+|.+.+. .++
T Consensus       154 ~~Lyvgt~~~~~~~~~~~~rsis~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fV~~F~~~~~vYF~f~e~~~~~-~~~  232 (527)
T 4fww_A          154 SYFYVASSLDAAVAASFSPRSVSIRRLKADASGFAPGFVALSVLPKHLVSYSIEYVHSFHTGAFVYFLTVQPASVT-DDP  232 (527)
T ss_dssp             EEEEEEECCCHHHHSSSCCCSEEEEEBCTTSSCBCTTCEEECCCHHHHTTCCCEEEEEEEETTEEEEEEEEESSTT-SCT
T ss_pred             ceEEEeeecccCCCCCccccccccccccccccccccceeEEEecccccccCCCceEeeeecCCEEEEEEEEEcccc-CCC
Confidence            569999998765432      3445543222                  156899999999999999999999776 468


Q ss_pred             ceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCC--------CcccceeeeEEeec------------CCCcE
Q psy10772         64 KSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEF--------PFYFNEIQDIYKVP------------GDDTK  123 (378)
Q Consensus        64 ~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~--------~~~fn~lq~v~~~~------------~~~~~  123 (378)
                      +.++||||||||||.|        |+||+|+||+|+.++..        .++||+|||||+.+            .++++
T Consensus       233 ~~~~SRvaRVCk~D~~--------~~Sy~e~~L~C~~~~~~~~~~~~~~~~~yn~lQ~a~~~~~g~~La~~l~~~~~~~v  304 (527)
T 4fww_A          233 SALHTRLARLSATEPE--------LGDYRELVLDCRFAPKLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEV  304 (527)
T ss_dssp             TSEEEEEEEEESSSSC--------CTTCEEEEEEEEECC----------CEEECEEEEEEEEECCHHHHHHHTSCTTCEE
T ss_pred             cccceeeeEEcccCCC--------cceEEEEEEEeeccccccccccccCCcccceeeeEeecCccchhhhhcccCCCCCE
Confidence            8999999999999998        99999999999987542        45699999999864            24789


Q ss_pred             EEEEEecccCC----CCceeeeeeeHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeecc
Q psy10772        124 FYGVFTTSTTG----LMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRS  199 (378)
Q Consensus       124 ly~vFtt~~~~----~~~SAVC~ysl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~  199 (378)
                      |||||+++++.    +++||||+|+|+||+++|+|+|+++......|.. +.+.+|.|||+.|.+.+...++....+++.
T Consensus       305 ly~vFs~~~~~~~~~~~~SAvC~f~m~~I~~~F~~~~~~c~~~~~~~~~-~~~~~~~~~p~~c~~~~~~~~~~~~~~~~~  383 (527)
T 4fww_A          305 LFGVFVTGKDGGPGVGPNSVVCAFPIDLLDTLIDEGVERCCESPVHPGL-RRGLDFFQSPSFCPNPPGLEALSPNTSCRH  383 (527)
T ss_dssp             EEEEEECCC----CCSCSCEEEEEEHHHHHHHHHHHHHHHHSSSCCTTC-BCCCTTTSCCCBTTSCTTCSSCCTTCCGGG
T ss_pred             EEEEEeCccCCCCCCCCccEEEEEEHHHHHHHHHhhhhhcccCCCCCCc-eeccCCCCCCCcCcCCCcccccccCccccc
Confidence            99999987643    4569999999999999999998876555556643 467889999999999887778888889999


Q ss_pred             ccCcccccccCCCceeEE--ecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEe
Q psy10772        200 HPLMDEAVAHRDNKPVFY--RRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVK  258 (378)
Q Consensus       200 hpLm~~~V~P~~~~Pll~--~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~  258 (378)
                      ||||...+.|  +.|++.  ..+.+||+|+||++        ++|||+||||++|+||||.
T Consensus       384 ~pl~~~~~~~--~~~~~~~~~~~~~~T~iav~~~--------~~~tV~FlGT~~G~l~Kv~  434 (527)
T 4fww_A          384 FPLLVSSSFS--RVDLFNGLLGPVQVTALYVTRL--------DNVTVAHMGTMDGRILQVE  434 (527)
T ss_dssp             SCEECSSCEE--EECTTTTTTTTCCEEEEEEEEE--------TTEEEEEEEETTSEEEEEE
T ss_pred             CCccccCccc--CcccccccCCceEEEEEEEecc--------CCEEEEEEECCCCeEEEEE
Confidence            9999886544  445554  35688999999984        6799999999999999993

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=100.00  E-value=1.4e-45  Score=395.36  Aligned_cols=196  Identities=17%  Similarity=0.286  Sum_probs=148.6

Q ss_pred             CCCceEEEEEeCCEEEEEEEeccccccccCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCC------CCcc
Q psy10772         34 LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE------FPFY  107 (378)
Q Consensus        34 ~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~------~~~~  107 (378)
                      ++|+||++|..|+||||||+|.+.+.   ++.++||||||||+|.+        ||||+||||+|+.||+      .+++
T Consensus       224 ~~~~fV~~f~~~~~vYF~f~e~~~~~---~~~~~SRvaRvCk~D~~--------wtSflka~L~Cs~~~~~~~r~~~~~~  292 (727)
T 2uzx_B          224 YPIKYVHAFESNNFIYFLTVQRETLD---AQTFHTRIIRFCSINSG--------LHSYMEMPLECILTEKRKKRSTKKEV  292 (727)
T ss_dssp             SCEEEEEEEEETTEEEEEEEEBSSTT---CSSBCCEEEEECCSSSC--------CCSCEEEEEEEEEC---------CEE
T ss_pred             cCCCceeeeecCCEEEEEEeeccccc---cccceeEEEEEecCCCC--------eeEEEEEEEEecCCCcccccccCCcC
Confidence            68999999999999999999987643   58899999999999995        9999999999999975      4679


Q ss_pred             cceeeeEEeec------------CCCcEEEEEEeccc----CCCCceeeeeeeHHHHHHHhccccccccCCCCceeeccC
Q psy10772        108 FNEIQDIYKVP------------GDDTKFYGVFTTST----TGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLS  171 (378)
Q Consensus       108 fn~lq~v~~~~------------~~~~~ly~vFtt~~----~~~~~SAVC~ysl~dI~~~F~g~f~~~~~~~~~w~~~~~  171 (378)
                      ||+|||+|+++            .++++|||||++++    +++++||||+|+|+||+++|+|+|+++....+.|.+   
T Consensus       293 fn~lQa~~~~~~g~~La~~l~i~~~~~vlygVFs~~~~~~~~~~~~SAvC~f~l~~I~~~F~~~~~~~~~~~~~~~~---  369 (727)
T 2uzx_B          293 FNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHFY---  369 (727)
T ss_dssp             ECEEEEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECTTSSCEEEEEEEEEEEHHHHHHHHTCC----CEECCHHHH---
T ss_pred             cCceeEEeecCCchhhhhhccCCCCCCEEEEEEcCCccccCCCCCCcEEEEEEHHHHHHHHhhhHhhcCcccccccc---
Confidence            99999999974            24789999999986    678899999999999999999999987666677863   


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccee-eccccCcccccccCCCceeEEe--cCCcceEEEEEEEEeeeecCCCeEEEEEEE
Q psy10772        172 SRVPEPRPGQCVNDTETLPDSVLNF-IRSHPLMDEAVAHRDNKPVFYR--RDLLFTHLVVDVVQYEVFGTTSEYIVYFAA  248 (378)
Q Consensus       172 ~~vP~prpg~C~~~s~~~pd~~l~f-i~~hpLm~~~V~P~~~~Pll~~--~~~~~T~IaVd~v~~~~~~~~~~ytV~flG  248 (378)
                          .||||.|.+++....+..+.. ++.||||..  +|+.+.|+|.+  .+++||+|||+++        ++|||+|||
T Consensus       370 ----~p~p~~C~~~~~~~~~~~~~~~~~~~pl~~~--~~l~~~~l~~~~~~~~~lT~iav~~~--------~~~tV~flG  435 (727)
T 2uzx_B          370 ----GPNHEHCFNRTLLRNSSGCEARRDEYRTEFT--TALQRVDLFMGQFSEVLLTSISTFIK--------GDLTIANLG  435 (727)
T ss_dssp             ----CCC--------------------CCCCEEES--SCEEEECTTTTTTTTSCEEEEEEEEE--------TTEEEEEEE
T ss_pred             ----CCCCCcCCCCCcccccCcCcccccccccccc--CcccCccceeecccceeEEEEEEEec--------CCEEEEEEE
Confidence                478999998754211111111 367899854  46677777765  4578999999984        789999999


Q ss_pred             CCCeeEEEE
Q psy10772        249 TTTLRTVFV  257 (378)
Q Consensus       249 T~~G~v~~V  257 (378)
                      |++|+||||
T Consensus       436 T~~G~l~Kv  444 (727)
T 2uzx_B          436 TSEGRFMQV  444 (727)
T ss_dssp             ETTSCEEEE
T ss_pred             cCCCeEEEE
Confidence            999999999

>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*

Probab=100.00  E-value=6.2e-33  Score=279.47  Aligned_cols=195  Identities=14%  Similarity=0.158  Sum_probs=152.9

Q ss_pred             cCeEEEEEccc-------------cceee------------eeeccccccCC--C---CC-ceEEEEEeCCEEEEEEEec
Q psy10772          7 HRSLYVASDER-------------IKQIA------------LVMCAHRYDNC--L---QP-DFVGSYDIGKYVFFFFRET   55 (378)
Q Consensus         7 ~~~l~v~~~~~-------------~~~~~------------~~~rt~~~ds~--~---~p-~FV~sf~~~d~VYFfF~E~   55 (378)
                      .++||||++.+             ++..+            +.++|+++++.  +   ++ +||.+|+.+++|||+|.+-
T Consensus       138 ~~~lfvg~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~r~l~~~~~~~~~~~~~~~~~~fV~af~~~~~vyf~~y~y  217 (476)
T 3nvn_B          138 NNRWYLAVAATYVLPEPETASRCNPAASDHDTAIALKDTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPYYPY  217 (476)
T ss_dssp             TTEEEEEEEECCCCCCCCTTTCCCCCGGGTTEEEEEEESSSGGGCCCTTSEEEBCTTSCCEEECCCEECSSEEEEEEEEE
T ss_pred             CceeEEEecccccccccccccccCCCccccccceeeccCcccccchhhhcceeeccCCCCceeeeehhcCceeEEEEEee
Confidence            46999999998             55544            23566666655  3   67 9999999999999999875


Q ss_pred             cccccccCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecCCCcEEEEEEeccc---
Q psy10772         56 AVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPGDDTKFYGVFTTST---  132 (378)
Q Consensus        56 a~e~~~~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~~~~~ly~vFtt~~---  132 (378)
                      .-..  ..-.++||||||||+|.        + +||+|++|+|+.++..  .||+||++.+. .+|++|||||+++.   
T Consensus       218 ~~~s--~~~~~~sriaRvCk~D~--------~-~sy~e~~L~C~~~~~~--~y~ll~slgi~-~~ddVLfaVFS~~~~~~  283 (476)
T 3nvn_B          218 NYTS--GAATGWPSMARIAQSTE--------V-LFQGQASLDCGHGHPD--GRRLLLSSSLV-EALDVWAGVFSAAAGEG  283 (476)
T ss_dssp             ETTT--TEECSCCEEEEEESSSS--------C-CEEEEEEECCCSSCSS--CCCEEEEEEEE-TTTTEEEEEEECCCCSS
T ss_pred             cccc--CCccceeeEEEEeecCC--------C-cEEEEEEEeccCCCCC--CcceEEecCcc-CCCCEEEEEEecCCCCc
Confidence            4221  11268999999999997        3 8999999999997543  39999999775 55679999999863   


Q ss_pred             ---CCCCceeeeeeeHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCCCCCCCcccceeeccccCccccccc
Q psy10772        133 ---TGLMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAH  209 (378)
Q Consensus       133 ---~~~~~SAVC~ysl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P  209 (378)
                         +++.+||||+|+|++|+++|..    +     .|...       .++..|..+             +||||   |+|
T Consensus       284 ~~~~p~~~SALC~F~L~~I~~~iqs----C-----~w~~~-------~~~~~Cg~~-------------n~PL~---vqP  331 (476)
T 3nvn_B          284 QERRSPTTTALCLFRMSEIQARAKR----V-----SWDFK-------TAESHCKEG-------------DQPER---VQP  331 (476)
T ss_dssp             SCSCCTTSEEEEEEEHHHHHHHCBC----C-----CSSBC-------CSSCCSSSS-------------CCCEE---ECC
T ss_pred             ccCCCCCCcEEEEEEHHHHHHHHhh----C-----Ccccc-------cCccccccC-------------CCcce---eec
Confidence               3678999999999999999632    2     57421       123346531             69999   789


Q ss_pred             CCCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEe
Q psy10772        210 RDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVK  258 (378)
Q Consensus       210 ~~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~  258 (378)
                      +.+.|||..   .+|+|+|++        .++|+|+||||++|+||||-
T Consensus       332 I~~~PL~~~---~LTsVav~v--------v~~~TVlFLGTd~G~L~KVv  369 (476)
T 3nvn_B          332 IASSTLIHS---DLTSVYGTV--------VMNRTVLFLGTGDGQLLKVI  369 (476)
T ss_dssp             CTTCCEEES---SEEEEEEEE--------SSSSEEEEEEETTSEEEEEE
T ss_pred             cCCCCeEec---CCceEEEEE--------eCCeEEEEEECCCceEEEEE
Confidence            999999973   599999998        47899999999999999993

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.05  E-value=3.9e-10  Score=88.11  Aligned_cols=76  Identities=21%  Similarity=0.343  Sum_probs=59.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|....|    .|.|+|+.++.+     |.  .++++.....|    |.|.+++.+|+|.|.|.+.|
T Consensus         4 t~v~~~~G~~v~l~C~vs~p----~p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   72 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSGP----GGPVRWYKDGER-----LA--SQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ   72 (84)
T ss_dssp             CCEEECTTSCEEEECCCSCC----STTCEEEETTEE-----CC--CCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT
T ss_pred             eEEEEecCCCEEEEEEECCC----CcEEEEEECCEE-----cc--ccccEEEeecCCeEEEEecCCCCcccEEEEEEECC
Confidence            46788999999999998543    358999998764     54  44554444344    99999999999999999987


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      + -++..|+|.+
T Consensus        73 ~-~~~a~l~V~e   83 (84)
T 2lu7_A           73 D-SRIFLVSVEE   83 (84)
T ss_dssp             T-CEEEEEEECC
T ss_pred             E-EEEEEEEEEC
Confidence            4 5788888864

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.02  E-value=7.5e-10  Score=87.82  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|....++    +.|+|++++.+     |.  .++++.+..+|    |.|.+++.+|+|.|.|.+.
T Consensus        12 ~~~~~v~~G~~v~l~C~v~~~~----~~v~W~k~g~~-----i~--~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T 1waa_A           12 LYGVEVFVGETAHFEIELSEPD----VHGQWKLKGQP-----LA--ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA   80 (93)
T ss_dssp             CCCEEEETTSCEEEEEEESSSS----CCCEEEETTEE-----CC--CBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred             CcceEEeCCCCEEEEEEECCCC----CeEEEEECCEE-----Cc--CCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence            4678899999999999986442    47999998764     43  44454444444    9999999999999999999


Q ss_pred             CeeeEEEeeeecc
Q psy10772        355 NTVLCTHNLTVDA  367 (378)
Q Consensus       355 ~~~l~~~~~~v~~  367 (378)
                      |. .++=.|+|.+
T Consensus        81 n~-~~sa~L~V~~   92 (93)
T 1waa_A           81 NT-KSAANLKVKE   92 (93)
T ss_dssp             TE-EEEEEEEEEC
T ss_pred             CC-cEEEEEEEEc
Confidence            74 4777787764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.98  E-value=6.8e-10  Score=88.06  Aligned_cols=72  Identities=24%  Similarity=0.537  Sum_probs=55.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCCee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      +.+.+|+++.|+|.+..|    .|.|+|+.++.+     |.  .++++.+..+|    |.|.+++.+|+|.|.|.+.|+ 
T Consensus        16 v~~~~g~~v~l~C~v~~p----~~~v~W~k~g~~-----i~--~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDRE----DAPVRWYKDGQE-----VE--ESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE-   83 (91)
T ss_dssp             EECCTTCCEEEEEECSCT----TSCCEEEETTSC-----CC--CCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC-
T ss_pred             EEEECCCcEEEEEEECCC----CcEEEEEECCEE-----ee--eeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce-
Confidence            456789999999998543    247999998875     54  44444444344    999999999999999999864 


Q ss_pred             eEEEeeee
Q psy10772        358 LCTHNLTV  365 (378)
Q Consensus       358 l~~~~~~v  365 (378)
                      -++..|+|
T Consensus        84 ~~~~~ltV   91 (91)
T 2lvc_A           84 CAYFTVTI   91 (91)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            57777776

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.97  E-value=8.5e-10  Score=88.48  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|++++.+     |....+.++.....+    |.|.+++.+|+|.|.|.+.
T Consensus        12 p~~~~v~~G~~~~l~C~~~g~P~---p~v~W~k~g~~-----i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A           12 PSDISIDEGKVLTVACAFTGEPT---PEVTWSCGGRK-----IHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             CSEEEEETTSEEEEEEEEEEESC---CEEEEEETTEE-----CCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecC---CEEEEEECceE-----eeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            45688999999999999876544   68999998764     432122233333222    9999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|.+
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            7   667888888864

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.96  E-value=7.6e-10  Score=90.05  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=61.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|++++.+     |.  .++++....+    -|.|.+++.+|+|.|.|.+.
T Consensus        20 p~~~~v~~G~~~~l~C~~~G~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           20 PRPVRVVSGAEAELKCVVLGEPP---PVVVWEKGGQQ-----LA--ASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEEEEecC---CEEEEEECccc-----cc--ceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            46688999999999999876544   68999998764     43  4444443322    39999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|+|.+
T Consensus        90 N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           90 NAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEc
Confidence            7   667788888875

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.1e-09  Score=86.59  Aligned_cols=86  Identities=20%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+.+|+++.|.|.....+.  ++.+.|+.++.+     |.  .++++....+|    |.|.+++.+|+|.|.|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~v~~~~~--~~~v~W~k~g~~-----i~--~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   84 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVLSHESA--SDPAMWTVGGKT-----VG--SSSRFQATRQGRKYILVVREAAPSDAGEVVFSV   84 (104)
T ss_dssp             CCCCEEEESSCCEEEEEECSSCCC--SSCBCCBSSSSB-----CS--BCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE
T ss_pred             cCCCcEEcCCCcEEEEEEEcCCCC--CceeEEEECCEE-----CC--CCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE
Confidence            346788999999999999865432  235999988765     43  34444444444    999999999999999999


Q ss_pred             CCeeeEEEeeeecccccCCC
Q psy10772        354 GNTVLCTHNLTVDAHSNVAD  373 (378)
Q Consensus       354 ~~~~l~~~~~~v~~~~c~~~  373 (378)
                      .|. .++-.|+|.+.+-..+
T Consensus        85 ~~~-~~~a~L~V~~~p~~~~  103 (104)
T 2eny_A           85 RGL-TSKASLIVRERSGPSS  103 (104)
T ss_dssp             TTE-EEEECEEEECCCSSCC
T ss_pred             CCe-eEEEEEEEeCCCcCCC
Confidence            864 5888999988665443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=4.2e-09  Score=84.37  Aligned_cols=79  Identities=24%  Similarity=0.311  Sum_probs=60.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+.+|+++.|.|.+ .|    .|.|+|+.++.+     |.  .++++.+..+|    |.|.+++.+|+|.|.|.+
T Consensus        13 ~~~~~~v~~G~~v~l~C~v-~p----~p~v~W~k~g~~-----l~--~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a   80 (100)
T 2yuz_A           13 PLTDQTVNLGKEICLKCEI-SE----NIPGKWTKNGLP-----VQ--ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAP   80 (100)
T ss_dssp             CCCCEEEETTSCCCEEEEC-SS----CCCEEEEETTEE-----CC--CCSSEEEEECSSEEEEEESSCCGGGCSEEEEEE
T ss_pred             cCCceEEcCCCCEEEEEEe-CC----CCeEEEEECCEE-----CC--CCCcEEEEEeCCEEEEEECCCChhhCEEEEEEE
Confidence            3567889999999999998 33    258999998764     43  44454444444    999999999999999999


Q ss_pred             CCe-eeEEEeeeeccc
Q psy10772        354 GNT-VLCTHNLTVDAH  368 (378)
Q Consensus       354 ~~~-~l~~~~~~v~~~  368 (378)
                      .|. .-++-.|+|.+.
T Consensus        81 ~N~~~~~~a~L~V~~~   96 (100)
T 2yuz_A           81 DAYNVTLPAKVHVISG   96 (100)
T ss_dssp             SSSCCCEEEEEEEECC
T ss_pred             cCCCeeEEEEEEEeCC
Confidence            985 346777888754

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.85  E-value=7.2e-09  Score=81.32  Aligned_cols=76  Identities=20%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|.. +.+   .+.|+|+.++.+     |.  .+.++....+|    |.|.+++..|+|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p---~~~v~W~k~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ag   83 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERA---GVKVRWQRGGSD-----IS--ASNKYGLATEGTRHTLTVREVGPADQGSYAVIAG   83 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSS---SCCCEEECSSSE-----EC--SSTTCEEEEETTEEEEEESSCCTTCCSEEEEEET
T ss_pred             CCcEEEeCCCcEEEEEEe-CCC---CCeEEEEECCEE-----CC--CCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEEC
Confidence            467889999999999998 333   358999988754     43  34444444444    9999999999999999996


Q ss_pred             CeeeEEEeeeec
Q psy10772        355 NTVLCTHNLTVD  366 (378)
Q Consensus       355 ~~~l~~~~~~v~  366 (378)
                      + .-++..|+|.
T Consensus        84 ~-~~~~~~l~V~   94 (95)
T 2k1m_A           84 S-SKVKFDLKVI   94 (95)
T ss_dssp             T-EEEEEEEEEE
T ss_pred             C-ceEEEEEEEe
Confidence            5 5567777775

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.84  E-value=7.1e-09  Score=81.32  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=60.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.+.|+.++.+     +......++...++|   |.|.+++..|+|.|.|.+.|
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~---p~v~W~~~g~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPA---PDVSWYLNGRT-----VQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESC---CEEEEEETTEE-----ECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCC---CEEEEEECCEE-----CcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            35678899999999999875443   58999988654     431122234444554   99999999999999999987


Q ss_pred             ---eeeEEEeeeeccc
Q psy10772        356 ---TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ---~~l~~~~~~v~~~  368 (378)
                         ..-++..|.|.+.
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence               5667777777654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.83  E-value=4.6e-09  Score=84.04  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|.....+.    +++|+.++.+     |.  .++++....+|    |.|.+++.+|+|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~~----~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A           15 IADLTVKAAEQAVFKCEVSDEKV----TGKWYKNGVE-----VR--PSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             CCCEEEESSCCEECCCEESCSSC----EEEEEESSCB-----CC--CCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CCCeEEeCCCeEEEEEEEcCCCc----ceEEEcCCEE-----Cc--CCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence            46688999999999999875543    4999998764     43  34444444344    9999999999999999998


Q ss_pred             Ce-eeEEEeeeecccccCCCCC
Q psy10772        355 NT-VLCTHNLTVDAHSNVADAP  375 (378)
Q Consensus       355 ~~-~l~~~~~~v~~~~c~~~~~  375 (378)
                      |. .-++..|+|.+.....|.+
T Consensus        84 n~~~~~~~~l~V~~~~~~~p~s  105 (106)
T 2dlt_A           84 GYALSLSAKLNFLEIKVSGPSS  105 (106)
T ss_dssp             TSCCCCCBCEEEECCCCCSCCC
T ss_pred             cCCceEEEEEEEEEEeCCCCCC
Confidence            84 3466677777777666653

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.82  E-value=1e-08  Score=86.81  Aligned_cols=96  Identities=18%  Similarity=0.258  Sum_probs=67.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc------cCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK------DKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~------~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.++.|.|+|+.+..      +..+.+++...+.+-...+..|.|.+|+.+|+|.|.|.
T Consensus        14 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Ce   93 (126)
T 2dav_A           14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   93 (126)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEE
Confidence            466889999999999998765445668999988631      11222332100111112346799999999999999999


Q ss_pred             eCC---eeeEEEeeeecccccCCCC
Q psy10772        353 LGN---TVLCTHNLTVDAHSNVADA  374 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~~c~~~~  374 (378)
                      +.|   ..-|..+|+|....-..|+
T Consensus        94 vsn~~g~~~~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           94 VTYKDKFDSCSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EECSSCEEEECCEEEEECCCCSCCC
T ss_pred             EEeCCCcEEEEEEEEEEecCCCCCe
Confidence            887   6678899999985555554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=9.1e-09  Score=86.06  Aligned_cols=90  Identities=18%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc------CceeeEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD------KGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~------~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.++.|+|+|+.+..-      ..+.+++...+.+-......|.|.+|+.+|+|.|.|.
T Consensus        19 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce   98 (118)
T 2edn_A           19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE   98 (118)
T ss_dssp             CCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence            4668899999999999987654456689999886311      1122222111111112245699999999999999999


Q ss_pred             eCC---eeeEEEeeeeccc
Q psy10772        353 LGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~  368 (378)
                      +.|   ..-|..+|+|.+.
T Consensus        99 vsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           99 VKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EECSSCEEEEEECCEEECC
T ss_pred             EEEcCCcEEEEEEEEEEcC
Confidence            887   7779999999864

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.81  E-value=8.1e-09  Score=81.60  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++.+     +.  .+.++.....    -|.|.+++.+|+|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPT---AEVKWYHNGVE-----LQ--ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESC---CEEEEEETTEE-----CC--CCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCC---CEEEEEECCEE-----CC--CCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            35678899999999999875544   68999988754     32  3333333322    29999999999999999998


Q ss_pred             C---eeeEEEeeeeccc
Q psy10772        355 N---TVLCTHNLTVDAH  368 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~  368 (378)
                      |   ..-++..|.|.+.
T Consensus        85 N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           85 NYKGEASDYATLDVTGG  101 (103)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             eCCCcEEEEEEEEEECC
Confidence            7   5677778877653

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.8e-08  Score=83.29  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc----------ceEeecCc----eEEeeecC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK----------FIRTVDGG----LVIMAVEE  343 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~----------~~~~~~~G----LlI~~v~~  343 (378)
                      ..+.+.+.+|+++.|+|.+..     .|.++|++|+.+     |.  .++          ++.+..+|    |+|.+++.
T Consensus        14 ~l~d~~v~eG~~a~f~C~vs~-----~p~v~W~knG~~-----l~--~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~   81 (112)
T 2e6q_A           14 GLEDVQVYDGEDAVFSLDLST-----IIQGTWFLNGEE-----LK--SNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH   81 (112)
T ss_dssp             CCCCEEEETTCEEEEEEEESS-----CCCCEEEESSCB-----CC--SSCCCTTSCTTSCEEEECCBTTEEEEEEESCCS
T ss_pred             CCCCeEEcCCCcEEEEEEECC-----CCeEEEEECCEE-----Cc--cCcccccccccccEEEEEeCCcEEEEEECCCCH
Confidence            356788999999999999963     257999999876     54  443          66665555    99999999


Q ss_pred             CCCeEEEEEeCCeeeEEEeeeeccc
Q psy10772        344 LDAGKYDCWLGNTVLCTHNLTVDAH  368 (378)
Q Consensus       344 ~DsG~Y~C~~~~~~l~~~~~~v~~~  368 (378)
                      +|+|.|.|..-+..-.+=.|+|.+.
T Consensus        82 ~D~G~Y~~~~~~~~~ssA~L~V~~~  106 (112)
T 2e6q_A           82 QDSGALVGFSCPGVQDSAALTIQES  106 (112)
T ss_dssp             TTCSEEEEEEETTEEEEEEEEEECS
T ss_pred             HHCccEEEEEECCeeEEEEEEEeCC
Confidence            9999997743344556778888764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.79  E-value=1.9e-08  Score=81.34  Aligned_cols=81  Identities=25%  Similarity=0.318  Sum_probs=61.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++.+     |.  .+.++...    ..-|.|.+++.+|+|.|.|.+.
T Consensus        14 ~~~~~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A           14 PEDQKVRAGESVELFGKVTGTQP---ITCTWMKFRKQ-----IQ--ESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSS---CEEEEEESSSB-----CC--CSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCeEEeCCCeEEEEEEEEcCCC---CEEEEEECCEE-----Cc--CCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            45678899999999999976544   68999998764     32  23333332    2349999999999999999998


Q ss_pred             C---eeeEEEeeeecccc
Q psy10772        355 N---TVLCTHNLTVDAHS  369 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~  369 (378)
                      |   ..-+...|.|.+.+
T Consensus        84 N~~g~~~~~~~l~V~~~p  101 (114)
T 2cqv_A           84 NKLGSRQAQVNLTVVDKP  101 (114)
T ss_dssp             CSSCEEECCEEEEEECSC
T ss_pred             ECCCcEEEEEEEEEECCC
Confidence            7   55667788877544

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.2e-08  Score=80.76  Aligned_cols=79  Identities=29%  Similarity=0.421  Sum_probs=60.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|....|    .+.|.|+.++..     |.  .+.++....+|    |.|.+++.+|+|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~----~~~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (103)
T 2edf_A           15 LEDQWVAPGEDVELRCELSRA----GTPVHWLKDRKA-----IR--KSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE   83 (103)
T ss_dssp             CCCEEECTTSCEEECCEESSS----SCCCCEEESSCB-----CC--CSSSEEEEEETTEEEEEESSCCTTTCSEEEEECS
T ss_pred             CCccEEcCCCCEEEEEEEeCC----CCcEEEEECCEE-----cc--CCCCEEEEECCCEEEEEECCCCcccCEEEEEEEc
Confidence            456788999999999999753    247999988764     32  33444444344    9999999999999999999


Q ss_pred             CeeeEEEeeeecccc
Q psy10772        355 NTVLCTHNLTVDAHS  369 (378)
Q Consensus       355 ~~~l~~~~~~v~~~~  369 (378)
                      | .-.+..|+|.+.+
T Consensus        84 n-~~~~~~l~V~~~p   97 (103)
T 2edf_A           84 A-SKSTASLHVEEKA   97 (103)
T ss_dssp             S-CEEEEEEEECCCS
T ss_pred             c-CCcEEEEEEeCCC
Confidence            8 5677888887643

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.78  E-value=2.4e-08  Score=78.96  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=57.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCCee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      +.+.+|+++.|.|....    +.+.|+|++++.+     |.  .+.++....+|    |.|.+++.+|+|.|.|.+. ..
T Consensus        18 ~~v~~G~~v~l~C~~~~----p~~~v~W~k~g~~-----i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ag-~~   85 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELAD----PKLEVKWYKNGQE-----IR--PSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAG-DE   85 (100)
T ss_dssp             EEECTTEEEEEEEEESC----TTSCEEEEESSCB-----CC--CBTTEEEEEETTEEEEEEEEECTTTCCEEEEEET-TE
T ss_pred             cEEcCCCcEEEEEEecC----CCceEEEEECCEE-----CC--CCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEEC-Cc
Confidence            56779999999999862    2358999998765     43  33344433333    9999999999999999995 56


Q ss_pred             eEEEeeeeccc
Q psy10772        358 LCTHNLTVDAH  368 (378)
Q Consensus       358 l~~~~~~v~~~  368 (378)
                      -++..|+|.+.
T Consensus        86 ~~~~~l~V~~~   96 (100)
T 2yuv_A           86 KCSTELFVRSG   96 (100)
T ss_dssp             EEEEEEEECCS
T ss_pred             eEEEEEEEecC
Confidence            67888888864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.78  E-value=1.2e-08  Score=79.83  Aligned_cols=79  Identities=24%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCc---eEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGG---LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~G---LlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++.+     +.  .+.++..  ...+   |.|.+++.+|+|.|.|.+
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPD---PECEWYKNGVK-----IE--RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCC---CEEEEEECCEE-----CC--CCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            45678899999999999875544   68999988754     32  2233221  2333   999999999999999999


Q ss_pred             CC---eeeEEEeeeecc
Q psy10772        354 GN---TVLCTHNLTVDA  367 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~  367 (378)
                      .|   ...++..|.|.+
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCcEEEEEEEEEec
Confidence            87   666777787764

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.76  E-value=2.8e-08  Score=78.94  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=59.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc--ceEeec----CceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK--FIRTVD----GGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~--~~~~~~----~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|....+.    +.|+|+.++.+     |.  .+.  ++....    .-|.|.+++.+|+|.|.|.
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~~----~~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   82 (103)
T 1x44_A           14 LEDTTAYCGERVELECEVSEDD----ANVKWFKNGEE-----II--PGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM   82 (103)
T ss_dssp             CCCEEEETTEEEEEEEECSSSS----CCCEEEETTEE-----CC--CSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEE
T ss_pred             CCCEEEECCCCEEEEEEecCCC----CeEEEEECCEE-----CC--CCCceEEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence            4567899999999999986532    58999998754     33  232  223322    3499999999999999999


Q ss_pred             eCCeeeEEEeeeecccc
Q psy10772        353 LGNTVLCTHNLTVDAHS  369 (378)
Q Consensus       353 ~~~~~l~~~~~~v~~~~  369 (378)
                      +.| .-++..|+|....
T Consensus        83 a~n-~~~~~~l~V~~~p   98 (103)
T 1x44_A           83 TTG-GQSSAKLSVDLKS   98 (103)
T ss_dssp             ETT-EEEEEEEEEECCC
T ss_pred             ECC-CcEEEEEEEeCCC
Confidence            998 5677788887643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=1.9e-08  Score=79.09  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++..     +.. .+.++... +.-|.|.+++.+|+|.|.|.+.|  
T Consensus        15 p~~~~v~~G~~~~l~C~~~g~p~---p~v~W~~~~~~-----~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A           15 PANQTLAVDGTALLKCKATGDPL---PVISWLKEGFT-----FPG-RDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             CCCEEEESSSEEEECCEEECSSC---CEEEEEESSSE-----ESS-SCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             cCCEEEcCCCcEEEEEEEEEcCC---CEEEEEECCEE-----CCC-CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            45678889999999999875544   57999998754     421 23333333 34499999999999999999987  


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       ..-++..|.|.+
T Consensus        86 g~~~~~~~l~V~~   98 (100)
T 2edj_A           86 GETSWSAVLDVTE   98 (100)
T ss_dssp             CCCBCCEEEEEES
T ss_pred             CCEEEEEEEEEec
Confidence             456667777764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.76  E-value=2e-08  Score=78.64  Aligned_cols=80  Identities=19%  Similarity=0.300  Sum_probs=60.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccC-CCCCCCCeEEEEecccCceeeEeeccCcceEe-ecC---ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLP-ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDG---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~-~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+. +.   |.|+|++++.+     +.  .+.++.. ..+   -|.|.+++.+|+|.|.|.+
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQS---TQVTWYFGVRQ-----LE--NSEKYEITYEDGVAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTT---CEEEEEETTEE-----CC--SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCC---CEEEEEECCEE-----Cc--CCCCEEEEEcCCeEEEEEecCChhhCeEEEEEE
Confidence            456789999999999998753 33   58999998653     32  3333332 233   4999999999999999999


Q ss_pred             CC---eeeEEEeeeeccc
Q psy10772        354 GN---TVLCTHNLTVDAH  368 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~~  368 (378)
                      .|   ...++..|.|.+.
T Consensus        78 ~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             ECSSCEEEEEEEEEETTT
T ss_pred             ECCCCeEeEEEEEEEEec
Confidence            87   6677778888754

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.76  E-value=1.4e-08  Score=79.50  Aligned_cols=80  Identities=29%  Similarity=0.391  Sum_probs=58.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.+.|+.++.+     +. ..+.++....+|    |.|.+++.+|+|.|.|.+.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~~~~-----~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPK---PVVSWLRNRQP-----VR-PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESC---CEEEEEETTEE-----CC-CBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCC---CEEEEEECCEE-----CC-CCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            34568899999999999875544   58999998754     32 122333333344    9999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|.+
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           83 NEYGARQCEARLEVRG   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCceeEEEEEEEEC
Confidence            7   556666777753

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.75  E-value=1.6e-08  Score=78.96  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC-c---eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG-G---LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~-G---LlI~~v~~~DsG~Y~C~~~  354 (378)
                      ...+.+.+|+++.|.|...+.+.   |.+.|+.++..     +.  .+.++....+ +   |.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   82 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPR---PTAIWTKDGKA-----IT--QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK   82 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESC---CEEEEEETTEE-----CC--SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCC---CEEEEEECCEE-----Cc--CCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence            34578899999999999875544   58999987653     32  3344333332 2   9999999999999999998


Q ss_pred             C---eeeEEEeeeec
Q psy10772        355 N---TVLCTHNLTVD  366 (378)
Q Consensus       355 ~---~~l~~~~~~v~  366 (378)
                      |   ..-++..|+|.
T Consensus        83 n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           83 NSAGSVSSSCKLTIK   97 (99)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEeEEEEEEEE
Confidence            7   55666677665

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=1.7e-08  Score=79.81  Aligned_cols=78  Identities=28%  Similarity=0.476  Sum_probs=58.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|... .+   .+.|+|+.++..     |.  .+.++....+|    |.|.+++.+|+|.|.|.+.
T Consensus        18 ~~~~~v~~G~~v~L~C~~~-~p---~~~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   86 (102)
T 2eo1_A           18 HREVQAEAGASATLSCEVA-QA---QTEVTWYKDGKK-----LS--SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG   86 (102)
T ss_dssp             CEEEEEETTCCEEECCBCS-CS---SSCCEEEETTEE-----CC--CCSSEEEEEETTEEEEEETTCCTTTCSCEEEEET
T ss_pred             cccEEEeCCCcEEEEEEec-CC---CCceEEEECCEE-----CC--CCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcC
Confidence            3567899999999999986 22   258999988754     32  33344443333    9999999999999999998


Q ss_pred             CeeeEEEeeeeccc
Q psy10772        355 NTVLCTHNLTVDAH  368 (378)
Q Consensus       355 ~~~l~~~~~~v~~~  368 (378)
                      +. -++..|+|.+.
T Consensus        87 ~~-~~~~~l~V~~p   99 (102)
T 2eo1_A           87 GQ-QLSFRLQVAGQ   99 (102)
T ss_dssp             TE-ECCEEEEEESC
T ss_pred             CC-cEEEEEEEeCC
Confidence            64 46788888753

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.4e-08  Score=79.24  Aligned_cols=76  Identities=20%  Similarity=0.378  Sum_probs=57.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCCee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      +.+.+|+++.|.|...+.+.   + |.|+.++..     |.  .+.++.....|    |.|.+++.+|+|.|.|.+.|. 
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~---~-v~W~k~g~~-----~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-   87 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDF---P-ATWYKDGQK-----VE--ESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV-   87 (104)
T ss_dssp             EEEESSSCEECCEECSSTTC---C-CEEEETTEE-----CC--CBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC-
T ss_pred             EEEeCCCcEEEEEEecCCCC---c-cEEeeCCEE-----CC--CCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc-
Confidence            78899999999999865443   4 899988754     32  23333333223    999999999999999999986 


Q ss_pred             eEEEeeeecccc
Q psy10772        358 LCTHNLTVDAHS  369 (378)
Q Consensus       358 l~~~~~~v~~~~  369 (378)
                      .....|+|.+.+
T Consensus        88 ~~~~~l~V~~~P   99 (104)
T 2e6p_A           88 SAFFGVTVQDPS   99 (104)
T ss_dssp             CCCEEEEEECCC
T ss_pred             eEEEEEEEcCCC
Confidence            557788887654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.74  E-value=2.9e-08  Score=77.59  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+.+|+++.|.|...+     .|.++|+.++.+     +.  .+.++......|.|.+++.+|+|.|.|.+.|   
T Consensus         8 p~~~~v~~G~~~~l~C~~~~-----~p~v~W~k~g~~-----~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD-----AAVISWTKDGVH-----LG--PNNRTVLIGEYLQIKGATPRDSGLYACTAARTVD   75 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT-----TCEEEEEETTEE-----EC--CCSSEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCcEEECCCCEEEEEEEeCC-----CCEEEEEECCEE-----CC--CCceEEEeCCEEEECcCCcccCEEEEEEEccCCC
Confidence            45678889999999999864     257999987653     43  4556666677899999999999999999987   


Q ss_pred             eeeEEEeeeeccc
Q psy10772        356 TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ~~l~~~~~~v~~~  368 (378)
                      ..-++..|.|.+.
T Consensus        76 ~~~~~~~l~V~~~   88 (95)
T 4hwu_A           76 SETWIFMVNVTDA   88 (95)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             cEEEEEEEEEeCC
Confidence            5667778877653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=7.9e-09  Score=82.62  Aligned_cols=84  Identities=26%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|.|++++..     +......++...++|   |.|.+++.+|+|.|.|.+.|
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~~~g~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKVSGLPT---PDLSWQLDGKP-----VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCEEEEESSSCBCCEEEEECSSC---CEEECBBSSSB-----CCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCcEEEeCCCEEEEEEEEEEcCC---CEEEEEECCEE-----CCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            45678999999999999875544   58999988754     321111223333444   99999999999999999987


Q ss_pred             ---eeeEEEeeeeccccc
Q psy10772        356 ---TVLCTHNLTVDAHSN  370 (378)
Q Consensus       356 ---~~l~~~~~~v~~~~c  370 (378)
                         ..-++..|.|.+.+-
T Consensus        88 ~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             SSCEEEECCEEEEECCCC
T ss_pred             CCCEEEEEEEEEEeCCCC
Confidence               667777888876543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.73  E-value=3.1e-08  Score=79.88  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|....+     |.|+|+.++.+     |.  .++++....+|    |.|.+++.+|+|.|.|.+ 
T Consensus        26 ~~~~~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-   92 (113)
T 2edh_A           26 LRNEEATEGATAVLRCELSKM-----APVEWWKGHET-----LR--DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC-   92 (113)
T ss_dssp             CCCCEECTTSCEEEEEEESSC-----CCCEEEESSSB-----CC--CSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE-
T ss_pred             CCceEEeCCCeEEEEEEECCC-----CcEEEEECCEE-----CC--CCCcEEEEECCCEEEEEECCCChhhCEEEEEEe-
Confidence            345678899999999998533     47999998764     43  44555555556    999999999999999999 


Q ss_pred             CeeeEEEeeeeccc
Q psy10772        355 NTVLCTHNLTVDAH  368 (378)
Q Consensus       355 ~~~l~~~~~~v~~~  368 (378)
                      .+.-++..|+|.+.
T Consensus        93 ~~~~~~~~l~V~~~  106 (113)
T 2edh_A           93 GKERTSAMLTVRAM  106 (113)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             CCCCEEEEEEEeCC
Confidence            46677788888764

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.73  E-value=2.8e-08  Score=80.08  Aligned_cols=75  Identities=20%  Similarity=0.342  Sum_probs=55.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC-cceEee-cC---ceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-KFIRTV-DG---GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~-~~~~~~-~~---GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+|+++.|.|.+. .+.   +.|+|+.++.+     |.  .+ .++... +.   -|.|.+++.+|+|.|.|.+.+
T Consensus        25 ~~~v~~G~~v~L~C~~~-~p~---~~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           25 AYQVSKGHKIRLTVELA-DHD---AEVKWLKNGQE-----IQ--MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             EEEEETTSCEEEEEECS-SSS---SCCEEEESSSE-----EC--CCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             cEEEecCCCEEEEEEEc-CCC---CEEEEEECCEE-----CC--CCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            37789999999999983 322   57999998764     43  33 333333 33   599999999999999999976


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                       .-++..|+|.+
T Consensus        94 -~~~~~~l~V~e  104 (104)
T 1pd6_A           94 -EKCSTELFVKE  104 (104)
T ss_dssp             -EEECCEEEEEC
T ss_pred             -CcEEEEEEEeC
Confidence             44677777753

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.72  E-value=2.3e-08  Score=78.42  Aligned_cols=77  Identities=16%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..+.+.+.+|+++.|.|...+.+    |.+.|+.++..     |.  .+.++.....-|.|.+++.+|+|.|.|.+.|  
T Consensus        15 ~~~~~~v~~G~~v~l~C~~~g~p----p~i~W~k~g~~-----~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   83 (95)
T 2ckn_A           15 EVESLLVHPGDLLQLRCRLRDDV----QSINWLRDGVQ-----LV--ESNRTRITGEEVEVRDSIPADSGLYACVTSSPS   83 (95)
T ss_dssp             BBCCEEECTTSCEEEECCEESSC----CEEEEEBTTBC-----CC--CCSSEEECSSEEEESSCCGGGSEEEEEEEEETT
T ss_pred             CcceEEEcCCCeEEEEEECCCCC----CceEEEECCEe-----cC--CCCCEEEeCCEEEECCCChHHCEEEEEEeccCC
Confidence            34667889999999999987542    37999987654     43  4456666667799999999999999999987  


Q ss_pred             -eeeEEEeeee
Q psy10772        356 -TVLCTHNLTV  365 (378)
Q Consensus       356 -~~l~~~~~~v  365 (378)
                       ..-++..|+|
T Consensus        84 g~~~~~~~l~V   94 (95)
T 2ckn_A           84 GSDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence             4555555554

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=3.4e-08  Score=80.41  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCc--eEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGG--LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~G--LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++.+     |.  .+...+ ..+..  |.|.+++.+|+|.|.|.+.|
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~-----l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N  100 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPR---PQVVWTKGGAP-----LD--TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQI  100 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEECCCEEEEEEEEccCCC---CEEEEEECCEE-----CC--CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEe
Confidence            45678899999999999876554   68999988754     32  222222 22333  99999999999999999987


Q ss_pred             ---eeeEEEeeeecc
Q psy10772        356 ---TVLCTHNLTVDA  367 (378)
Q Consensus       356 ---~~l~~~~~~v~~  367 (378)
                         ..-++..|.|.+
T Consensus       101 ~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A          101 ENMKDTATIRIRVVE  115 (118)
T ss_dssp             SSCEECCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEc
Confidence               566777777764

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.72  E-value=2.3e-08  Score=79.17  Aligned_cols=79  Identities=23%  Similarity=0.368  Sum_probs=58.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+.+|+++.|.|...+.+.   + |+|+.++..     |.  .+.++....+|    |.|.+++.+|+|.|.|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~p~---~-v~W~k~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2e7b_A           14 ALKDLEVLEGGAATLRCVLSSVAA---P-VKWCYGNNV-----LR--PGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF   82 (103)
T ss_dssp             CCCCEEEESSSCEEEEEECSSCCC---S-CEEEESSSB-----CC--CSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC
T ss_pred             cCccEEEECCCcEEEEEEEeCCCC---C-eEEEECCEE-----CC--CCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE
Confidence            356788999999999999865544   4 999998764     42  34444444444    999999999999999995


Q ss_pred             CCeeeEEEeeeeccc
Q psy10772        354 GNTVLCTHNLTVDAH  368 (378)
Q Consensus       354 ~~~~l~~~~~~v~~~  368 (378)
                      . ..-++..|+|.+.
T Consensus        83 g-~~~~~~~l~V~~~   96 (103)
T 2e7b_A           83 G-DQTTSATLTVTAL   96 (103)
T ss_dssp             S-SCBCCBCEEEECC
T ss_pred             C-CcEEEEEEEEEec
Confidence            5 4556677777653

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.71  E-value=3.6e-08  Score=79.25  Aligned_cols=89  Identities=20%  Similarity=0.179  Sum_probs=58.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc------CceeeEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD------KGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~------~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+....|.|+|+.++..      ..++++....+..-.....-|.|.+|+.+|+|.|.|.
T Consensus        11 p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (108)
T 3cx2_A           11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCE   90 (108)
T ss_dssp             CCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEE
Confidence            4567899999999999987543323368999885411      0111111000000000123599999999999999999


Q ss_pred             eCC---eeeEEEeeeecc
Q psy10772        353 LGN---TVLCTHNLTVDA  367 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~  367 (378)
                      +.|   ..-++..|+|.+
T Consensus        91 a~N~~G~~~~~~~L~V~~  108 (108)
T 3cx2_A           91 VSTKDKFDCSNFNLTVHE  108 (108)
T ss_dssp             EECSSCEEEEEEEEEEEC
T ss_pred             EecCCCceEEEEEEEEeC
Confidence            998   778888888853

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=7.6e-08  Score=77.32  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=58.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+.+|+++.|.|... .   +.+.+.|+.++.+     |.  .+.++....+    -|.|.+++.+|+|.|.|.+.| 
T Consensus        22 ~~~~~~G~~v~L~C~~~-~---p~~~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   89 (113)
T 2cpc_A           22 YVAAVRLERVVLTCELC-R---PWAEVRWTKDGEE-----VV--ESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-   89 (113)
T ss_dssp             EEEEETTCCEEEEEEES-C---TTCCCEEEETTEE-----CC--CBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-
T ss_pred             eEEEEcCCeEEEEEEec-C---CCCeEEEEECCEE-----Cc--cCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-
Confidence            36788999999999985 2   2358999998754     32  3334444333    499999999999999999998 


Q ss_pred             eeEEEeeeecccc
Q psy10772        357 VLCTHNLTVDAHS  369 (378)
Q Consensus       357 ~l~~~~~~v~~~~  369 (378)
                      .-++..|+|.+.+
T Consensus        90 ~~~~~~l~V~~~p  102 (113)
T 2cpc_A           90 ESASFTVTVTEPP  102 (113)
T ss_dssp             CEEEEEEEEECCC
T ss_pred             CcEEEEEEEecCC
Confidence            6678888888655

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=4.3e-08  Score=79.68  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-c----CceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-D----GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~----~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++.+     |.  .+.++.+. .    .-|.|.+++.+|+|.|.|.+
T Consensus        20 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           20 LEDVDVQEGSSATFRCRISPANY---EPVHWFLDKTP-----LH--ANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             CCEEEEETTSCEECCCEEESTTC---CSCEEEESSCE-----EC--CSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEcCCCC---CccEEEECCEE-----CC--CCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE
Confidence            45678999999999999875544   58999998764     43  33333332 1    23999999999999999997


Q ss_pred             CCeeeEEEeeeeccccc
Q psy10772        354 GNTVLCTHNLTVDAHSN  370 (378)
Q Consensus       354 ~~~~l~~~~~~v~~~~c  370 (378)
                      .+ ..++..|+|.+.+-
T Consensus        90 g~-~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           90 GD-QRASAALRVTEKPS  105 (115)
T ss_dssp             TT-EECCEEEEEECCSS
T ss_pred             CC-eeEEEEEEEECCCc
Confidence            64 45667788877654

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=6.2e-08  Score=76.68  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=59.1

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+.+|+++.|.|... .+   .+.|+|+.++.+     |.  .+.++....+|    |.|.+++.+|+|.|.|..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~-~p---~~~v~W~k~~~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2dku_A           14 ELTNLQVEEKGTAVFTCKTE-HP---AATVTWRKGLLE-----LR--ASGKHQPSQEGLTLRLTISALEKADSDTYTCDI   82 (103)
T ss_dssp             CCCCEEEETTSEEEEEEECS-SC---CSCCEEEESSCB-----CC--SSSSEEEEEETTEEEEEEESCCTTTCSEEEEEC
T ss_pred             cCCcEEEeCCCcEEEEEEeC-CC---CCeEEEEeCCEE-----CC--CCCeEEEEeCCCEEEEEECCCCcccCEEEEEEe
Confidence            35678899999999999953 22   248999998764     43  34444444344    999999999999999994


Q ss_pred             CCeeeEEEeeeecccc
Q psy10772        354 GNTVLCTHNLTVDAHS  369 (378)
Q Consensus       354 ~~~~l~~~~~~v~~~~  369 (378)
                      . ..-++..|+|.+.+
T Consensus        83 g-~~~~~~~l~V~~~p   97 (103)
T 2dku_A           83 G-QAQSRAQLLVQGRR   97 (103)
T ss_dssp             S-SCBCCEEEEEECSC
T ss_pred             C-CceEEEEEEEeCcc
Confidence            4 55567788887654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=1.8e-08  Score=79.76  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc----ceEeecCc----eEEeeecCCCCeEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK----FIRTVDGG----LVIMAVEELDAGKYD  350 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~----~~~~~~~G----LlI~~v~~~DsG~Y~  350 (378)
                      .+.+.+.+|+++.|.|.....+    +.|+|+.++.+     |.  .+.    ++....+|    |.|.+++.+|+|.|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~----~~v~W~k~g~~-----i~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   83 (101)
T 2edk_A           15 LEDQQVFVGDRVEMAVEVSEEG----AQVMWMKNGVE-----LT--REDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ   83 (101)
T ss_dssp             CCCEEEESSCCCBCCEEESCSS----CCCEEEESSCB-----CC--CSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEE
T ss_pred             CCceEEcCCCCEEEEEEEeCCC----CEEEEEECCEE-----CC--CCCCcceeEEEEECCCEEEEEECCCChhhCEEEE
Confidence            4567899999999999986554    47999998765     32  222    22333333    999999999999999


Q ss_pred             EEeCCeeeEEEeeeeccc
Q psy10772        351 CWLGNTVLCTHNLTVDAH  368 (378)
Q Consensus       351 C~~~~~~l~~~~~~v~~~  368 (378)
                      |.+.| .-++-.|+|.+.
T Consensus        84 C~a~n-~~~~~~l~V~~~  100 (101)
T 2edk_A           84 VITNG-GQCEAELIVEEK  100 (101)
T ss_dssp             EECSS-CEECCBEEEECC
T ss_pred             EEEcC-CcEEEEEEEeCC
Confidence            99997 456667777653

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=2.8e-08  Score=78.61  Aligned_cols=79  Identities=15%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ...+.+.+|+++.|.|...+++    |.++|+.++..     |.  .+.++.....-|.|.+++.+|+|.|.|.+.|   
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p----p~i~W~k~g~~-----~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   78 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV----QSINWLRDGVQ-----LA--ESNRTRITGEEVEVQDSVPADSGLYACVTSSPSG   78 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC----CEEEEEESSSB-----CC--CCSSEEECSSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC----CeEEEEECCEE-----CC--CCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCc
Confidence            4566788899999999987642    47999998754     43  3445555567799999999999999999987   


Q ss_pred             eeeEEEeeeeccc
Q psy10772        356 TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ~~l~~~~~~v~~~  368 (378)
                      ...+++.|.|.+.
T Consensus        79 ~~~~~~~l~V~~~   91 (99)
T 2cr3_A           79 SDTTYFSVNVSDA   91 (99)
T ss_dssp             EEEEEEEECBCSC
T ss_pred             eEEEEEEEEEecC
Confidence            5677777777653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=4.1e-08  Score=79.81  Aligned_cols=81  Identities=21%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++..     +.. .+.++.. .+.-|.|.+++.+|+|.|.|.+.|  
T Consensus        15 p~~~~v~~G~~v~l~C~~~g~p~---p~i~W~k~g~~-----~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (118)
T 2eo9_A           15 PVNQTVAVDGTFVLSCVATGSPV---PTILWRKDGVL-----VST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS   85 (118)
T ss_dssp             CCCEEEETTCEEEEECBCCCSSC---CEEEEEESSSB-----CCT-TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSS
T ss_pred             CCCEEEcCCCeEEEEEEEEecCC---CEEEEEECCEE-----CcC-CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCC
Confidence            45678999999999999865444   58999998754     321 2334433 344599999999999999999987  


Q ss_pred             -eeeEEEeeeeccc
Q psy10772        356 -TVLCTHNLTVDAH  368 (378)
Q Consensus       356 -~~l~~~~~~v~~~  368 (378)
                       ...++..|+|.+.
T Consensus        86 g~~~~~~~l~V~~~   99 (118)
T 2eo9_A           86 GEATWSAYIEVQEF   99 (118)
T ss_dssp             CEEEEECCEEEECC
T ss_pred             CcEEEEEEEEEEeC
Confidence             5566677777754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=3.4e-08  Score=79.16  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCc---eEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGG---LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~G---LlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++..     +.. .+.++...  .+|   |.|.+++.+|+|.|.|.+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~-----~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A           15 LKHYKIFEGMPVTFTCRVAGNPK---PKIYWFKDGKQ-----ISP-KSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             CCCEEEETTCCEEEEEEBCCSSC---CEEEEECSSCB-----CCT-TCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CcCeEEeCCCeEEEEEEEEecCC---CEEEEEECCEE-----CCC-CCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            46678999999999999875443   68999998754     321 12233222  244   999999999999999999


Q ss_pred             CC---eeeEEEeeeecccc
Q psy10772        354 GN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~~~  369 (378)
                      .|   ...+...|.|.+..
T Consensus        86 ~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             ECTTCCEEECCCEEEECCS
T ss_pred             EECCCeEEEEEEEEEECCC
Confidence            87   56677788887643

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.67  E-value=4.5e-08  Score=77.73  Aligned_cols=80  Identities=20%  Similarity=0.322  Sum_probs=56.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCC-
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      ...+.+.+|+++.|.|...+.+.   |.+.|++++..     +.  .+.++...  ..-|.|.+++.+|+|.|.|.+.| 
T Consensus        17 ~~~~~v~~G~~v~l~C~~~g~p~---p~i~W~~~~~~-----~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A           17 LENQTTSIGESIEVSCTASGNPP---PQIMWFKDNET-----LV--EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             CCCEEEETTCCEEEECBCC-------CCEEEEESSSB-----CC--CBTTEEEETTTTEEEECSCCGGGCEEEEEEEC--
T ss_pred             CCCeEEeCCCeEEEEEECcCcCC---CeEEEEECCeE-----cc--cCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeC
Confidence            35678899999999999864433   58999998764     32  22333322  23499999999999999999987 


Q ss_pred             --eeeEEEeeeeccc
Q psy10772        356 --TVLCTHNLTVDAH  368 (378)
Q Consensus       356 --~~l~~~~~~v~~~  368 (378)
                        ..-++..|.|...
T Consensus        87 ~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           87 LGCAKVEAFFIIEGA  101 (108)
T ss_dssp             --CEEEEEEEEEEC-
T ss_pred             CCceEEEEEEEEeCC
Confidence              5667778887754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.67  E-value=6.9e-08  Score=78.88  Aligned_cols=82  Identities=26%  Similarity=0.369  Sum_probs=60.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--C---ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--G---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|.|+.++..     +.. .++++....  .   -|.|.+++.+|+|.|.|.+
T Consensus        22 p~~~~v~~G~~v~L~C~~~g~p~---p~v~W~k~~~~-----~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           22 PQSKKVLEGDSVKLECQISAIPP---PKLFWKRNNEM-----VQF-NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CCCEEEETTEEEEEEEEBCCBSC---CEEEEEETTEE-----CCC-CBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEEeccCC---CEEEEEECCEE-----CcC-CCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            46688999999999999865443   58999988753     321 123333322  2   3999999999999999999


Q ss_pred             CC---eeeEEEeeeecccc
Q psy10772        354 GN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~~~  369 (378)
                      .|   ..-++..|.|...+
T Consensus        93 ~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EETTEEEEEEEEEEEECCS
T ss_pred             EcCCCeEEEEEEEEEeCCC
Confidence            87   56677888887643

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=3.5e-08  Score=77.41  Aligned_cols=77  Identities=25%  Similarity=0.323  Sum_probs=54.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.+.|+.++..     +.  .+...... ..-|.|.+++.+|+|.|.|.+.|  
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   87 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPV---PRITWLLNGQP-----IQ--YARSTCEAGVAELHIQDALPEDHGTYTCLAENAL   87 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESC---CCCEEEESSSB-----CS--SCCCEEETTEEEEEECSCCTTCCBCEEEEEECSS
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCC---CeEEEEECCEE-----Cc--ccceEeeCCeEEEEECCCChhhCEEEEEEEEECC
Confidence            35577889999999999875544   58999998764     32  22222211 23499999999999999999987  


Q ss_pred             -eeeEEEeeee
Q psy10772        356 -TVLCTHNLTV  365 (378)
Q Consensus       356 -~~l~~~~~~v  365 (378)
                       ..-++..|+|
T Consensus        88 g~~~~~~~l~V   98 (99)
T 2yr3_A           88 GQVSCSAWVTV   98 (99)
T ss_dssp             CEEEEECCEEE
T ss_pred             CeEEEEEEEEE
Confidence             4455555554

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.65  E-value=3.7e-08  Score=76.60  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEec--ccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYS--KDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~--~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++  ..     +.  .+.++...  ..-|.|.+++.+|+|.|.|.+.
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~---p~i~W~k~~~~~~-----~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPD---PTATWTVGDSGAA-----LA--PELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSS---CEEEEECSTTTCB-----CS--TTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCC---CEEEEEECCCCcc-----cC--CcEEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            45778999999999999976654   689999987  43     31  11111111  1238999999999999999999


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      |   ..-++..|.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            8   5556666655

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.60  E-value=8.3e-08  Score=76.57  Aligned_cols=77  Identities=25%  Similarity=0.389  Sum_probs=58.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCc---eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGG---LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~G---LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|.....     |.|+|++++.+     +.  .+.++... +.+   |.|.+++.+|+|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~-----~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A           15 LKTKEASEGATATLQCELSKV-----APVEWKKGPET-----LR--DGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             CBCCEEETTSCEEEEEEBSSS-----CCCEEESSSSB-----CC--SSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET
T ss_pred             CCcEEEeCCCcEEEEEEeCCC-----CeeEEEECCEE-----CC--CCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc
Confidence            466789999999999998532     47999988754     43  34444443 334   9999999999999999997


Q ss_pred             CeeeEEEeeeeccc
Q psy10772        355 NTVLCTHNLTVDAH  368 (378)
Q Consensus       355 ~~~l~~~~~~v~~~  368 (378)
                      | .-++..|+|...
T Consensus        83 n-~~~~~~l~V~~~   95 (108)
T 2dm7_A           83 Q-ERTSATLTVRAL   95 (108)
T ss_dssp             T-EEEEEECEEECC
T ss_pred             C-CEEEEEEEEecC
Confidence            6 467777888764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.59  E-value=1.9e-07  Score=73.17  Aligned_cols=77  Identities=26%  Similarity=0.305  Sum_probs=56.2

Q ss_pred             ceeEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        279 RLKQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+.+.+.+|+++.|.|... ..+.   +.++|+.++..     +   ...+....+.-|.|.+++.+|+|.|.|.+.|  
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~k~~~~-----~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPA---YTLVWTRLHNG-----K---LPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMF   85 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSC---CEEEEEEGGGB-----C---CCTTEEEETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCC---cEEEEEeCCCC-----C---CCceeecCCCEEEEeCCChhhCEEEEEEecCCC
Confidence            3567888999999999987 2333   58999987543     1   1123344566799999999999999999987  


Q ss_pred             -eeeEEEeeeec
Q psy10772        356 -TVLCTHNLTVD  366 (378)
Q Consensus       356 -~~l~~~~~~v~  366 (378)
                       ..-++..|.|.
T Consensus        86 g~~~~~~~l~V~   97 (98)
T 1gl4_B           86 AMDQGTATLHVQ   97 (98)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CccccEEEEEEe
Confidence             45556666553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.59  E-value=4e-08  Score=79.01  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|.|+.++.+     |.  .+.++...    ..-|.|.+++.+|+|.|.|.+.
T Consensus        21 p~~~~v~~G~~v~L~C~~~g~p~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDTDGEPV---PTVTWLRKGQV-----LS--TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEESSSSCEECCEEEECSSC---CBCCBCSSSSC-----CT--TCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCC---CEEEEEECCEE-----CC--CCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            45678899999999999875544   68999988754     32  23333332    2359999999999999999998


Q ss_pred             C---eeeEEEeeeec
Q psy10772        355 N---TVLCTHNLTVD  366 (378)
Q Consensus       355 ~---~~l~~~~~~v~  366 (378)
                      |   ..-++..|+|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            7   55667777664

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.57  E-value=1.1e-07  Score=81.40  Aligned_cols=82  Identities=23%  Similarity=0.381  Sum_probs=59.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cC---ceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DG---GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~---GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      +.+.+.+|+++.|.|...+.+.   |.|+|+.++..     |.  .+.++...  .+   -|.|.+++..|+|.|.|.+.
T Consensus        49 ~~~~v~~G~~v~L~C~~~g~P~---p~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           49 LDMEVVEGSAARFDCKVEGYPD---PEVMWFKDDNP-----VK--ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             CCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecC---CEEEEEECCEE-----CC--CCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            4578899999999999876544   58999998754     32  33333332  22   49999999999999999998


Q ss_pred             C---eeeEEEeeeecccccC
Q psy10772        355 N---TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~c~  371 (378)
                      |   ..-++..|.|....-.
T Consensus       119 N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          119 NSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             ETTEEEEEEEEEEEECC---
T ss_pred             ECCCeEEEEEEEEEeCcCcC
Confidence            7   5667778888765533

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.56  E-value=8.5e-08  Score=75.19  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=54.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC-cceEee--cCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-KFIRTV--DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~-~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.++|+.++.+     +..... ..+...  ..-|.|.+++.+|+|.|.|.+.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   86 (100)
T 3caf_A           15 KRLHAVPAANTVKFRCPAGGNPM---PTMRWLKNGKE-----FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN   86 (100)
T ss_dssp             CCEEEECTTCCEEEECCEEEESC---CEEEEEETTEE-----CCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccEEEecCCCEEEEEEEccccCC---CEEEEEECCEE-----cccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEe
Confidence            45678889999999999875543   57999987654     321011 011222  22499999999999999999987


Q ss_pred             ---eeeEEEeeee
Q psy10772        356 ---TVLCTHNLTV  365 (378)
Q Consensus       356 ---~~l~~~~~~v  365 (378)
                         ...++..|.|
T Consensus        87 ~~g~~~~~~~l~V   99 (100)
T 3caf_A           87 EYGSINHTYHLDV   99 (100)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence               4455666654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.55  E-value=7.6e-08  Score=86.66  Aligned_cols=76  Identities=26%  Similarity=0.336  Sum_probs=57.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEEEeCC---
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      +.+.+|+++.|.|.+.+..  |.|.|+|+.++.+     |.  .+.++.. ..|   |.|.+++.+|+|.|.|.+.|   
T Consensus       126 ~~v~~g~~v~l~C~v~g~~--P~p~i~W~k~g~~-----l~--~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  195 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIK--KETHIVWYKDERE-----IS--VDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRG  195 (207)
T ss_dssp             EEEETTTEEEEEEEEESCC--TTCEEEEEETTEE-----EC--CCCCCCC-SSEEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             cEEcCCCcEEEEEEEeCCC--CCCEEEEEECCEE-----CC--CCCceEc-CCCEEEEEECCCCcccCEEEEEEEEcCCC
Confidence            6788999999999986541  2368999998764     54  3444332 233   99999999999999999998   


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      ...++..|++++
T Consensus       196 ~~~~~~~L~~~~  207 (207)
T 3rbs_A          196 KDKSRLKLVDEA  207 (207)
T ss_dssp             EEEEEEEECCC-
T ss_pred             EEEEEEEEecCC
Confidence            778888887754

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.53  E-value=2.3e-07  Score=74.24  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe---------ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT---------VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~---------~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..|..+.|+|.+.+.+.   |.|+|++++.+     |.  .++++..         ...-|.|.+++.+|+|.|.|.+.|
T Consensus        14 ~~~~~~~~~c~v~G~P~---P~i~W~k~g~~-----l~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   83 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPK---PALQWFYNGAI-----LN--ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN   83 (103)
T ss_dssp             CCCCEEEEEEEEECSSC---CEEEEEETTEE-----EC--CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             eECcEEEEEEEEEEeCC---CEEEEEECCEE-----CC--CCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEe
Confidence            35788999999876655   78999998754     43  3333211         111299999999999999999998


Q ss_pred             ---eeeEEEeeeeccc
Q psy10772        356 ---TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ---~~l~~~~~~v~~~  368 (378)
                         ..-++..|+|.+.
T Consensus        84 ~~G~~~~~~~l~V~~~   99 (103)
T 1wwb_X           84 EYGKDEKQISAHFMGW   99 (103)
T ss_dssp             SSCEEEEEEEECCSCC
T ss_pred             CCCcEeEEEEEEECCC
Confidence               6778888888754

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.46  E-value=2.7e-07  Score=77.95  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=54.9

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--ee---------cCceEEeeecCCCCeEEEEEeC
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TV---------DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~---------~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+..+.|+|.+.+.+.   |.|+|++|+.+     |.  .+.++.  ..         ..-|.|.+++..|+|.|.|.|.
T Consensus        14 ~~~~~~l~c~v~G~P~---P~I~W~knG~~-----l~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~   83 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPA---PSLRWLFNGSV-----LN--ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (126)
T ss_dssp             CCCEEEEEEEECCSSC---CEEEEEETTEE-----CC--CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cCccEEEEEEEeeeCC---CeEEEEECCEE-----CC--CCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEE
Confidence            5678889999876665   79999999865     32  222211  11         1239999999999999999999


Q ss_pred             C---eeeEEEeeeecccc
Q psy10772        355 N---TVLCTHNLTVDAHS  369 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~  369 (378)
                      |   ...++..|.|.+.+
T Consensus        84 N~~G~~~~t~~l~v~~~P  101 (126)
T 1he7_A           84 NPFGQASASIMAAFMDNP  101 (126)
T ss_dssp             ETTEEEEEEEEECCCSCT
T ss_pred             ECCCeEEEEEEEEEEcCC
Confidence            8   77778888777543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.44  E-value=5.8e-07  Score=87.43  Aligned_cols=121  Identities=21%  Similarity=0.236  Sum_probs=81.0

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..+...|   .+.|++. +-...|....- ...+...     |..=   ...+.+.+..|+++.|.|...+.+.  
T Consensus       259 ~L~I~~v~~~D---~G~Y~C~-a~N~~G~~~~~~~l~v~~~-----P~~~---~~~~~~~v~~g~~v~l~C~~~g~P~--  324 (384)
T 3kld_A          259 ILEIPNFQQED---AGSYECV-AENSRGKNVAKGQLTFYAQ-----PNWV---QIINDIHVAMEESVFWECKANGRPK--  324 (384)
T ss_dssp             EEEECSCCGGG---CEEEEEE-EEETTEEEEEEEEEEEEEE-----EEEE---ECCCCEEECTTCCEEEECEEEEESC--
T ss_pred             EEEECCCChhh---CEEEEEE-EEcCCCeEEEEEEEEEecC-----Cccc---cCCCceEecCCCCEEEEeECCccCC--
Confidence            35566665555   5789887 44555654321 1111110     0000   0123567888999999999976554  


Q ss_pred             CCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        304 NQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                       |.++|++++.+     |.  .++++...+.-|.|.+++.+|+|.|.|.+.|   ...++-.|+|.+
T Consensus       325 -p~i~W~k~g~~-----l~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          325 -PTYRWLKNGDP-----LL--TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             -CEEEEEETTEE-----CC--CBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             -CeEEEEECCEE-----CC--CCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence             68999998764     43  4556666666799999999999999999988   777888888864

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.44  E-value=8.7e-07  Score=69.74  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-eEeeccCcceEe-----ecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-QIKFRSDKFIRT-----VDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-~l~~~~~~~~~~-----~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|.....+.   +.|.|+.++...-.. .-....+.|+..     ....|.|.+|+.+|+|.|.|.
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (108)
T 3m45_A           13 TQNVTVVEGGTAILTCRVDQNDN---TSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCS   89 (108)
T ss_dssp             CCCEEEETTSCEEEEEEESSCSS---CCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeeEEEeCCcEEEEeEEcCCCc---cEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEE
Confidence            45688999999999999976543   589998754310000 000012234433     234599999999999999999


Q ss_pred             eCC--eeeEEEeeeecc
Q psy10772        353 LGN--TVLCTHNLTVDA  367 (378)
Q Consensus       353 ~~~--~~l~~~~~~v~~  367 (378)
                      +.+  ..-+...|+|.+
T Consensus        90 ~~n~~~~~~~~~L~V~~  106 (108)
T 3m45_A           90 LFTMPVKTSKAYLTVLG  106 (108)
T ss_dssp             ECSSSCEEEEEEEEEEC
T ss_pred             EEcCCCcEEEEEEEEEc
Confidence            987  334455566643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.43  E-value=6e-08  Score=79.41  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccCceeeEeeccCcceEe----ecC----ceEEeeecCCCC-eEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRT----VDG----GLVIMAVEELDA-GKY  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~~~~~l~~~~~~~~~~----~~~----GLlI~~v~~~Ds-G~Y  349 (378)
                      +.+.+.+|+++.|.|...+.+.   |. |+|++++..     |....+.++..    .++    -|.|.+++..|+ |.|
T Consensus        21 ~~~~~~~G~~v~l~C~~~g~P~---p~~i~W~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y   92 (122)
T 2cry_A           21 QTQHALHGEKGQIKCFIRSTPP---PDRIAWSWKENV-----LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   92 (122)
T ss_dssp             CCCCCCTTSCCCCCEEECCSSC---CSEEEEESSSCE-----ECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CeEEEecCCCEEEEEEEeecCC---CcEeEEEECCEE-----ccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceE
Confidence            4456788999999999875543   55 999998654     32111233322    133    499999999999 999


Q ss_pred             EEEeCC---eeeEEEeeeecccccCCCCC
Q psy10772        350 DCWLGN---TVLCTHNLTVDAHSNVADAP  375 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~~~c~~~~~  375 (378)
                      .|.+.|   ..-+...|.|.+.+-..|++
T Consensus        93 ~C~a~N~~G~~~~~~~l~V~~~~~~~pss  121 (122)
T 2cry_A           93 NCTAWNSFGSDTEIIRLKEQGSEMSGPSS  121 (122)
T ss_dssp             EEEEECSSCEEEEEECCCCSCSSCCCCCC
T ss_pred             EEEEECCCCeEEEEEEEEECCCCCCCCCC
Confidence            999998   66789999999888888775

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.43  E-value=6.9e-07  Score=73.51  Aligned_cols=90  Identities=19%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----ccCcceEee-----cCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----RSDKFIRTV-----DGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----~~~~~~~~~-----~~GLlI~~v~~~DsG~  348 (378)
                      ...+.+.+|+++.|.|...+.+.   +.|.|+..+..    .+..     ..++++...     ...|.|.+|+.+|+|.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   80 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKN---SSLQWLTPSGF----TIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGV   80 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTT---CEEEEECTTSC----EEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CccEEEcCCCCEEEEeEEeccCC---CEEEEECCCCe----EEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEE
Confidence            45678999999999999875433   58999843322    0110     123333332     2459999999999999


Q ss_pred             EEEEeCC--eeeEEEeeeecccc----cCCCCC
Q psy10772        349 YDCWLGN--TVLCTHNLTVDAHS----NVADAP  375 (378)
Q Consensus       349 Y~C~~~~--~~l~~~~~~v~~~~----c~~~~~  375 (378)
                      |.|.+.+  .......|+|...+    |.-|..
T Consensus        81 Y~C~a~n~g~~~~~~~l~V~~~P~~~~~~~P~~  113 (124)
T 3rbg_A           81 YKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH  113 (124)
T ss_dssp             EEEEEESSSEEEEEEEEEEECC-----------
T ss_pred             EEEEEEcCCCCcEEEEEEEEeCCCCCcccccCc
Confidence            9999976  45666677776543    555544

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.40  E-value=7.3e-07  Score=72.46  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-----CcceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-----DKFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-----~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.+.|++++....+..+....     .........-|.|.+++.+|+|.|.|.+.
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELN-VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTT-CCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCeEEEEEEEEcCCC-CcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            4467889999999999976333 22478999887631110000000     01111223359999999999999999998


Q ss_pred             C---eeeEEEeeeecccccC
Q psy10772        355 N---TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~c~  371 (378)
                      |   ..-++..|+|.+.+-+
T Consensus        95 n~~g~~~~~~~l~V~~~p~i  114 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHEKPFV  114 (122)
T ss_dssp             CSSCEEEEEEEEEEEEEECC
T ss_pred             cCCCceEEEEEEEEeccCeE
Confidence            8   4557888888765543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.37  E-value=1.3e-06  Score=75.43  Aligned_cols=76  Identities=24%  Similarity=0.313  Sum_probs=57.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      .+.+.+|+++.|.|...+.+.   |.++|++++..     +.  .+.++.....-|.|.+++..|+|.|.|.+.|   ..
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~---p~v~W~~~~~~-----~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  191 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPV---PDIRWRKVLEP-----MP--STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD  191 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESC---CEEEEEETTBC-----CC--TTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEEecCCcEEEEEEccCCCC---CceEEEeCCCc-----CC--CceeecCCCCEEEEccCChhhCEEEEEEEEecCCce
Confidence            567889999999999865533   68999998764     32  2333333455699999999999999999987   45


Q ss_pred             eEEEeeeec
Q psy10772        358 LCTHNLTVD  366 (378)
Q Consensus       358 l~~~~~~v~  366 (378)
                      -.+..|.|.
T Consensus       192 ~~~~~l~V~  200 (201)
T 3s97_C          192 KHQARIYVQ  200 (201)
T ss_dssp             EEEEEEEEE
T ss_pred             eeeEEEEEe
Confidence            566666665

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.36  E-value=2.8e-06  Score=73.59  Aligned_cols=125  Identities=17%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..+...|   .+.|++.. -...|..... ...+........+..   ......+.+.+|+++.|.|...+.+.  
T Consensus        63 ~L~i~~~~~~d---~G~Y~C~~-~n~~g~~~~~~~l~V~~~p~~~~~~~---~~~~~~~~~~~g~~~~l~C~~~g~p~--  133 (197)
T 2j8h_A           63 QLIIASVTDDD---ATVYQVRA-TNQGGSVSGTASLEVEVPAKIHLPKT---LEGMGAVHALRGEVVSIKIPFSGKPD--  133 (197)
T ss_dssp             EEEECSCCGGG---CSEEEEEE-EETTEEEEEEEEEEEEEEEEECCSSC---BTTBEEEEEETTCCCEEEEEEEEESC--
T ss_pred             EEEECcCCHHh---CEEEEEEE-EECCCceeEEEEEEEcCCCcCCCCcc---ccccCeEEEeCCCEEEEEEEEEecCC--
Confidence            44555555554   57898874 3455654321 111111110000010   01235677889999999999876543  


Q ss_pred             CCCeEEEEecccCceeeEeeccCcceEee----cCceEEee-ecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772        304 NQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMA-VEELDAGKYDCWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~-v~~~DsG~Y~C~~~~---~~l~~~~~~v~  366 (378)
                       |.++|+.++..     |.  .+.++...    ..-|.|.+ ++..|+|.|.|.+.|   ..-++..|.|.
T Consensus       134 -p~i~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          134 -PVITWQKGQDL-----ID--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             -CEEEEEESSCE-----EC--SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -CcEEEEECCEE-----ee--cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence             58999988753     43  33333321    23488889 999999999999987   55666666664

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.33  E-value=6.3e-07  Score=69.34  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee-
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV-  357 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~-  357 (378)
                      ...+.+.+|+++.|.|...+.+.   |.+.|+.++.+     +.  .+     ...-|.|.+++.+|+|.|.|.+.|.. 
T Consensus        10 p~~~~v~~G~~~~l~C~~~g~p~---p~i~W~~~~~~-----~~--~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g   74 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVAVGSPI---PHYQWFKNELP-----LT--HE-----TKKLYMVPYVDLEHQGTYWCHVYNDRD   74 (91)
T ss_dssp             CCCEEECTTSCEEEECEEECSSC---CEEEEEETTEE-----CT--TC-----CSSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CCccEecCCCcEEEEEEeccCCC---CEEEEEcCCee-----CC--cC-----CCCeEEECCCCHHhCEEEEEEEEcCCC
Confidence            34567889999999999865444   58999987653     32  11     13469999999999999999998721 


Q ss_pred             ---eEEEeeeecc
Q psy10772        358 ---LCTHNLTVDA  367 (378)
Q Consensus       358 ---l~~~~~~v~~  367 (378)
                         -....|.|.+
T Consensus        75 ~~~s~~~~l~V~~   87 (91)
T 3bfo_A           75 SQDSKKVEIIIDE   87 (91)
T ss_dssp             EEECCCEEEEEC-
T ss_pred             CEEeeeEEEEEeh
Confidence               1335555543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.32  E-value=1.2e-06  Score=76.65  Aligned_cols=78  Identities=22%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--C---ceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--G---GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~---GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++.+     +.  .+.++....  +   -|.|.+++..|+|.|.|.+.
T Consensus       125 ~~~~v~~g~~~~l~C~~~g~p~---p~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  194 (212)
T 2r15_A          125 DVVTIQEGKALNLTCNVWGDPP---PEVSWLKNEKA-----LA--QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  194 (212)
T ss_dssp             SEEEEETTCCEEEEEEEECSSC---CEEEEEETTEE-----EC--CCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEccCCeEEEEEEEcCCCC---ceEEEEECCeE-----Cc--cCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEE
Confidence            3567889999999999876544   67999998754     43  333333222  2   59999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|..
T Consensus       195 N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          195 NKYGSETSDFTVSVFI  210 (212)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEEEEEc
Confidence            7   556666776653

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=7.7e-07  Score=69.55  Aligned_cols=61  Identities=21%  Similarity=0.339  Sum_probs=47.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.+.|+.++.+     +.  ..     ...-|.|.+++.+|+|.|.|.+.|
T Consensus        18 ~~~~v~~G~~v~l~C~~~g~p~---~~v~W~k~~~~-----~~--~~-----~~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           18 EGGAVAPGGTVTLTCEVPAQPS---PQIHWMKDGVP-----LP--LP-----PSPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             TTSEECTTCEEEEECCCSSCSS---CCCCCEESSSB-----CS--SC-----CCSEEEEESCCTTTCEEEECEECC
T ss_pred             CCCEEcCCCeEEEEEEEccCCC---CEEEEEECCEE-----Cc--CC-----CCCEEEECCCCcccCEEEEEEEEe
Confidence            3456889999999999865443   57999987654     32  11     245699999999999999999998

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.30  E-value=3.2e-06  Score=67.62  Aligned_cols=75  Identities=16%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+...++...|..       ...+|+....    .-|.|.+|+.+|+|
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   84 (108)
T 1jhl_L            8 PSYLVASPGETITINCRASKSI---SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             CCeeEEcCCCCEEEEeEECCCC---CceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            3457889999999999986543   35799998753222111210       0123444332    13999999999999


Q ss_pred             EEEEEeCCe
Q psy10772        348 KYDCWLGNT  356 (378)
Q Consensus       348 ~Y~C~~~~~  356 (378)
                      .|.|.+.+.
T Consensus        85 ~Y~C~~~n~   93 (108)
T 1jhl_L           85 MYICQQHNE   93 (108)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEccC
Confidence            999999874

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.30  E-value=2e-06  Score=70.92  Aligned_cols=90  Identities=20%  Similarity=0.402  Sum_probs=54.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-cc----------CcceEee----c---CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RS----------DKFIRTV----D---GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~----------~~~~~~~----~---~GLlI~~v  341 (378)
                      ..+++..|+++.|+|....++......|.|+.+........+.. ..          .+|+...    .   --|.|.+|
T Consensus         8 ~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v   87 (123)
T 4gjt_B            8 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   87 (123)
T ss_dssp             SEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESC
T ss_pred             CEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCC
Confidence            45788999999999987654442223578987643322211111 00          1232221    1   13999999


Q ss_pred             cCCCCeEEEEEeCC----eeeEEEeeeecccc
Q psy10772        342 EELDAGKYDCWLGN----TVLCTHNLTVDAHS  369 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~----~~l~~~~~~v~~~~  369 (378)
                      +.+|+|.|.|....    ..-+...|+|.+|-
T Consensus        88 ~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~~  119 (123)
T 4gjt_B           88 VQADEGEYECRVSTFPAGSFQARLRLRVLEHH  119 (123)
T ss_dssp             CSSSCSEEEEEEEESSSCEEEEEEEEEC----
T ss_pred             ChHHCEEEEEEEEECCCCeEEeEEEEEEEECc
Confidence            99999999997643    44567788888763

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.29  E-value=9.7e-07  Score=79.45  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=69.8

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..++..|   .+.|++. +-+..|.... +...+..+.     ..   ....+.+.+.+|+++.|.|...+.|.  
T Consensus        70 ~L~I~~v~~~D---~G~Y~C~-a~n~~g~~~~~~~l~V~~p~-----~~---~~~~~~~~v~~g~~~~l~C~~~G~P~--  135 (203)
T 4fa8_A           70 FLVVTAANISH---DGNYLCR-MKLGETEVTKQEHLSVVKPL-----TL---SVHSERSQFPDFSVLTVTCTVNAFPH--  135 (203)
T ss_dssp             EEEESSCCGGG---CEEEEEE-EEETTEEEEEEEEEEEEEEE-----EE---EEEEEECCSSCSCCEEEEEEEEEESC--
T ss_pred             EEEEccCCHHH---CeEEEEE-EEcCCCcEEEEEEEEecCCc-----ee---eecceeEEEcCCCEEEEEEEcCCCCC--
Confidence            45666666655   6889987 4556676542 111121111     00   01234455678999999999976544  


Q ss_pred             CCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        304 NQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                       |.|+|++++....   .....+.++....+|    |.|.+++.+|+|.|.|.+.|   +.-+.|
T Consensus       136 -P~v~W~~~~~~~~---~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~  196 (203)
T 4fa8_A          136 -PHVQWLMPEGVEP---APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVY  196 (203)
T ss_dssp             -CEEEECCC---------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEE
T ss_pred             -CEEEEEECCeeec---CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence             7899988754310   111234566666666    34468999999999999998   444444

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.28  E-value=4.1e-06  Score=66.14  Aligned_cols=75  Identities=24%  Similarity=0.293  Sum_probs=49.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC-----------ceeeEeeccCcceEeec------CceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-----------GRYQIKFRSDKFIRTVD------GGLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~-----------~~~~l~~~~~~~~~~~~------~GLlI~~v~  342 (378)
                      +.+.+.+|+++.|+|.....+......|.|+.+....           +. .+......|+....      --|.|.+|+
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~-~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   80 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDER-NVTYQKSSRYQLKGDLNKGDVSLIIKNVT   80 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSS-SEEEESCTTEEECSCGGGTBCCEEECSCC
T ss_pred             CCEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCc-CccccccceEEEccCccCCcEeEEEccCC
Confidence            3567889999999999865433222358998865321           10 01111233443322      259999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        81 ~~D~G~Y~C~v~~   93 (109)
T 2oyp_A           81 LDDHGTYCCRIQF   93 (109)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             ChhCeEEEEEEEc
Confidence            9999999999987

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.28  E-value=2.1e-06  Score=77.21  Aligned_cols=87  Identities=20%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------ec--cCcceEe-ecC---ceEEeeecCCCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------FR--SDKFIRT-VDG---GLVIMAVEELDA  346 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~~--~~~~~~~-~~~---GLlI~~v~~~Ds  346 (378)
                      .+++..|+++.|+|........+.+.|+|+.++.+.....+.        .+  ...++.. .+.   -|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            568899999999997543334455789999887542111000        00  0111111 111   299999999999


Q ss_pred             eEEEEEeCC---eeeEEEeeeecc
Q psy10772        347 GKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       347 G~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      |.|.|.+.|   ...+...|+|..
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~  105 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK  105 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC
Confidence            999999987   566677777754

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.28  E-value=2.2e-06  Score=73.81  Aligned_cols=83  Identities=24%  Similarity=0.456  Sum_probs=59.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.+.|+.++.+     +.  .+.++....+|    |.|.+++..|+|.|.|.+.
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPL---PDIKWYRFGKE-----LI--QSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT   83 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESC---CEEEEEETTEE-----EC--CCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEEecCCC---CEEEEEECCEE-----CC--CCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence            45678899999999999865433   57999987654     42  33344443343    9999999999999999987


Q ss_pred             C---eeeEEEeeeecccccC
Q psy10772        355 N---TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~c~  371 (378)
                      +   ....+..|.|...+-.
T Consensus        84 n~~~~~~~~~~l~v~~~p~~  103 (197)
T 3lcy_A           84 NEVGEVETSSKLLLQATPQF  103 (197)
T ss_dssp             CSSCEEEEEEEEEEEEEEEE
T ss_pred             CCCCceeEEEEEEEEcCCCC
Confidence            6   4555666666654433

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.28  E-value=6.5e-07  Score=80.49  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cC--c---eEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DG--G---LVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~--G---LlI~~v~~~DsG~Y~C~  352 (378)
                      ...+.+.+|+.+.|.|....  .-|.|.|+|++|+.+     |.  .++++... +.  |   |+|.+++.+|+|.|.|.
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~--~~P~p~i~W~kng~~-----l~--~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~   79 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEK--LSGNAKVNYIFNEKE-----IF--EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ   79 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSC--CCSCCEEEEEETTEE-----EC--SSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred             CCceEEEeCCeEEEEEEEec--CCCCCEEEEEECCEE-----Cc--cCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence            34578899999999998742  123468999999875     53  33333322 22  3   99999999999999998


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +.|
T Consensus        80 a~N   82 (207)
T 3rbs_A           80 LQD   82 (207)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            766

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.26  E-value=4.9e-07  Score=70.74  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=53.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeee-cCCCCeEEEEEeCCee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV-EELDAGKYDCWLGNTV  357 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v-~~~DsG~Y~C~~~~~~  357 (378)
                      .+-..+..|+++.|.|...+.+     +|+|+.++.+     |.  .+     .+.-|.|.+| +.+|+|.|.|.+.. .
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P-----~i~W~kdg~~-----l~--~~-----~~~~L~I~~v~~~~DsG~Y~C~A~t-~   67 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDE-----NLKWEKNGQE-----LP--QK-----HDKHLVLQDFSEVEDSGYYVCYTPA-S   67 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCS-----SCEEEETTEE-----CT--TC-----CSSCCBCCSCCTTTTCSCEEEECSS-C
T ss_pred             CceeEEEcCCeEEEEEECCCCC-----cEEEEECCEE-----Cc--CC-----CCCEEEECccCccCcCEEEEEEEcc-C
Confidence            4556778899999999986442     4999998754     42  22     3456999996 77999999999975 2


Q ss_pred             eEEEeeeeccccc
Q psy10772        358 LCTHNLTVDAHSN  370 (378)
Q Consensus       358 l~~~~~~v~~~~c  370 (378)
                      -..+-|-|++.-|
T Consensus        68 ~~~~~lylkarvc   80 (82)
T 3r08_E           68 NKNTYLYLKARVS   80 (82)
T ss_dssp             TTCCCCCCTTSCS
T ss_pred             CccEEEEEEEEeE
Confidence            2345566666555

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.26  E-value=4.2e-06  Score=67.34  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec---C---ceEEeeecCC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD---G---GLVIMAVEEL  344 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~---~---GLlI~~v~~~  344 (378)
                      ..+.+.+.+|+++.|+|.......  ...|.|+.+....+...|..       ...+|+....   .   .|.|.+++.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   84 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWK--DYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMS   84 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGT--TSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcc--cceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHH
Confidence            345688999999999999864322  12599998753221111210       0123444331   2   4999999999


Q ss_pred             CCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        345 DAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       345 DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      |+|.|.|...+   ......+|+|..
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (113)
T 1zox_A           85 DAGIYWCGITKGGLDPMFKVTVNIGP  110 (113)
T ss_dssp             GCEEEEEEECCSSSCCEEEEEEEEEC
T ss_pred             HCEEEEEeeEcCCCCccEEEEEEEEc
Confidence            99999999987   467778888853

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.25  E-value=5.3e-06  Score=76.04  Aligned_cols=78  Identities=24%  Similarity=0.471  Sum_probs=57.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|++++.+     |.  .+.++.....    -|.|.+++.+|+|.|.|.+.|
T Consensus       200 ~~~~~~~g~~v~l~C~~~g~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  269 (284)
T 2rik_A          200 HPVETLKGADVHLECELQGTPP---FQVSWHKDKRE-----LR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN  269 (284)
T ss_dssp             CCEEECTTCCEEEEEECBSSSC---CEEEEEETTEE-----EC--BTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcceecCCCeEEEEEEEEecCC---CEEEEEECCEE-----Cc--CCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            3466788999999999875543   68999998754     43  3333333222    488999999999999999987


Q ss_pred             ---eeeEEEeeeecc
Q psy10772        356 ---TVLCTHNLTVDA  367 (378)
Q Consensus       356 ---~~l~~~~~~v~~  367 (378)
                         ..-++..|+|.+
T Consensus       270 ~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          270 DVGSYTCVGSITLKA  284 (284)
T ss_dssp             TTEEEEEEEEEEECC
T ss_pred             CCCceeEEEEEEEcC
Confidence               666777777753

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.25  E-value=2.8e-06  Score=71.53  Aligned_cols=84  Identities=17%  Similarity=0.300  Sum_probs=57.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.     +.+.|+.+........| ...++|+....+|    |.|.+++.+|+|.|.|.+.
T Consensus        24 p~~~~v~~G~~v~L~C~~~~~-----~~v~W~r~~~g~~~~~l-~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~   97 (133)
T 3khq_A           24 PRFAAKKRSSMVKFHCYTNHS-----GALTWFRKRGSQQPQEL-VSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQK   97 (133)
T ss_dssp             CSEEEECTTCCEEEEEEESSS-----SCEEEEEECTTSCCEEC-CCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEES
T ss_pred             CceEEEeCCCeEEEEEEeCCC-----CEEEEEEeCCCCCCEEE-EEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEE
Confidence            456788899999999998654     37999988432221112 1234455544444    9999999999999999998


Q ss_pred             Cee-------eEEEeeeeccc
Q psy10772        355 NTV-------LCTHNLTVDAH  368 (378)
Q Consensus       355 ~~~-------l~~~~~~v~~~  368 (378)
                      |..       -+.-.|+|.+.
T Consensus        98 n~~g~~~~~~g~gt~L~V~~~  118 (133)
T 3khq_A           98 CDSANHNVTDSCGTELLVLGF  118 (133)
T ss_dssp             SCC-------CCCEEEEEC--
T ss_pred             eCCCCcceeECCCEEEEEEec
Confidence            742       24467777763

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.24  E-value=4.4e-06  Score=68.85  Aligned_cols=89  Identities=19%  Similarity=0.227  Sum_probs=58.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---------------------ccC--cceEeec--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---------------------RSD--KFIRTVD--  333 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---------------------~~~--~~~~~~~--  333 (378)
                      .+.+.+.+|+++.|+|....+...+.+.|.|+.+........|..                     .++  .|+....  
T Consensus        11 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   90 (135)
T 1xt5_A           11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   90 (135)
T ss_dssp             CSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTT
T ss_pred             CceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCC
Confidence            456789999999999986532223345799999865422111110                     011  4444332  


Q ss_pred             -CceEEeeecCCCCeEEEEEeCCe--------eeEEEeeeecc
Q psy10772        334 -GGLVIMAVEELDAGKYDCWLGNT--------VLCTHNLTVDA  367 (378)
Q Consensus       334 -~GLlI~~v~~~DsG~Y~C~~~~~--------~l~~~~~~v~~  367 (378)
                       .-|.|.+|+.+|+|.|.|...+.        ...+-.|.|.+
T Consensus        91 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           91 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             CCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence             34999999999999999998862        23677777765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.24  E-value=1.7e-06  Score=75.34  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|..- +...+.+.|+|++++..-..+   +.....++|+.+..+| |.|.+|+.+|+|.|.|.+.|
T Consensus         4 ~~v~~~~G~~v~L~c~~~-~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNF-QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEEEETTSCEEECCTTC-CCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCC-CcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEe
Confidence            457889999999999421 211223479999876420000   0011234555554444 99999999999999999986


Q ss_pred             ---e--eeEEEeeeecc
Q psy10772        356 ---T--VLCTHNLTVDA  367 (378)
Q Consensus       356 ---~--~l~~~~~~v~~  367 (378)
                         .  .-....|.|..
T Consensus        83 ~~g~~~~~~~~~l~V~~   99 (176)
T 1hng_A           83 TNGTRILNKALDLRILE   99 (176)
T ss_dssp             TTCCEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEEEeC
Confidence               2  24556777765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.23  E-value=7.4e-06  Score=70.40  Aligned_cols=124  Identities=20%  Similarity=0.193  Sum_probs=74.6

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..+...|   .+.|++.. -...|.... +...+....     ..-........+.+..|+++.|.|...+.+.  
T Consensus        64 ~L~i~~~~~~d---~G~Y~C~~-~n~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--  132 (197)
T 3lcy_A           64 TLTVMTEEQED---EGVYTCIA-TNEVGEVETSSKLLLQATP-----QFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV--  132 (197)
T ss_dssp             EEEEECCSGGG---CEEEEEEE-ECSSCEEEEEEEEEEEEEE-----EECTTSCCCSEEEEETTSCEEEEEEEEEESC--
T ss_pred             EEEEecCCccC---CEEEEEEE-ECCCCceeEEEEEEEEcCC-----CCCCCccCCcceeecCCCeEEEEEEEeeeeC--
Confidence            45555555554   57898874 344555431 111111110     0000001234567788999999999865443  


Q ss_pred             CCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecC-CCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        304 NQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEE-LDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~-~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                       |.++|+.++..     +.  .+.++.....    -|.|.+++. +|+|.|.|.+.|   ..-.+..|.|.+
T Consensus       133 -p~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          133 -PAMTWFHGQKL-----LQ--NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             -CEEEEEETTEE-----CC--CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             -CeeEEeECCEE-----CC--CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence             68999987653     32  3334333332    399999985 899999999988   566677777654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.21  E-value=2e-06  Score=74.20  Aligned_cols=76  Identities=24%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++.+     +.  .+.++....+    -|.|.+++..|+|.|.|.+.|
T Consensus       111 ~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  180 (194)
T 2a38_A          111 QSMTVRQGSQVRLQVRVTGIPT---PVVKFYRDGAE-----IQ--SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN  180 (194)
T ss_dssp             CCEEECTTEEEEEEEEEEEESC---CEEEEEETTEE-----CC--CSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             ccEEEcCCCEEEEEEEEEEecC---CeEEEEECCEE-----CC--CCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEe
Confidence            3567888999999999875443   57999998754     32  3333333333    399999999999999999987


Q ss_pred             ---eeeEEEeeee
Q psy10772        356 ---TVLCTHNLTV  365 (378)
Q Consensus       356 ---~~l~~~~~~v  365 (378)
                         ..-.+..|.|
T Consensus       181 ~~g~~~~~~~l~V  193 (194)
T 2a38_A          181 SVGRATSTAELLV  193 (194)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEE
Confidence               4455555555

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.21  E-value=7.5e-06  Score=72.22  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=58.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++..     +.. .+.++...+.-|.|.+++.+|+|.|.|.+.|   .
T Consensus       118 ~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~-----~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  188 (212)
T 2yd1_A          118 GTRVIEVGHTVLMTCKAIGNPT---PNIYWIKNQTK-----VDM-SNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT  188 (212)
T ss_dssp             CCEEEETTCCEEECCEEECSSC---CEEEEEETTEE-----CCT-TSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEeecCCeEEEEEEeccCCC---CeEEEEECCeE-----ccc-CCCeEEccCCeEEEccCChhhCEEEEEEeecCCCc
Confidence            4567788999999999875543   57999998754     321 2334555566799999999999999999987   3


Q ss_pred             eeEE-Eeeeeccc
Q psy10772        357 VLCT-HNLTVDAH  368 (378)
Q Consensus       357 ~l~~-~~~~v~~~  368 (378)
                      ..++ ..|.|...
T Consensus       189 ~~s~~~~l~V~~~  201 (212)
T 2yd1_A          189 EHSKATNLYVKVR  201 (212)
T ss_dssp             EECCCEEEEEEC-
T ss_pred             eeEEEEEEEEEec
Confidence            3332 67777654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.19  E-value=1.4e-06  Score=75.22  Aligned_cols=78  Identities=19%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCCee-
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGNTV-  357 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~~~-  357 (378)
                      ....+.+|+++.|.|...+.+.   |.++|+.++..     +....+.++... +..|.|.+++.+|+|.|.|.+.|.. 
T Consensus       108 ~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          108 TPQEFKEGEDAVIVCDVVSSLP---PTIIWKHKGRD-----VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             SSEECCTTSCEEECCEEECSSC---CEEEEEETTEE-----GGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CcEeecCCCeEEEEEEECCCCC---CEEEEEECCEE-----eeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence            3456778999999999875443   68999998754     322223344443 4459999999999999999999833 


Q ss_pred             --eEEEeeee
Q psy10772        358 --LCTHNLTV  365 (378)
Q Consensus       358 --l~~~~~~v  365 (378)
                        +.+..++|
T Consensus       180 ~~~~~~~i~v  189 (191)
T 1epf_A          180 GEINFKDIQV  189 (191)
T ss_dssp             TEEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence              55555554

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.19  E-value=4.8e-06  Score=67.23  Aligned_cols=73  Identities=14%  Similarity=0.230  Sum_probs=49.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-----eccCcceEeecC-------ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-----FRSDKFIRTVDG-------GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-----~~~~~~~~~~~~-------GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|......    +.|.|+.+....+...|.     ...+.|+....+       -|.|.+|+.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds   83 (113)
T 1h5b_A            8 PSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             CCEEEEecCCcEEEEEEECCCC----ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC
Confidence            3457889999999999986432    379999875332221111     012334444332       499999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        84 G~Y~C~~~n   92 (113)
T 1h5b_A           84 GTYFCAAEA   92 (113)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999999876

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.19  E-value=1e-06  Score=73.47  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c--cCcceEe-------ecCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R--SDKFIRT-------VDGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~--~~~~~~~-------~~~GLlI~~v~~~DsG~  348 (378)
                      ...+.+.+|+++.|.|...+.+.   |.|.|+.++.......... .  ...++..       ...-|.|.+++.+|+|.
T Consensus        28 p~~~~v~~G~~v~L~C~~~g~P~---p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  104 (137)
T 3qr2_A           28 PLSQQRWVGGSVELHCEAVGSPV---PEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGT  104 (137)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSC---CEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEE
T ss_pred             CCCEEEeCCCCEEEEEEEeeecC---CeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEE
Confidence            45678889999999999876543   6899999875411000000 0  0011111       23459999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.|
T Consensus       105 Y~C~a~N  111 (137)
T 3qr2_A          105 YECRASN  111 (137)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999987

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.18  E-value=4.5e-06  Score=77.54  Aligned_cols=78  Identities=23%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC-----ceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG-----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~-----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|++++.+     |.  .+.++.....     -|.|.+++..|+|.|.|.+.
T Consensus       230 ~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~-----~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  299 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVWGDPP---PEVSWLKNEKA-----LA--SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  299 (317)
T ss_dssp             SEEEEETTSBBCEEEEEECSSC---CEEEEEESSSE-----EC--CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEE
T ss_pred             ccEEEEcCCEEEEEEEEecCCC---CEEEEEECCEe-----CC--CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            3567889999999999875544   58999998764     43  3444333322     49999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|..
T Consensus       300 N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          300 NKYGSETSDFTVSVFI  315 (317)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEc
Confidence            7   566777777753

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.18  E-value=1.3e-06  Score=70.49  Aligned_cols=69  Identities=19%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc----CcceEeecCceEEee-----ecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS----DKFIRTVDGGLVIMA-----VEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~----~~~~~~~~~GLlI~~-----v~~~DsG~Y  349 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++.+     +....    ..+....++.+.+..     ++.+|+|.|
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~P~---p~v~W~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y   87 (117)
T 2v9t_A           16 PSDLIVSKGEPATLNCKAEGRPT---PTIEWYKGGER-----VETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (117)
T ss_dssp             CCCEEECTTCCEEECCEEEEESC---CEEEEEETTEE-----CCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEE
T ss_pred             CCCEEEcCCCcEEEEEECCccCC---CeEEEEECCEe-----ccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEE
Confidence            34677889999999999876544   67999998754     32111    012223344455554     479999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|.+.|
T Consensus        88 ~C~a~N   93 (117)
T 2v9t_A           88 VCVARN   93 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999997

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.17  E-value=3.4e-06  Score=74.65  Aligned_cols=83  Identities=19%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE--ecccCceeeEe--------eccCcceEeecCc-eEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH--YSKDKGRYQIK--------FRSDKFIRTVDGG-LVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~--~~~~~~~~~l~--------~~~~~~~~~~~~G-LlI~~v~~~DsG  347 (378)
                      ...+.+..|+++.|.|... +..-+.+.|+|++  ++..     |.        ...++|+....+| |.|.+|+..|+|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~-~~~~~~~~i~W~k~~~~~~-----i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG   79 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSF-QMSDDIDDIKWEKTSDKKK-----IAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD   79 (182)
T ss_dssp             CEEEEEETTSCEEECCTTC-CCCSSEEEEEEEEGGGCCE-----EEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCE
T ss_pred             ccEEEEecCCCEEEeCCcc-cccCcCCEEEEEECCCCcE-----EEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCE
Confidence            3568899999999999431 2111224799998  6542     31        0134565555555 999999999999


Q ss_pred             EEEEEeCCe-----eeEEEeeeecc
Q psy10772        348 KYDCWLGNT-----VLCTHNLTVDA  367 (378)
Q Consensus       348 ~Y~C~~~~~-----~l~~~~~~v~~  367 (378)
                      .|.|.+.+.     .-..+.|.|.+
T Consensus        80 ~Y~c~~~n~~g~~~~~~~~~L~V~~  104 (182)
T 1hnf_A           80 IYKVSIYDTKGKNVLEKIFDLKIQE  104 (182)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCceeEEEEEEEEEcC
Confidence            999998651     12567787765

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.17  E-value=4.4e-06  Score=66.96  Aligned_cols=88  Identities=15%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCc--eeeEee------------ccCcceEeec-------Cce
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKG--RYQIKF------------RSDKFIRTVD-------GGL  336 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~--~~~l~~------------~~~~~~~~~~-------~GL  336 (378)
                      ...+.+.+|+++.|+|.....+.. ..+.|.|++++....  ...+..            ....|+....       .-|
T Consensus        12 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL   91 (126)
T 1eaj_A           12 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   91 (126)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEE
Confidence            466789999999999998654331 112499998863210  011110            1123443333       349


Q ss_pred             EEeeecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772        337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       337 lI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~  366 (378)
                      .|.+|+.+|+|.|.|...+   ..-....|+|.
T Consensus        92 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           92 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            9999999999999999876   33456666664

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.16  E-value=5e-06  Score=70.07  Aligned_cols=84  Identities=24%  Similarity=0.309  Sum_probs=56.1

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc----CceeeEeeccCcceEee-----cCceEEeeecCCCCeE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD----KGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGK  348 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~----~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~  348 (378)
                      ..+.+.+.+|+++.|.|...+.+.   +.|.|+..+..    +....+   .++|+...     ...|.|.+|+.+|+|.
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~---~~i~W~~~~~~~i~~~~~~~~---~~~r~~~~~~~~~~~~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHED---SSLQWSNPAQQTLYFGEKRAL---RDNRIQLVTSTPHELSISISNVALADEGE  117 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTT---CCEEEECTTCCEEEETTEECS---CCTTEEEEEECSSEEEEEECSCCGGGCEE
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCC---cEEEEECCCCcEEEECCceec---ccCCEEEecCCCCeEEEEECCCChhhCEE
Confidence            356788999999999999875543   57999832211    000001   23343332     2459999999999999


Q ss_pred             EEEEeCC--eeeEEEeeeecc
Q psy10772        349 YDCWLGN--TVLCTHNLTVDA  367 (378)
Q Consensus       349 Y~C~~~~--~~l~~~~~~v~~  367 (378)
                      |.|.+.+  ..-....|+|.+
T Consensus       118 Y~C~~~n~~~~~~~~~L~V~~  138 (145)
T 1z9m_A          118 YTCSIFTMPVRTAKSLVTVLG  138 (145)
T ss_dssp             EEEEECSSSCEEEEEEEEEEC
T ss_pred             EEEEEEcCCCceEEEEEEEEe
Confidence            9999987  345556677765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.15  E-value=3.5e-06  Score=74.70  Aligned_cols=80  Identities=20%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+.+.+|+++.|.|...+.+.   |.|+|++++..     |......++...    ..-|.|.+++..|+|.|.|.+.|
T Consensus        26 ~~~~~~~G~~v~l~C~~~g~p~---p~i~W~~~g~~-----l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   97 (215)
T 3mtr_A           26 VAVYTWEGNQVNITCEVFAYPS---ATISWFRDGQL-----LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN   97 (215)
T ss_dssp             SEEEECTTCCEEEEEEEEEESC---CEEEEEETTEE-----SSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEEC
T ss_pred             ceEEEECCCCEEEEEEEeecCC---CEEEEEECCeE-----CCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEE
Confidence            4578889999999999876544   58999998754     321111233332    23499999999999999999987


Q ss_pred             ---eeeEEEeeeecc
Q psy10772        356 ---TVLCTHNLTVDA  367 (378)
Q Consensus       356 ---~~l~~~~~~v~~  367 (378)
                         ..-++..|.|.+
T Consensus        98 ~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           98 RIGQESLEFILVQAD  112 (215)
T ss_dssp             SSCEEEEEEEEEECC
T ss_pred             CCCceEEEEEEEECC
Confidence               555667777754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.15  E-value=3.6e-06  Score=72.87  Aligned_cols=83  Identities=25%  Similarity=0.336  Sum_probs=58.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecC---ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDG---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++.+     +.. .+.++..  ..+   -|.|.+++..|+|.|.|.+
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~-----~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A           11 LRNLNVRYQSNATLVCKVTGHPK---PIVKWYRQGKE-----IIA-DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSC---CEEEEEETTEE-----CCC-CSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCccEEcCCCEEEEEEEEeecCC---CEEEEEECCEE-----Ccc-CCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            35678899999999999875443   57999998754     321 1222222  233   4999999999999999998


Q ss_pred             CC---eeeEEEeeeeccccc
Q psy10772        354 GN---TVLCTHNLTVDAHSN  370 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~~~c  370 (378)
                      .+   ....+..|.|...+.
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~  101 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAK  101 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEcCCCc
Confidence            76   445666777765443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.15  E-value=7.8e-06  Score=71.13  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-----eEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-----QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-----~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      ....+.+.+|+++.|.|...+.+.   +.+.|+.++.....+     .+....+.++......|.|.+++..|+|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~   83 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSS---PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM   83 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSS---EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCC---cEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEE
Confidence            346678999999999999875333   589999987641000     011123456666677899999999999999999


Q ss_pred             eCC-----eeeEEEeeeeccc
Q psy10772        353 LGN-----TVLCTHNLTVDAH  368 (378)
Q Consensus       353 ~~~-----~~l~~~~~~v~~~  368 (378)
                      +.+     ..-....|.|...
T Consensus        84 ~~~~~g~~~~~~~~~l~V~~~  104 (212)
T 1f97_A           84 VSEEGGQNYGEVSIHLTVLVP  104 (212)
T ss_dssp             EEETTSSSEEEEEEEEEEEBC
T ss_pred             EEccCCCcccEEEEEEEEEcC
Confidence            876     3456667777654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.15  E-value=4.6e-06  Score=72.55  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=53.1

Q ss_pred             EEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772        284 VTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLC  359 (378)
Q Consensus       284 ~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~  359 (378)
                      +.+|+++.|.|.. .+.+   .|.++|+.++...   .+.  ...+....+.-|.|.+++.+|+|.|.|.+.|   ..-+
T Consensus       133 ~~~g~~v~l~C~~~~g~p---~~~v~W~~~~~~~---~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~  204 (214)
T 3jz7_A          133 EEIGNDFKLKCEPKEGSL---PLQFEWQKLSDSQ---TMP--TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC  204 (214)
T ss_dssp             CBTTCCEEEEEECSBCCS---SCEEEEEECSTTC---CCC--GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eecCCcEEEEecCCCCCC---CCEEEEEECCCCC---ccC--ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEE
Confidence            6779999999998 4333   3689999865431   121  2222223345699999999999999999988   5667


Q ss_pred             EEeeeec
Q psy10772        360 THNLTVD  366 (378)
Q Consensus       360 ~~~~~v~  366 (378)
                      +..|.|.
T Consensus       205 ~~~l~V~  211 (214)
T 3jz7_A          205 MLRLDVV  211 (214)
T ss_dssp             EEEECCB
T ss_pred             EEEEEEe
Confidence            7777765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.14  E-value=9.5e-06  Score=70.17  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecC----ceEEeeec-CCCCeEEEEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDG----GLVIMAVE-ELDAGKYDCWL  353 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~----GLlI~~v~-~~DsG~Y~C~~  353 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++...   .+.. ..+.++....+    -|.|.+++ ..|+|.|.|.+
T Consensus       100 ~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~g~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  173 (190)
T 2wv3_A          100 RSENKNEGQDAMMYCKSVGYPH---PEWMWRKKENGV---FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA  173 (190)
T ss_dssp             SEEEEETTSCEEEEEEEECSSC---CEEEEEEEETTE---EEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEE
T ss_pred             CcceeeCCCcEEEEEEeCccCC---CceEEEEcCCCc---eeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEE
Confidence            4567889999999999875543   589999853220   1222 13334444332    29999999 79999999999


Q ss_pred             CC---eeeEEEeeeec
Q psy10772        354 GN---TVLCTHNLTVD  366 (378)
Q Consensus       354 ~~---~~l~~~~~~v~  366 (378)
                      .|   ..-++..|.|.
T Consensus       174 ~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          174 TNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECSSCEEEEEEEEEEE
T ss_pred             EecCCcceeEEEEEEE
Confidence            87   55566666653

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.14  E-value=8.4e-06  Score=65.44  Aligned_cols=74  Identities=14%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|+|.....+   .+.|.|+.+....+...|-.       ..++|+....    --|.|.+++.+|+|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   86 (109)
T 2q20_A           10 PSSLSASVGDRVTITCQASQDI---SNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA   86 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCEEEecCCCcEEEEEeeccCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCE
Confidence            3567899999999999986543   35799998753222111210       0123444321    13999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus        87 ~Y~C~~~~   94 (109)
T 2q20_A           87 TYYCQQYD   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEee
Confidence            99999986

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.14  E-value=4.8e-06  Score=71.53  Aligned_cols=85  Identities=18%  Similarity=0.287  Sum_probs=55.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeec-CCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVE-ELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~-~~DsG~Y~C~~~  354 (378)
                      ....+.+|+++.|.|...+.+.  .|.++|+........ .+....+.++....+    -|.|.+++ ..|+|.|.|.+.
T Consensus        91 ~~~~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~  167 (184)
T 3b5h_A           91 SSEHINEGETAMLVCKSESVPP--VTDWAWYKITDSEDK-ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT  167 (184)
T ss_dssp             SEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCE-ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEE
T ss_pred             CCcEEcCCCcEEEEEEECCCCC--CCeEEEEEcCCCCCE-EeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEE
Confidence            4567888999999999865541  358999983211110 121112234443333    39999999 999999999999


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|.+
T Consensus       168 N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          168 SSKGSDQAIITLRVRS  183 (184)
T ss_dssp             ETTEEEEEEEEEEEC-
T ss_pred             eCCCcceEEEEEEEec
Confidence            7   556667777653

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.14  E-value=4.3e-06  Score=67.75  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--------ecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        288 QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--------VDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       288 ~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--------~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ....|.|...+.+.   |.++|+.++.+     +.  .+.++..        ...-|.|.+++.+|+|.|.|.+.|   .
T Consensus        21 ~~~~l~C~~~g~P~---p~i~W~k~g~~-----l~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~   90 (118)
T 1wwc_A           21 LEHCIEFVVRGNPP---PTLHWLHNGQP-----LR--ESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT   90 (118)
T ss_dssp             CEEEEEEEEECSSC---CEEEEEETTEE-----CC--CSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEE
T ss_pred             cceEEEEEeeeeCC---CeEEEEECCEE-----CC--CCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCe
Confidence            45678899987554   68999998754     32  2222111        233599999999999999999998   5


Q ss_pred             eeEEEeeeecccc
Q psy10772        357 VLCTHNLTVDAHS  369 (378)
Q Consensus       357 ~l~~~~~~v~~~~  369 (378)
                      ..++..|.|...+
T Consensus        91 ~~~~~~l~v~~~P  103 (118)
T 1wwc_A           91 ANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEECCSCCC
T ss_pred             EeeEEEEEEccCC
Confidence            6667776665543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.13  E-value=3.6e-06  Score=74.28  Aligned_cols=82  Identities=22%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc----eEe-ecCceEEeeecCCCCeEEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF----IRT-VDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~----~~~-~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      ..+.+.+.+|+++.|.|...+.+.   +.++|++++.+     +.  .+.+    ... ...-|.|.+++..|+|.|.|.
T Consensus        25 ~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (231)
T 3ojm_B           25 EKRLHAVPAANTVKFRCPAGGNPM---PTMRWLKNGKE-----FK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   94 (231)
T ss_dssp             CCSCEEEETTSCEEEECCEEEESC---CEEEEEETTEE-----CC--GGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CceeEEEccCCCEEEEEecccCCC---CeEEEEECCcc-----cc--ccccccceeeecCcceEEEecCCcccCEEEEEE
Confidence            346788999999999999875433   57999998754     32  1111    111 222499999999999999999


Q ss_pred             eCC---eeeEEEeeeecccc
Q psy10772        353 LGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~~  369 (378)
                      +.+   ..-....|.|....
T Consensus        95 ~~n~~~~~~~~~~l~V~~~~  114 (231)
T 3ojm_B           95 VENEYGSINHTYHLDVVERS  114 (231)
T ss_dssp             EEETTEEEEEEEEEEEECCC
T ss_pred             EecccCcccccEEEEEEcCC
Confidence            976   44566777776543

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.12  E-value=5.8e-06  Score=67.74  Aligned_cols=86  Identities=23%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e---ccCcceEeecCc-eEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F---RSDKFIRTVDGG-LVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~---~~~~~~~~~~~G-LlI~~v~~~D  345 (378)
                      .....+.+|+++.|.|.. .|.++  +.++|+..........|.         .   .-.+|..+..+| |+|.+|+.+|
T Consensus         7 ~~p~~~~~G~~v~L~~~~-~p~~~--~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D   83 (111)
T 2qsq_A            7 STPFNVAEGKEVLLLVHN-LPQHL--FGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQND   83 (111)
T ss_dssp             EESSEEETTSCEEEEEES-CCSSE--EEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGG
T ss_pred             eccceeccCCCEEEEEeC-CCCCc--eEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccC
Confidence            334578999999999974 24332  258997643211000111         0   114566666656 9999999999


Q ss_pred             CeEEEEEeCCe----eeEEEeeeecc
Q psy10772        346 AGKYDCWLGNT----VLCTHNLTVDA  367 (378)
Q Consensus       346 sG~Y~C~~~~~----~l~~~~~~v~~  367 (378)
                      +|.|.|...+.    .-+...|.|..
T Consensus        84 ~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           84 AGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             CEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             CeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            99999998862    34556676653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.12  E-value=6.3e-06  Score=70.54  Aligned_cols=80  Identities=28%  Similarity=0.352  Sum_probs=56.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--ee----cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TV----DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~----~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++..     +.  ...+..  ..    ..-|.|.+++..|+|.|.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~p~---~~v~W~k~~~~-----~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   78 (182)
T 1rhf_A            9 PVKLTVSQGQPVKLNCSVEGMEE---PDIQWVKDGAV-----VQ--NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ   78 (182)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSS---CCEEEEETTEE-----CC--SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CcceEEeCCCcEEEEEEEeCCCC---CeEEEEECCee-----cC--CCCceEEEecCCCceEEEEEeecCcccCeEEEEE
Confidence            45678999999999999875333   58999987654     22  122211  11    13488999999999999999


Q ss_pred             eCCe----eeEEEeeeeccc
Q psy10772        353 LGNT----VLCTHNLTVDAH  368 (378)
Q Consensus       353 ~~~~----~l~~~~~~v~~~  368 (378)
                      +.+.    .-....|.|...
T Consensus        79 ~~~~~~~~~~~~~~l~V~~~   98 (182)
T 1rhf_A           79 VEDGGETEISQPVWLTVEGV   98 (182)
T ss_dssp             ESSCTTCEECCCEEEEEECS
T ss_pred             EEcCCCcEEEEEEEEEEecC
Confidence            9873    335666777643

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.12  E-value=3.8e-06  Score=80.58  Aligned_cols=76  Identities=24%  Similarity=0.390  Sum_probs=60.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      ...+..|+++.|.|...+.+.   |.++|++++.+     |.  .+.++...+.-|.|.+++.+|+|.|.|.+.|   ..
T Consensus       303 ~~~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~-----~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  372 (382)
T 1cs6_A          303 DTEADIGSDLRWSCVASGKPR---PAVRWLRDGQP-----LA--SQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV  372 (382)
T ss_dssp             CEEEETTCCEEEECEEEEESC---CEEEEEETTEE-----CC--CCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccEEcCCCeEEEEEEeeeecC---CEEEEEECCEE-----CC--CCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeE
Confidence            456788999999999876544   58999998754     43  4556666677799999999999999999987   56


Q ss_pred             eEEEeeeec
Q psy10772        358 LCTHNLTVD  366 (378)
Q Consensus       358 l~~~~~~v~  366 (378)
                      -++..|.|.
T Consensus       373 ~~~~~l~V~  381 (382)
T 1cs6_A          373 YASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            677777775

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.11  E-value=2e-06  Score=67.54  Aligned_cols=74  Identities=18%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-------eecCceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-------TVDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-------~~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      ...+.+.+|+++.|.|...+.+.. .+.++|+.++.+.......  ...++.       ....-|.|.+++..|+|.|.|
T Consensus        17 p~~~~v~~G~~v~L~C~~~~~~~~-~~~i~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   93 (112)
T 3so5_A           17 PETQSAIXGSDVSFTCSAASSSDS-PMTFAWXXDNEALQDAEME--NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQC   93 (112)
T ss_dssp             CCCEEECTTCCEEEEEEEEESCCC-CCEEEEEETTEECTTCEEE--EEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEecCCCC-CEEEEEccCCccccccccc--ceeeeeccCCCccccceEEEEeccccccCCeEEE
Confidence            345688899999999998744332 2579999887541100000  001111       112459999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      .+.|
T Consensus        94 ~a~n   97 (112)
T 3so5_A           94 VISN   97 (112)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9987

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.11  E-value=8.6e-06  Score=65.26  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=49.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|.....+   .+.|.|+.+....+...|...       ..+|+.....    -|.|.+|+.+|+|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   85 (108)
T 1qfw_M            9 KSMSMSVGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFAD   85 (108)
T ss_dssp             SCEECCTTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSE
T ss_pred             CeEEEcCCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEE
Confidence            457788999999999986443   247999987532221112100       1234443322    39999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus        86 Y~C~~~~   92 (108)
T 1qfw_M           86 YHCGQTY   92 (108)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcc
Confidence            9999986

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.11  E-value=8.4e-06  Score=65.19  Aligned_cols=73  Identities=16%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|.....+   .+.|.|+.+...++...|-..       ..+|+.....    -|.|.+++.+|+|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   85 (107)
T 1i8k_A            9 ASLSVATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (107)
T ss_dssp             SEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEEecCCCCEEEEEEECCCC---CCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEE
Confidence            457888999999999986432   357999987532221112100       1234443222    39999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus        86 Y~C~~~~   92 (107)
T 1i8k_A           86 YYCLQSF   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEEee
Confidence            9999986

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.10  E-value=1.3e-05  Score=66.76  Aligned_cols=86  Identities=16%  Similarity=0.307  Sum_probs=56.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e------------ccCcceEeecC-------ceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F------------RSDKFIRTVDG-------GLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~------------~~~~~~~~~~~-------GLlI  338 (378)
                      ...+.+..|+++.|+|.....+....+.|.|+.++...   .+. .            .-.+|+....+       -|.|
T Consensus        13 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~---~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   89 (139)
T 1pko_A           13 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSR---VVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRI   89 (139)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CC---EEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEE
T ss_pred             CCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCc---eEEEEeCCcccccccCcccCCceEEccccccCCeEEEEE
Confidence            44678999999999999864432222479999876421   010 0            01234433221       3999


Q ss_pred             eeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        339 MAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      .+|+.+|+|.|.|.+.+   ..-+...|.|.+
T Consensus        90 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  121 (139)
T 1pko_A           90 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVED  121 (139)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCCHHHCEEEEEEEEcCCCceEEEEEEEEec
Confidence            99999999999999986   344667788763

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.09  E-value=3.6e-06  Score=72.45  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=54.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCCe---
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGNT---  356 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~~---  356 (378)
                      .+.+.+|+++.|.|...+.+.   +.++|+.++..     +.  .+.++.. ....|.|.+++..|+|.|.|.+.|.   
T Consensus       109 ~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  178 (192)
T 2iep_A          109 NVKIIEGLKAVLPCTTMGNPK---PSVSWIKGDSA-----LR--ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT  178 (192)
T ss_dssp             CEEEETTSCEEECCEEEEESC---CEEEEEETTEE-----CC--CCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceEEeCCCcEEEEEEEeccCC---ceEEEEeCCEE-----cc--CCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCc
Confidence            467888999999999876544   57999988653     32  3334333 3445999999999999999999872   


Q ss_pred             e-eEEEeeeecc
Q psy10772        357 V-LCTHNLTVDA  367 (378)
Q Consensus       357 ~-l~~~~~~v~~  367 (378)
                      . -.+..|.|..
T Consensus       179 ~~s~~~~l~V~~  190 (192)
T 2iep_A          179 AYSKLVKLEVEV  190 (192)
T ss_dssp             EECCCEEEEEEC
T ss_pred             EEEEEEEEEEEe
Confidence            2 2235666653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.09  E-value=1.4e-05  Score=70.42  Aligned_cols=91  Identities=19%  Similarity=0.268  Sum_probs=57.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-----------CcceEee-cC---ceEEeeecCCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-----------DKFIRTV-DG---GLVIMAVEELD  345 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-----------~~~~~~~-~~---GLlI~~v~~~D  345 (378)
                      .+.+.+|+++.|.|......  +.+.|.|+.+........+....           .+|+... ..   -|.|.+|+.+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQH--STYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPED   86 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEECCCCcEEEEEECCCCC--CCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCccc
Confidence            67889999999999997652  33589998864221111111001           1233321 22   29999999999


Q ss_pred             CeEEEEEeCCee--------eEEEeeeecccccCCC
Q psy10772        346 AGKYDCWLGNTV--------LCTHNLTVDAHSNVAD  373 (378)
Q Consensus       346 sG~Y~C~~~~~~--------l~~~~~~v~~~~c~~~  373 (378)
                      +|.|.|.+.+..        -....|+|....-.+|
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P  122 (218)
T 3s96_B           87 EAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTP  122 (218)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCC
T ss_pred             CEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCc
Confidence            999999997643        1234677765443333

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.09  E-value=5.8e-06  Score=79.37  Aligned_cols=73  Identities=29%  Similarity=0.411  Sum_probs=57.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVL  358 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l  358 (378)
                      +.+.+|+++.|.|...+.+.   |.++|++++.+     |.   +.++...++-|.|.+++.+|+|.|.|.+.|   ..-
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~-----~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPA---PNVVWSHNAKP-----LS---GGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY  387 (395)
T ss_dssp             EEECTTSCEEEECEEEEESC---CCCEEEETTEE-----CC---SSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             eEecCCCeEEEEEEECcccC---CeeEEEECCEE-----CC---CCceEEECCEEEEeeCCcccCEEEEEEEEccCCCce
Confidence            67888999999999875444   58999998754     42   335666677899999999999999999987   555


Q ss_pred             EEEeeee
Q psy10772        359 CTHNLTV  365 (378)
Q Consensus       359 ~~~~~~v  365 (378)
                      ++..|.|
T Consensus       388 ~~~~l~V  394 (395)
T 1bih_A          388 FETLVQV  394 (395)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.08  E-value=4e-06  Score=71.76  Aligned_cols=76  Identities=21%  Similarity=0.279  Sum_probs=54.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC---
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ...+.+|+++.|.|...+.+.   |.++|+.++..     +.  .+.++....  .-|.|.+++.+|+|.|.|.+.|   
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~---~~v~W~~~g~~-----~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  176 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPE---PAISWFRNGKL-----IE--ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG  176 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESC---CEEEEEETTEE-----CC--CSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cccccCCCcEEEEEEEccCCC---CeEEEEECCEE-----Cc--CCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCC
Confidence            455677999999999975543   58999988754     32  333333322  3399999999999999999987   


Q ss_pred             eeeEEEeeeec
Q psy10772        356 TVLCTHNLTVD  366 (378)
Q Consensus       356 ~~l~~~~~~v~  366 (378)
                      ..-++..|.|.
T Consensus       177 ~~~~~~~l~V~  187 (189)
T 2v5t_A          177 EDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ceeEEEEEEEE
Confidence            45556666654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.08  E-value=5.7e-06  Score=70.81  Aligned_cols=68  Identities=21%  Similarity=0.354  Sum_probs=47.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   +.+.|+.++..     +....+.++.. .+..|.|.+++..|+|.|.|.+.+
T Consensus        10 ~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A           10 SPQEFKQGEDAEVVCRVSSSPA---PAVSWLYHNEE-----VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             SSEEEETTSCEEECCEEECSSC---CEEEEEC----------CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEEEEEcCCCC---CEEEEEECCcc-----ceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEE
Confidence            4567889999999999865433   57999988754     32212334333 344599999999999999999764

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.08  E-value=2.1e-05  Score=62.98  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=55.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC--ceee--------EeeccCcceEeec------CceEEeee
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK--GRYQ--------IKFRSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~--~~~~--------l~~~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+.+|+++.|+|.......  ...+.|+.+....  ....        +.....+|+....      -.|.|.+|
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   80 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRG--ITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENS   80 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTC--CCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSC
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCC--CcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCC
Confidence            346788999999999999754222  2369999875221  0000        1011233444321      24999999


Q ss_pred             cCCCCeEEEEEeCCe-----eeEEEeeeec
Q psy10772        342 EELDAGKYDCWLGNT-----VLCTHNLTVD  366 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~-----~l~~~~~~v~  366 (378)
                      +.+|+|.|.|...+.     .-....|.|.
T Consensus        81 ~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~  110 (116)
T 2or8_A           81 VESDSGLYCCRVEIPGWFNDQKVTFSLQVK  110 (116)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEEEEEEEEE
T ss_pred             CcccCEEEEEEEEcCCcccccEEEEEEEEC
Confidence            999999999999862     2455566553

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.07  E-value=6.9e-06  Score=68.21  Aligned_cols=90  Identities=14%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC-------ceeeEe---eccCcceEeec-------CceEEee
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-------GRYQIK---FRSDKFIRTVD-------GGLVIMA  340 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~-------~~~~l~---~~~~~~~~~~~-------~GLlI~~  340 (378)
                      ....+.+..|+++.|+|....+.......|.|+.++...       ++....   .+-..|+....       --|.|.+
T Consensus        11 ~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~   90 (125)
T 4gos_A           11 TTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKN   90 (125)
T ss_dssp             EEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESS
T ss_pred             cCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECC
Confidence            345677888999999998753333322358998754321       000000   00112322221       2499999


Q ss_pred             ecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        341 VEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      |+.+|+|.|.|...+   ..-+..+|.|.-
T Consensus        91 v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG~  120 (125)
T 4gos_A           91 VQLTDAGTYKCYIITSKGKGNANLEYKTGH  120 (125)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CChHHCEEEEEEEEeCCCeEEEEEEEEECC
Confidence            999999999999876   445666666654

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.07  E-value=1.4e-05  Score=65.72  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+....+...|-..       ..+|+....    --|.|.+|+.+|+|
T Consensus        10 p~~v~v~~G~~vtL~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   86 (119)
T 2e27_L           10 PSSLSASLGGKVTITCKANQDI---KKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAA   86 (119)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCeEEEeCCCCEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCE
Confidence            3567899999999999986443   257999987532221112100       123444321    13999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus        87 ~Y~C~~~~   94 (119)
T 2e27_L           87 TYYCLQYD   94 (119)
T ss_dssp             EEEEEECG
T ss_pred             EEEEEEcc
Confidence            99999986

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.07  E-value=7.4e-06  Score=70.54  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-CcceEeecCc---eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-DKFIRTVDGG---LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++..     +.... ....+...+|   |.|.+++..|+|.|.|.+.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPV---PEVSWFRDGQV-----ISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEESSSB-----CCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEEECCCEEEEEEEEEecCC---CEEEEEECCEE-----cccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            35678899999999999865433   57999998764     32111 1112222333   9999999999999999997


Q ss_pred             C---eeeEEEeeeec
Q psy10772        355 N---TVLCTHNLTVD  366 (378)
Q Consensus       355 ~---~~l~~~~~~v~  366 (378)
                      +   ....+..|.|.
T Consensus        84 n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           84 NGSGQATSTAELLVK   98 (194)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             cCCceEeEEEEEEEc
Confidence            5   44555666665

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.07  E-value=1.3e-05  Score=65.90  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+....+...|-..       ..+|+....    --|.|.+|+.+|+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   84 (120)
T 1mqk_L            8 PVSLSASVGETVTITCRASENI---YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (120)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCE
Confidence            3567889999999999986443   357999987532221111100       123444321    13999999999999


Q ss_pred             EEEEEeCCe
Q psy10772        348 KYDCWLGNT  356 (378)
Q Consensus       348 ~Y~C~~~~~  356 (378)
                      .|.|.+.+.
T Consensus        85 ~Y~C~~~~~   93 (120)
T 1mqk_L           85 SYYCQHHYG   93 (120)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEEeC
Confidence            999999874

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.07  E-value=6.7e-06  Score=70.71  Aligned_cols=80  Identities=25%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEEeCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++..     +. ..+.++....+|  |.|.+++..|+|.|.|.+.+.
T Consensus        14 ~~~~~~~~G~~v~l~C~~~~~p~---~~i~W~~~~~~-----~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (192)
T 2iep_A           14 LETVDALVEEVATFMCAVESYPQ---PEISWTRNKIL-----IK-LFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG   84 (192)
T ss_dssp             CCEEEEETTSCEEEECCEEEESC---CEEEEEETTEE-----CC-TTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred             ccceeeeCCCcEEEEeeCCCCCC---CeEEEEECCEE-----cc-ccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence            45678899999999999865433   57999987653     32 123344444445  889999999999999999862


Q ss_pred             ----eeEEEeeeecc
Q psy10772        357 ----VLCTHNLTVDA  367 (378)
Q Consensus       357 ----~l~~~~~~v~~  367 (378)
                          .-....|.|..
T Consensus        85 ~~~~~~~~~~l~v~~   99 (192)
T 2iep_A           85 VGGAVESCGALQVKM   99 (192)
T ss_dssp             SSCCEEEEEEEEEEE
T ss_pred             CCceeEeEEEEEEEe
Confidence                23344555543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.07  E-value=8.4e-06  Score=73.12  Aligned_cols=90  Identities=19%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-----------------------eccCcceEeec--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-----------------------FRSDKFIRTVD--  333 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-----------------------~~~~~~~~~~~--  333 (378)
                      .+.+.+.+|+++.|.|...++...+.+.|+|++++....+..+.                       .....|+....  
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            45788999999999999876444445689999987442110010                       01123433332  


Q ss_pred             -CceEEeeecCCCCeEEEEEeCCee--------eEEEeeeeccc
Q psy10772        334 -GGLVIMAVEELDAGKYDCWLGNTV--------LCTHNLTVDAH  368 (378)
Q Consensus       334 -~GLlI~~v~~~DsG~Y~C~~~~~~--------l~~~~~~v~~~  368 (378)
                       ..|.|.+|+.+|+|.|.|.+.+..        -.+..|.|...
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence             369999999999999999998822        34778888764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.06  E-value=5.7e-06  Score=76.62  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC---
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+|+++.|.|...+.+.   | .++|++++.+     |.  .+.++...+  .-|.|.+++.+|+|.|.|.+.|   
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~---~~~v~W~~~g~~-----~~--~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G  300 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKK---ETHIVWYKDERE-----IS--VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG  300 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCS---SCEEEEEETTEE-----EE--EECCC----CEEEEEECSCSGGGCEEEEEEEESTTC
T ss_pred             EEEeCCCEEEEEEEEcCCCC---CCEEEEeeCCEE-----CC--CCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCC
Confidence            67889999999999976443   4 7999998754     43  233333322  2499999999999999999987   


Q ss_pred             eeeEEEeeeec
Q psy10772        356 TVLCTHNLTVD  366 (378)
Q Consensus       356 ~~l~~~~~~v~  366 (378)
                      ..-++..|+|+
T Consensus       301 ~~~~~~~l~i~  311 (312)
T 2y23_A          301 KDKSRLKLVDE  311 (312)
T ss_dssp             CEEEEEEECSC
T ss_pred             ceeeeeEEEec
Confidence            66677777664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.06  E-value=9.6e-06  Score=76.89  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC--------CCCCCCeEEEEecccCceeeEeec---cCcceEeecCceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA--------SMANQPMSWYHYSKDKGRYQIKFR---SDKFIRTVDGGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~--------~La~~~v~W~~~~~~~~~~~l~~~---~~~~~~~~~~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+        .-+.+.|+|+.++..... .....   .+.++...+..|.|.+++.+|+|
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   92 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDL-EEPINFRLPENRISKEKDVLWFRPTLLNDTG   92 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCC-EEECCCCCGGGCEEEETTEEEESSCCGGGCE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcc-cccccccccCceEeecCCEEEEccCChhhCE
Confidence            5678899999999999986432        122358999998743111 11111   34456666777999999999999


Q ss_pred             EEEEEeCC---eeeEEEeeeeccc
Q psy10772        348 KYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       348 ~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                      .|.|.+.|   ..-++..|+|...
T Consensus        93 ~Y~C~a~n~~~~~~~~~~l~V~~~  116 (349)
T 4dep_C           93 NYTCMLRNTTYCSKVAFPLEVVQK  116 (349)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EEEEEEecCCceEEEEEEEEEecC
Confidence            99999987   4455677877653

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.05  E-value=9.3e-06  Score=76.06  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      ..+..|+++.|.|...+.+.   | .|+|++++.+     |.   + .....+.-|.|.+++.+|+|.|.|.+.|   ..
T Consensus       227 ~~~~~g~~v~l~C~~~g~P~---p~~v~W~~~~~~-----l~---~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARSNPE---PTGYNWSTTMGP-----LP---P-FAVAQGAQLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             CEETTCCCEEEEEEEEEESC---CCEEEEEETTBS-----CC---T-TEEEETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             eeecCCCeEEEEEEecCCCC---CcEEEEEECCEE-----CC---C-ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence            34566899999999976544   4 5899998765     42   1 2234456699999999999999999987   66


Q ss_pred             eEEEeeeeccc
Q psy10772        358 LCTHNLTVDAH  368 (378)
Q Consensus       358 l~~~~~~v~~~  368 (378)
                      -++..|.|.+.
T Consensus       295 ~~~~~l~V~~~  305 (313)
T 4fqp_A          295 QAELTVQVKEG  305 (313)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEeC
Confidence            77888888763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.05  E-value=9.5e-06  Score=71.71  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeec--C--ceEEeee-cCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVD--G--GLVIMAV-EELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~--~--GLlI~~v-~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.++|+.++..     +.  .+. ......  .  -|.|.++ +..|+|.|.|.
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~---~~v~W~k~~~~-----~~--~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPR---PKIVWNKKGKK-----VS--NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             cceeEEecCCeEEEEEEEeeCCC---CEEEEEECCcC-----CC--CCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            34578899999999999875443   58999998754     32  222 122222  2  2999999 59999999999


Q ss_pred             eCC---eeeEEEeeeecccc
Q psy10772        353 LGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~~  369 (378)
                      +.+   ..-.+..|+|....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~  102 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLRED  102 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGG
T ss_pred             EEcCCCcEEEEEEEEEeccC
Confidence            987   44566777776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.05  E-value=9.1e-06  Score=79.03  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=62.7

Q ss_pred             CcccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEE
Q psy10772        271 SICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKY  349 (378)
Q Consensus       271 ~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y  349 (378)
                      ..|.. .....+.+.+|+++.|.|.+.+|    .|.|+|+.++.+.    +.. ..+.++...+.-|.|.+|+.+|+|.|
T Consensus       246 ~~C~~-~~~~~v~v~~G~~~~l~C~~~gp----~p~i~W~~~~~~~----~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y  316 (361)
T 2xot_A          246 FNCSE-YKESAWEAHLGDTLTIRCDTKQQ----GMTKVWVSPSNEQ----VLSQGSNGSVSVRNGDLFFKKVQVEDGGVY  316 (361)
T ss_dssp             TTCCS-CCCCCCEEETTCCEEECCCCSST----TCEEEEECTTSCB----CCSCCSSSSEEEETTEEEESSCCTTSCEEE
T ss_pred             ccCCC-ccccCceecCCCeEEEEeEeeCC----CCeEEEEeCCCee----EeecccCCceEeecCeEEEeecCcccCEEE
Confidence            45653 34556789999999999998763    3589999865431    110 12224445455599999999999999


Q ss_pred             EEEeCC---eeeEEEeeeecc
Q psy10772        350 DCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~  367 (378)
                      .|.+.|   ..-++..|+|..
T Consensus       317 ~C~a~N~~g~~~~~~~l~V~~  337 (361)
T 2xot_A          317 TCYAMGETFNETLSVELKVYN  337 (361)
T ss_dssp             EEEEECSSCEEEEEEEEEEES
T ss_pred             EEEEecCCCccEEEEEEEEEe
Confidence            999998   566677777754

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.04  E-value=5.6e-06  Score=72.21  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=58.3

Q ss_pred             eeEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+..|+++.|.|.. .+.+.   |.++|+.++..     |. ..+.++...+..|.|.+++.+|+|.|.|.+.|   
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~---~~v~W~~~~~~-----l~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  189 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPE---PTISWKKDGSP-----LD-DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG  189 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESC---CEEEEEETTEE-----EC-TTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CceEecCCCcEEEEEecCCCCCC---CEEEEEECCcc-----CC-CCcceEEccCCeEEEeeCCHhhCeeEEEEEecccC
Confidence            35678899999999987 44433   58999987653     43 12445566677799999999999999999987   


Q ss_pred             eeeE-EEeeeecccccC
Q psy10772        356 TVLC-THNLTVDAHSNV  371 (378)
Q Consensus       356 ~~l~-~~~~~v~~~~c~  371 (378)
                      .... ...|+|...+-.
T Consensus       190 ~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          190 ERESEVAELTVLERPSF  206 (212)
T ss_dssp             EEECCCEEEEEEC----
T ss_pred             ceecceEEEEEEeCchH
Confidence            2222 367777765433

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.04  E-value=1.7e-05  Score=68.33  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=53.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee----cCc---eEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV----DGG---LVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~----~~G---LlI~~v~  342 (378)
                      +.+.+.+|+++.|.|.....+   .+.++|+.++...   .+..          +-..|+...    .+|   |.|.+++
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~   76 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKK---SIQFHWKNSNQIK---ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK   76 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSS---CCCEEEEETTCCE---EEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCC
T ss_pred             CcEEEeCCCCEEEEEEEcCCC---ceEEEEEeCCccc---eEEecCceEecCChhhCCccccccccccCCeEEEEEecCC
Confidence            467899999999999976333   3589999876420   0100          001222221    223   9999999


Q ss_pred             CCCCeEEEEEeCCeeeEEEeeeecc
Q psy10772        343 ELDAGKYDCWLGNTVLCTHNLTVDA  367 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~~l~~~~~~v~~  367 (378)
                      .+|+|.|.|.+.+.. ....|.|..
T Consensus        77 ~~D~G~Y~C~~~~~~-~~~~l~V~~  100 (184)
T 2ny1_B           77 IEDSDTYICEVEDQK-EEVQLLVFG  100 (184)
T ss_dssp             GGGCEEEEEEETTEE-EEEEEEEEE
T ss_pred             HHHCEEEEEEEEcCC-CcEEEEEEE
Confidence            999999999999853 355666653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.04  E-value=1.3e-05  Score=70.75  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCc---eEEeeecC-CCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGG---LVIMAVEE-LDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~G---LlI~~v~~-~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|+|+.++..     |. ..+.++..  ..+|   |.|.+++. .|+|.|.|.
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~~-----~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A           13 PQNQGVRVGGVASFYCAARGDPP---PSIVWRKNGKK-----VS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSC---CEEEEEETTEE-----CC-TTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCceEEecCCEEEEEEEEccCCC---CeEEEEECCEE-----CC-CCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            45578899999999999875433   58999998754     32 12223222  2344   89999999 999999999


Q ss_pred             eCCe----eeEEEeeeecccc
Q psy10772        353 LGNT----VLCTHNLTVDAHS  369 (378)
Q Consensus       353 ~~~~----~l~~~~~~v~~~~  369 (378)
                      +.+.    .-.+..|+|....
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~  104 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGD  104 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTT
T ss_pred             EEeCCCCeEEeeEEEEEeccc
Confidence            9872    5677888887653

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.03  E-value=1.3e-05  Score=63.70  Aligned_cols=87  Identities=20%  Similarity=0.347  Sum_probs=53.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCC--CCeEEEEecccCcee------eEeeccCcceEee---------cCceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMAN--QPMSWYHYSKDKGRY------QIKFRSDKFIRTV---------DGGLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~--~~v~W~~~~~~~~~~------~l~~~~~~~~~~~---------~~GLlI~~v~~  343 (378)
                      .+.+.+|+++.|+|....+..-+.  ..|.|+.++......      ........|+...         ..-|.|.+|+.
T Consensus         9 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (118)
T 3udw_C            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCG
T ss_pred             eEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecCh
Confidence            378899999999999853321110  138999874321000      0001112233222         23599999999


Q ss_pred             CCCeEEEEEeCC----eeeEEEeeeecc
Q psy10772        344 LDAGKYDCWLGN----TVLCTHNLTVDA  367 (378)
Q Consensus       344 ~DsG~Y~C~~~~----~~l~~~~~~v~~  367 (378)
                      +|+|.|.|...+    ..-....|.|.+
T Consensus        89 ~D~G~Y~C~v~~~~~~~~~~~~~L~V~~  116 (118)
T 3udw_C           89 EDEGNYTCLFVTFPQGSRSVDIWLRVLA  116 (118)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCCCccceEEEEEEe
Confidence            999999999876    444556666654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.03  E-value=2.6e-05  Score=73.28  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..+...|   .+.|++.. -...|....- ...+....  ..+.... ......+.+.+|+++.|.|...+.+.  
T Consensus       181 ~L~i~~v~~~d---~G~Y~C~a-~n~~g~~~~~~~l~V~~~~--~~~p~~~-~~~~~~~~~~~G~~v~l~C~~~g~p~--  251 (334)
T 1ry7_B          181 SLVMESVVPSD---RGNYTCVV-ENKFGSIRQTYTLDVLERS--PHRPILQ-AGLPANQTAVLGSDVEFHCKVYSDAQ--  251 (334)
T ss_dssp             EEEECSCCGGG---CCCEEEEE-EETTEEEEEEEEEEEECCC--CSSCBCC-TTCSCCEEEESSCCEEECCCCBCSSC--
T ss_pred             EEEECCCCccc---CEEEEEEE-EeCCCCEEEEEEEEEecCC--CCCCceE-ecCCCceEEeCCCCEEEEEEEecCCC--
Confidence            45565555554   57899883 3445554321 11111100  0001111 00124567889999999999865443  


Q ss_pred             CCCeEEEE----ecccCceeeEeeccCcceEeec-----------CceEEeeecCCCCeEEEEEeCC---eeeEEEeeee
Q psy10772        304 NQPMSWYH----YSKDKGRYQIKFRSDKFIRTVD-----------GGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       304 ~~~v~W~~----~~~~~~~~~l~~~~~~~~~~~~-----------~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v  365 (378)
                       |.++|++    ++..     +......++....           .-|.|.+++..|+|.|.|.+.|   ..-++..|.|
T Consensus       252 -p~v~W~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  325 (334)
T 1ry7_B          252 -PHIQWLKHVEVNGSK-----VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV  325 (334)
T ss_dssp             -EEEEEEECCCGGGCS-----BCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEE
T ss_pred             -CeEEEEECCcCCCcc-----ccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEE
Confidence             5899998    4443     3211111111111           1399999999999999999987   5667777877


Q ss_pred             ccc
Q psy10772        366 DAH  368 (378)
Q Consensus       366 ~~~  368 (378)
                      ...
T Consensus       326 ~~~  328 (334)
T 1ry7_B          326 LPA  328 (334)
T ss_dssp             ECS
T ss_pred             EEC
Confidence            653

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.03  E-value=1.1e-05  Score=70.48  Aligned_cols=84  Identities=20%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC--CCCCCeEEEEecccCceeeEeeccCcceEee-------cCceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS--MANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-------DGGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-------~~GLlI~~v~~~DsG~Y  349 (378)
                      ...+.+.+|+++.|.|...+.+.  ...+.|+|+..+...    +.  ..+++...       ...|.|.+|+.+|+|.|
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~----~~--~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDT----SL--QSERATLLEEQLPLGKALFHIPSVQVRDSGQY   82 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--C----CC--BCSSCEECGGGGGGTEEEEEECSCCGGGCEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcc----cc--cCCceEEeeccccCCeeEEEECCCCHHHCcEE
Confidence            45678999999999999865542  222479999833210    11  12222222       13599999999999999


Q ss_pred             EEEeCC---eeeEEEeeeeccc
Q psy10772        350 DCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~~  368 (378)
                      .|.+.+   ..-....|.|...
T Consensus        83 ~C~~~~~~~~~~~~~~l~V~~~  104 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLTVKVKAS  104 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBC
T ss_pred             EEEEEeCCCcceEEEEEEecCC
Confidence            999987   3456677777653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.03  E-value=1.1e-05  Score=72.15  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=57.4

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc--Cc-ceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS--DK-FIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~--~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+.+|+++.|.|...+.+.   +.++|+.++.+     +....  .. .......-|.|.+++..|+|.|.|.+.
T Consensus        21 ~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   92 (241)
T 3grw_A           21 DKKLLAVPAANTVRFRCPAAGNPT---PSISWLKNGRE-----FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE   92 (241)
T ss_dssp             SCCEEEEETTSEEEEECCEECSSC---CEEEEEETTEE-----CCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcceEEcCCCeEEEEEEecCCCC---ceeEEEECCcc-----cCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEe
Confidence            345788999999999999865433   58999988754     32101  01 112223459999999999999999997


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      +   ..-.+..|.|..
T Consensus        93 ~~~~~~~~~~~l~V~~  108 (241)
T 3grw_A           93 NKFGSIRQTYTLDVLE  108 (241)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ecCCceEEEEEEEEec
Confidence            6   445666777755

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.02  E-value=2.2e-05  Score=70.11  Aligned_cols=84  Identities=23%  Similarity=0.286  Sum_probs=54.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE----ecccCceeeEeeccCcceE-----------eecCceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYH----YSKDKGRYQIKFRSDKFIR-----------TVDGGLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~----~~~~~~~~~l~~~~~~~~~-----------~~~~GLlI~~v~~~  344 (378)
                      ....+.+|+++.|.|...+.+.   |.+.|+.    ++..     +.. .+....           ....-|.|.+++.+
T Consensus       122 ~~~~~~~g~~v~L~C~~~~~p~---p~v~W~~~~~~~g~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  192 (241)
T 3grw_A          122 ANQTAVLGSDVEFHCKVYSDAQ---PHIQWLKHVEVNGSK-----VGP-DGTPYVTVLKSWISESVEADVRLRLANVSER  192 (241)
T ss_dssp             CSEECCTTCCEEEEEEEECSSC---CEEEEEEECCSSSCS-----SCT-TTCCCEEEEEEEECSBSEEEEEEEECSCCGG
T ss_pred             ccceecCCCEEEEEEEEecCCC---CEEEEEEcccCCCcc-----cCC-CCceeeeeeeEeeeeecCCceEEEECcCCcc
Confidence            4556788999999999976544   5899998    4432     210 111111           12234999999999


Q ss_pred             CCeEEEEEeCC---eeeEEEeeeecccccCC
Q psy10772        345 DAGKYDCWLGN---TVLCTHNLTVDAHSNVA  372 (378)
Q Consensus       345 DsG~Y~C~~~~---~~l~~~~~~v~~~~c~~  372 (378)
                      |+|.|.|.+.|   ..-.+..|.|...+-.+
T Consensus       193 d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          193 DGGEYLCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             cCcEEEEEEecCcceEEEEEEEEecCCCCCC
Confidence            99999999987   66778888887655443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.02  E-value=5.8e-06  Score=75.94  Aligned_cols=80  Identities=29%  Similarity=0.319  Sum_probs=56.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc--CcceEeecCc--eEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS--DKFIRTVDGG--LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~--~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|++++.+     |....  ..++.....+  |.|.+++.+|+|.|.|.+.|
T Consensus       204 ~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~g~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  275 (291)
T 1qz1_A          204 VNATANLGQSVTLVCDADGFPE---PTMSWTKDGEP-----IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN  275 (291)
T ss_dssp             EEEETTSCCCEEEEEEEEEESC---CEEEEEETTEE-----CCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccccccCceEEEEEEEEEeCC---CcEEEEECCEE-----CcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEe
Confidence            3456778999999999876544   58999998754     32111  1234433333  99999999999999999987


Q ss_pred             ---eeeEEEeeeecc
Q psy10772        356 ---TVLCTHNLTVDA  367 (378)
Q Consensus       356 ---~~l~~~~~~v~~  367 (378)
                         ..-++..|.|.+
T Consensus       276 ~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          276 KAGEQDASIHLKVFA  290 (291)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceEEEEEEEEEc
Confidence               556677777653

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.01  E-value=3.3e-05  Score=62.40  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC-CCCCCCeEEEEecccCceee-E-ee-----------ccCcceEee------cCceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA-SMANQPMSWYHYSKDKGRYQ-I-KF-----------RSDKFIRTV------DGGLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~-~La~~~v~W~~~~~~~~~~~-l-~~-----------~~~~~~~~~------~~GLlI  338 (378)
                      .+.+.+.+|+++.|+|....+. ....+.|.|+++........ + ..           ...+|+...      +..|.|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEE
Confidence            3467899999999999976431 11234799998864211000 1 00           012344432      235999


Q ss_pred             eeecCCCCeEEEEEeCCe-----eeEEEeeeecc
Q psy10772        339 MAVEELDAGKYDCWLGNT-----VLCTHNLTVDA  367 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~~-----~l~~~~~~v~~  367 (378)
                      .+|+.+|+|.|.|...+.     .-....|.|.+
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~  119 (124)
T 1neu_A           86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE  119 (124)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred             ccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEec
Confidence            999999999999998873     24567777765

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.01  E-value=1.7e-05  Score=69.74  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee--------eEeecc---CcceEeecC-ceEEeeecCCC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY--------QIKFRS---DKFIRTVDG-GLVIMAVEELD  345 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~--------~l~~~~---~~~~~~~~~-GLlI~~v~~~D  345 (378)
                      ..+.+.+.+|+++.|+|.......  .+.|.|++++..-..+        .+....   .+|+....+ .|.|.+|+.+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D   81 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMED   81 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSC--CCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGG
T ss_pred             CCeEEEEEecCeEEEeccCCCccc--ccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCccc
Confidence            346788999999999998753222  2479999875320000        000000   124333333 49999999999


Q ss_pred             CeEEEEEeCC---eeeEEEeeeecc
Q psy10772        346 AGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       346 sG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      +|.|.|.+.+   .....+.|.|.+
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~  106 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILR  106 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEc
Confidence            9999999987   233466677654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.01  E-value=7e-06  Score=82.18  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEee-cCceEEeeecCCCCeEEEEEeCC-
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      .+.+.+.+|+++.|.|.+.+.+.   |.|+|+.++.+     +.. ....++... ++.|.|.+|+.+|+|.|.|.+.| 
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~---p~i~W~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  463 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPP---PAILWLSPRKH-----LVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANA  463 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESC---CEEEEECTTSC-----BC-------CEECTTSCEEESSCCSTTCEEEEEEEEET
T ss_pred             cccEEEeCCCeEEEEEeccccCC---CEEEEEECCcc-----ccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeC
Confidence            36678999999999999876544   68999988754     211 122334433 44599999999999999999987 


Q ss_pred             --eeeEEEeeeec
Q psy10772        356 --TVLCTHNLTVD  366 (378)
Q Consensus       356 --~~l~~~~~~v~  366 (378)
                        ..-+...|.|.
T Consensus       464 ~g~~~~~~~l~V~  476 (477)
T 2id5_A          464 GGNDSMPAHLHVR  476 (477)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEe
Confidence              44555666664

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.01  E-value=1.5e-05  Score=76.39  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe--cccCceeeEee---ccCcceEeec----CceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY--SKDKGRYQIKF---RSDKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~--~~~~~~~~l~~---~~~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+...+.+|+++.|.|...+.+.   |.|+|+.+  +..     |..   ..+.++....    .-|.|.+++.+|+|.|
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~---p~v~W~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   78 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPI---PEITWKRAVDGFT-----FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY   78 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSC---CEEEEEETTTTEE-----ECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred             cCceEEeCCCeEEEEEEeecccC---CeEEEEeCCCCce-----eccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence            34567889999999999876544   68999988  432     321   0134444432    3499999999999999


Q ss_pred             EEEeCC---eeeEEEeeeecccc
Q psy10772        350 DCWLGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~~~  369 (378)
                      .|.+.|   ..-.+..|+|...+
T Consensus        79 ~C~a~n~~g~~~~~~~l~V~~~P  101 (389)
T 2jll_A           79 DCEAASRIGGHQKSMYLDIEYAP  101 (389)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEE
T ss_pred             EEEEEeCCCCcceEEEEEEEeCC
Confidence            999977   45566777776443

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.00  E-value=1.2e-05  Score=64.82  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee------cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV------DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~------~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...... .+.+.|.|+.+........+ +..+.|+...      .--|.|.+++.+|+|.|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   84 (111)
T 2ywz_A            7 PRTITKETGESLTIKCVLKDHS-CGLSSTTWYRTQLGSTNEKT-ISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQ   84 (111)
T ss_dssp             CSEEEECTTCCEEEEEEEESCS-SCCCEEEEEEEETTCCCCEE-CCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEccCCCEEEEeEECCCC-CCCCEEEEEEeCCCCCceEe-eEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEE
Confidence            3457889999999999986432 13357999987532211111 1123344321      12399999999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +.+
T Consensus        85 ~~~   87 (111)
T 2ywz_A           85 ADY   87 (111)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            875

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.00  E-value=1.3e-05  Score=64.45  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCC-CCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPAS-MANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~-La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      +.+.+.+|+++.|.|.....+. ...+.|.|+.+....+...|-..       ..+|+.....    -|.|.+++.+|+|
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   88 (111)
T 1j05_L            9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCE
Confidence            4577889999999999864430 01247999987532222112110       1235443322    3999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus        89 ~Y~C~~~~   96 (111)
T 1j05_L           89 TYYCQQTN   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            99999986

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.00  E-value=5.8e-06  Score=72.28  Aligned_cols=74  Identities=23%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec-Cc---eEEeeecCCCCeEEEEEeCC---e
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD-GG---LVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~-~G---LlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      .-.++.+.|.|...+.+  +.+.++|++++.+     |.  .++++.... .+   |.|.+++.+|+|.|.|.+.+   .
T Consensus        14 ~c~~~~~~l~C~~~~~~--p~~~i~W~~~g~~-----i~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~   84 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYV--EDLKVNWSHNGSA-----IR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG   84 (212)
T ss_dssp             EECSSEEEEEEEBSSCC--SSCEEEEEETTEE-----CC--CCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             EEcCceEEEEEEEeccC--CCceEEEEECCEE-----cc--CCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc
Confidence            34577888888886532  1358999998754     43  334433322 22   99999999999999999887   3


Q ss_pred             eeEEEeeeec
Q psy10772        357 VLCTHNLTVD  366 (378)
Q Consensus       357 ~l~~~~~~v~  366 (378)
                      ......|.|.
T Consensus        85 ~~~~~~l~v~   94 (212)
T 2r15_A           85 HQKTVDLSGQ   94 (212)
T ss_dssp             EEEEEEECHH
T ss_pred             eEEEEEEEEe
Confidence            3345555443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.99  E-value=1.7e-05  Score=79.00  Aligned_cols=85  Identities=13%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             eEEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCc---eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKG---RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~---~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+.+|+++.|.|...+ ++.   |.|+|++++....   .++.....+.+......-|.|.+|+.+|+|.|.|.+.|.
T Consensus       236 ~~~v~~G~~v~L~C~~~g~~p~---p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          236 QLFLKVGEPLWIRCKAVHVNHG---FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             EEEEETTSCEEEEEEEEESSSC---CCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             ceEEeCCCeEEEEEEEEcCCCC---cEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            567889999999999976 332   5899999876411   000000011222222334999999999999999999998


Q ss_pred             eeEEEeeeeccc
Q psy10772        357 VLCTHNLTVDAH  368 (378)
Q Consensus       357 ~l~~~~~~v~~~  368 (378)
                      .-++..|+|...
T Consensus       313 ~~~~~~L~V~~~  324 (423)
T 3qs7_E          313 PSQSALVTIVEK  324 (423)
T ss_dssp             EEEEEEEEEESS
T ss_pred             CCceEEEEEEeC
Confidence            667777777654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.99  E-value=3.5e-05  Score=70.60  Aligned_cols=122  Identities=16%  Similarity=0.189  Sum_probs=72.5

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE--eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV--KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM  302 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V--~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~L  302 (378)
                      .+.+..+...|   .+.|++. +....|.....  ...+...     +..-   .....+.+.+|+++.|.|...+.+. 
T Consensus        63 ~L~i~~~~~~D---~G~Y~C~-~~n~~g~~~~~~~~l~v~~~-----~~~~---~~~~~~~~~~g~~v~l~C~~~~~p~-  129 (291)
T 1qz1_A           63 TLTIYNANIDD---AGIYKCV-VTAEDGTQSEATVNVKIFQK-----LMFK---NAPTPQEFKEGEDAVIVCDVVSSLP-  129 (291)
T ss_dssp             EEEECSCCGGG---CEEEEEE-EECTTSCEEEEEEEEEEECC-----SEEE---ECCSSEEEETTSCEEECCEEECSSC-
T ss_pred             EEEEecCCCCC---CEEEEEE-EEcCCCCeeEEEEEEEeecc-----cccc---CCCCcccccCCCeEEEEEEeccCCC-
Confidence            45555555554   5789988 44555433211  1111111     1100   1223467889999999999865533 


Q ss_pred             CCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC-----eeeEEEeeeec
Q psy10772        303 ANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN-----TVLCTHNLTVD  366 (378)
Q Consensus       303 a~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~-----~~l~~~~~~v~  366 (378)
                        |.++|++++.+     +....+.++.. .+..|.|.+++..|+|.|.|.+.+     .......|.|.
T Consensus       130 --~~v~W~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~  192 (291)
T 1qz1_A          130 --PTIIWKHKGRD-----VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN  192 (291)
T ss_dssp             --CEEEEEETTSC-----SSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE
T ss_pred             --CEEEEEECCEE-----cccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe
Confidence              58999998764     32112333333 344599999999999999999875     22344455554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.99  E-value=1.3e-05  Score=69.15  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLC  359 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~  359 (378)
                      .+.+|+++.|.|...+.+   .|.++|++++..     +        .....-|.|.+++.+|+|.|.|.+.|   ..-+
T Consensus       108 ~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~~-----~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~  171 (184)
T 2ny1_B          108 HLLQGQSLTLTLESPPGS---SPSVQCRSPRGK-----N--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF  171 (184)
T ss_dssp             EEETTCCEEEEEECCTTC---CCEEEEECTTSC-----E--------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eeecCCCEEEEEEcCCCC---CCEEEEEeCCCc-----c--------ccCceEEEEecCCcCCCeEEEEEEEECCceEEE
Confidence            568899999999986543   468999876542     2        23456799999999999999999986   5556


Q ss_pred             EEeeeeccc
Q psy10772        360 THNLTVDAH  368 (378)
Q Consensus       360 ~~~~~v~~~  368 (378)
                      +..|.|.+.
T Consensus       172 ~~~l~V~~~  180 (184)
T 2ny1_B          172 KIDIVVLAF  180 (184)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEec
Confidence            667776553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.99  E-value=1.2e-05  Score=71.39  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=52.8

Q ss_pred             ceeEEEEeC--CeeeeeeeeccCCCCCCCCeEEEEe---cccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWG--QSVHLSCFVKLPASMANQPMSWYHY---SKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G--~s~~L~C~~r~~~~La~~~v~W~~~---~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      ...+.+.+|  +++.|.|.+..|.    +.|+|...   +..     +.  .+.++. ....+|+|.+++.+|+|.|.|.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~p~----~~v~w~~~~~~g~~-----~~--~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~   82 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSISN----LNVSLCARYPEKRF-----VP--DGNRISWDSKKGFTIPSYMISYAGMVFCE   82 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSSTT----CCEEEEEETTTEEE-----CC--CSSSCEEETTTEEEEEGGGTTTCSEEEEE
T ss_pred             ceEEEEecCCCccEEEeeccCCCC----cEEEEEhhcCCCcc-----cc--CCCcccccCCccEEEccCChhcCceEEEE
Confidence            367889999  9999999986543    48999774   221     21  223332 3456899999999999999999


Q ss_pred             eCC--eeeEE--Eeeeec
Q psy10772        353 LGN--TVLCT--HNLTVD  366 (378)
Q Consensus       353 ~~~--~~l~~--~~~~v~  366 (378)
                      +.+  ....+  +.|.|.
T Consensus        83 a~n~~~~~~s~~~~l~v~  100 (213)
T 2x1w_L           83 AKINDESYQSIMYIVVVV  100 (213)
T ss_dssp             EC----CEECCCEEEEEC
T ss_pred             EEECCeeEEEEEEEEEEe
Confidence            986  22222  566653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.99  E-value=9.7e-06  Score=70.27  Aligned_cols=82  Identities=13%  Similarity=0.196  Sum_probs=54.6

Q ss_pred             ceeEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEeeccCcceEe--e---------cCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--V---------DGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~---------~~GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|... +.+.   +.++|+.++.+     |......++..  .         ..-|.|.+++..|+
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~~~g~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            9 PGNITGARGLTGTLRCQLQVQGEP---PEVHWLRDGQI-----LELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEEEESSC---CCCEEEETTEE-----CCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             hhheEEecCCcEEEecccccCCCC---cEEEEEECCEE-----cccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            4567889999999999987 4433   57999998754     22100011111  1         23599999999999


Q ss_pred             eEEEEEeCCe---ee-EEEeeeeccc
Q psy10772        347 GKYDCWLGNT---VL-CTHNLTVDAH  368 (378)
Q Consensus       347 G~Y~C~~~~~---~l-~~~~~~v~~~  368 (378)
                      |.|.|.+.+.   .. ....|.|...
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~  106 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGL  106 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCS
T ss_pred             cEEEEEEEeCCCceecccEEEEEecC
Confidence            9999999862   11 2256666544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.99  E-value=1.9e-05  Score=71.86  Aligned_cols=126  Identities=18%  Similarity=0.198  Sum_probs=72.1

Q ss_pred             EEEEEEEeeeecCCCeEEEEEEECCCeeEEEEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCCC
Q psy10772        226 LVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQ  305 (378)
Q Consensus       226 IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~  305 (378)
                      +.+..++..|   .+.|.+................+ .-. .         ...+.+.+.+|+++.|.|...+....+.+
T Consensus        86 L~I~~v~~~D---~G~Y~C~~~~~~~~~~~~~~~~l-~V~-~---------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~  151 (268)
T 3mj6_A           86 LLLQDVQKAD---EGIYTCEIRLKNESMVMKKPVEL-WVL-P---------EEPRDLRVRVGDTTQMRCSIQSTEEKRVT  151 (268)
T ss_dssp             EEECSCCGGG---CEEEEEEEEETTCCCEEEEEEEE-EEE-C---------CCCSEEEEETTCCEEECCBCEESSSSCCC
T ss_pred             EEECCCCHhH---CEEEEEEEEecCCcceEEEEEEE-EEe-c---------cCCCccccccCCcEEEEEEecCCCCCCcc
Confidence            4555555555   57898885433222222221111 110 0         02246788899999999998544444556


Q ss_pred             CeEEEEecccCceeeE--ee---------ccCc----ceE------eecCceEEeeecCCCCeEEEEEeCC---eeeEEE
Q psy10772        306 PMSWYHYSKDKGRYQI--KF---------RSDK----FIR------TVDGGLVIMAVEELDAGKYDCWLGN---TVLCTH  361 (378)
Q Consensus       306 ~v~W~~~~~~~~~~~l--~~---------~~~~----~~~------~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~  361 (378)
                      .++|+.+........+  ..         ..+.    ++.      ....-|.|.+++.+|+|.|.|.+.|   ..-++.
T Consensus       152 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~  231 (268)
T 3mj6_A          152 KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI  231 (268)
T ss_dssp             EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEE
Confidence            8999986432110001  00         0111    111      1234599999999999999999987   445666


Q ss_pred             eeee
Q psy10772        362 NLTV  365 (378)
Q Consensus       362 ~~~v  365 (378)
                      .|.|
T Consensus       232 ~l~V  235 (268)
T 3mj6_A          232 VLHV  235 (268)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6766

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.99  E-value=7.8e-06  Score=75.05  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC---
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+|+++.|.|...+.+.   |.++|++++..     |.  .+.++....  .-|.|.+++.+|+|.|.|.+.|   
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  272 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPE---PAISWFRNGKL-----IE--ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG  272 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSC---CEEEEEETTEE-----CC--CTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTE
T ss_pred             cceecCCCeEEEEEEeecCCC---CeEEEEECCEE-----Cc--CCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCC
Confidence            345678999999999875543   68999998754     33  333433332  2399999999999999999998   


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      ..-++-.|.|.+
T Consensus       273 ~~~~~~~l~v~~  284 (291)
T 2wim_A          273 EDEKQAFLQVFV  284 (291)
T ss_dssp             EEEEEEEEEC--
T ss_pred             ceeeeEEEEEEE
Confidence            556666666654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=97.98  E-value=4.6e-05  Score=67.05  Aligned_cols=87  Identities=22%  Similarity=0.281  Sum_probs=56.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc---------eEeecCceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF---------IRTVDGGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~---------~~~~~~GLlI~~v~~~DsG~Y  349 (378)
                      .....+.+|+++.|.|...+.+.   |.+.|+.+....+. .+......+         ......-|.|.+++..|+|.|
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~---p~v~W~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  200 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQ---PHIQWIKHVEKNGS-KYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY  200 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSC---CEEEEEEECCBTTB-SBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEE
T ss_pred             CCceEEEeCCcEEEEEEEecCCC---CEEEEEECCCCCCc-cccCCCcceEeEecccccccCCccEEEEecCCHHHCeEE
Confidence            34567889999999999865543   58999983221111 121000001         011122399999999999999


Q ss_pred             EEEeCC---eeeEEEeeeecccc
Q psy10772        350 DCWLGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~~~  369 (378)
                      .|.+.|   ..-.+..|.|...+
T Consensus       201 ~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          201 ICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEEeccceEeeEEEEEEecCC
Confidence            999987   45667777776543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=97.98  E-value=1.2e-05  Score=82.62  Aligned_cols=79  Identities=24%  Similarity=0.467  Sum_probs=58.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cC---ceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DG---GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~---GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.|+|+.++.+     |.  .++++.+. ++   -|.|.+++.+|+|.|.|.+.|
T Consensus       392 ~~~~~~~G~~v~l~C~~~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N  461 (570)
T 3b43_A          392 HPVETLKGADVHLECELQGTPP---FQVSWHKDKRE-----LR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN  461 (570)
T ss_dssp             CCEEECTTCCEEEEEEEESSSS---CCCEEEETTEE-----CC--SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CceeecCCCEEEEEEEEecCCC---CEEEEEECCEE-----Cc--CCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEE
Confidence            3456788999999999976544   68999998754     43  33333322 22   388999999999999999988


Q ss_pred             ---eeeEEEeeeeccc
Q psy10772        356 ---TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ---~~l~~~~~~v~~~  368 (378)
                         ...++..|.|...
T Consensus       462 ~~G~~~~~~~l~v~~~  477 (570)
T 3b43_A          462 DVGSDTCVGSITLKAP  477 (570)
T ss_dssp             SSCEEEEEEEEEECCC
T ss_pred             CCCeEEEEEEEEeccC
Confidence               5667778888754

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.97  E-value=1.8e-05  Score=73.68  Aligned_cols=83  Identities=20%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCc----eEEeeecC-CCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGG----LVIMAVEE-LDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~G----LlI~~v~~-~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++..     +.  .+.. +....+|    |.|.+++. .|+|.|.|.
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~---~~i~W~k~g~~-----i~--~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A           13 PKDQIGVSGGVASFVCQATGDPK---PRVTWNKKGKK-----VN--SQRFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSC---CEEEEC--------------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             CCceEecCCCeEEEEEEEEEeCC---CeEEEEECCEE-----CC--CCceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            45678899999999999865433   58999988764     32  2221 2222343    99999998 999999999


Q ss_pred             eCC---eeeEEEeeeecccccC
Q psy10772        353 LGN---TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~~c~  371 (378)
                      +.|   ..-.+..|+|....-.
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~  104 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQL  104 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGC
T ss_pred             EECCCCeEEEEEEEEEeccccC
Confidence            987   4456777877765443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.97  E-value=3.3e-05  Score=68.16  Aligned_cols=68  Identities=22%  Similarity=0.379  Sum_probs=48.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEee----cCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTV----DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~----~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ....+.+|+++.|.|...+.+.   |.++|+.++.+     |... ...++...    ..-|.|.+++.+|+|.|.|.+.
T Consensus       116 ~~~~~~~g~~v~l~C~~~g~p~---p~v~W~~~g~~-----l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  187 (212)
T 2yd6_A          116 QLKVVERTRTATMLCAASGNPD---PEITWFKDFLP-----VDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT  187 (212)
T ss_dssp             CCEEEETTSCEEEEEEEECSSC---CEEEEEETTEE-----C------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEecCCCEEEEEEecCCCC---CeEEEEECCcc-----ccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEE
Confidence            4467788999999999975543   68999998754     3211 11232222    2459999999999999999998


Q ss_pred             C
Q psy10772        355 N  355 (378)
Q Consensus       355 ~  355 (378)
                      |
T Consensus       188 N  188 (212)
T 2yd6_A          188 N  188 (212)
T ss_dssp             E
T ss_pred             C
Confidence            7

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=97.97  E-value=1.4e-05  Score=73.30  Aligned_cols=81  Identities=23%  Similarity=0.468  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--ee--cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TV--DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~--~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ...+.+.+|+++.|.|...+.+.   +.++|+.++.+     +.  .+.++.  ..  ...|.|.+++..|+|.|.|.+.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A           12 PVSVDLALGESGTFKCHVTGTAP---IKITWAKDNRE-----IR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCEEEETTCCEEEEEEEESSSC---CEEEEEETTEE-----CC--SSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceEecCCCcEEEEEEEEcCCC---CEEEEEECCEE-----Cc--CCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            34567889999999999875433   58999988754     32  222221  11  2359999999999999999997


Q ss_pred             C---eeeEEEeeeecccc
Q psy10772        355 N---TVLCTHNLTVDAHS  369 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~  369 (378)
                      +   ..-++..|.|...+
T Consensus        82 n~~g~~~~~~~l~V~~~p   99 (284)
T 2rik_A           82 NVAGKDSCSAQLGVQEPP   99 (284)
T ss_dssp             ETTEEEEEEEEEEEECCC
T ss_pred             ECCceEEEEEEEEccCCC
Confidence            6   45567777776543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.96  E-value=2e-05  Score=71.92  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeecCc------eEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVDGG------LVIM  339 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~~G------LlI~  339 (378)
                      ..+.+++.+|+++.|.|..... .++.+.|.|+.+...+....+.. .           ..+|+....++      |.|.
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   90 (256)
T 3juy_B           12 QSGAEVKKPGASVKVSCQASGY-RFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   90 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCceecCCCeEEEEEEeecc-cccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEEC
Confidence            3567889999999999998652 22335899987643222111110 0           12355544222      9999


Q ss_pred             eecCCCCeEEEEEeCCe
Q psy10772        340 AVEELDAGKYDCWLGNT  356 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~~  356 (378)
                      +|+.+|+|.|.|.+.+.
T Consensus        91 ~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           91 SLRSADTAVYYCARVGE  107 (256)
T ss_dssp             SCCGGGCEEEEEEECCC
T ss_pred             CCCcccCEEEEEeEEec
Confidence            99999999999999875

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.96  E-value=2.8e-05  Score=69.77  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC-CCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS-MANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~-La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|.....+. ...+.|.|+.+........+..       ..+.|+.....    -|.|.+|+.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            34578899999999999876541 0125799998743211111110       01234443322    399999999999


Q ss_pred             eEEEEEeCCe----eeEEEeeeeccc
Q psy10772        347 GKYDCWLGNT----VLCTHNLTVDAH  368 (378)
Q Consensus       347 G~Y~C~~~~~----~l~~~~~~v~~~  368 (378)
                      |.|.|.+.+.    .-....|+|...
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             EEEEEEEccCCceeecCCEEEEEecC
Confidence            9999999884    223456777654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.96  E-value=2.8e-05  Score=68.38  Aligned_cols=87  Identities=21%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec-C---ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD-G---GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~-~---GLlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|...+.+....+.|.|+.+........+..       ...+|+.... .   .|.|.+++.+|+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   87 (212)
T 1q0x_L            8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAI   87 (212)
T ss_dssp             SEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEE
Confidence            45778899999999998654321024799998753211100100       0123443322 2   49999999999999


Q ss_pred             EEEEeCCeee----EEEeeeec
Q psy10772        349 YDCWLGNTVL----CTHNLTVD  366 (378)
Q Consensus       349 Y~C~~~~~~l----~~~~~~v~  366 (378)
                      |.|.+.+..-    ....|+|.
T Consensus        88 Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           88 YFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             EEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEecCchhhcCCCeEEEEe
Confidence            9999987432    22356664

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=97.95  E-value=2.7e-05  Score=63.60  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cC---ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DG---GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~---GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+|+++.|.|.......-..+.+.|+.+...++...|-.       ...+|+... ..   -|.|.+++.+|+|.|
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~Y   88 (120)
T 1oaq_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (120)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             cEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeEE
Confidence            3788999999999998644210124689998754322211210       012344332 12   399999999999999


Q ss_pred             EEEeCCeee----EEEeeeecccccCCC
Q psy10772        350 DCWLGNTVL----CTHNLTVDAHSNVAD  373 (378)
Q Consensus       350 ~C~~~~~~l----~~~~~~v~~~~c~~~  373 (378)
                      .|...+..-    ..-.|+|....-..|
T Consensus        89 ~C~~~~~~~~~fg~gt~L~V~~~~~~~p  116 (120)
T 1oaq_L           89 FCALWYSNHLVFGGGTKLTVLGQPKSSP  116 (120)
T ss_dssp             EEEEEETTEEEECCCEEEEECC------
T ss_pred             EEEEccCCCcEECCCEEEEEcCCCCCCC
Confidence            999875211    123777766554444

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.94  E-value=3.7e-05  Score=66.67  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC-CCCeEEEEecccC-----------ceeeEe---eccCcceEee-------cCce
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA-NQPMSWYHYSKDK-----------GRYQIK---FRSDKFIRTV-------DGGL  336 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La-~~~v~W~~~~~~~-----------~~~~l~---~~~~~~~~~~-------~~GL  336 (378)
                      .+.+.+.+|+++.|.|....++... .+.|+|++++...           +...+.   .....|+...       ..-|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            4678899999999999987654321 3579999864321           000010   0012333332       2349


Q ss_pred             EEeeecCCCCeEEEEEeCC---eeeEEEeeeeccc
Q psy10772        337 VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       337 lI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                      .|.+++.+|+|.|.|.+.+   ..-....|.|...
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~  121 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK  121 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC
Confidence            9999999999999999976   3566677777654

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.94  E-value=2.3e-05  Score=63.13  Aligned_cols=74  Identities=16%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cC---ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DG---GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~---GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+...++...|-.       ...+|+... ..   -|.|.+|+.+|+|
T Consensus        11 p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   87 (111)
T 1i3g_L           11 HKFMSTSVGDRVSITCKASQDV---GTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLA   87 (111)
T ss_dssp             CSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCEEEEcCCCCEEEEEEeCCCC---CCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCE
Confidence            3467888999999999986443   24799998864322211211       012344432 11   3999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus        88 ~Y~C~~~~   95 (111)
T 1i3g_L           88 DYFCQQYS   95 (111)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            99999986

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.94  E-value=2.3e-05  Score=63.54  Aligned_cols=75  Identities=21%  Similarity=0.319  Sum_probs=50.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee------cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV------DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~------~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|.....+ .+.+.|.|+.+........+ +..+.|+...      .--|.|.+++.+|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~~-~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   84 (113)
T 1sq2_N            7 PRSVTKETGESLTINCVLRDAS-YALGSTCWYRKKSGEGNEES-ISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCG   84 (113)
T ss_dssp             CSEEEECTTCCEEEEEEECSCS-SCCCCEEEEEEETTSCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CccEEEecCCCEEEEEEECCCc-CCCCEEEEEEeCCCCCceEe-EEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence            3457888999999999986443 22357999988532221111 1223444332      11399999999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +.+
T Consensus        85 ~~~   87 (113)
T 1sq2_N           85 LGV   87 (113)
T ss_dssp             ECB
T ss_pred             EEe
Confidence            875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.93  E-value=2.7e-05  Score=69.09  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eeccCc-c---eEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRSDK-F---IRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~~~-~---~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+|+++.|.|...+.+.. .+.++|+.++.+..+... ....+. +   ......-|.|.+++.+|+|.|.|.+.
T Consensus       113 ~~~~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  191 (213)
T 2x1w_L          113 HGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS  191 (213)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTB-CCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCCEEEEEEEECCCCC-ceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEe
Confidence            34588999999999999753321 136899888765221000 000000 0   01112349999999999999999998


Q ss_pred             C---eeeEEEeeeeccc
Q psy10772        355 N---TVLCTHNLTVDAH  368 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~  368 (378)
                      |   ..-++..|+|.+.
T Consensus       192 N~~g~~~~~~~l~V~~~  208 (213)
T 2x1w_L          192 SGLMTKKNSTFVRVHED  208 (213)
T ss_dssp             CSSCEEEEEEEEEEEC-
T ss_pred             cCCCcEEEEEEEEEecc
Confidence            8   5577778888654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.93  E-value=1.5e-05  Score=69.76  Aligned_cols=59  Identities=15%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCeee
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVL  358 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~l  358 (378)
                      +.+|+++.|.|..  |    .|.|+|+.++.+     |.  ....   ...-|.|.+++.+|+|.|.|.+.|..-
T Consensus       119 ~~~G~~v~l~C~~--p----~p~i~W~k~g~~-----i~--~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g  177 (186)
T 1jbj_A          119 SRGDGSVLLTCGL--T----DKTIKWLKDGSI-----IS--PLNA---TKNTWNLGNNAKDPRGTYQCQGAKETS  177 (186)
T ss_dssp             CSSSCEEEEECSS--S----CSCEEEEETTEE-----CC--CSSC---CSSCCEEEETTSCCEEEEEEEESSCEE
T ss_pred             cCCCCeEEEEeeC--C----CCeEEEEECCEE-----Cc--ccCC---CcceEEECCCCcCcCEEEEEEEEcCcC
Confidence            3489999999987  3    358999998764     42  2221   456699999999999999999998443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.93  E-value=7.2e-06  Score=70.92  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             EEEEe-CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--eee
Q psy10772        282 QTVTW-GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--TVL  358 (378)
Q Consensus       282 ~~~~~-G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--~~l  358 (378)
                      +.+.+ |+++.|.|...+.+. +.+.++|+.++.+     +.  .+. ....+..|.|.+++..|+|.|.|.+.+  ...
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~-~~~~v~W~~~~~~-----~~--~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~   82 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSH-TLMYSYWTKNGVE-----LT--ATR-KNASNMEYRINKPRAEDSGEYHCVYHFVSAPK   82 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSS-CEEEEEEEETTEE-----CT--TCC-BCCSEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEccCCceEEEEEEeccCCC-CceEEEEEECCEE-----Cc--ccc-eEeccEEEEEecCCcccCEEEEEEEEeCCccc
Confidence            45556 999999999875443 2247899988654     32  222 223455699999999999999999975  455


Q ss_pred             EEEeeeecc
Q psy10772        359 CTHNLTVDA  367 (378)
Q Consensus       359 ~~~~~~v~~  367 (378)
                      .+..|.|..
T Consensus        83 ~~~~l~V~~   91 (190)
T 2wv3_A           83 ANATIEVKA   91 (190)
T ss_dssp             EEEEEEEEC
T ss_pred             ccEEEEEec
Confidence            666676654

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.93  E-value=3.2e-05  Score=62.56  Aligned_cols=73  Identities=19%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-----------cCcceEeecC---ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-----------SDKFIRTVDG---GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-----------~~~~~~~~~~---GLlI~~v~~~D  345 (378)
                      +.+.+.+|+++.|.|.....+   .+.|.|+.+....+...|-..           .++|+.....   -|.|.+++.+|
T Consensus         9 ~~~~v~~G~~vtL~C~~~~~~---~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L~I~~~~~~D   85 (112)
T 1fo0_B            9 RWRLVPRGQAVNLRCILKNSQ---YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ   85 (112)
T ss_dssp             SEEECCTTCCEEEEEEESCTT---CCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCS
T ss_pred             CeEEEecCCcEEEEEEeCCCC---CceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeEEEcCCCHhH
Confidence            457788999999999985322   247999987543222112100           0144443211   59999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|...+
T Consensus        86 sg~Y~C~~~~   95 (112)
T 1fo0_B           86 GRTLYCTCSA   95 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEEEEc
Confidence            9999999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=97.92  E-value=1.5e-05  Score=73.83  Aligned_cols=79  Identities=10%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      +..+.+.+|+++.|.|...  ...+.|.++|+.++.+     |.  .+.++.....    -|.|.+++.+|+|.|.|.+.
T Consensus         8 ~~~~~v~eg~~v~l~~~~~--~~~p~~~v~W~k~~~~-----i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~   78 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECD--KMTPKSEFSWSKDYVS-----TE--DSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT   78 (312)
T ss_dssp             CCEEEECTTCCEEEEEECS--SCCTTCCEEEEETTEE-----CT--TCTTEEEEEETTEEEEEESSCCGGGCEEEEEEES
T ss_pred             ceeEEEecCCeEEEEEEEe--CCCCCcEEEEEECCEE-----CC--CCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEE
Confidence            4567788999999998875  2234468999998754     32  3445444443    49999999999999999999


Q ss_pred             C--eeeEEEeeeec
Q psy10772        355 N--TVLCTHNLTVD  366 (378)
Q Consensus       355 ~--~~l~~~~~~v~  366 (378)
                      +  ..-.++.|.|.
T Consensus        79 n~~g~~~s~~l~v~   92 (312)
T 2y23_A           79 DTDGIASSYLIDEE   92 (312)
T ss_dssp             SSCCCCEEEEECHH
T ss_pred             eCCCcEEEEEEEEe
Confidence            7  22235666654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.92  E-value=2.8e-06  Score=79.36  Aligned_cols=80  Identities=14%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CcccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEE
Q psy10772        271 SICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       271 ~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~  350 (378)
                      ..|.....+..+.+.+|+++.|.|...+.+.  .+.++|+.++.+..   +....+.++...+..|.|.+++.+|+|.|.
T Consensus         4 ~~c~~~~~~~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   78 (315)
T 1itb_B            4 DKCKEREEKIILVSSANEIDVRPCPLNPNEH--KGTITWYKDDSKTP---VSTEQASRIHQHKEKLWFVPAKVEDSGHYY   78 (315)
T ss_dssp             --CCCBCCCCCCEEETTSCCCCBCCCCSCCC--SSCCCEECTTSCSC---SCCCTTSSSEECSSBEECTTCCGGGCSCCE
T ss_pred             ccchhhcCceEEEEcCCCcEEEEeeccCcCC--CceEEEEeCCCcCc---cccccCCcEeccCCeEEECCCChhhCEEEE
Confidence            4577555566788999999999999865542  24899998875311   222245566666778999999999999999


Q ss_pred             EEeCC
Q psy10772        351 CWLGN  355 (378)
Q Consensus       351 C~~~~  355 (378)
                      |.+.|
T Consensus        79 C~a~n   83 (315)
T 1itb_B           79 CVVRN   83 (315)
T ss_dssp             ECCCS
T ss_pred             EEEeC
Confidence            99987

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.92  E-value=2.1e-05  Score=72.32  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---eccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---FRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ...+.+|+++.|.|...+.+.   |.++|++++...++. +.   ............-|.|.+++.+|+|.|.|.+.|  
T Consensus       190 ~~~v~~G~~v~L~C~~~g~p~---p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  265 (289)
T 3mjg_X          190 QTVVRQGENITLMCIVIGNEV---VNFEWTYPRKESGRL-VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESV  265 (289)
T ss_dssp             CSEEETTSCEEEEEEEESCSS---BEEEEECTTSSSSCC-CCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETT
T ss_pred             cceeEcCCCEEEEEEECCCCC---cceEEEcCCccCCCc-ccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCC
Confidence            356889999999999976543   589999876542210 10   000000011234599999999999999999988  


Q ss_pred             -eeeEEEeeeecccc
Q psy10772        356 -TVLCTHNLTVDAHS  369 (378)
Q Consensus       356 -~~l~~~~~~v~~~~  369 (378)
                       ..-++-.|+|...+
T Consensus       266 G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          266 NDHQDEKAINITVVE  280 (289)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCceeEEEEEEEEEe
Confidence             56666677666543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.92  E-value=1.5e-05  Score=71.47  Aligned_cols=74  Identities=26%  Similarity=0.262  Sum_probs=49.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCce-----eeEe----------ecc--CcceEe-ecCceEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR-----YQIK----------FRS--DKFIRT-VDGGLVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~-----~~l~----------~~~--~~~~~~-~~~GLlI~~  340 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++.+-..     ++..          ..+  ..+... ...-|.|.+
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g~p~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  219 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTDCAN---ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRA  219 (250)
T ss_dssp             CSEEECCTTCCEEECCCEESCTT---CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECS
T ss_pred             CceEEecCCCcEEEEEEecCCCC---CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEec
Confidence            34567778999999999976433   58999998754110     0000          000  011111 225699999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      ++.+|+|.|.|.+.|
T Consensus       220 v~~~D~G~Y~C~a~N  234 (250)
T 2fbo_J          220 AKITDAGRVWCELAT  234 (250)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             CCcccCEEEEEEecC
Confidence            999999999999998

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.92  E-value=1.7e-05  Score=68.79  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-----eEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-----QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-----~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      ....+.+.+|+++.|.|...+.+.   +.++|+.++.....+     .+......++......|.|.+++..|+|.|.|.
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~   86 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAYSGFSS---PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM   86 (209)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSS---EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEE
T ss_pred             CCCceEEEcCCCEEEEEEEeCCCC---cEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEE
Confidence            345677889999999999875433   589999987541000     011112445666667799999999999999999


Q ss_pred             eCC-----eeeEEEeeeecccc
Q psy10772        353 LGN-----TVLCTHNLTVDAHS  369 (378)
Q Consensus       353 ~~~-----~~l~~~~~~v~~~~  369 (378)
                      +.+     ..-....|.|...+
T Consensus        87 ~~~~~g~~~~~~~~~l~V~~~p  108 (209)
T 1nbq_A           87 VSEEGGNSYGEVKVKLIVLVPP  108 (209)
T ss_dssp             EEETTSSCEECCEEECCEEBCC
T ss_pred             EecCCCCccceEEEEEEEecCC
Confidence            875     23345666665443

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.92  E-value=3.1e-05  Score=62.58  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC---CCCCCeEEEEecccCceeeEee-------ccCcceEeec-C---ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS---MANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD-G---GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~---La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~-~---GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|.....+.   ...+.|.|+.+....+...|-.       ...+|+.... .   -|.|.+++.+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   87 (114)
T 1eeq_A            8 PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAE   87 (114)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcc
Confidence            34678899999999999864431   0124799998753322211210       0123444322 1   3999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|.+.+
T Consensus        88 DsG~Y~C~~~~   98 (114)
T 1eeq_A           88 DVAVYYCQQYY   98 (114)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEEEEEee
Confidence            99999999986

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.92  E-value=3.3e-05  Score=67.10  Aligned_cols=85  Identities=13%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEee--ccCcceEe--ecCceEEeeecCCCCeEEEEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKF--RSDKFIRT--VDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~--~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      +.+.+.+|+++.|.|... +   +.+.|.|++++..-..+   ....  +..+|+..  ....|.|.+++..|+|.|.|.
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~---~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~   78 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-V---PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME   78 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-S---CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             cEEEEEcCCCEEEcCCCC-C---CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEE
Confidence            467899999999999873 2   33589999875420000   0100  01224333  234599999999999999999


Q ss_pred             eCCe-eeEEEeeeeccc
Q psy10772        353 LGNT-VLCTHNLTVDAH  368 (378)
Q Consensus       353 ~~~~-~l~~~~~~v~~~  368 (378)
                      +.+. ....+.|.|.+.
T Consensus        79 ~~n~~~~~~~~L~V~~~   95 (171)
T 1ccz_A           79 SPNITDTMKFFLYVLEM   95 (171)
T ss_dssp             CTTCCSCEEEEEEEECC
T ss_pred             EeCCCCcEEEEEEEECc
Confidence            9762 256677777653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=97.92  E-value=1.5e-05  Score=73.77  Aligned_cols=82  Identities=26%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecC---ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDG---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|+|+.++.+     +.. .+.++..  ..+   -|.|.+++..|+|.|.|.+
T Consensus        11 p~~~~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~~-----~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A           11 LRNLNVRYQSNATLVCKVTGHPK---PIVKWYRQGKE-----IIA-DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSC---CEEEEEETTEE-----CCC-CSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             ccceEEeCCCcEEEEEEEeCCCC---CeEEEEECCEE-----ccc-CCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            35678899999999999865543   58999998754     321 1222222  233   3999999999999999999


Q ss_pred             CC---eeeEEEeeeecccc
Q psy10772        354 GN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~~~  369 (378)
                      .|   ..-.+..|.|....
T Consensus        82 ~n~~g~~~~~~~l~V~~~p  100 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPA  100 (305)
T ss_dssp             EETTEEEEEEEEEEECEEE
T ss_pred             EcCCCCccceEEEEEecCC
Confidence            76   44556667776443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.91  E-value=1.4e-05  Score=75.70  Aligned_cols=125  Identities=16%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             EEEEEEEeeeecCCC-eEEEEEEECCCeeEEEEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCC
Q psy10772        226 LVVDVVQYEVFGTTS-EYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMAN  304 (378)
Q Consensus       226 IaVd~v~~~~~~~~~-~ytV~flGT~~G~v~~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~  304 (378)
                      +.+..++..|   .+ .|++. +....|......   ...+-... ..+..  ....+.+.+|+++.|.|...+.+.  .
T Consensus        91 L~i~~v~~~D---~Gs~Y~C~-a~n~~g~~~~~~---~~~v~~~~-p~~~~--~~~~~~~~~G~~v~L~C~~~g~p~--~  158 (329)
T 3oq3_B           91 LWIANYTSND---SHRRYLCT-VTTKNGDCVQGI---VRSHIRKP-PSCIP--ETYELGTHDKYGIDLYCGILYAKH--Y  158 (329)
T ss_dssp             EEESSCCGGG---GGCCEEEE-EECTTSCEEEEE---EEEEECCC-CSCEE--EEEETTSSTTTCEEEECCCCSCCC--C
T ss_pred             EEEcCCChHh---CCCcEEEE-EEeCCCceeeEE---EEEEEcCC-CcEec--cccceEEeCCCcEEEEeccCCCCC--C
Confidence            4444454444   57 79997 455565432211   11111111 22221  111223567999999998866541  3


Q ss_pred             CCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe-----eeEE----Eeeeeccc
Q psy10772        305 QPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT-----VLCT----HNLTVDAH  368 (378)
Q Consensus       305 ~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~-----~l~~----~~~~v~~~  368 (378)
                      |.++|+.++.+     +. ..+.++......|.|.+++.+|+|.|.|.+.|.     ....    ..|+|...
T Consensus       159 ~~i~W~k~~~~-----l~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~  225 (329)
T 3oq3_B          159 NNITWYKNNQE-----LI-IDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS  225 (329)
T ss_dssp             CEEEEEETTEE-----CC-CSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECC
T ss_pred             ceEEEEECCcc-----CC-CCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECC
Confidence            68999988754     32 123455555778999999999999999999853     3233    66777643

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.91  E-value=4.6e-05  Score=67.77  Aligned_cols=86  Identities=14%  Similarity=0.218  Sum_probs=55.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-c---CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-D---GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~---~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+........+..       ..++|+... .   ..|.|.+|+.+|+|
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  107 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFA  107 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCe
Confidence            3467899999999999986553   35899988643222111110       112343332 1   23999999999999


Q ss_pred             EEEEEeCCee----eEEEeeeecc
Q psy10772        348 KYDCWLGNTV----LCTHNLTVDA  367 (378)
Q Consensus       348 ~Y~C~~~~~~----l~~~~~~v~~  367 (378)
                      .|.|.+.+..    -....|.|..
T Consensus       108 ~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          108 TYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEEC
T ss_pred             EEEEeeccCCceEEcCcEEEEEec
Confidence            9999997622    2334666644

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.91  E-value=3.8e-05  Score=61.94  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=49.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCC--CCCCCeEEEEecccCceeeEee-------ccCcceEeec-C---ceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPAS--MANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD-G---GLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~-~---GLlI~~v~~~Ds  346 (378)
                      +.+.+.+|+++.|+|.......  ...+.|.|+.+...++...|-.       ...+|+.... .   -|.|.+|+.+|+
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   88 (113)
T 1dlf_L            9 LSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   88 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHC
Confidence            4578899999999999864431  0124799998754322211211       0123444321 2   399999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|...+
T Consensus        89 G~Y~C~~~~   97 (113)
T 1dlf_L           89 GVYFCSQST   97 (113)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEec
Confidence            999999986

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.91  E-value=2.6e-05  Score=69.52  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC-------ceeeEee----ccCcceEeec-------CceEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-------GRYQIKF----RSDKFIRTVD-------GGLVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~-------~~~~l~~----~~~~~~~~~~-------~GLlI~~  340 (378)
                      .+.+.+.+|+++.|+|....++......|+|+.++...       ++. +..    .-..|+....       .-|.|.+
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~-~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKE-VEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEE-CGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeE-cccccCccccceEEEecccccCCeEEEEEee
Confidence            45678999999999998865444333368998765431       110 000    0011222111       1399999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      |+.+|+|.|.|.+.|
T Consensus        90 v~~~D~G~Y~C~a~n  104 (226)
T 4f80_A           90 VTASDSGKYLCYFQD  104 (226)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CchHHCeeEEEEEEC
Confidence            999999999999987

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.91  E-value=4.7e-05  Score=66.84  Aligned_cols=84  Identities=17%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee-cC---ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV-DG---GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~-~~---GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+|+++.|.|...+.+   .+.|.|+.+........+...       ..+|+... ..   -|.|.+|+.+|+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADY   85 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEE
Confidence            67899999999999986333   358999885432221111100       12233321 22   299999999999999


Q ss_pred             EEEeCCee------eEEEeeeecc
Q psy10772        350 DCWLGNTV------LCTHNLTVDA  367 (378)
Q Consensus       350 ~C~~~~~~------l~~~~~~v~~  367 (378)
                      .|.+.+..      -....|.|..
T Consensus        86 ~C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           86 YCQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             EEEEEETTTTEEEEBCCEEEEEEC
T ss_pred             EEEeccCCcceeEEcCceEEEEeC
Confidence            99997622      2345666654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.90  E-value=1.2e-05  Score=75.87  Aligned_cols=95  Identities=17%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             Cccccc-ccceeEEEEeCCeeeeeeeeccCC----CCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCC
Q psy10772        271 SICESS-VGRLKQTVTWGQSVHLSCFVKLPA----SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELD  345 (378)
Q Consensus       271 ~~C~~~-~~~k~~~~~~G~s~~L~C~~r~~~----~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~D  345 (378)
                      ..|+.- ...+.+.+.+|+++.|.|......    ..+.+.|+|+.++.+..   +....+.++...+..|.|.+++..|
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~D   92 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART---VPGEEETRMWAQDGALWLLPALQED   92 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSC---CSCCSSSCEEEETTEEEESSBCTTC
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcc---cCccccccEEeeCCeEEECCCCccc
Confidence            445532 235678999999999999985111    23346899999875410   2111234566667779999999999


Q ss_pred             CeEEEEEeCC---eeeEEEeeeeccc
Q psy10772        346 AGKYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       346 sG~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                      +|.|.|.+.+   ..-.+..|.|...
T Consensus        93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           93 SGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             CEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             CEEEEEEEECCcceEEEEEEEEEEcC
Confidence            9999999987   3556667777654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.90  E-value=1.5e-05  Score=76.57  Aligned_cols=123  Identities=14%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..+...|   .+.|++. +-...|....- ...+...     |..-   .....+.+.+|+++.|.|...+.+.  
T Consensus       276 ~L~i~~~~~~d---~G~Y~C~-a~n~~g~~~~~~~l~V~~~-----p~~~---~~~~~~~v~~g~~~~l~C~~~g~p~--  341 (404)
T 3p3y_A          276 ALRITNVSEED---SGEYFCL-ASNKMGSIRHTISVRVKAA-----PYWL---DEPKNLILAPGEDGRLVCRANGNPK--  341 (404)
T ss_dssp             EEEESSCCGGG---CEEEEEE-EECSSCEEEEEEEEEEEEE-----EEEE---ECCCCEEECTTCCEEEECEEEEESC--
T ss_pred             eEEEccCCHhH---CEEEEEE-EEeCCCcEEEEEEEEEeCC-----Ceee---ccCCcceeecCCcEEEEEEccccCC--
Confidence            35555555444   5788887 34445554321 1111111     0100   1234467888999999999876543  


Q ss_pred             CCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        304 NQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                       |.++|++++.+     |... ...+....+.-|.|.+++.+|+|.|.|.+.|   ...++..|.|.+
T Consensus       342 -p~v~W~~~g~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          342 -PTVQWMVNGEP-----LQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             -CEEEEEETTEE-----GGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             -CceEEEECCEe-----cCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence             58999998754     3211 1123444555699999999999999999987   566777777754

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.90  E-value=3.3e-05  Score=61.71  Aligned_cols=87  Identities=20%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC-cee-----eEee--ccCcceEee--cCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-GRY-----QIKF--RSDKFIRTV--DGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~-~~~-----~l~~--~~~~~~~~~--~~GLlI~~v~~~DsG~  348 (378)
                      ...+.+.+|+++.|+|....+..  .+.|.|+...... ..+     ....  .-.+|+...  ...|.|.+|+.+|+|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~   87 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGP--YRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGT   87 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCS--CSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCCEEEecCCcEEEeCCccCCCC--cCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeE
Confidence            45678999999999998732222  2479998832110 000     0000  011354442  3349999999999999


Q ss_pred             EEEEeCCee--eEEEeeeecc
Q psy10772        349 YDCWLGNTV--LCTHNLTVDA  367 (378)
Q Consensus       349 Y~C~~~~~~--l~~~~~~v~~  367 (378)
                      |.|...+..  -....|+|.+
T Consensus        88 Y~C~v~~~~~~~~~~~L~V~d  108 (110)
T 2ptt_A           88 YYMRVLRETENELKITLEVFD  108 (110)
T ss_dssp             EEEEEESSSBCCEEEEEEEEC
T ss_pred             EEEEEEcCCCcEEEEEEEEEc
Confidence            999997632  3356666653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.89  E-value=3e-05  Score=68.08  Aligned_cols=84  Identities=15%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|...+.+   .+.|.|+.+........+...       .++|+.....    .|.|.+++.+|+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIG   84 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCEEEecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCE
Confidence            3467889999999999987653   368999876432221111110       1234333222    4999999999999


Q ss_pred             EEEEEeCCee----eEEEeeee
Q psy10772        348 KYDCWLGNTV----LCTHNLTV  365 (378)
Q Consensus       348 ~Y~C~~~~~~----l~~~~~~v  365 (378)
                      .|.|.+.+..    -....|+|
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           85 SYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEecccCCceEEcCCceEEE
Confidence            9999997631    23345666

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.89  E-value=1.1e-05  Score=70.50  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=47.2

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--ceEEeeecCCCCeEEEEEeCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+|+++.|.|....++    |.++|+.++.+     +.  .+.++.....  -|.|.+++..|+|.|.|.+.|
T Consensus       122 ~~~g~~v~l~C~~~~~p----p~i~W~~~g~~-----l~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  184 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG----ANIQWLFNSQS-----LQ--LTERMTLSQNNSILRIDPIKREDAGEYQCEISN  184 (208)
T ss_dssp             CCTTCCEEEEEECSCTT----CEEEEEETTEE-----CC--CCSSEEEETTTTEEEESSCCGGGCEEEEEEEEC
T ss_pred             EeeCCCEEEEEECCCCC----CceEEEECCEe-----CC--CCCCeEEcCCCCEEEEeccCHHhCeEEEEEEec
Confidence            67799999999986543    47999997754     33  3444444443  399999999999999999998

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.89  E-value=3.5e-05  Score=67.76  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=54.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|.|+.+........+..       ....|+.....    .|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVT---SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccC---CCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCe
Confidence            35678899999999999865543   5799998643211100100       01234333222    5999999999999


Q ss_pred             EEEEEeCCeeeE----EEeeeecc
Q psy10772        348 KYDCWLGNTVLC----THNLTVDA  367 (378)
Q Consensus       348 ~Y~C~~~~~~l~----~~~~~v~~  367 (378)
                      .|.|.+.+..-.    ...|+|..
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEEcCCCceeCCCEEEEEcC
Confidence            999999874311    23566654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.89  E-value=4e-05  Score=69.27  Aligned_cols=90  Identities=21%  Similarity=0.332  Sum_probs=55.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC--CCCCeEEEEecccCceeeEeec-------cCcceEeec-C---ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM--ANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD-G---GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L--a~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~-~---GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|.....+..  ..+.|.|+.+........+...       .+.|+.... .   -|.|.+|+.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            356789999999999998654310  0257999986532221111100       123444322 2   39999999999


Q ss_pred             CeEEEEEeCCee----eEEEeeeeccc
Q psy10772        346 AGKYDCWLGNTV----LCTHNLTVDAH  368 (378)
Q Consensus       346 sG~Y~C~~~~~~----l~~~~~~v~~~  368 (378)
                      +|.|.|.+.+..    -....|+|...
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CEEEEEEEccCCccEECCCEEEEEECC
Confidence            999999998742    12345666553

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.88  E-value=2.9e-05  Score=68.20  Aligned_cols=75  Identities=25%  Similarity=0.311  Sum_probs=50.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-----e--ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-----F--RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-----~--~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      ...+.+.+|+++.|.|...+.+.   +.|+|+.+........+.     .  ...+|+.....    -|.|.+++.+|+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIG---NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CccEEEeCCCcEEEEEECCCCCC---CCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            35678899999999999875543   579999865322110010     0  01134333222    4999999999999


Q ss_pred             EEEEEeCCe
Q psy10772        348 KYDCWLGNT  356 (378)
Q Consensus       348 ~Y~C~~~~~  356 (378)
                      .|.|.+.+.
T Consensus        85 ~Y~C~~~~~   93 (213)
T 3d9a_L           85 MYFCQQSNS   93 (213)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEeeecC
Confidence            999999874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.88  E-value=1.4e-05  Score=76.95  Aligned_cols=78  Identities=17%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|++++..     +.  .+.++.. .+.-|.|.+++.+|+|.|.|.+.|   
T Consensus       320 ~~~~~~~g~~v~l~C~~~g~p~---p~v~W~~~g~~-----~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  389 (403)
T 3laf_A          320 SNLYAYESMDIEFECAVSGKPV---PTVNWMKNGDV-----VI--PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAG  389 (403)
T ss_dssp             CCEECCTTCCEEECCEEEEESC---CEEEEEETTEE-----CC--CSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cceEEecCCeEEEEEEEeeccC---CEEEEEECCEE-----CC--CCCcEEEecCccEEEeccccccCEEEEEEEEcCCc
Confidence            3456778999999999875544   58999998754     32  3343333 344599999999999999999987   


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      ..-++-.|.|.+
T Consensus       390 ~~~~~~~l~V~~  401 (403)
T 3laf_A          390 NAQSSAQLIVPK  401 (403)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEEEEeC
Confidence            666777777764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.88  E-value=2.1e-05  Score=78.31  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ...+.+.+|+++.|+|.+.+++.   +.++|++++..... ......+.+..   ..|.|.+|+.+|+|.|.|.+.|   
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~---p~i~W~~~~~~l~~-~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~g  127 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGN---ISCLWVFKHSSLNC-QPHFDLQNRGV---VSMVILKMTETQAGEYLLFIQSEAT  127 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSS---CEEEEEETTEEECC-CCBC-----CE---EEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             cccEEEecCCcEEEEEEEEcCCC---CeEEEEECCCccCc-cceeccccceE---EEEEEeecCcccCEEEEEEEEcCCC
Confidence            34788999999999999876544   67899987643000 00000111211   2489999999999999999988   


Q ss_pred             eeeEEEeeeec
Q psy10772        356 TVLCTHNLTVD  366 (378)
Q Consensus       356 ~~l~~~~~~v~  366 (378)
                      ..-....|.|.
T Consensus       128 ~~~~~~~l~V~  138 (423)
T 3qs7_E          128 NYTILFTVSIR  138 (423)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cEEEEEEEEEe
Confidence            44456666665

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.88  E-value=3e-05  Score=64.85  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee------cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV------DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~------~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...... .+.+.+.|+.+...+....+ ...++|+...      .--|.|.+++.+|+|.|.|.
T Consensus         7 p~~v~v~~G~svtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l-i~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~   84 (126)
T 3moq_A            7 PRTATKETGESLTINCVLRDAS-FELKDTGWYRTKLGSTNEQS-ISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (126)
T ss_dssp             CSEEEEETTCCEEEEEEEESCS-SCCCEEEEEEEETTCCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CceEEEeCCCCEEEEEEeecCc-cCCceEEEEEeCCCCCceEE-EEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEE
Confidence            3567889999999999986442 23346999987543221112 1233444332      11399999999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      ..+
T Consensus        85 ~~~   87 (126)
T 3moq_A           85 AFY   87 (126)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.87  E-value=2e-05  Score=63.10  Aligned_cols=75  Identities=20%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee------cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV------DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~------~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...... .+.+.|.|+.+........+ +..++|+...      .--|.|.+++.+|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   84 (108)
T 2coq_A            7 PRIATKETGESLTINCVLRDTA-CALDSTNWYRTKLGSTKEQT-ISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCK   84 (108)
T ss_dssp             CSEEEECTTCCEEEEEEECCSS-EEEEEEEEEEEETTCCCEEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CceEEEcCCCCEEEEeEeCCCc-CCCCEEEEEEcCCCCCcEEE-EEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEE
Confidence            3457888999999999986432 12247999988532221112 1233444321      12399999999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +.+
T Consensus        85 ~~~   87 (108)
T 2coq_A           85 AYR   87 (108)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=97.87  E-value=5.3e-05  Score=60.33  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCC--CCCeEEEEeccc------Cceee---EeeccCcceEee--cCceEEeeecCCCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMA--NQPMSWYHYSKD------KGRYQ---IKFRSDKFIRTV--DGGLVIMAVEELDAG  347 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La--~~~v~W~~~~~~------~~~~~---l~~~~~~~~~~~--~~GLlI~~v~~~DsG  347 (378)
                      .+.+..|+++.|+|.....+...  ...|.|+.++.+      .+...   ...+-..|+...  +.-|.|.+|+.+|+|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCE
Confidence            56788999999999875332211  013899876432      01000   000011233322  234999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|...+
T Consensus        83 ~Y~C~v~~   90 (110)
T 1ncn_A           83 LYQCIIHH   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            99999876

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.87  E-value=8.2e-06  Score=72.82  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeee-cCCCCeEEEEEeCC
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAV-EELDAGKYDCWLGN  355 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v-~~~DsG~Y~C~~~~  355 (378)
                      ++|+++.|.|..  .+   .|.++|++++..     |....+.+.+ .....|.|.+| +.+|+|.|.|.+.|
T Consensus       126 ~~G~~v~L~C~g--~p---~p~i~W~k~~~~-----l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N  188 (204)
T 1sy6_A          126 ISGTTVILTCPQ--YP---GSEILWQHNDKN-----IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG  188 (204)
T ss_dssp             EETTEEEEECSC--CC---SSCEEEEETTEE-----ESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             ecCCcEEEEcCC--CC---CCceEEEECCEE-----CCCccCCceEecCCCEEEEeeCCccccCEEEEEEecc
Confidence            489999999983  22   257999998754     4311122223 34566999999 99999999999998

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.87  E-value=5.7e-05  Score=60.96  Aligned_cols=75  Identities=15%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------c---cCcceEeec----C--ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------R---SDKFIRTVD----G--GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~---~~~~~~~~~----~--GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|............|.|+.+...++...|-.        .   ..+|+....    .  -|.|.+++.
T Consensus         7 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   86 (116)
T 3bj9_1            7 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQP   86 (116)
T ss_dssp             EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCCh
Confidence            4788999999999998643222234799988753322211210        0   123444322    2  499999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|...+
T Consensus        87 ~DsG~Y~C~~~~   98 (116)
T 3bj9_1           87 EDEAMYYCAMGA   98 (116)
T ss_dssp             GGCEEEEEEECC
T ss_pred             hHCEEEEEEEeC
Confidence            999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.87  E-value=2.6e-05  Score=77.56  Aligned_cols=83  Identities=22%  Similarity=0.319  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEeec-CceEEeeecCCCCeEEEEEeCC-
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      ...+.+.+|+++.|.|....|    .|.++|++++..    .+... .+.++.... ..|.|.+|+.+|+|.|.|.+.| 
T Consensus       348 ~~~~~v~~G~~v~L~C~~~~p----~p~i~W~~~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  419 (440)
T 3zyj_A          348 PADLNVTEGMAAELKCRASTS----LTSVSWITPNGT----VMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS  419 (440)
T ss_dssp             CCCEEECTTSCCEECCEESST----TSEEEEECTTSC----EEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECS
T ss_pred             ccceeeccCceEEEEeecCCC----CCceEEEeCCCc----eeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcC
Confidence            455788899999999998433    358999975432    12111 122444443 4499999999999999999987 


Q ss_pred             --eeeEEEeeeecccc
Q psy10772        356 --TVLCTHNLTVDAHS  369 (378)
Q Consensus       356 --~~l~~~~~~v~~~~  369 (378)
                        ..-++-.+.|+...
T Consensus       420 ~G~~~~~~~~~v~~~~  435 (440)
T 3zyj_A          420 VGNTTASATLNVTGTH  435 (440)
T ss_dssp             SCEEEEEEEEEEC---
T ss_pred             CCcEEEEEEEEEeccc
Confidence              77788888887654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.87  E-value=1.2e-05  Score=69.23  Aligned_cols=70  Identities=24%  Similarity=0.380  Sum_probs=49.9

Q ss_pred             ceeEEEEeCCeeeeeee-eccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCF-VKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRT-VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~-~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~-~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+.+.+|+++.|.|. ..+.+.  .+.++|++++.+     +....+.+ ... .+..|.|.+++.+|+|.|.|.+.+
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~--~~~v~W~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPD--DLSYRWLLNEFP-----VFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESS--CCEEEEEESSTT-----CBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CceEEEECCCCEEEeccccccCCC--ceEEEEEECCce-----eeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence            45678999999999999 543322  157999998765     32112222 222 344599999999999999999986

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.87  E-value=3.4e-05  Score=66.72  Aligned_cols=76  Identities=20%  Similarity=0.435  Sum_probs=48.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c----------cCcceEee-------cCceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R----------SDKFIRTV-------DGGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~-------~~GLlI~~v  341 (378)
                      ..+++..|+++.|+|...+++....+.|+|+.++.+.....+.. .          ...|+...       +.-|.|.++
T Consensus         7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            46889999999999998755442112489998875422211110 0          01122111       123999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.+
T Consensus        87 ~~~D~G~Y~C~~~~  100 (218)
T 4frw_A           87 VQADEGEYECRVST  100 (218)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cHHHCCceeEEEEe
Confidence            99999999998765

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.86  E-value=4.4e-05  Score=68.80  Aligned_cols=74  Identities=15%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec---------c---CcceEeecC-----ceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR---------S---DKFIRTVDG-----GLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~---------~---~~~~~~~~~-----GLlI~~v  341 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+........+...         .   .+|+....+     .|.|.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   84 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA   84 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSC
T ss_pred             CcEEEEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCC
Confidence            3467889999999999876543   368999885322211111100         0   134443321     3999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.+
T Consensus        85 ~~~D~G~Y~C~~~~   98 (246)
T 4dzb_B           85 HPEDSSFYICSART   98 (246)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999985

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.86  E-value=3.5e-05  Score=71.72  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEece--e--eeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVR--L--LQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPA  300 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~--~--lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~  300 (378)
                      .+.+..+...|   .+.|++..--...|....+...  +  ........|.+-.  .....+.+.+|+++.|.|...+.+
T Consensus       163 ~L~i~~v~~~d---~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~~~~~~~~g~~v~l~C~~~g~P  237 (315)
T 1itb_B          163 RLIVMNVAEKH---RGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS--PANETMEVDLGSQIQLICNVTGQL  237 (315)
T ss_dssp             EEEESSCCGGG---CEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECS--CCSEEEECCSSSCEEEEEEEEECT
T ss_pred             eEEEEeceehh---CcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEec--CCCCcEEEeCCCcEEEEEEEecCC
Confidence            34454554444   5789988442566766433211  1  1111011121111  112236788999999999997654


Q ss_pred             CCCCCCeEEEEecccCceeeEeecc----CcceE----------eecCceEEeeecCCC-CeEEEEEeCC---eeeEEEe
Q psy10772        301 SMANQPMSWYHYSKDKGRYQIKFRS----DKFIR----------TVDGGLVIMAVEELD-AGKYDCWLGN---TVLCTHN  362 (378)
Q Consensus       301 ~La~~~v~W~~~~~~~~~~~l~~~~----~~~~~----------~~~~GLlI~~v~~~D-sG~Y~C~~~~---~~l~~~~  362 (378)
                      .   |.++|++++.+     |....    ++++.          ....-|.|.+++..| +|.|.|.+.|   ..-++..
T Consensus       238 ~---p~i~W~~~g~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~  309 (315)
T 1itb_B          238 S---DIAYWKWNGSV-----IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ  309 (315)
T ss_dssp             T---SEEEEEETTEE-----CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEE
T ss_pred             C---CeeEEEECCEE-----CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEE
Confidence            4   68999998754     21000    11111          122369999999999 9999999988   5566777


Q ss_pred             eeecc
Q psy10772        363 LTVDA  367 (378)
Q Consensus       363 ~~v~~  367 (378)
                      |.|.+
T Consensus       310 l~v~~  314 (315)
T 1itb_B          310 LIYPV  314 (315)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            76643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.86  E-value=2.9e-05  Score=68.67  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=57.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---ecc---CcceE----------eec-CceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---FRS---DKFIR----------TVD-GGLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---~~~---~~~~~----------~~~-~GLlI~~v  341 (378)
                      ...+.+.+|+++.|.|.....+.  .+.|+|+.++....+..+.   ...   ..++.          ... ..|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             CCcEEEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            45678999999999999876543  2479999876541100011   000   12222          233 34999999


Q ss_pred             cCCCCeEEEEEeCC----eeeEEEeeeeccc
Q psy10772        342 EELDAGKYDCWLGN----TVLCTHNLTVDAH  368 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~----~~l~~~~~~v~~~  368 (378)
                      +.+|+|.|.|.+.+    ..-....|.|...
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  115 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAK  115 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEec
Confidence            99999999999765    3455666777654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.86  E-value=3.2e-05  Score=70.89  Aligned_cols=80  Identities=23%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE-ecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCW  352 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~-~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~  352 (378)
                      ....+.+.+|+++.|.|...+.+.    .++|+. ++..     +.  .+.++....+|    |.|.+++..|+|.|.|.
T Consensus        10 ~~~~~~v~~G~~v~l~C~~~~~p~----~v~W~~~~g~~-----~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   78 (291)
T 2wim_A           10 SLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGEK-----II--STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ   78 (291)
T ss_dssp             SCSEEEEETTCCEEEEEEEESCCS----EEECBCTTCCB-----CC--CBTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eccceEecCCCcEEEEEEEeCCCC----ceEEECCCCcC-----cc--CCCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence            346678999999999999875432    799987 3332     32  33444444444    99999999999999999


Q ss_pred             eCCe----eeEEEeeeeccc
Q psy10772        353 LGNT----VLCTHNLTVDAH  368 (378)
Q Consensus       353 ~~~~----~l~~~~~~v~~~  368 (378)
                      +.+.    .-....|.|...
T Consensus        79 ~~n~~g~~~~~~~~l~v~~~   98 (291)
T 2wim_A           79 ATDAKGQTQEATVVLEIYQK   98 (291)
T ss_dssp             EECSSSCEEEEEEEEEEECC
T ss_pred             EecccCceEEEEEEEEecCC
Confidence            9762    235566666544

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.86  E-value=6.8e-05  Score=68.41  Aligned_cols=74  Identities=19%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc----------Cc-ceEeecCc---eEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS----------DK-FIRTVDGG---LVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~----------~~-~~~~~~~G---LlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|+|.....   +.+.|.|+.+....+...+....          .+ |+.....+   |.|.+|+.+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~---~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~   84 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNS---QYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCT---TCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred             CCeEEEeCCCcEEEEEEeCCC---CcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence            346789999999999975432   33589998864332221111100          11 44444444   999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|.+.+
T Consensus        85 DsG~Y~C~~~~   95 (253)
T 3to4_D           85 QGRTLYCTSSA   95 (253)
T ss_dssp             SCEEEEEEEEC
T ss_pred             hCeEEEEEEec
Confidence            99999999863

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.86  E-value=4.1e-05  Score=62.55  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCce------eeEeeccCcceEee-cCceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR------YQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~------~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C  351 (378)
                      ...+.+.+|+++.|+|....+ ......|.|+.+......      ..+..+-.+|+... +..|.|.+|+.+|+|.|.|
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C   88 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSST-TAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFC   88 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESC-CCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEE
T ss_pred             cCCEEEecCCCEEEEEEecCC-CCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEE
Confidence            456789999999999998653 222236899876421000      00100113354433 3459999999999999999


Q ss_pred             EeC----CeeeEEEeeeeccc
Q psy10772        352 WLG----NTVLCTHNLTVDAH  368 (378)
Q Consensus       352 ~~~----~~~l~~~~~~v~~~  368 (378)
                      ...    ...-+...|+|...
T Consensus        89 ~v~~~~~g~~~~~~~L~V~~p  109 (117)
T 3q0h_A           89 IYHTYPDGTYTGRIFLEVLES  109 (117)
T ss_dssp             EEEEETTCCEEEEEEEEEECC
T ss_pred             EEEECCCCCeEEEEEEEEEcc
Confidence            863    24456778888754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=97.85  E-value=8.3e-05  Score=70.35  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             EEEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCccccc--ccceeEEEEeCCeeeeeeeeccC--C
Q psy10772        226 LVVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESS--VGRLKQTVTWGQSVHLSCFVKLP--A  300 (378)
Q Consensus       226 IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~--~~~k~~~~~~G~s~~L~C~~r~~--~  300 (378)
                      +.+..++..|   .+.|++. +....|.... +...+...      ..+...  .......+.+|+++.|.|.....  .
T Consensus        81 L~i~~~~~~D---~G~Y~C~-a~n~~~~~~~~~~l~V~~~------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  150 (349)
T 4dep_C           81 LWFRPTLLND---TGNYTCM-LRNTTYCSKVAFPLEVVQK------DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFP  150 (349)
T ss_dssp             EEESSCCGGG---CEEEEEE-EECSSCEEEEEEEEEEECC------CTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSC
T ss_pred             EEEccCChhh---CEEEEEE-EecCCceEEEEEEEEEecC------CcccCcccccCcceeeecCccEEEEcCCCccccc
Confidence            3444444444   5889987 4445554431 22222221      122211  12345678889999999963111  1


Q ss_pred             CCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee-------eEEEeeeecc
Q psy10772        301 SMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV-------LCTHNLTVDA  367 (378)
Q Consensus       301 ~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~-------l~~~~~~v~~  367 (378)
                      .-+.|.++|+.++.+     |.  ...++...+..|.|.+++.+|+|.|.|.+.|..       -+...|.|..
T Consensus       151 g~p~~~v~W~k~~~~-----l~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          151 SSVKPTITWYMGCYK-----IQ--NFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             TTSCCEEEEEETTEE-----CC--SCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCceEEEeeCCEE-----CC--CccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            223368999988754     42  224445555569999999999999999998732       4566666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.85  E-value=1.7e-05  Score=79.26  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=57.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEeec-CceEEeeecCCCCeEEEEEeCC-
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVD-GGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~-~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      .+.+.+.+|+++.|.|...     |.|.|+|+.++..    .+... .+.++.... ..|.|.+|+.+|+|.|.|.+.| 
T Consensus       359 ~~~~~v~~G~~~~l~C~~~-----p~p~i~W~~~~~~----~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~  429 (452)
T 3zyi_A          359 PRDLNISEGRMAELKCRTP-----PMSSVKWLLPNGT----VLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV  429 (452)
T ss_dssp             CCCEECCTTSCCEECCBCC-----TTSEEEEECTTSC----EECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECS
T ss_pred             cccccccCCCEEEEEEeCC-----CCCcEEEEeCCCc----EeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcC
Confidence            4557889999999999985     3468999875432    12111 122444444 4499999999999999999988 


Q ss_pred             --eeeEEEeeeecccccC
Q psy10772        356 --TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       356 --~~l~~~~~~v~~~~c~  371 (378)
                        ..-++..|.|.+.+=.
T Consensus       430 ~G~~~~~~~l~v~~~~~~  447 (452)
T 3zyi_A          430 AGNSNASAYLNVSTAGTH  447 (452)
T ss_dssp             SCEEEEEEEEEC------
T ss_pred             CCcEEEEEEEEEEccccc
Confidence              7788888988876543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.85  E-value=5.5e-05  Score=66.19  Aligned_cols=87  Identities=23%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC-cee----eE-eeccC--cceEe-ecCc-eEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK-GRY----QI-KFRSD--KFIRT-VDGG-LVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~-~~~----~l-~~~~~--~~~~~-~~~G-LlI~~v~~~DsG~  348 (378)
                      .+.+.+.+|+++.|.|....+..  .+.|.|++.+... ..+    .. ....+  +|+.. ..+| |.|.+|+.+|+|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~--~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLAS--YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCS--CSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCc--eeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeE
Confidence            45788999999999998743322  3579998842110 000    00 00011  35444 3444 9999999999999


Q ss_pred             EEEEeCC--eeeEEEeeeecc
Q psy10772        349 YDCWLGN--TVLCTHNLTVDA  367 (378)
Q Consensus       349 Y~C~~~~--~~l~~~~~~v~~  367 (378)
                      |.|...+  ..-..+.|.|.+
T Consensus        84 Y~C~v~~~~~~~~~~~L~V~~  104 (180)
T 2dru_A           84 YYMRMLHETEDQWKITMEVYE  104 (180)
T ss_dssp             EEEEEESSSEEEEEEEEEEEC
T ss_pred             EEEEEEcCCeEEEEEEEEEEC
Confidence            9999654  345667788765

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.85  E-value=3e-05  Score=67.82  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=48.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEee-ecCCCCeEEEEEeCCe---e
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA-VEELDAGKYDCWLGNT---V  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~-v~~~DsG~Y~C~~~~~---~  357 (378)
                      .....|+++.|.|...++     ++|+|+.++.+     |.  .+     .+.-|.|.+ ++.+|+|.|.|.+.|.   .
T Consensus         9 ~v~~~G~~v~L~C~~~~~-----~~i~W~k~g~~-----l~--~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~   71 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDSD-----ENLKWEKNGQE-----LP--QK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNT   71 (186)
T ss_dssp             EEEEETTEEEEECSSCCC-----TTCEEEETTEE-----EC--SC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCC
T ss_pred             EEEeCCcEEEEEEeCCCC-----CceEEEECCEE-----CC--CC-----CCCEEEECCCCccccCEEEEEEEEeCCCcE
Confidence            345789999999998541     35999988754     53  21     234599999 9999999999999873   3


Q ss_pred             eEEEeeee
Q psy10772        358 LCTHNLTV  365 (378)
Q Consensus       358 l~~~~~~v  365 (378)
                      .....+.|
T Consensus        72 ~~~~~~~v   79 (186)
T 1jbj_A           72 YLYLKARV   79 (186)
T ss_dssp             CEEECCCC
T ss_pred             EEEEEEEE
Confidence            34444444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.85  E-value=4.1e-05  Score=69.44  Aligned_cols=86  Identities=23%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cC---ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DG---GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~---GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|.|+.+........+..       ..+.|+... .+   .|.|.+|+.+|+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIG---NNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCC---ceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCE
Confidence            35578899999999999865543   5899988753221111110       012344432 12   3999999999999


Q ss_pred             EEEEEeCCee----eEEEeeeecc
Q psy10772        348 KYDCWLGNTV----LCTHNLTVDA  367 (378)
Q Consensus       348 ~Y~C~~~~~~----l~~~~~~v~~  367 (378)
                      .|.|.+.+..    -....|.|..
T Consensus        85 ~Y~C~~~n~~~~~~~~~~~L~V~~  108 (242)
T 2znx_A           85 MYFCQQSNSXPYTFGGGTKLEITG  108 (242)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEEEeEecCCceEECCCEEEEEcC
Confidence            9999998741    1234566654

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.85  E-value=5.6e-05  Score=61.12  Aligned_cols=75  Identities=24%  Similarity=0.291  Sum_probs=49.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee---cC---ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV---DG---GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~---~~---GLlI~~v~  342 (378)
                      .+.+.+.+|+++.|.|.....  .....|.|+.+....+..-|..          ...+|+...   ..   -|.|.+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   84 (116)
T 1tvd_A            7 SPDQTVASGSEVVLLCTYDTV--YSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR   84 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECC--SSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             CCcEEEecCCeEEEEeEeEcC--CCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCC
Confidence            356788999999999997532  1234799988753322211210          013454433   22   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus        85 ~~DsG~Y~C~~~~   97 (116)
T 1tvd_A           85 TEDSATYYCAFTL   97 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             hHHCEEEEEEEeC
Confidence            9999999999875

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.85  E-value=6.2e-05  Score=66.07  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee-cC---ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV-DG---GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~-~~---GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+|+++.|.|...     +.+.|.|+.+........+...       ..+|+... ..   -|.|.+|+.+|+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~-----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT-----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVY   83 (211)
T ss_dssp             EEEECTTCEEEEEEECC-----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             eEEEcCCCCEEEEEEEC-----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEE
Confidence            67888999999999986     2358999986422211111100       12233322 11   399999999999999


Q ss_pred             EEEeCCe-----eeEEEeeeeccc
Q psy10772        350 DCWLGNT-----VLCTHNLTVDAH  368 (378)
Q Consensus       350 ~C~~~~~-----~l~~~~~~v~~~  368 (378)
                      .|.+.+.     .-....|+|...
T Consensus        84 ~C~~~~~~~~~~~~~~~~l~V~~~  107 (211)
T 3tv3_L           84 YCGSLVGNWDVIFGGGTKLTVLGQ  107 (211)
T ss_dssp             EEEEEETTTEEEECCCEEEEECCS
T ss_pred             EEEEecCCCceeECCCceEEEeCC
Confidence            9999862     223456777643

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=97.85  E-value=2e-05  Score=64.89  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=56.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc------CceeeEe-eccCcceEee-c-CceEEeeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD------KGRYQIK-FRSDKFIRTV-D-GGLVIMAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~------~~~~~l~-~~~~~~~~~~-~-~GLlI~~v~~~DsG~Y  349 (378)
                      ...+.+.+|+++.|.|....+...  ..+.|+++...      .+..... .+-.+|+... . ..|.|.+++.+|+|.|
T Consensus        11 ~~pv~~~~G~~VtL~c~~~~~~~~--~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y   88 (121)
T 2edo_A           11 LVHMTVVSGSNVTLNISESLPENY--KQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTY   88 (121)
T ss_dssp             CBCCEEETTSCEEECCSSCCCSSE--EEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEE
T ss_pred             cEEEEEEeCCCEEEeCCCCCCCce--eEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEE
Confidence            345789999999999986323221  36899998631      0000000 0012243332 2 3599999999999999


Q ss_pred             EEEeCC----eeeEEEeeeeccc
Q psy10772        350 DCWLGN----TVLCTHNLTVDAH  368 (378)
Q Consensus       350 ~C~~~~----~~l~~~~~~v~~~  368 (378)
                      .|...+    .....+.|+|.+.
T Consensus        89 ~c~v~~~~~~~~~~~~~L~V~~~  111 (121)
T 2edo_A           89 IMRVLKKTGNEQEWKIKLQVLDP  111 (121)
T ss_dssp             EEEEEETTTEEEECCEECEEECC
T ss_pred             EEEEEcCCCcEEEEEEEEEEECC
Confidence            999863    3456788888763

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.84  E-value=4.5e-05  Score=68.91  Aligned_cols=74  Identities=22%  Similarity=0.362  Sum_probs=50.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+.   +.+.|+.+........+..       ...+|+.....    -|.|.+++.+|+|
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~---~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   87 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIR---NYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIG   87 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCEEEeeCCCcEEEEEEecccCC---ceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCE
Confidence            45678899999999999865433   5899998753222111110       01234433222    3999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus        88 ~Y~C~~~n   95 (250)
T 3esu_F           88 TYFCQQGN   95 (250)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEee
Confidence            99999986

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.84  E-value=8.3e-05  Score=66.21  Aligned_cols=123  Identities=13%  Similarity=0.149  Sum_probs=66.9

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMAN  304 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~  304 (378)
                      .+.+..++..|   .+.|.+. +....|..... ..+....   .     .........+.+|+.+.|.|...+.  -+.
T Consensus        84 ~L~I~~v~~~D---~G~Y~C~-a~n~~~~~~~~-v~~~~~~---~-----~~~~~~~~~~~~g~~v~l~c~~~g~--~P~  148 (226)
T 4f80_A           84 ALRIHNVTASD---SGKYLCY-FQDGDFYEKAL-VELKVAA---L-----GSDLHVDVKGYKDGGIHLECRSTGW--YPQ  148 (226)
T ss_dssp             EEEESSCCGGG---CEEEEEE-EEETTEEEEEE-EEEEEEB---C-----CCCCEEEEEEEETTEEEEEEEEEEE--BSC
T ss_pred             EEEEeeCchHH---CeeEEEE-EECCCcEEEEE-EEEeecc---c-----eecccceeeeccCCceeeEEEeccC--CCC
Confidence            34455555555   6889887 34455543211 1111110   0     0012345677889999999998652  123


Q ss_pred             CCeEEEEecccCceeeEeeccCcceEeecCce----EEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        305 QPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGL----VIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       305 ~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GL----lI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      |.|+|+.++.+.    +. .....+...++|+    .+..|+.+|+|.|.|.+.|   ..-++..|.|.+
T Consensus       149 p~i~W~k~~~~~----~~-~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          149 PQIQWSNNKGEN----IP-TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CEEEEECTTSCB----CC-CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             CEEEEEECCceE----cC-CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            689998754320    21 1122334445664    3567899999999999987   334566666644

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.84  E-value=4e-05  Score=69.62  Aligned_cols=78  Identities=19%  Similarity=0.325  Sum_probs=50.7

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--c---------cCcceEeec------CceEEee
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--R---------SDKFIRTVD------GGLVIMA  340 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~---------~~~~~~~~~------~GLlI~~  340 (378)
                      ....+.+.+|+++.|.|....+...+.+.|.|+.++.......+..  .         -..|+....      .-|.|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            4566889999999999998633333335799998764321111100  0         013333222      4599999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      |+.+|+|.|.|.+.+
T Consensus        91 v~~~D~G~Y~C~~~~  105 (268)
T 3mj6_A           91 VQKADEGIYTCEIRL  105 (268)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhHCEEEEEEEEe
Confidence            999999999999964

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=97.83  E-value=2.1e-05  Score=72.96  Aligned_cols=78  Identities=24%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..+.+.+|+++.|.|......  +.+.++|+.++..     |.  .+.++..  ....|.|.+++.+|+|.|.|.+.+  
T Consensus        14 ~~~~v~~G~~v~l~C~~~~~~--p~~~v~W~~~~~~-----~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   84 (317)
T 2y25_A           14 LSWEVTGECNVLLKCKVANIK--KETHIVWYKDERE-----IS--VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR   84 (317)
T ss_dssp             EEEEEETTTEEEEEEEEESCC--TTCEEEEEETTEE-----EC--CSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred             eeEEECCCCeEEEEEEEcCCC--CCCEEEEEECCeE-----cC--CCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence            347889999999999986541  2258999988754     43  2333222  223699999999999999999976  


Q ss_pred             -eeeEEEeeeec
Q psy10772        356 -TVLCTHNLTVD  366 (378)
Q Consensus       356 -~~l~~~~~~v~  366 (378)
                       ....+..|.|.
T Consensus        85 g~~~~~~~l~v~   96 (317)
T 2y25_A           85 GKDKSRLKLVDE   96 (317)
T ss_dssp             CEEEEEECCSTH
T ss_pred             CcEEEEEEEEEe
Confidence             44455555554

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=97.82  E-value=0.00012  Score=70.15  Aligned_cols=123  Identities=18%  Similarity=0.198  Sum_probs=74.3

Q ss_pred             eEEEEEEEEeeeecCCCeEEEEEEECCCeeEEE-EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCC
Q psy10772        224 THLVVDVVQYEVFGTTSEYIVYFAATTTLRTVF-VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM  302 (378)
Q Consensus       224 T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~-V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~L  302 (378)
                      ..+.+..++..|   .+.|.+. +-...|.... +...+...     |. ..  .....+.+.+|+++.|.|...+.+. 
T Consensus        63 ~~L~i~~v~~~D---~G~Y~C~-a~n~~g~~~~~~~l~V~~~-----P~-~~--~~~~~~~~~~g~~~~l~C~~~g~p~-  129 (389)
T 2jll_A           63 SSLHIKDVKLSD---SGRYDCE-AASRIGGHQKSMYLDIEYA-----PK-FI--SNQTIYYSWEGNPINISCDVKSNPP-  129 (389)
T ss_dssp             EEEEEESCCGGG---CEEEEEE-EECSSCEEEEEEEEEEEEE-----EE-EC--CSCCEEEECTTCCEEEEECEEEESC-
T ss_pred             ceEEEcccChhh---CEEEEEE-EEeCCCCcceEEEEEEEeC-----CE-Ee--cCcceEEeccCCEEEEEEEEEecCC-
Confidence            355666665555   5789988 4445565431 11111111     01 10  1223356788999999999876553 


Q ss_pred             CCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772        303 ANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       303 a~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~  366 (378)
                        +.++|+.++.+     |......++.....|    |.|.+++..|+|.|.|.+.|   ....+..|.|.
T Consensus       130 --~~i~W~~~g~~-----l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  193 (389)
T 2jll_A          130 --ASIHWRRDKLV-----LPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA  193 (389)
T ss_dssp             --CEEEEEETTEE-----SSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             --CeEEEEECCcc-----CCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec
Confidence              68999998754     321112233333232    99999999999999999987   44455555553

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=6.4e-05  Score=62.51  Aligned_cols=88  Identities=24%  Similarity=0.349  Sum_probs=56.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC---cceEe---------ecCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD---KFIRT---------VDGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~---~~~~~---------~~~GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|......  +.+.|.|+.+... ...-+....+   .|+..         ..--|.|.+|+.+|+
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~--~~~~v~W~r~~~~-~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   91 (136)
T 2d9c_A           15 EKSVSVAAGESATLRCAMTSLI--PVGPIMWFRGAGA-GRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA   91 (136)
T ss_dssp             CSEEEEETTSCEEECCEESCCC--SCCCCEEEETTTS-SCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTC
T ss_pred             CcEEEEcCCCCEEEEEEEcCCC--CCceEEEEeecCC-CeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHC
Confidence            4568899999999999986431  2347999987522 1111211111   12211         123499999999999


Q ss_pred             eEEEEEeCCe------ee---EEEeeeecccc
Q psy10772        347 GKYDCWLGNT------VL---CTHNLTVDAHS  369 (378)
Q Consensus       347 G~Y~C~~~~~------~l---~~~~~~v~~~~  369 (378)
                      |.|.|.+.+.      .+   ..-.|+|.+..
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           92 GTYYCVKFRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             EEEEEEEEECCSSSCEEEEECCCEEEEEECCC
T ss_pred             EEEEEEEEeCCCCcccceeeCCCeEEEEEeCC
Confidence            9999997642      12   35678887654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=97.82  E-value=2.9e-05  Score=79.64  Aligned_cols=79  Identities=23%  Similarity=0.414  Sum_probs=55.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ec---CceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VD---GGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~---~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++.+     |.  .+.++.. ..   .-|.|.+++.+|+|.|.|.+.
T Consensus        12 ~~~~~v~~G~~v~L~C~~~g~p~---~~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (570)
T 3b43_A           12 LEHVEAAIGEPITLQCKVDGTPE---IRIAWYKEHTK-----LR--SAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE   81 (570)
T ss_dssp             CCCEEECTTSCEEEEEEEESSSS---CEEEEECSSSB-----CC--CCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEEcCCCEEEEEEEEccCCC---CEEEEEECCEE-----cc--CCCCEEEEEECCEEEEEEccCChhhCEEEEEEEE
Confidence            34577889999999999976544   68999998764     43  2222222 12   239999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ....+-.|.|..
T Consensus        82 N~~g~~~~~~~l~v~~   97 (570)
T 3b43_A           82 NSVGAVASSAVLVIKE   97 (570)
T ss_dssp             ETTEEEEEEEEEEECC
T ss_pred             eCCceEEEEEEEEECC
Confidence            7   334455555543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.82  E-value=4.1e-05  Score=65.73  Aligned_cols=81  Identities=22%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE-ecccCceeeEeeccCcceEee-----cCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIRTV-----DGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~-~~~~~~~~~l~~~~~~~~~~~-----~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      ...+.+.+|+++.|.|...+.+  +.+.++|+. ++..     +.. .+.++...     ...|.|.+++..|+|.|.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~--~~~~v~W~~~~g~~-----~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDA--KDKDISWFSPNGEK-----LSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCS--CCCEEEEECTTSCE-----ECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCC--CCceEEEEeCCCcc-----ccC-CCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence            4557789999999999987643  235899998 5543     321 22333322     23599999999999999999


Q ss_pred             eCCe----eeEEEeeeecc
Q psy10772        353 LGNT----VLCTHNLTVDA  367 (378)
Q Consensus       353 ~~~~----~l~~~~~~v~~  367 (378)
                      +.+.    .-+...|.|..
T Consensus        81 ~~~~~~~~~~~~~~l~v~~   99 (191)
T 1epf_A           81 VTAEDGTQSEATVNVKIFQ   99 (191)
T ss_dssp             EEETTTEEEEEEEEEEEEC
T ss_pred             EEcCCCcceEEEEEEEeec
Confidence            8863    33455555543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.81  E-value=2.5e-05  Score=69.50  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=53.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC----ee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN----TV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~----~~  357 (378)
                      ..+.+|+++.|.|.....+.  .+.++|+.++..     +.      .......|.|.+++.+|+|.|.|.+.|    ..
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~-----~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~  164 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKG-----RK------YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVS  164 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCC--CEEEEEEETTEE-----EE------EEEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeEeCCCcEEEEEEecCCCC--CceEEEEECCcE-----ee------cccCCceEEECcCCcccCEEEEEEEEeCCCcee
Confidence            46778999999999854311  247999987754     42      122356799999999999999999987    34


Q ss_pred             eEEEeeeecccc
Q psy10772        358 LCTHNLTVDAHS  369 (378)
Q Consensus       358 l~~~~~~v~~~~  369 (378)
                      -+...|.|.+..
T Consensus       165 s~~~~l~V~~~~  176 (204)
T 3sgj_C          165 SETVQITITQGL  176 (204)
T ss_dssp             CCCEEEEEEC--
T ss_pred             cCcEEEEEeCcC
Confidence            455667776543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.81  E-value=0.00012  Score=67.00  Aligned_cols=92  Identities=16%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeecC-----ceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVDG-----GLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~~-----GLlI~~v~~  343 (378)
                      ...+.+.+|+++.|.|.....    .+.+.|+.+........+..          ...+|+.....     -|.|.+|+.
T Consensus       144 p~~~~v~~G~~v~L~C~~~~~----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~  219 (256)
T 3tf7_C          144 PRNKVTVTGENVTLSCRQTNS----HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASP  219 (256)
T ss_dssp             CSEEEEETTCCEEECEEECSC----CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCG
T ss_pred             CCEEEEeCCCcEEEEEEcCCC----ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCH
Confidence            345677899999999998643    24799988643322111110          01223333222     399999999


Q ss_pred             CCCeEEEEEeCCe-----eeEEEeeeecccccCCCC
Q psy10772        344 LDAGKYDCWLGNT-----VLCTHNLTVDAHSNVADA  374 (378)
Q Consensus       344 ~DsG~Y~C~~~~~-----~l~~~~~~v~~~~c~~~~  374 (378)
                      +|+|.|.|.+.|.     -=..=.|+|.+.++..++
T Consensus       220 ~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~~~~~~  255 (256)
T 3tf7_C          220 SQTSLYFCASSDAPGQLYFGEGSKLTVLELEHHHHH  255 (256)
T ss_dssp             GGCEEEEEEEEEETTEEEECCCEEEEEECGGGGCCC
T ss_pred             HHCEEEEEEecCCCCccEECCCeEEEEEccccCccC
Confidence            9999999999652     111234677777776654

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.81  E-value=5.4e-05  Score=64.99  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG  347 (378)
                      .+.+++.+|+++.|.|.....+   .+.|.|+.+...++...|-..       ..+|+....    --|.|.+|+.+|+|
T Consensus        23 p~~v~v~~G~sVtL~C~~s~~~---~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG   99 (146)
T 2yc1_B           23 PATLSVSPGERATLSCRASQSV---RSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFA   99 (146)
T ss_dssp             CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCEEEEecCCCEEEEEEECCCC---CCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCE
Confidence            4567899999999999986443   247999987543222112110       123444321    13999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus       100 ~Y~C~~~~  107 (146)
T 2yc1_B          100 IYYCQQYR  107 (146)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            99999986

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.81  E-value=3.2e-05  Score=66.34  Aligned_cols=72  Identities=19%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe----e
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT----V  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~----~  357 (378)
                      ..+.+|+++.|.|...+.+.  .+.++|+.++.+     +.      ......-|.|.+++.+|+|.|.|.+.|.    .
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~k~g~~-----~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  164 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKD-----RK------YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS  164 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCC--CEEEEEEETTEE-----EE------EEEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceecCCCCEEEEEEcCCCCC--ceEEEEEECCeE-----cc------CCCCCCEEEEcccChhhCeEEEEEEEcCCCCcc
Confidence            45778999999998754322  247999987754     43      1223567999999999999999999872    3


Q ss_pred             eEEEeeeec
Q psy10772        358 LCTHNLTVD  366 (378)
Q Consensus       358 l~~~~~~v~  366 (378)
                      -....|+|.
T Consensus       165 s~~~~l~V~  173 (175)
T 1fnl_A          165 SETVNITIT  173 (175)
T ss_dssp             CCCEEEEEE
T ss_pred             CccEEEEEe
Confidence            334455554

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=97.81  E-value=4.6e-05  Score=72.64  Aligned_cols=88  Identities=25%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             ccccc-ccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEE
Q psy10772        272 ICESS-VGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       272 ~C~~~-~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~  350 (378)
                      .|... .....+.+..|+++.|.|.....+  ..+.|+|++++..     +.. ...++......|.|.+++..|+|.|.
T Consensus         5 ~~~~~~~p~~~v~~~~G~~v~l~C~~~~~~--~~~~i~W~~~~~~-----~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~   76 (325)
T 1n26_A            5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPE--DNATVHWVLRKPA-----AGS-HPSRWAGMGRRLLLRSVQLHDSGNYS   76 (325)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTT--CCSEEEEEEECSS-----SSC-CCEEEEEESSEEEECSCCGGGCEEEE
T ss_pred             cCCccccCCCcEECCCCCcEEEEeCCCCCC--CCceEEEEECCcc-----CCc-cccccccccceEEecccchhhCeEeE
Confidence            35542 245556668999999999876432  1257999998754     110 11233444566999999999999999


Q ss_pred             EEeCCeeeEEEeeeecc
Q psy10772        351 CWLGNTVLCTHNLTVDA  367 (378)
Q Consensus       351 C~~~~~~l~~~~~~v~~  367 (378)
                      |...+...++-.|.|..
T Consensus        77 C~~~g~~~~~~~L~V~~   93 (325)
T 1n26_A           77 CYRAGRPAGTVHLLVDV   93 (325)
T ss_dssp             EESSSSCSCEEEEEECC
T ss_pred             EEeCCEEeeeEEEEecc
Confidence            99877788888888875

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.81  E-value=4.9e-05  Score=61.62  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-------cCcceEee---cC---ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-------SDKFIRTV---DG---GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-------~~~~~~~~---~~---GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|......  ..+.|.|+.+...++..-|-. .       .++|+...   ..   -|.|.+++.+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~--~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   84 (116)
T 1fo0_A            7 QTSISVMEKTTVTMDCVYETQD--SSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   84 (116)
T ss_dssp             CCEEEEETTCCEEECCEECCCC--SSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCcEEEecCCcEEEEeEecCCC--CCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            3567899999999999986442  224799998754322211210 0       12344442   11   3999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|...+
T Consensus        85 DsG~Y~C~~~~   95 (116)
T 1fo0_A           85 DSAVYFCAMRG   95 (116)
T ss_dssp             GCEEEEEEEEC
T ss_pred             hCEEEEEEEEc
Confidence            99999999875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=97.81  E-value=0.0001  Score=68.14  Aligned_cols=125  Identities=18%  Similarity=0.124  Sum_probs=75.4

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCccccc--ccceeEEEEeCCeeeeeeeeccCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESS--VGRLKQTVTWGQSVHLSCFVKLPAS  301 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~--~~~k~~~~~~G~s~~L~C~~r~~~~  301 (378)
                      .+.+..++..|   .+.|++. +-...|....- ...+....     ......  .....+.+..|+++.|.|...+.+.
T Consensus        63 ~L~i~~v~~~d---~G~Y~C~-a~n~~g~~~~~~~l~V~~~p-----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  133 (305)
T 2nzi_A           63 QLIIASVTDDD---ATVYQVR-ATNQGGSVSGTASLEVEVPA-----KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD  133 (305)
T ss_dssp             EEEESSCCGGG---CSEEEEE-EEETTEEEEEEEEEEECEEE-----EECCCHHHHSSCCEEEETTCCEEEEEEEEEESC
T ss_pred             EEEEccCChhh---CeEEEEE-EEcCCCCccceEEEEEecCC-----ccCCCccccccccEEecCCCEEEEEEEECCCCC
Confidence            45555555554   5789988 34456664321 11111110     111000  0124567888999999999876544


Q ss_pred             CCCCCeEEEEecccCceeeEeeccCcceEee----cCceEEee-ecCCCCeEEEEEeCC---eeeEEEeeeeccc
Q psy10772        302 MANQPMSWYHYSKDKGRYQIKFRSDKFIRTV----DGGLVIMA-VEELDAGKYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       302 La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~----~~GLlI~~-v~~~DsG~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                         |.++|+.++..     +.  .+.++...    ..-|+|.+ ++..|+|.|.|.+.|   ..-.+..|.|.+.
T Consensus       134 ---p~i~W~~~~~~-----~~--~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  198 (305)
T 2nzi_A          134 ---PVITWQKGQDL-----ID--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV  198 (305)
T ss_dssp             ---CEEEEEESSSB-----CC--SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             ---CEEEEEECCEE-----CC--CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecC
Confidence               58999987754     32  23332221    23488998 999999999999987   5556667777643

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.81  E-value=5.9e-05  Score=65.17  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----ccCcceEeecCceEEeeecCCCCeEEEEEeCC-
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      ...+..|..+.|.|...+.+.   |.|+|+.++.+     +..    ..+. ......-|.|.++...|+|.|.|.+.| 
T Consensus       127 ~~~~~~~~~~~~~c~~~g~p~---p~i~W~~~~~~-----~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~g~YtC~a~N~  197 (218)
T 4frw_A          127 ALEEGQGLTLAASCTAEGSPA---PSVTWDTEVKG-----TTSSRSFKHSR-SAAVTSEFHLVPSRSMNGQPLTCVVSHP  197 (218)
T ss_dssp             CEETTCCSEEEEEEEEEEBSC---CEEEEEESSCC-----EEEEEEEECSS-SEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred             eeeeeeccccceeeeccCCcC---ceEEEEECCcc-----cccCceEecCC-cEEEEEEEEEeeCCHHhCeEEEEEEEeC
Confidence            345566889999999876554   68999998764     321    0111 111223488999999999999999988 


Q ss_pred             ----eeeEEEeeeec
Q psy10772        356 ----TVLCTHNLTVD  366 (378)
Q Consensus       356 ----~~l~~~~~~v~  366 (378)
                          ..-..+.|.|-
T Consensus       198 ~g~~~~~~t~~v~V~  212 (218)
T 4frw_A          198 GLLQDQRITHILHVS  212 (218)
T ss_dssp             TCSSCEEEEEECCEE
T ss_pred             CCCeEEEEEEEEEEC
Confidence                33345555554

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.80  E-value=4.2e-05  Score=61.53  Aligned_cols=74  Identities=23%  Similarity=0.341  Sum_probs=49.1

Q ss_pred             ceeEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEe-e-c----------c-CcceEeecC----ceEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIK-F-R----------S-DKFIRTVDG----GLVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~-~-~----------~-~~~~~~~~~----GLlI~~  340 (378)
                      ...+.+.+|+++.|.|... ..+   .+.|.|+.+...++...|. . .          . .+|+.....    -|.|.+
T Consensus         6 p~~~~~~~G~~v~L~C~~~~~~~---~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~   82 (111)
T 2qhl_A            6 LHVKTVKRGENVTMECSMSKVKD---KDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIG   82 (111)
T ss_dssp             CEEEECCTTCCEEECCBCTTCSC---GGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESS
T ss_pred             CceEEEeCCCCEEEEEEccCCcc---cceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECC
Confidence            3567888999999999975 322   2479999875432221121 0 0          0 345444322    399999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      ++.+|+|.|.|.+.+
T Consensus        83 ~~~~DsG~Y~C~~~~   97 (111)
T 2qhl_A           83 TREDDGGEYFCGEVE   97 (111)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CChhHCEEEEEEEcc
Confidence            999999999999875

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.80  E-value=2.1e-05  Score=76.26  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++..    .+.  ...+......-|.|.+++.+|+|.|.|.+.|   .
T Consensus       213 ~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~~~~----~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  283 (384)
T 3kld_A          213 ETVPAEKGTTVKLECFALGNPV---PTILWRRADGK----PIA--RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGK  283 (384)
T ss_dssp             SEEEEETTSCEEEEEEEEEESC---CEEEEEETTCC----CCC--TTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEecCCCcEEEEEEEeecCC---CcEEEEeCCCc----ccc--ccceecCCCcEEEECCCChhhCEEEEEEEEcCCCe
Confidence            3567888999999999876654   68999875321    021  1222222233489999999999999999987   5


Q ss_pred             eeEEEeeeeccc
Q psy10772        357 VLCTHNLTVDAH  368 (378)
Q Consensus       357 ~l~~~~~~v~~~  368 (378)
                      ..++..|+|...
T Consensus       284 ~~~~~~l~v~~~  295 (384)
T 3kld_A          284 NVAKGQLTFYAQ  295 (384)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEecC
Confidence            556667776543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.80  E-value=2.7e-05  Score=72.93  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccCceeeEeeccCcceEeecCceEEe-eecCCCCeEEEEEeCC---ee
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIM-AVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~-~v~~~DsG~Y~C~~~~---~~  357 (378)
                      .+.+|+++.|.|...+.+.   |. ++|++++.+     +.  .+  ......-|.|. +++..|+|.|.|.+.|   ..
T Consensus       243 ~~~~g~~~~l~C~~~g~p~---p~~i~W~~~~~~-----~~--~~--~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~  310 (331)
T 3u83_A          243 WYLQRMDVKLTCKADANPP---ATEYHWTTLNGS-----LP--KG--VEAQNRTLFFKGPINYSLAGTYICEATNPIGTR  310 (331)
T ss_dssp             CBTTCCCEEEEEEEEEESC---CCEEEEEETTBS-----CC--TT--EEEETTEEEECSCCCGGGCEEEEEEEEETTEEE
T ss_pred             eEeCCCeEEEEEeCcCCCC---CCEEEEEECCCc-----cc--cc--ceecCcEEEEeCCCccccCeEEEEEEEeccccc
Confidence            3567999999999876544   56 999988764     32  11  23345668898 8999999999999987   66


Q ss_pred             eEEEeeeecccc
Q psy10772        358 LCTHNLTVDAHS  369 (378)
Q Consensus       358 l~~~~~~v~~~~  369 (378)
                      -++..|.|.+.+
T Consensus       311 ~~~~~l~V~~~~  322 (331)
T 3u83_A          311 SGQVEVNITEAA  322 (331)
T ss_dssp             EEEEEECCBC--
T ss_pred             eEEEEEEEeccc
Confidence            778888887654

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.80  E-value=5.9e-05  Score=62.24  Aligned_cols=77  Identities=22%  Similarity=0.296  Sum_probs=49.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC-CCCCCeEEEEecccCceeeEeec-------cCcceEee-cC---ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS-MANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV-DG---GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~-La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~-~~---GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|.....+. ...+.|.|+.+...+....|-..       ..+|+... ..   -|.|.+|+.+|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~Ds   87 (126)
T 4ffy_L            8 PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDA   87 (126)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHC
Confidence            34578899999999999864430 01247999987532222112110       12343332 12   399999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        88 G~Y~C~~~~   96 (126)
T 4ffy_L           88 ATYYCQQNN   96 (126)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEec
Confidence            999999987

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.80  E-value=1.6e-05  Score=69.62  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=44.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc---eEe---ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF---IRT---VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~---~~~---~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+.+|+++.|.|...+.    .+.++|+.++..     +.  +...   ...   ....|.|.+|+.+|+|.|.|.+.|
T Consensus       110 ~~v~~G~~v~L~C~~~~~----~~~v~W~k~g~~-----~~--~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n  178 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA----FDGFILCKEGED-----EH--PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD  178 (198)
T ss_dssp             SEEETTCCEEEEEECSSC----CSEEEEEEC-------------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             cccCCCCcEEEEEecCCC----CcEEEEEECCCc-----cC--CccccccccCCCcceeEEEecccCcccCeEEEEEEEe
Confidence            567899999999998655    248999998764     21  1111   111   125699999999999999999987


Q ss_pred             e
Q psy10772        356 T  356 (378)
Q Consensus       356 ~  356 (378)
                      .
T Consensus       179 ~  179 (198)
T 1ugn_A          179 S  179 (198)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=69.52  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=46.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+|+++.|.|....++    +.++|+.++..     +.  ...+.......|.|.+++.+|+|.|.|.+.|.
T Consensus       104 ~v~~G~~v~l~C~~~~~~----~~~~w~k~g~~-----~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  166 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGF----DQFALYKEGDP-----AP--YKNPERWYRASFPIITVTAAHSGTYRCYSFSS  166 (184)
T ss_dssp             SSCCTTCEEEEEECSSCC----CEEEEEECCCC-----TT--SCCCCEEEEESSSEEEETTCCSEEEEEEEECT
T ss_pred             eecCCCcEEEEEEcCCCC----cEEEEEECCCc-----Cc--ceecCCCceEEEEEccCCccCCeEEEEEEEeC
Confidence            456799999999975442    37999988764     21  11122334567999999999999999999873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.80  E-value=2.2e-05  Score=75.30  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-----------ecCceEEeeecCCCCeEEEE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-----------VDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-----------~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      .+.+|+++.|.|.+.+.+.   |.|+|+.++..     +.  .+.+...           ...-|.|.+++.+|+|.|.|
T Consensus       257 ~~~~g~~v~l~C~~~g~P~---p~i~W~~~g~~-----l~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C  326 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPA---PSLRWLFNGSV-----LN--ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL  326 (347)
T ss_dssp             CCEESSSEEEEEEEEEESC---CEEEEEETTEE-----CC--CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEE
T ss_pred             cCccCceEEEEEEeeecCC---CcEEEEeCCEE-----CC--CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEE
Confidence            3567999999999976644   68999987653     32  2222111           12239999999999999999


Q ss_pred             EeCC---eeeEEEeeeecc
Q psy10772        352 WLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       352 ~~~~---~~l~~~~~~v~~  367 (378)
                      .+.|   ..-++..|+|.+
T Consensus       327 ~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          327 LAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEEETTEEEEEEEEECSCC
T ss_pred             EEecCCCceeeEEEEEecC
Confidence            9987   666777777654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.80  E-value=4.5e-05  Score=70.72  Aligned_cols=87  Identities=15%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+........+..       ..+.|+.....    -|.|.+++.+|+|
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p---~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   95 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFA   95 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCE
Confidence            4567888999999999986543   35899998754322111211       01234443322    4999999999999


Q ss_pred             EEEEEeCCee----eEEEeeeeccc
Q psy10772        348 KYDCWLGNTV----LCTHNLTVDAH  368 (378)
Q Consensus       348 ~Y~C~~~~~~----l~~~~~~v~~~  368 (378)
                      .|.|.+.+..    -....|+|...
T Consensus        96 ~Y~C~~~n~~~~~~~~~~~l~V~~~  120 (276)
T 3auv_A           96 TYYCQQHYTTPPTFGCGTKVEIKGG  120 (276)
T ss_dssp             EEEEEECSSSSCCCCCCEEEEC---
T ss_pred             EEEEEEecCCcccccCCEEEEEecC
Confidence            9999998741    12245666543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.79  E-value=4.8e-05  Score=66.81  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|.....+.   +.|.|+.+........+..       ...+|+.....    .|.|.+++.+|+|.
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            7 SSASVTVGETVKITCSGDQLPK---NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (212)
T ss_dssp             SEEEEETTSCCCEEEEETTGGG---SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CeEEEeCCCcEEEEEecCCCCC---CeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEE
Confidence            4578899999999999765433   4799988643211111100       01234333222    49999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus        84 Y~C~~~n   90 (212)
T 1nfd_E           84 YYCLSSY   90 (212)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999983

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.78  E-value=9.5e-05  Score=66.67  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC--CCCCCeEEEEecccCceeeEee-ccCc---------ceE-----eecCceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS--MANQPMSWYHYSKDKGRYQIKF-RSDK---------FIR-----TVDGGLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~~~~~~l~~-~~~~---------~~~-----~~~~GLlI~~v  341 (378)
                      ...+.+..|+++.|.|...+.+.  .....|.|+.+........+.. ..+.         ++.     .....|.|.+|
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            45678899999999999854322  1112499998754322110100 0001         100     01112999999


Q ss_pred             cCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        342 EELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+   ..-....|.|..
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  118 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA  118 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEec
Confidence            99999999999875   334556676655

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.78  E-value=4.3e-05  Score=70.39  Aligned_cols=83  Identities=17%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccCceeeEeeccC-----cceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSD-----KFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~~~~~l~~~~~-----~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ...+.+|+++.|.|...+.+.   |. ++|++++....+. +.....     ........-|.|.+++..|+|.|.|.+.
T Consensus       197 ~~~v~~G~~v~l~C~~~g~p~---p~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~  272 (290)
T 2o26_X          197 SHLLKKGDTFTVVCTIKDVST---SVNSMWLKMNPQPQHI-AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYAN  272 (290)
T ss_dssp             BCCCCTTCCEEEEEEEEESST---TCEEEEEEESSSEEEC-CCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred             cceEecCCcEEEEEEEecCCc---ceeEEEecCCCCCccc-eeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEe
Confidence            346788999999999975544   54 9999997651000 010011     1112233459999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++..|.|.+
T Consensus       273 N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          273 NTFGSANVTTTLKVVE  288 (290)
T ss_dssp             CSSCEEEEEEEECC--
T ss_pred             CCCCcEEEEEEEEEEe
Confidence            7   556666777654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.78  E-value=1.7e-05  Score=81.56  Aligned_cols=77  Identities=10%  Similarity=0.054  Sum_probs=56.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      .+.+.+|+++.|.|...+.+.   |.|+|+.++.+     |.  .+.+.......|.|.+++.+|+|.|.|.+.|   ..
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~---p~i~W~k~g~~-----l~--~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~  404 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQ---IRCTWTFSRKS-----FP--CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF  404 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESC---CEEEEEETTEE-----EE--CBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEE
T ss_pred             cEEEcCCCeEEEEEEEEecCC---CEEEEEECCEE-----Cc--CCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcE
Confidence            456778999999999876544   68999988754     53  2333333455699999999999999999987   45


Q ss_pred             eEEEeeeecc
Q psy10772        358 LCTHNLTVDA  367 (378)
Q Consensus       358 l~~~~~~v~~  367 (378)
                      -.+..|.|..
T Consensus       405 ~~~~~L~V~~  414 (527)
T 3qs9_E          405 TKMFTLNIRR  414 (527)
T ss_dssp             EEEEEEC--C
T ss_pred             EEEEEEEEec
Confidence            5677777763

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.78  E-value=5e-05  Score=69.52  Aligned_cols=90  Identities=19%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee-cC---ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV-DG---GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~-~~---GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|.|+.+........|...       .+.|+... ..   -|.|.+++.+|+|
T Consensus       146 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  222 (257)
T 1f3r_B          146 PSLLSASVGDRVTLSCKGSQNIN---NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA  222 (257)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCB---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             CCEEEEcCCCCEEEEEEECCcCC---CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCE
Confidence            34567889999999999865433   47999985422111011100       12343322 11   3999999999999


Q ss_pred             EEEEEeCCeeeEEE----eeeecccccCC
Q psy10772        348 KYDCWLGNTVLCTH----NLTVDAHSNVA  372 (378)
Q Consensus       348 ~Y~C~~~~~~l~~~----~~~v~~~~c~~  372 (378)
                      .|.|.+.|.. ..+    .|+|....-.+
T Consensus       223 ~Y~C~a~n~~-~~~g~gt~l~V~~~~~~~  250 (257)
T 1f3r_B          223 TYFCYQYNNG-YTFGAGTKLELKAAEQKL  250 (257)
T ss_dssp             EEEEEEESSS-EEECCCCEECCSSSCCCC
T ss_pred             EEEEEEeCCC-CeECCCEEEEEeCCCcCC
Confidence            9999998854 333    56666554433

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.77  E-value=0.00011  Score=59.01  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      .+.+++.+|+++.|.|......   .+.|.|+.+...++...|-. .      ..+|+...      .--|.|.+++.+|
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~---~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T 2z35_A            7 GGQVALSEEDFLTIHCNYSASG---YPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (112)
T ss_dssp             CSEEEEETTCCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTT
T ss_pred             CCcEEEcCCCCEEEEEEECCCC---CCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhh
Confidence            3567899999999999986442   24799998754322211211 0      12344432      1239999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|.+.
T Consensus        84 sG~Y~C~~~   92 (112)
T 2z35_A           84 SAVYYCALS   92 (112)
T ss_dssp             CSEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            999999986

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=97.77  E-value=7e-05  Score=63.08  Aligned_cols=92  Identities=20%  Similarity=0.322  Sum_probs=59.3

Q ss_pred             eeEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEe-ec-----------c-CcceEeecC----ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIK-FR-----------S-DKFIRTVDG----GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~-~~~~~~~~~----GLlI~~v  341 (378)
                      +.+.+.+|+++.|.|... ...   ...+.|+.+...++...|. ..           . .+|+.....    -|.|.++
T Consensus         7 ~~v~v~~G~~vtL~C~~s~~~~---~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~~   83 (137)
T 3bdb_A            7 HVKTVKRGENVTMECSMSKVTN---KNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGA   83 (137)
T ss_dssp             EECCCCTTCEECCCCBCTTCCC---GGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESC
T ss_pred             CeEEEcCCCCEEEEeecCCCcC---cceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECCC
Confidence            456778899999999975 222   2479999875432221121 00           0 245443322    2999999


Q ss_pred             cCCCCeEEEEEeCCeee----EEEeeeecccccCCCC
Q psy10772        342 EELDAGKYDCWLGNTVL----CTHNLTVDAHSNVADA  374 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~l----~~~~~~v~~~~c~~~~  374 (378)
                      +.+|+|.|.|...+...    ..-.|+|.......|+
T Consensus        84 ~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~~~~~~  120 (137)
T 3bdb_A           84 REDDGGEYFCGEVEGIIIKFTSGTRLQFEGSNEGSKS  120 (137)
T ss_dssp             CSTTCEEEEEEEECSSCEEEEEEEEECCCCCCCCSSS
T ss_pred             CHHHCEEEEEEEccCCeEEECCCEEEEEECCCCCccc
Confidence            99999999999976322    3447888777665544

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.77  E-value=3.7e-05  Score=68.39  Aligned_cols=70  Identities=27%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC-eeeEE
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN-TVLCT  360 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~-~~l~~  360 (378)
                      ..+.+|+++.|.|...+.+.  ...++|+.++..     |.  .+      ..-|.|.+++.+|+|.|.|.+.| ..-..
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~--~~~v~W~k~g~~-----l~--~~------~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~   81 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPE--DQSTQWFHNESL-----IS--SQ------ASSYFIDAATVDDSGEYRCQTQLSTLSDP   81 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSS--CCCEEEEETTEE-----ES--CC------SSEEEESSCCGGGCEEEEEEETTSBCCCC
T ss_pred             eEEECCCCEEEEEcCCCCCC--CcEEEEEECCEE-----cc--cC------ccEEEEecccccCCEEEEEEeCCCccccc
Confidence            57889999999999865432  124999987653     42  11      26799999999999999999987 22233


Q ss_pred             Eeeeec
Q psy10772        361 HNLTVD  366 (378)
Q Consensus       361 ~~~~v~  366 (378)
                      ..|.|.
T Consensus        82 ~~l~V~   87 (204)
T 3sgj_C           82 VQLEVH   87 (204)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            445554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.77  E-value=1.7e-05  Score=68.04  Aligned_cols=72  Identities=21%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             EEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe----
Q psy10772        282 QTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT----  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~----  356 (378)
                      ..+.+|+++.|.|... .++.   +.++|+.++..     +.  .    ......|.|.+++.+|+|.|.|.+.|.    
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~-----~~--~----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~  160 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDV---YKVIYYKDGEA-----LK--Y----WYENHNISITNATVEDSGTYYCTGKVWQLDY  160 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCE---EEEEEEETTEE-----CC--S----CCCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceeeCCCCEEEEEEecCCCCc---eEEEEEECCEE-----Ee--e----ecCCCeEEECCCCcccCEEEEEEEEeCCcce
Confidence            4577899999999984 3333   47999987653     42  1    122456999999999999999999973    


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-....|+|..
T Consensus       161 ~s~~~~l~V~~  171 (176)
T 1f2q_A          161 ESEPLNITVIK  171 (176)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EecCEEEEEec
Confidence            23345666654

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.77  E-value=2.4e-05  Score=63.92  Aligned_cols=76  Identities=18%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC-CCCCCCeEEEEec--ccCceeeEeeccCcceEee---------cCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA-SMANQPMSWYHYS--KDKGRYQIKFRSDKFIRTV---------DGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~-~La~~~v~W~~~~--~~~~~~~l~~~~~~~~~~~---------~~GLlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|+|....+. +.....|.|+.+.  ..+..........+|+...         .--|.|.+|+.+|+
T Consensus        14 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds   93 (120)
T 3noi_A           14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDA   93 (120)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGC
T ss_pred             CCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhC
Confidence            3467899999999999986543 1112368999875  2111000000112343322         12499999999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      |.|.|...
T Consensus        94 G~Y~C~v~  101 (120)
T 3noi_A           94 SIYVCRVE  101 (120)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999976

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=97.76  E-value=0.00013  Score=61.96  Aligned_cols=95  Identities=16%  Similarity=0.134  Sum_probs=56.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-------cCcceEeec------CceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-------SDKFIRTVD------GGLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-------~~~~~~~~~------~GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|......  ....|.|+.+....+...|-. .       ..+|+....      --|.|.+|+.+
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~--~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   84 (142)
T 2ol3_A            7 QTSISVMEKTTVTMDCVYETQD--SSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   84 (142)
T ss_dssp             CSEEEEETTCCEEECCBCCCCC--SSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCTT
T ss_pred             CCeEEEecCCCEEEEEEecCCc--CCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCChh
Confidence            3567889999999999975432  123699998854332221211 1       123554421      13999999999


Q ss_pred             CCeEEEEEeCCe-----ee----EEEeeeecccccCCCCC
Q psy10772        345 DAGKYDCWLGNT-----VL----CTHNLTVDAHSNVADAP  375 (378)
Q Consensus       345 DsG~Y~C~~~~~-----~l----~~~~~~v~~~~c~~~~~  375 (378)
                      |+|.|.|...+.     ..    .--.|+|......+|.+
T Consensus        85 Dsg~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~~~~~~~~  124 (142)
T 2ol3_A           85 DSAVYFCAMRGDYGGSGNKLIFGTGTLLSVKPGSADDAKK  124 (142)
T ss_dssp             TCEEEEEEEECSSSSCSSCEEECCCEEEEEECCC------
T ss_pred             hCEEEEEEEEcCcCCcccccEECCCEEEEEecCCcCCCCc
Confidence            999999998641     11    12367787766555544

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=97.76  E-value=5.3e-05  Score=62.60  Aligned_cols=77  Identities=19%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC----CCCCCCeEEEEecccCcee-eEee---------ccCcceEeecC------ceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA----SMANQPMSWYHYSKDKGRY-QIKF---------RSDKFIRTVDG------GLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~----~La~~~v~W~~~~~~~~~~-~l~~---------~~~~~~~~~~~------GLlI  338 (378)
                      ...+.+.+|+++.|+|....+.    ......|.|+.+....+.. -+..         ...+|+....+      -|.|
T Consensus        13 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   92 (132)
T 1nko_A           13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   92 (132)
T ss_dssp             CSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEE
Confidence            3567899999999999986432    2233579999875432111 0111         11245554332      4999


Q ss_pred             eeecCCCCeEEEEEeCC
Q psy10772        339 MAVEELDAGKYDCWLGN  355 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~  355 (378)
                      .+|+.+|+|.|.|...+
T Consensus        93 ~~v~~~DsG~Y~C~v~~  109 (132)
T 1nko_A           93 RDARMSDAGRYFFRMEK  109 (132)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccCcccCeeEEEEEEc
Confidence            99999999999999875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=97.76  E-value=7.2e-05  Score=65.82  Aligned_cols=86  Identities=19%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|...+.+. ..+.|.|+.+........+..           ...+|+....   .   .|.|.+|+.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSI-TSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCG-GGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEecCCCcEEEEEEEecccC-CCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            457889999999999875421 125799988743221111110           0134544331   1   599999999


Q ss_pred             CCCeEEEEEeCCee--eEEEeeeecc
Q psy10772        344 LDAGKYDCWLGNTV--LCTHNLTVDA  367 (378)
Q Consensus       344 ~DsG~Y~C~~~~~~--l~~~~~~v~~  367 (378)
                      +|+|.|.|.+.+..  -....|+|..
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~l~V~~  113 (210)
T 3d9a_H           88 EDTATYYCANWDGDYWGQGTLVTVSA  113 (210)
T ss_dssp             GGCEEEEEEETTSSCBCCCEEEEECC
T ss_pred             ccCEEEEEEEecCcccccceEEEecc
Confidence            99999999998742  1234566654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.76  E-value=2.4e-05  Score=68.76  Aligned_cols=73  Identities=26%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             eeEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCce-eeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGR-YQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~-~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ....+.+|+++.|.|.. .+.+   .|.++|+.++.+... .......+.++... ..-|.|.+++.+|+|.|.|.+.|
T Consensus       116 ~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N  191 (217)
T 2vr9_A          116 KDTRVAKGETALLECGPPKGIP---EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN  191 (217)
T ss_dssp             CCEEECTTSCEEECCBCCCEES---CCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEE
T ss_pred             CccEEcCCCeEEEEEECCCCCC---CCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEc
Confidence            45678889999999987 4443   368999998754100 00001123344333 34499999999999999999987

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.75  E-value=3.7e-05  Score=70.07  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-ee----------ccCcceEeecC------ceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KF----------RSDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~----------~~~~~~~~~~~------GLlI~~v~  342 (378)
                      ..+.+.+|+++.|.|.....+ .+.+.+.|+.+........+ ..          ...+|+....+      -|.|.+|+
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDS-VTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESC-CSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEEcCCCcEEEEEEEEccc-ccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            445688999999999987532 13358999886432221111 00          11234444432      29999999


Q ss_pred             CCCCeEEEEEeCCe
Q psy10772        343 ELDAGKYDCWLGNT  356 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~  356 (378)
                      .+|+|.|.|.+.+.
T Consensus        95 ~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           95 SEDTATYYCSYFDS  108 (257)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             hhhCEEEEEEEecC
Confidence            99999999999874

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.75  E-value=4.4e-05  Score=66.29  Aligned_cols=75  Identities=19%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCce-----eeEeec----cCcce-----------EeecCceEEee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR-----YQIKFR----SDKFI-----------RTVDGGLVIMA  340 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~-----~~l~~~----~~~~~-----------~~~~~GLlI~~  340 (378)
                      .+.+..|+++.|+|...+++......|+|+.++...-.     +.+...    ...+.           ...+.-|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            47788999999999986554411113899876532100     000000    00010           01123499999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      |+.+|+|.|.|.+.+
T Consensus        90 v~~~D~G~Y~C~~~~  104 (225)
T 4fmk_A           90 LRVEDEGNYTCEFAT  104 (225)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHHHCcceEEEEEe
Confidence            999999999999865

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.75  E-value=5.3e-05  Score=62.44  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc-cCceeeEeeccCcceE------eecCceEEeeecCCCCeEEEEEeC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK-DKGRYQIKFRSDKFIR------TVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~-~~~~~~l~~~~~~~~~------~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .++..|+++.|+|..+.=.  ++|+|+|.-.+. ...+  |.....-+--      ++.-=|-|-+|..+|+|.|.|.++
T Consensus        24 ~tv~~G~~~~LeCpv~yc~--~rPnVtWcK~~~~~c~~--L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn   99 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCV--HRPNVTWCKHNGTIWVP--LEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   99 (122)
T ss_dssp             EEECTTSCEEEEEEEECSS--SCCCEEEEEECSSSEEE--CCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             EEEecCCeEEEEeEecCCC--CCCcEEEEecCCeeccc--cccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence            5677899999999997521  246899966532 2111  1110110000      112247788999999999999999


Q ss_pred             C--eeeEEEeeee
Q psy10772        355 N--TVLCTHNLTV  365 (378)
Q Consensus       355 ~--~~l~~~~~~v  365 (378)
                      +  ...-|+.+++
T Consensus       100 ~~~g~ieSHs~ti  112 (122)
T 1xau_A          100 FNSQVINSHSVTI  112 (122)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             CCCCceeeeEEEE
Confidence            8  7777766654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.75  E-value=0.00012  Score=69.16  Aligned_cols=80  Identities=21%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEe--------ecCceEEeeecCCCCe-EE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRT--------VDGGLVIMAVEELDAG-KY  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~--------~~~GLlI~~v~~~DsG-~Y  349 (378)
                      ..+.+.+|+++.|.|...+.+.++.| .++|++++.+     +. ..+.+...        ...-|.|.+++.+|+| .|
T Consensus       236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~-----i~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y  309 (329)
T 3oq3_B          236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW-----II-GLDFGVYSILTSSGGITEATLYFENVTEEYIGNTY  309 (329)
T ss_dssp             SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSC-----BC-CBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEE
T ss_pred             CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCee-----ee-ccCCceeeeecccCceeEeEEEEEeccHHHCCCcE
Confidence            34778899999999999877644445 6799998764     11 01111111        2345999999999999 99


Q ss_pred             EEEeCC---eeeEEEeeee
Q psy10772        350 DCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v  365 (378)
                      .|.+.|   ..-.+-.|.|
T Consensus       310 ~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          310 TCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEecCCceEEEEEEEe
Confidence            999988   4445555554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.75  E-value=4e-05  Score=69.23  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-e-----------eccCcceEeecCc------eEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-K-----------FRSDKFIRTVDGG------LVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~-----------~~~~~~~~~~~~G------LlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.+.|+.+........+ .           ....+|+....++      |.|.+|
T Consensus       139 ~~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  217 (250)
T 3esu_F          139 GPELVKPGASVKISCKDSGYAF-SSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSL  217 (250)
T ss_dssp             CCEEECTTCCEEEEEECCSTTG-GGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceEEcCCceEEEEEEecCCcc-cCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCC
Confidence            4567889999999999865321 1357999987322111111 0           0112455555443      999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.+
T Consensus       218 ~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          218 TSVDSAVYFCARSG  231 (250)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccCEEEEEEEec
Confidence            99999999999985

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.94  E-value=3.9e-06  Score=67.65  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-------eccCcceEeec------CceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-------FRSDKFIRTVD------GGLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-------~~~~~~~~~~~------~GLlI~~v~~~Ds  346 (378)
                      +.+.+.+|+++.|.|.....+   .+.|.|+.+....+...|-       ...++|+....      --|.|.+++.+|+
T Consensus         7 ~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   83 (110)
T 1u3h_A            7 QSLTVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
Confidence            456788999999999985432   3579998874321110010       01233443322      2499999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        84 G~Y~C~~~~   92 (110)
T 1u3h_A           84 ATYFCAASA   92 (110)
Confidence            999999986

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.75  E-value=6.9e-05  Score=68.13  Aligned_cols=89  Identities=19%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC-CC-CCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA-SM-ANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~-~L-a~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~D  345 (378)
                      ...+.+.+|+++.|.|.....+ .. ..+.|.|+.++.......+..       ...+|+.....    .|.|.+++.+|
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            3567888999999999986554 10 025799998753221111110       01234433322    49999999999


Q ss_pred             CeEEEEEeCCeee----EEEeeeecc
Q psy10772        346 AGKYDCWLGNTVL----CTHNLTVDA  367 (378)
Q Consensus       346 sG~Y~C~~~~~~l----~~~~~~v~~  367 (378)
                      +|.|.|.+.+..-    ....|+|..
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             CEEEEEEEEcCCccEECCCEEEEEeC
Confidence            9999999987421    123566643

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.74  E-value=7.5e-05  Score=66.19  Aligned_cols=87  Identities=24%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-------------ccCcceEeec---C---ceEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-------------RSDKFIRTVD---G---GLVIM  339 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-------------~~~~~~~~~~---~---GLlI~  339 (378)
                      ..+.+.+|+++.|.|.....+. ..+.|.|+.+........+. .             ...+|+....   .   .|.|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~-~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTF-SNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCEEEcCCCeEEEEEEEcCCcc-CCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4568889999999999875431 12579998875322111110 0             0124544331   2   59999


Q ss_pred             eecCCCCeEEEEEeCCee----e--EEEeeeecc
Q psy10772        340 AVEELDAGKYDCWLGNTV----L--CTHNLTVDA  367 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~~~----l--~~~~~~v~~  367 (378)
                      +|+.+|+|.|.|.+.+..    .  ..-.|+|..
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            999999999999998741    2  235666664

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.74  E-value=3e-05  Score=67.97  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC----CCCCCCeEEEEecccCceeeEee----------ccCcceEeecC------ceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA----SMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVDG------GLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~----~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~~------GLlI  338 (378)
                      .+.+.+.+|+++.|+|....+.    ..+.+.|.|+.++.......+..          ...+|+....+      -|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            3567889999999999987541    11235799998754211100100          11234444332      3999


Q ss_pred             eeecCCCCeEEEEEeCCe
Q psy10772        339 MAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+|+.+|+|.|.|.+.+.
T Consensus        87 ~~v~~~D~G~Y~C~~~~~  104 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERG  104 (214)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             ccCCHhhCceEEEEEEcC
Confidence            999999999999998763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.74  E-value=1.9e-05  Score=68.86  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      ..+.+|+++.|.|....+.    +.+.|+.++..     +.  ...........|.|.+|+.+|+|.|.|.+.+.
T Consensus       108 ~~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~-----~~--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~  171 (188)
T 1oll_A          108 PEVISGEKVTFYCRLDTAT----SMFLLLKEGRS-----SH--VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  171 (188)
T ss_dssp             SEEETTCEEEEEEECSSSC----SEEEEEEESSS-----CE--EEEEECSSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred             CccccCCEEEEEEEcCCCC----CEEEEEECCcc-----cc--ccccCCCceeEEEECCCCcCCCcEEEEEEEcC
Confidence            4578999999999975432    47899988764     22  11111112345999999999999999998764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.74  E-value=9e-05  Score=70.86  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC--c-ee-eEee---ccCcceEee-------cCceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK--G-RY-QIKF---RSDKFIRTV-------DGGLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~--~-~~-~l~~---~~~~~~~~~-------~~GLlI~~v~~~D  345 (378)
                      +.+.+.+|+++.|.|.....+.   +.|+|++++...  + .. .+..   ....|+...       ..-|.|.+++.+|
T Consensus         2 e~v~~~~G~~v~L~C~~~~~p~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   78 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIED   78 (363)
T ss_dssp             EEEEEETTSCEEECCCCTTCSS---CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGG
T ss_pred             CeEEEeCCCeEEEEEEecCCCc---eEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHH
Confidence            4578899999999999864433   689999886420  0 00 0000   012333221       2239999999999


Q ss_pred             CeEEEEEeCCeeeEEEeeeecc
Q psy10772        346 AGKYDCWLGNTVLCTHNLTVDA  367 (378)
Q Consensus       346 sG~Y~C~~~~~~l~~~~~~v~~  367 (378)
                      +|.|.|.+.+.. ....|.|..
T Consensus        79 ~G~Y~C~~~n~~-~~~~l~V~~   99 (363)
T 1wio_A           79 SDTYICEVEDQK-EEVQLLVFG   99 (363)
T ss_dssp             CEEEEEEETTEE-EEEEEEEEE
T ss_pred             CEEEEEEEEECC-CcEEEEEEe
Confidence            999999999853 356666654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.74  E-value=6.6e-05  Score=67.15  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe----------eccCcceEeec-----CceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK----------FRSDKFIRTVD-----GGLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~----------~~~~~~~~~~~-----~GLlI~~v~~  343 (378)
                      ...+.+.+|+++.|.|.. +.   +.+.|.|+.+....+...+.          .....|+....     .-|.|.+|+.
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~---~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   82 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCNQ-TN---NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP   82 (238)
T ss_dssp             CSEEEEETTCCEEEEEEE-CS---CCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred             ccceEEeCCCEEEEEeec-CC---CCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence            346789999999999993 33   23589999874221111110          00123443321     2399999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.+.
T Consensus        83 ~DsG~Y~C~~~~~   95 (238)
T 2p1y_A           83 SQTSVYFCASGDL   95 (238)
T ss_dssp             GGCEEEEEEEEC-
T ss_pred             ccCeeEEEEEEeC
Confidence            9999999999874

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.73  E-value=0.00011  Score=66.31  Aligned_cols=85  Identities=15%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|.|+.+........+..       ..+.++.....    -|.|.+++.+|+|
T Consensus       142 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  218 (247)
T 2ghw_B          142 PATLSLSPGERATLSCRASQSVR---SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFA  218 (247)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcc---ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCE
Confidence            34567889999999999865543   5799998532211100100       01234333211    2999999999999


Q ss_pred             EEEEEeCCee----eEEEeeeec
Q psy10772        348 KYDCWLGNTV----LCTHNLTVD  366 (378)
Q Consensus       348 ~Y~C~~~~~~----l~~~~~~v~  366 (378)
                      .|.|.+.+..    =....|.|.
T Consensus       219 ~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          219 VYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEccCCCceEcCCEEEEEC
Confidence            9999998721    123456665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.73  E-value=7.2e-05  Score=68.44  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeecC------ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~~------GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|...+.+ ++.+.|.|+.+....+...+..           ....|+....+      -|.|.+|+.
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFS-LTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSC-TTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CccccCCceEEEEEEEeccc-CCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            45688999999999986542 1235799998743211111100           01345444321      499999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.+.
T Consensus        88 ~DsG~Y~C~a~n~  100 (257)
T 1f3r_B           88 DDTGTYYCTRDLY  100 (257)
T ss_dssp             TCCEEEEEEEESS
T ss_pred             ccCEEEEEEEccc
Confidence            9999999999875

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.73  E-value=0.00011  Score=66.09  Aligned_cols=87  Identities=20%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+. ..+.|.|+.+........|. ..           ..+|+....      .-|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTF-TNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEcCCCCEEEEEEecCCcc-ccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3567889999999999864431 12479999875322211110 00           124544432      24999999


Q ss_pred             cCCCCeEEEEEeCCeee----EEEeeeecc
Q psy10772        342 EELDAGKYDCWLGNTVL----CTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~l----~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+...    ....|+|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            99999999999976311    223677765

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.73  E-value=7.4e-05  Score=67.97  Aligned_cols=88  Identities=23%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------------eccCcceEeecCc------eEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------------FRSDKFIRTVDGG------LVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------------~~~~~~~~~~~~G------LlI~~  340 (378)
                      ...+.+.+|+++.|.|...+.+ ++.+.|.|+.+........+.            ....+|+....++      |.|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFN-IKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSC-GGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEeeCCc-ccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            3457888999999999976422 223579998854322211110            0112344443222      99999


Q ss_pred             ecCCCCeEEEEEeCCee----eEEEeeeecc
Q psy10772        341 VEELDAGKYDCWLGNTV----LCTHNLTVDA  367 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~~~----l~~~~~~v~~  367 (378)
                      |+.+|+|.|.|.+.+..    -....|.|.+
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            99999999999998721    1234566654

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=97.73  E-value=0.00014  Score=59.57  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......|.|+.+...++...|-. .           ..+|+....+      -|.|.+++
T Consensus        11 ~~~~~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   89 (123)
T 2p45_B           11 GGLVQAGGSLRLSCAASGY-AYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLK   89 (123)
T ss_dssp             CEEEETTCCEEEEEEEESC-SSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCC
T ss_pred             CEEEeCCCCEEEEEEecCc-cCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4678899999999998632 12234799998754322211211 0           1235554432      39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        90 ~~Dsg~Y~C~~~~  102 (123)
T 2p45_B           90 PEDTATYYCAAGG  102 (123)
T ss_dssp             GGGCEEEEEEESS
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999875

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=97.73  E-value=4e-05  Score=61.31  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----cCcceEeec------CceEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----SDKFIRTVD------GGLVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----~~~~~~~~~------~GLlI~~v~~~DsG  347 (378)
                      +.+.+.+|+++.|+|.......  .+.+.|+.+........|-. .     ..+|+....      -.|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG   81 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHR--TLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAG   81 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGT--TSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             cEEEEeCCCcEEEEeEecCCcC--CceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCE
Confidence            4678899999999999754321  23699988753211100110 0     123444332      14999999999999


Q ss_pred             EEEEEeCCe
Q psy10772        348 KYDCWLGNT  356 (378)
Q Consensus       348 ~Y~C~~~~~  356 (378)
                      .|.|...+.
T Consensus        82 ~Y~C~~~~~   90 (110)
T 2q87_A           82 TYWCGVDTP   90 (110)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEecC
Confidence            999998764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.72  E-value=8.4e-05  Score=67.60  Aligned_cols=96  Identities=19%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC-CCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA-NQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La-~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|.....+... ...+.|+.+........+..       ...+|+.....    -|.|.+|+.+|+
T Consensus       140 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  219 (253)
T 3uzq_A          140 PASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDV  219 (253)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHC
Confidence            3457888999999999986543200 01799998743221110110       01133332222    299999999999


Q ss_pred             eEEEEEeCCe----eeEEEeeeecccccCCCC
Q psy10772        347 GKYDCWLGNT----VLCTHNLTVDAHSNVADA  374 (378)
Q Consensus       347 G~Y~C~~~~~----~l~~~~~~v~~~~c~~~~  374 (378)
                      |.|.|.+.+.    -=..-.|.|.+..-.++.
T Consensus       220 G~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~~~  251 (253)
T 3uzq_A          220 ATYFCQRSNEVPWTFGGGTKLEIKRPLEHHHH  251 (253)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCC------
T ss_pred             EEEEEEEccCCCcEECCCEEEEEcCCCCCccc
Confidence            9999999872    122445666666554443

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.72  E-value=9.4e-05  Score=61.00  Aligned_cols=74  Identities=24%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC---cceEe---------ecCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD---KFIRT---------VDGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~---~~~~~---------~~~GLlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|...+..  +.+.|.|+.+.. ..+.-+....+   .|+..         ..--|.|.+|+.+|+
T Consensus        10 p~~~~v~~G~~vtL~C~~~~~~--~~~~v~W~r~~~-~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (127)
T 2jju_A           10 EKSVSVAAGESATLRCAMTSLI--PVGPIMWFRGAG-AGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA   86 (127)
T ss_dssp             CSEEEEETTSCEEECCEESCCC--SCCCEEEEECSS-TTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEeCCC--CCCEEEEEecCC-CCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHC
Confidence            3567899999999999986431  234799988752 22211211111   13221         123499999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        87 G~Y~C~~~~   95 (127)
T 2jju_A           87 GTYYCVKFR   95 (127)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.72  E-value=7.7e-05  Score=68.52  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+ ++.+.|.|+.+........|..            ..+.|+....+      -|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYT-FTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSC-GGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeecCCCcEEEEEEecccc-CCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            456888999999999986432 1235799998643211111110            11345544321      3999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus        87 ~~~DsG~Y~C~~~n~  101 (256)
T 1nqb_A           87 TSEDSAVYYCARYDY  101 (256)
T ss_dssp             CGGGCEEEEEEECCT
T ss_pred             ChhhCEEEEEEEeec
Confidence            999999999999975

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.72  E-value=5.6e-05  Score=72.41  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cC--ceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DG--GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~--GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++.+     +......++...  ..  -|.|.+++..|+|.|.|.+.|
T Consensus       220 ~~~~~~~G~~v~l~C~~~g~p~---~~i~W~~~g~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  291 (395)
T 1bih_A          220 KDMMAKAGDVTMIYCMYGSNPM---GYPNYFKNGKD-----VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN  291 (395)
T ss_dssp             CSEEEETTSCEEEEEEEECSSC---CCCEEEETTEE-----CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECC
T ss_pred             CceEEECCCcEEEEEEeccCCC---CeEEEEECCEE-----cCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEe
Confidence            4577889999999999865544   57999998754     321122232221  12  499999999999999999998


Q ss_pred             e---eeE-EEeeeeccc
Q psy10772        356 T---VLC-THNLTVDAH  368 (378)
Q Consensus       356 ~---~l~-~~~~~v~~~  368 (378)
                      .   ... +..|.|...
T Consensus       292 ~~g~~~~~~~~l~V~~~  308 (395)
T 1bih_A          292 GVGKPQKHSLKLTVVSA  308 (395)
T ss_dssp             SSSSCEEEEEEEEEEEE
T ss_pred             CCCCceEEEEEEEEEcC
Confidence            2   233 667777643

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.72  E-value=0.0001  Score=64.03  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeec-CceEEeeecCCCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVD-GGLVIMAVEELDAG  347 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~-~GLlI~~v~~~DsG  347 (378)
                      .+.+.+|+++.|.|.....+   .+.++|+.+.......++. .           .-..|+.... ..|.|.+++..|+|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG   84 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred             cceeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence            45788999999999954332   2479998654321111110 0           0122333333 35999999999999


Q ss_pred             EEEEEeCCe----eeEEEeeeecc
Q psy10772        348 KYDCWLGNT----VLCTHNLTVDA  367 (378)
Q Consensus       348 ~Y~C~~~~~----~l~~~~~~v~~  367 (378)
                      .|.|.+.+.    .-....|.|..
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~  108 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVHQ  108 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEEC
T ss_pred             EEEEEEEcccCceeEEEEEEEecc
Confidence            999999873    34555666654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.71  E-value=9.4e-05  Score=67.40  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-e-----------eccCcceEeecCc------eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-K-----------FRSDKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~-----------~~~~~~~~~~~~G------LlI~~v~  342 (378)
                      .+.+.+|+++.|.|...+.+ +..+.|.|+.+........+ .           ....+|+....++      |.|.+|+
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYT-FTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEEeccc-ccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            45688999999999986432 12357999876432221111 0           0122344443222      9999999


Q ss_pred             CCCCeEEEEEeCCe
Q psy10772        343 ELDAGKYDCWLGNT  356 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~  356 (378)
                      .+|+|.|.|.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~  103 (256)
T 3umt_A           90 SEDSAVYYCARDDR  103 (256)
T ss_dssp             GGGCEEEEEEECCS
T ss_pred             cccCEEEEEEEccC
Confidence            99999999999875

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=97.71  E-value=4.8e-05  Score=63.11  Aligned_cols=87  Identities=13%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c----------cCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R----------SDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|............+.|+.+...++...|-. .          ..+|+....   .   -|.|.+++.
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   88 (126)
T 2h32_A            9 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQP   88 (126)
T ss_dssp             EEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCCh
Confidence            5788999999999998643112224699998754322211211 0          123554431   1   399999999


Q ss_pred             CCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        344 LDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       344 ~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      +|+|.|.|...+   +..+...|.|..
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~t~l~v~~  115 (126)
T 2h32_A           89 EDEAMYYCAMGARSSEKEEREREWEEE  115 (126)
T ss_dssp             GGCEEEEEEEECSCCCCCCTTCC----
T ss_pred             hHCEEEEEEEEcCCCCcceeEEEeecc
Confidence            999999999876   334444555533

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=97.71  E-value=3.7e-05  Score=73.66  Aligned_cols=70  Identities=26%  Similarity=0.458  Sum_probs=53.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|++++.+     |.  .      .+.-|.|.+++.+|+|.|.|.+.|   .
T Consensus       315 ~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~-----i~--~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  378 (388)
T 2v5m_A          315 PTQTVDFGRPAVFTCQYTGNPI---KTVSWMKDGKA-----IG--H------SESVLRIESVKKEDKGMYQCFVRNDRES  378 (388)
T ss_dssp             SEEEECTTSCEEEEEEEEEECC---CEEEEEETTEE-----CS--C------CSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CcEEecCCCCEEEEEEeccccC---CeEEEEECCEE-----Cc--c------CCCEEEEecCChhhCEEEEEEEEcCCCc
Confidence            4567888999999999876544   58999998754     42  1      234589999999999999999988   5


Q ss_pred             eeEEEeeee
Q psy10772        357 VLCTHNLTV  365 (378)
Q Consensus       357 ~l~~~~~~v  365 (378)
                      .-++..|.|
T Consensus       379 ~~~~~~l~V  387 (388)
T 2v5m_A          379 AEASAELKL  387 (388)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            566666655

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=97.71  E-value=5.9e-05  Score=70.97  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec---cCcceE---------eecCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR---SDKFIR---------TVDGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~---~~~~~~---------~~~~GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|...+..  +.+.|+|+.++.+... .+...   ...|+.         .....|.|.+++.+|+
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~--p~~~v~W~k~~~~~~~-~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~   86 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLI--PVGPIQWFRGAGPARE-LIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADA   86 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCC--SCCCEEEEESCSTTCE-EEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGC
T ss_pred             CCceEEecCCcEEEEEEccCcC--CCceEEEEECCCCCce-EEEEcCCCCcceeeeecccccccCceeEEEEccCccccC
Confidence            4678899999999999986541  2358999988654211 11110   011333         2233599999999999


Q ss_pred             eEEEEEeCCe
Q psy10772        347 GKYDCWLGNT  356 (378)
Q Consensus       347 G~Y~C~~~~~  356 (378)
                      |.|.|.+.+.
T Consensus        87 G~Y~C~a~n~   96 (327)
T 2wng_A           87 GTYYCVKFRK   96 (327)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEeecC
Confidence            9999998763

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.71  E-value=6.5e-05  Score=67.73  Aligned_cols=88  Identities=19%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------------eccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------------FRSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------------~~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.|.|+.+........+.            .....|+....+      -|.|.+|
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAF-SSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEeccccC-CCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3578889999999999875431 12479998864322111010            011234443321      2999999


Q ss_pred             cCCCCeEEEEEeCCe--ee---EEEeeeeccc
Q psy10772        342 EELDAGKYDCWLGNT--VL---CTHNLTVDAH  368 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~--~l---~~~~~~v~~~  368 (378)
                      +.+|+|.|.|.+.+.  ..   ....|+|...
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            999999999999875  11   1236777643

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.71  E-value=8.1e-05  Score=69.80  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=54.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC---CCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA---NQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La---~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|.....+...   .+.+.|+.+........+...       .++|+.....    -|.|.+++.+
T Consensus       166 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  245 (291)
T 2gki_A          166 PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAE  245 (291)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHH
Confidence            3467889999999999986443210   027999987422111111100       1334433222    3999999999


Q ss_pred             CCeEEEEEeCCeeeE----EEeeeecccccCCCCCCC
Q psy10772        345 DAGKYDCWLGNTVLC----THNLTVDAHSNVADAPTR  377 (378)
Q Consensus       345 DsG~Y~C~~~~~~l~----~~~~~v~~~~c~~~~~~~  377 (378)
                      |+|.|.|.+.+....    .-.|.|..+.=.-|++.+
T Consensus       246 DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~~~~~~~~  282 (291)
T 2gki_A          246 DLAVYYCKQSYYHMYTFGSGTKLEIKHHHHHGLVPRG  282 (291)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECC---------
T ss_pred             HCEEEEEEEccCCceEEcCCEEEEEEeeEcCCCceee
Confidence            999999999873222    224555555444555544

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.70  E-value=0.00017  Score=58.97  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=55.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec---C---ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD---G---GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~---~---GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|+|............+.|+.+...++...|-..       ..+|+....   .   -|.|.+++.+|
T Consensus         7 p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~D   86 (117)
T 1xed_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   86 (117)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHH
Confidence            3567899999999999975321000136899987543221112110       123443321   2   29999999999


Q ss_pred             CeEEEEEeCC---eeeEEEeeeeccc
Q psy10772        346 AGKYDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       346 sG~Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                      +|.|.|....   .+.-.=.++|.+|
T Consensus        87 sG~Y~C~v~~~~~~l~f~~~~~~~~~  112 (117)
T 1xed_A           87 SGRYKCGLGINSRGLSFDVSLEVLEH  112 (117)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CEEEEEEEEeCCCCeeEEEEEEEeee
Confidence            9999999986   4666677777765

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.70  E-value=4.8e-05  Score=68.06  Aligned_cols=75  Identities=21%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-------eccCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-------FRSDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-------~~~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|...+.+.   +.|.|+.+........|.       ...++++...      ..-|.|.+++.+|
T Consensus       134 p~~~~v~~G~~v~L~C~~~~~p~---~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  210 (238)
T 2p1y_A          134 PQSLTVWEGETAILNCSYENSAF---DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD  210 (238)
T ss_dssp             CSEEEEETTSCEEEEEECCCTTC---CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGG
T ss_pred             CceEEEeCCCeEEEEEEEecCCC---CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHH
Confidence            35577899999999999865433   589999875321111110       0123344432      1249999999999


Q ss_pred             CeEEEEEeCCe
Q psy10772        346 AGKYDCWLGNT  356 (378)
Q Consensus       346 sG~Y~C~~~~~  356 (378)
                      +|.|.|.+.|.
T Consensus       211 ~G~Y~C~a~n~  221 (238)
T 2p1y_A          211 SATYFCAAIDT  221 (238)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEeeC
Confidence            99999999863

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=97.70  E-value=0.00014  Score=61.59  Aligned_cols=96  Identities=16%  Similarity=0.111  Sum_probs=54.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|-. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   87 (139)
T 2d7t_H            9 AEVKKPGASVKVSCKASGY-TFTGNYMHWVRQAPGQGLEYMGWINPKSGDTNYAQKFQGRVTMTRDTSISTVYMEVRRLR   87 (139)
T ss_dssp             CEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEEeCC-cccCCEEEEEEECCCCCCEEEEEEEcCCCceeeCcccCCeEEEEEeCCCCEEEEEECcCC
Confidence            3578889999999998532 11223699998864333221211 1           123554432   2   29999999


Q ss_pred             CCCCeEEEEEeCCee----eEEEeeeecccccCCCCCCC
Q psy10772        343 ELDAGKYDCWLGNTV----LCTHNLTVDAHSNVADAPTR  377 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~~----l~~~~~~v~~~~c~~~~~~~  377 (378)
                      .+|+|.|.|...+..    -..-.|+|.+.+-..|.+.|
T Consensus        88 ~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~~~~~~~~~  126 (139)
T 2d7t_H           88 SDDTAVYYCATGWWGMDVWGQGTLVTVSSASEQKLISKE  126 (139)
T ss_dssp             GGGCEEEEEEECSSSCCEECCCEEEEECC----------
T ss_pred             HHHCEEEEEEEeeCCcCEECCCEEEEEecccCCCccccc
Confidence            999999999987521    12347788777666665543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=97.70  E-value=3.2e-05  Score=65.43  Aligned_cols=60  Identities=18%  Similarity=0.317  Sum_probs=44.8

Q ss_pred             EEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|.... ++.   +.++|+.++..     +..      ......|.|.+++.+|+|.|.|.+.|
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~-----~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n  155 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPL---VKVTFFQNGKS-----QKF------SHLDPTFSIPQANHSHSGDYHCTGNI  155 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCE---EEEEEEETTEE-----EEE------ESSCCEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceeecCCeEEEEEECCCCCCC---ceEEEEECCeE-----ccc------cCCCCeEEEEeccccCCEEEEEEEEe
Confidence            35678999999999842 322   47999987653     431      11245699999999999999999987

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=97.70  E-value=9.3e-05  Score=61.18  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee---c---CceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV---D---GGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~---~---~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+.+|+++.|.|...... .+.+.|.|+.+........+ +..++|+...   .   --|.|.+++.+|+|.|.|.
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~~-~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   84 (121)
T 2i24_N            7 PQRITKETGESLTINCVVRDSR-CVLSTGYWYRKPPGSRNEES-ISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCK   84 (121)
T ss_dssp             CSEEEEETTCCEEEEEEECSCC-CCEEEEEEEEECTTCSCCEE-ECSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcEEEEecCCcEEEEeEccCCC-CCCCEEEEEEeCCCCCceee-EecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEE
Confidence            3467889999999999985432 22247999987533221112 1233444321   1   1399999999999999998


Q ss_pred             eC
Q psy10772        353 LG  354 (378)
Q Consensus       353 ~~  354 (378)
                      +.
T Consensus        85 ~~   86 (121)
T 2i24_N           85 PE   86 (121)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.69  E-value=8.3e-05  Score=67.53  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|..... .++.+.+.|+.+........+...       ..+|+.....+    |.|.+|+.+|+|.
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSS-NIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTT-TTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEEcCCCcEEEEEecCCC-CCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            35788999999999998643 223458999986432211111100       12344333332    9999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus        89 Y~C~~~~   95 (256)
T 3ux9_B           89 YYCQVRD   95 (256)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999975

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.69  E-value=6.2e-05  Score=65.32  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=52.1

Q ss_pred             EEEEeCCeeeeeee-eccCCCCCCCCeEEEEecc-cCceeeEeecc-------CcceEe--ecCceEEeeecCCCCeEEE
Q psy10772        282 QTVTWGQSVHLSCF-VKLPASMANQPMSWYHYSK-DKGRYQIKFRS-------DKFIRT--VDGGLVIMAVEELDAGKYD  350 (378)
Q Consensus       282 ~~~~~G~s~~L~C~-~r~~~~La~~~v~W~~~~~-~~~~~~l~~~~-------~~~~~~--~~~GLlI~~v~~~DsG~Y~  350 (378)
                      ..+.+|+++.|.|. ..+.+   .|.++|+.++. +     |....       ..++..  ...-|.|.+++..|+|.|.
T Consensus       114 ~~~~~g~~~~l~C~~~~~~p---~~~i~W~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  185 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISM-----LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYY  185 (212)
T ss_dssp             SEEETTSCEEEEEECSCCBS---CCEEEEEETTEES-----BC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEE
T ss_pred             cccCCCCeEEEEEEcccCcC---CCEEEEEeCCccc-----ccccccccccccCceeEecCCCceEEEEecChhhCcEEE
Confidence            46788999999998 44433   36899999876 4     22100       011222  2445999999999999999


Q ss_pred             EEeCC---e--eeEEEeeeecc
Q psy10772        351 CWLGN---T--VLCTHNLTVDA  367 (378)
Q Consensus       351 C~~~~---~--~l~~~~~~v~~  367 (378)
                      |.+.|   .  .-....|+|.+
T Consensus       186 C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          186 CQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             EEEECSSSCCEECCCEEEEEES
T ss_pred             EEEccccCCccccceEEEEEEE
Confidence            99998   2  23445565554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.69  E-value=8.5e-05  Score=67.26  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC--CCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM--ANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L--a~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|...+.+..  ..+.|.|+.+........+..       ....|+.....    .|.|.+++.+|
T Consensus        45 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  124 (254)
T 2c1o_A           45 PLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAED  124 (254)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCccc
Confidence            456789999999999998655410  025799998643211100100       01234433222    49999999999


Q ss_pred             CeEEEEEeCCe
Q psy10772        346 AGKYDCWLGNT  356 (378)
Q Consensus       346 sG~Y~C~~~~~  356 (378)
                      +|.|.|.+.+.
T Consensus       125 ~G~Y~C~a~n~  135 (254)
T 2c1o_A          125 LGIYYCVQGSH  135 (254)
T ss_dssp             CSEEEEEECSS
T ss_pred             CEEEEEEEEcC
Confidence            99999999874

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.69  E-value=6.3e-05  Score=68.68  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc-------------CcceEeec-----CceEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS-------------DKFIRTVD-----GGLVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~-------------~~~~~~~~-----~GLlI~~  340 (378)
                      ...+.+.+|+++.|.|.....+   .+.|.|+.+....+...+....             +.+.....     .-|.|.+
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRN   85 (259)
T ss_dssp             --CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESS
T ss_pred             CceeEecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECC
Confidence            3567899999999999986544   3579998864322211111000             11222111     1299999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      |+.+|+|.|.|.+.+
T Consensus        86 v~~~DsG~Y~C~~~~  100 (259)
T 3omz_A           86 LIENDSGVYYCATWD  100 (259)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccCEEEEEEEee
Confidence            999999999999976

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.69  E-value=9.5e-05  Score=59.81  Aligned_cols=74  Identities=19%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c----------cCcceEeec-C---ceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R----------SDKFIRTVD-G---GLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~~-~---GLlI~~v~~~  344 (378)
                      ..+.+.+|+++.|.|......  ....|.|+.+...++...|-. .          -.+|+.... .   -|.|.+++.+
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~--~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~   86 (115)
T 2otu_A            9 SSASFSLGASAKLTCTLSSQH--STYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE   86 (115)
T ss_dssp             CCEECCTTCCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEECCCCCEEEEEEecCCC--CCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChh
Confidence            456788999999999986432  224799998753322211210 0          023544332 2   3999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|...+
T Consensus        87 Dsg~Y~C~~~~   97 (115)
T 2otu_A           87 DEAIYICGVGD   97 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEec
Confidence            99999999864

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.69  E-value=6.1e-05  Score=69.04  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+.+|+++.|.|....|..  .+.++|+.++..    .+.  .+.++. ....+|.|.+++..|+|.|.|.+.+   
T Consensus        97 ~~~~v~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~----~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  168 (292)
T 4dkd_C           97 QEVVVFEDQDALLPCLLTDPVL--EAGVSLVRVRGR----PLM--RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR  168 (292)
T ss_dssp             SEEEEETTSCEECCEEESSGGG--GSSEEEEEGGGC----CCC--SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTS
T ss_pred             CeEEEcCCCcEEEeeeCCCCCc--ceeEEEEecCCC----ccc--cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCC
Confidence            4577889999999999876431  137999987432    121  233333 3355699999999999999999986   


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       ..-....|.|..
T Consensus       169 ~~~s~~~~l~V~~  181 (292)
T 4dkd_C          169 KVMSISIRLKVQK  181 (292)
T ss_dssp             CEECCCEEEEEEC
T ss_pred             ceeEEEEEEEEeC
Confidence             222366777765

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=97.69  E-value=0.00012  Score=65.00  Aligned_cols=76  Identities=17%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-------------ccCcceEeecCc------eEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-------------RSDKFIRTVDGG------LVIM  339 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-------------~~~~~~~~~~~G------LlI~  339 (378)
                      ..+.+.+|+++.|.|.....+ ...+.|.|+.+....+...+- .             ...+|+....++      |.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFT-LSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             CCEEEcCCCCEEEEEEccccc-ccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            346788999999999986432 223579998865332211110 0             112455544333      9999


Q ss_pred             eecCCCCeEEEEEeCCe
Q psy10772        340 AVEELDAGKYDCWLGNT  356 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~~  356 (378)
                      +|+.+|+|.|.|.+.+.
T Consensus        87 ~v~~~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGD  103 (221)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             CCCHHHCEEEEEEEECC
Confidence            99999999999999764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.69  E-value=0.00013  Score=64.06  Aligned_cols=89  Identities=21%  Similarity=0.330  Sum_probs=55.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCC--CCCCCeEEEEeccc-----CceeeEe---eccCcceEeecC-------ceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPAS--MANQPMSWYHYSKD-----KGRYQIK---FRSDKFIRTVDG-------GLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~-----~~~~~l~---~~~~~~~~~~~~-------GLlI~~v  341 (378)
                      .+.+.+.+|+++.|.|...+.+.  ...+.|+|+.++..     .+.....   .....|.....+       .|.|.+|
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            45678899999999999643222  11237999886421     0000000   001123333222       5999999


Q ss_pred             cCCCCeEEEEEeCC--eeeEEEeeeecc
Q psy10772        342 EELDAGKYDCWLGN--TVLCTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~--~~l~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+  .......|.|.+
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~  115 (222)
T 3sbw_C           88 KLQDAGVYRCMISYGGADYKRITVKVNA  115 (222)
T ss_dssp             CGGGCEEEEEEEESSSEEEEEEEEEEEB
T ss_pred             ccccCeEEEEEEEeCCCceeEEEEEEEC
Confidence            99999999999986  445566777764

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.68  E-value=3.4e-05  Score=69.52  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=45.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce--EeecC--ceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RTVDG--GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~~~~--GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|....+    .+.+.|+.++..     +.. .....  .....  -|.|.+|+.+|+|.|.|.+.+
T Consensus        18 ~~v~~G~~vtL~C~~~~~----~~~~~W~k~g~~-----~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIRE----AYLTQLMIIKNS-----TYR-EIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             SEEETTCCEEEEECCCTT----CSEEEEEEEETT-----EEE-ECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCCEEEEEEcCCC----CCEEEEEECCCc-----ccc-cccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            367889999999998643    247999998765     321 11111  11122  599999999999999999987

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=97.68  E-value=2.3e-05  Score=75.02  Aligned_cols=63  Identities=29%  Similarity=0.469  Sum_probs=49.0

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC-CCCeEEEEEeCC
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGN  355 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~  355 (378)
                      .+|+++.|.|...+.+.   +.++|+.++.+     |....+.++...+..|+|.++.. .|+|.|.|.+.|
T Consensus        20 ~~g~~v~l~C~~~g~p~---~~v~W~k~g~~-----~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   83 (382)
T 1cs6_A           20 SAEEKVTLTCRARANPP---ATYRWKMNGTE-----LKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (382)
T ss_dssp             CSCCEEEECCEEEEESC---CEEEEEETTEE-----CCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCCCcEEEEEEecCCCC---CEEEEEECCEE-----CCcCCCccEEeeCCeEEEecccccccCEEEEEEEEc
Confidence            68999999999875433   58999998754     43223445666667799999997 999999999987

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=97.68  E-value=5.6e-05  Score=63.89  Aligned_cols=72  Identities=24%  Similarity=0.317  Sum_probs=50.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe-eeE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT-VLC  359 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~-~l~  359 (378)
                      .+.+.+|+++.|.|.....+.  .+.++|+.++.+     +.  .      ....|+|.+++.+|+|.|.|.+.+. .-.
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~--~~~~~W~~~g~~-----~~--~------~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~   77 (170)
T 3ry4_A           13 WINVLQEDSVTLTCQGARSPE--SDSIQWFHNGNL-----IP--T------HTQPSYRFKANNNDSGEYTCQTGQTSLSD   77 (170)
T ss_dssp             CSEEETTCEEEEEEESCCCSS--SSCEEEEETTEE-----CT--T------CCSSEEEEECCGGGCEEEEEEETTSBCCC
T ss_pred             CeEEECCCcEEEEEEecCCCC--cceEEEEECCeE-----cc--c------CccceEEEecccccCeEEEEEEeCCCceE
Confidence            346788999999999865431  247999987653     32  1      1356788999999999999999872 223


Q ss_pred             EEeeeecc
Q psy10772        360 THNLTVDA  367 (378)
Q Consensus       360 ~~~~~v~~  367 (378)
                      ...|.|..
T Consensus        78 ~~~l~v~~   85 (170)
T 3ry4_A           78 PVHLTVLF   85 (170)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEC
Confidence            34455543

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=97.68  E-value=0.00017  Score=60.37  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------ccCcceEee---cC---ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------RSDKFIRTV---DG---GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~~~~~~~~~---~~---GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|.......  ...+.|+.+...++...|-.        ...+|+...   ..   -|.|.+++.+
T Consensus        16 p~~v~v~~G~~vtL~C~~~~~~~--~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~   93 (134)
T 3bik_B           16 PAWLTVSEGANATFTCSLSNWSE--DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   93 (134)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCT--TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGG
T ss_pred             CCeEEEeCCCCEEEEEEeCCCCC--CcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChH
Confidence            45678999999999999864321  23699998854322211210        123455443   12   3999999999


Q ss_pred             CCeEEEEEeCCee-------eEEEeeeecccccCCCCCC
Q psy10772        345 DAGKYDCWLGNTV-------LCTHNLTVDAHSNVADAPT  376 (378)
Q Consensus       345 DsG~Y~C~~~~~~-------l~~~~~~v~~~~c~~~~~~  376 (378)
                      |+|.|.|...+..       -....|+|.+..-.+|+.+
T Consensus        94 Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~~~~P~~~  132 (134)
T 3bik_B           94 DSGIYLCGAISLHPKAKIEESPGAELVVTERILETSTRY  132 (134)
T ss_dssp             GCEEEEEEEEECSSSCEEEECCCEEEEEECCC-------
T ss_pred             HCEEEEEEEEeCCCCceEEEcCCEEEEEeCCCCCCCCcC
Confidence            9999999986421       2356888887776777654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.68  E-value=0.00011  Score=75.40  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             eeEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccCc---eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKG---RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~---~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|... +.+.   |.|+|++++....   .++.....+.+......-|.|.+++.+|+|.|.|.+.|
T Consensus       235 ~~~~v~~G~~v~L~C~~~~g~p~---p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N  311 (527)
T 3qs9_E          235 PQLFLKVGEPLWIRCKAVHVNHG---FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (527)
T ss_dssp             CEEEECTTSCEEEEEEEEESSSC---CCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETT
T ss_pred             CceEEeCCCeEEEEEEEccCCCC---eEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEe
Confidence            467788999999999985 4433   6899999876411   10010001111122223499999999999999999999


Q ss_pred             eeeEEEeeeecccc
Q psy10772        356 TVLCTHNLTVDAHS  369 (378)
Q Consensus       356 ~~l~~~~~~v~~~~  369 (378)
                      ..-++..|+|....
T Consensus       312 ~~~~~~~L~V~~~p  325 (527)
T 3qs9_E          312 HPSQSALVTIVEKG  325 (527)
T ss_dssp             EEEEEEEEEEC--C
T ss_pred             CCCceEEEEEEccC
Confidence            87777778776544

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=97.67  E-value=0.00011  Score=70.24  Aligned_cols=84  Identities=23%  Similarity=0.340  Sum_probs=58.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      +...+.+|+++.|.|...+.+.   |.++|+.++...... .....+.++.....-|.|.+++..|+|.|.|.+.|   .
T Consensus       220 ~~~~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  295 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQGFPA---PSFRWYKFIEGTTRK-QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG  295 (388)
T ss_dssp             CCEEEETTSCEEECCCCEEESC---CEEEEEEECTTSSCE-EECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CceEEeeCCcEEEEEECCCCCC---CEEEEEecCCCCccc-ccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCc
Confidence            3456788999999999865433   589999985431110 11123445555667799999999999999999987   4


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-....|.|..
T Consensus       296 ~~~~~~l~V~~  306 (388)
T 2v5m_A          296 ESVETVLTVTA  306 (388)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eeEEEEEEEeC
Confidence            44555666654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.67  E-value=7.3e-05  Score=71.69  Aligned_cols=79  Identities=29%  Similarity=0.459  Sum_probs=57.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++.+     +.  .+. ++.....-|.|.+++..|+|.|.|.+.|   
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~~-----~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (404)
T 3p3y_A          230 SSQMVLRGMDLLLECIASGVPT---PDIAWYKKGGD-----LP--SDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG  299 (404)
T ss_dssp             EEEEEETTSCEEEECCBCCSSC---CEEEEEETTBC-----CC--TTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CCceEecCCCEEEEEEECCCCC---CcEEEEECCEE-----CC--CCcccccccCceEEEccCCHhHCEEEEEEEEeCCC
Confidence            4577889999999998865433   58999998765     32  222 2233345699999999999999999987   


Q ss_pred             eeeEEEeeeeccc
Q psy10772        356 TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ~~l~~~~~~v~~~  368 (378)
                      ..-.+..|.|...
T Consensus       300 ~~~~~~~l~V~~~  312 (404)
T 3p3y_A          300 SIRHTISVRVKAA  312 (404)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             cEEEEEEEEEeCC
Confidence            4455666666543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.67  E-value=0.0001  Score=66.17  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeecC-----ceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVDG-----GLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~~-----GLlI~~v~~  343 (378)
                      .+.+.+.+|+++.|.|....    +.+.|.|+.+........+..          ...+|+....+     -|.|.+|+.
T Consensus         9 p~~v~v~~G~~v~L~C~~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~   84 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS----GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL   84 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT----TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             cceeeecCCCcEEEEEEeCC----CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCCh
Confidence            35678999999999998754    234899988543221111100          01134433322     299999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|+|.|.|.+.
T Consensus        85 ~D~G~Y~C~~~   95 (240)
T 3q5y_A           85 EDSAMYFCASS   95 (240)
T ss_dssp             GGCEEEEEEEE
T ss_pred             hHCEEEEEEEc
Confidence            99999999995

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.67  E-value=5.7e-05  Score=68.60  Aligned_cols=74  Identities=20%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-ee-----------ccCcceEeecC-c-----eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KF-----------RSDKFIRTVDG-G-----LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~-----------~~~~~~~~~~~-G-----LlI~~v~  342 (378)
                      ...+.+|+++.|.|...+.+. +.+.+.|+.+........+ ..           ...+|+....+ .     |.|.+++
T Consensus       143 ~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAASGFTF-SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEcCCCeEEEEEEEeCCcc-cccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            356888999999999865321 1357999987432221111 00           11224443322 2     9999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus       222 ~~DsG~Y~C~~~~  234 (256)
T 3ux9_B          222 AEDTAVYYCARYI  234 (256)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             hhhCEEEEEEEEc
Confidence            9999999999986

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.67  E-value=1.7e-05  Score=69.34  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=45.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|...++.    +.+.|+.++...... ..   ..........|.|.+++.+|+|.|.|.+.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~-~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTLEA----REYRLDKEESPAPWD-RQ---NPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTSCSCSE-EE---CCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCCCcEEEEeeCCCCC----CEEEEEECCCCCccc-cc---ccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            678899999999986542    479999887652110 00   000001234599999999999999999876

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.66  E-value=5.7e-05  Score=67.14  Aligned_cols=76  Identities=14%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .....+..|+++.|.|...+.+.   |.++|+.++..     +.  .+     ...-|.|.+++.+|+|.|.|.+.|   
T Consensus       125 ~~~~~v~~G~~v~L~C~~~g~p~---~~v~W~~~~~~-----~~--~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g  189 (218)
T 3k0w_A          125 PTSQKLMPGSTLVLQCVAVGSPI---PHYQWFKNELP-----LT--HE-----TKKLYMVPYVDLEHQGTYWCHVYNDRD  189 (218)
T ss_dssp             CCCEEECTTCCEEEECEEEBSSC---CEEEEEETTEE-----CT--TC-----CSSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CCceeecCCCcEEEEEEecccCC---CeEEEEECCEE-----CC--CC-----CCCEEEEeecChhcCEEEEEEEEcCCC
Confidence            34567888999999999865543   68999987653     32  22     124599999999999999999998   


Q ss_pred             -eeeEEEeeeecccc
Q psy10772        356 -TVLCTHNLTVDAHS  369 (378)
Q Consensus       356 -~~l~~~~~~v~~~~  369 (378)
                       ..-....|.|++..
T Consensus       190 ~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          190 SQDSKKVEIIIDELN  204 (218)
T ss_dssp             EEECCCEEEEECC--
T ss_pred             CceeeeEEEEEeCCc
Confidence             24556777777644

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.66  E-value=3.1e-05  Score=68.06  Aligned_cols=69  Identities=20%  Similarity=0.379  Sum_probs=48.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec--cCcceEeecCce----EEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR--SDKFIRTVDGGL----VIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~--~~~~~~~~~~GL----lI~~v~~~DsG~Y~C~  352 (378)
                      ...+.+.+|+++.|.|...+.+.   +.++|+.++.+     +...  ...++...++++    .|.+++..|+|.|.|.
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~p~---~~v~W~~~g~~-----~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A           16 PTDLVVKKNEPATLNCKVEGKPE---PTIEWFKDGEP-----VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEECTTSCEEECCEEECSSC---CEEEEEETTEE-----CCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEcCCCCC---CeEEEEECCcC-----ccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            45578889999999999875433   57999987654     3211  122333333444    5788999999999999


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +.+
T Consensus        88 ~~n   90 (217)
T 2vr9_A           88 AKN   90 (217)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            986

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=97.65  E-value=0.00017  Score=64.89  Aligned_cols=75  Identities=20%  Similarity=0.191  Sum_probs=49.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecCc------eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~G------LlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......|.|+.+...++...+- .           ...+|+....++      |.|.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGY-NFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ   87 (226)
T ss_dssp             CEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred             CEEEecCCCEEEEEEecCc-cccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            4778899999999998532 2223479999875432221120 0           112355443333      9999999


Q ss_pred             CCCCeEEEEEeCCe
Q psy10772        343 ELDAGKYDCWLGNT  356 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~  356 (378)
                      .+|+|.|.|...+.
T Consensus        88 ~~DsG~Y~C~~~~~  101 (226)
T 3mlr_H           88 ASDTGKYFCTRLYL  101 (226)
T ss_dssp             GGGCEEEEEEEEEE
T ss_pred             cccCEEEEEeEccC
Confidence            99999999998653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.65  E-value=9.9e-05  Score=67.46  Aligned_cols=74  Identities=20%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------ccCcceEee---cC---ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------RSDKFIRTV---DG---GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~~~~~~~~~---~~---GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+........+..        ..++|+...   ..   -|.|.+|+.+
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   86 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRS   86 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             CceEEecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcc
Confidence            4568899999999999986553   36899988643221111110        113343331   12   2999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|.+.+
T Consensus        87 DsG~Y~C~~~~   97 (256)
T 3tf7_C           87 DSAVYFCAVSA   97 (256)
T ss_dssp             GCSEEEEEEEC
T ss_pred             cCEEEEEEEec
Confidence            99999999976

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.65  E-value=0.00015  Score=64.23  Aligned_cols=86  Identities=20%  Similarity=0.152  Sum_probs=54.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-------------ccCcceEeec------CceEEee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-------------RSDKFIRTVD------GGLVIMA  340 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-------------~~~~~~~~~~------~GLlI~~  340 (378)
                      .+.+.+|+++.|.|.....+ ...+.|.|+.+........+. .             ...+|+....      ..|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFT-FTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             ceeEcCCCEEEEEEEecCcc-CCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            46788999999999987532 112479998875322111110 0             0123544432      1599999


Q ss_pred             ecCCCCeEEEEEeCCee------e--EEEeeeecc
Q psy10772        341 VEELDAGKYDCWLGNTV------L--CTHNLTVDA  367 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~~~------l--~~~~~~v~~  367 (378)
                      |+.+|+|.|.|.+.+..      .  ....|+|..
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            99999999999998743      1  234666665

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.65  E-value=1.4e-05  Score=74.45  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=53.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceE-EeeecCCCCeEEEEEeCC---e
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLV-IMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLl-I~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+..|+++.|.|...+.+.   | .++|++++.+     +.   +. ....++.|+ |.+++.+|+|.|.|.+.|   .
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~---p~~v~W~k~~~~-----~~---~~-~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~  289 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPP---PFKSVWSRLDGQ-----WP---DG-LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQ  289 (308)
T ss_dssp             CEETTCCSCEEECCEEEESC---EEEEECCBSSSC-----CC---SS-CBCSTTEEECCSCCCSCCCSEEEEEEEETTEE
T ss_pred             eeeeccccEEEEEEEecCCC---CcEEEEEECCeE-----CC---Cc-EEEcCCeEEEECCCChhhCEEEEEEEEeCCCc
Confidence            34567899999999876543   3 5899987754     32   22 223344554 678999999999999987   5


Q ss_pred             eeEEEeeeeccc
Q psy10772        357 VLCTHNLTVDAH  368 (378)
Q Consensus       357 ~l~~~~~~v~~~  368 (378)
                      .-++..|.|.+.
T Consensus       290 ~~~~~~l~V~~~  301 (308)
T 4fom_A          290 RSDQKVIYISDP  301 (308)
T ss_dssp             EEEEEECCEECC
T ss_pred             EEEEEEEEEEcC
Confidence            677778888653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.65  E-value=0.00011  Score=65.63  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=50.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-----eccCcceEeecC-------ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-----FRSDKFIRTVDG-------GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-----~~~~~~~~~~~~-------GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|.|......    +.|.|+.+....+...|.     ....+|+....+       -|.|.+++.+|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            8 PSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             CCeEEEccCCcEEEEEEEeCCC----eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            3567899999999999986432    269999875322211120     012345444322       499999999999


Q ss_pred             eEEEEEeCCe
Q psy10772        347 GKYDCWLGNT  356 (378)
Q Consensus       347 G~Y~C~~~~~  356 (378)
                      |.|.|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (207)
T 1ypz_E           84 GTYFCAADTW   93 (207)
T ss_dssp             EEEEEEEECB
T ss_pred             EEEEEEEecC
Confidence            9999999764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.65  E-value=6e-05  Score=65.18  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ....+.+|+++.|.|...+.+.   | .++|+.++..     +.  ..... ....-|.|.+++  |+|.|.|.+.|   
T Consensus       114 ~~~~~~~g~~~~l~C~~~g~p~---p~~v~W~~~~~~-----~~--~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g  180 (195)
T 2c5d_C          114 EDRTVAANTPFNLSCQAQGPPE---PVDLLWLQDAVP-----LA--TAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKG  180 (195)
T ss_dssp             CCEEECTTCCEEEEEEEECSSC---CCEEEEEESSCB-----SS--SSTTS-SCCEEEEECCCS--SCEEEEEEEEETTE
T ss_pred             CcEEEcCCCEEEEEeECCCCCC---CCEEEEEECCEe-----cc--CCCCc-CCCCeEEEcccc--cCceEEEEEEcCCC
Confidence            3467888999999999875543   5 7999998764     32  22221 233448888877  89999999987   


Q ss_pred             eee-EEEeeee
Q psy10772        356 TVL-CTHNLTV  365 (378)
Q Consensus       356 ~~l-~~~~~~v  365 (378)
                      ... ++..|+|
T Consensus       181 ~~~s~~~~l~V  191 (195)
T 2c5d_C          181 VTTSRTATITV  191 (195)
T ss_dssp             EEECCCEEEEE
T ss_pred             ceEEEEEEEEE
Confidence            333 5666666

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=97.65  E-value=7.8e-05  Score=59.63  Aligned_cols=72  Identities=15%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             eeEEEEeCCeeeeeee-eccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee--c-C---ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCF-VKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV--D-G---GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~-~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~--~-~---GLlI~~v~~~D  345 (378)
                      +.+.+.+|+++.|.|. ....+.  .+.+.|+.+..  +...|-..       ..+|+...  . .   -|.|.+++.+|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~--~~~v~W~r~~~--~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   83 (109)
T 1pew_A            8 HSVSESPGKTVTISCTRSSGNIA--SNYVQWYQQRS--APITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   83 (109)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGG--GSCCEEEEC-C--CCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEcCCCCEEEEEEeCCCCCC--CccEEEEEECC--CCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhh
Confidence            4678899999999999 643321  24799998762  11112100       12344433  1 1   39999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|.+.+
T Consensus        84 sG~Y~C~~~~   93 (109)
T 1pew_A           84 EADYYCQSYD   93 (109)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999865

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.64  E-value=6.7e-05  Score=75.49  Aligned_cols=79  Identities=14%  Similarity=0.159  Sum_probs=56.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccCceeeEeeccCcceEeec--------CceEEeeecCCCCeEEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDKGRYQIKFRSDKFIRTVD--------GGLVIMAVEELDAGKYD  350 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~~~~~l~~~~~~~~~~~~--------~GLlI~~v~~~DsG~Y~  350 (378)
                      ..+.+.+|+++.|.|...+.+.   |. ++|+.++.+     +.. ..+++....        .-|.|.+++.+|+|.|.
T Consensus       321 ~~~~v~~G~~v~l~C~~~g~P~---p~~v~W~k~g~~-----~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  391 (524)
T 2ec8_A          321 TTVFVNDGENVDLIVEYEAFPK---PEHQQWIYMNRT-----FTD-KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT  391 (524)
T ss_dssp             SEEEECTTCCEEEEEEEEEESC---CCEEEEESSSCB-----CSS-SBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEE
T ss_pred             ceEEEcCCCcEEEEEEEeecCC---CcEEEEEECCee-----ccC-CccceeEEccCCCceeEEEEEEeecCcccCeEEE
Confidence            4678889999999999876544   57 999998765     321 111223222        24999999999999999


Q ss_pred             EEeCC---eeeEEEeeeecc
Q psy10772        351 CWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       351 C~~~~---~~l~~~~~~v~~  367 (378)
                      |.+.|   ..-++..|.|..
T Consensus       392 C~a~N~~g~~~~~~~l~V~~  411 (524)
T 2ec8_A          392 FLVSNSDVNAAIAFNVYVNT  411 (524)
T ss_dssp             EEEECSSCEEEEEEEEEECE
T ss_pred             EEEEecCceEEEEEEEEEec
Confidence            99988   455666676654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.64  E-value=4.3e-05  Score=66.33  Aligned_cols=56  Identities=23%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|...++    .+.++|+.++..             .......|.|.+++.+|+|.|.|.+.|
T Consensus        18 ~v~~G~~v~L~C~~~~~----~~~~~W~k~g~~-------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPPG----VDLYRLEKLSSS-------------RYQDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             EEETTCCEEEEEECSTT----CSEEEEEETTTC-------------CEESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             cccCCCcEEEEEeCCCC----CCEEEEEECCcc-------------ccCcccEEEECcCChhhCceEEEEEEc
Confidence            67899999999998653    247999887643             112345699999999999999999976

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=97.64  E-value=0.00015  Score=58.69  Aligned_cols=74  Identities=20%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....|.|+.+...++...|-. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (117)
T 2yc1_A            9 GGLVQPGGSLRLSCTGSGFT-FDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCeEEEEEEecCcc-cCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCC
Confidence            46788999999999986321 1224799998754332211210 0           123554432   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (117)
T 2yc1_A           88 AEDTAVYYCARGG  100 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.64  E-value=8e-05  Score=65.70  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             eeEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      ..+.+.+|+++.|.|.. ..++  +.+.|.|+.+........+..       ...+|+.....    .|.|.+++.+|+|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            8 PSVSAAPGQKVTISCSGSSSNI--GNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             SEEEECTTCCEEEEEECCTTTG--GGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CcEEecCCCeEEEEEEeecCCC--CCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            45788999999999994 3332  124799998653211100100       01234433222    3999999999999


Q ss_pred             EEEEEeCCeee-----EEEeeeec
Q psy10772        348 KYDCWLGNTVL-----CTHNLTVD  366 (378)
Q Consensus       348 ~Y~C~~~~~~l-----~~~~~~v~  366 (378)
                      .|.|.+.+..-     ..-.|+|.
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~  109 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIK  109 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEEC
T ss_pred             EEEEEEEeCCCcceECCCEEEEEc
Confidence            99999987431     23456664

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.64  E-value=6.1e-05  Score=68.92  Aligned_cols=84  Identities=19%  Similarity=0.139  Sum_probs=55.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      ...+.+|+++.|.|.....  -+.+.++|+.++..... ...............-|.|.+++..|+|.|.|.+.|   ..
T Consensus       195 ~~~~~~g~~~~l~C~~~~~--~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  271 (289)
T 3ejj_X          195 KLVRIRGEAAQIVCSATNA--EVGFNVILKRGDTKLEI-PLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR  271 (289)
T ss_dssp             SEECCSSSCEEEEEEEEES--SSCCEEEEEETTEECCC-CEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             ceEEEeCCcEEEEEEeCCC--CCceEEEEEECCEEeec-cCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc
Confidence            4455789999999999752  12358999998754110 000000112223345699999999999999999988   66


Q ss_pred             eEEEeeeecc
Q psy10772        358 LCTHNLTVDA  367 (378)
Q Consensus       358 l~~~~~~v~~  367 (378)
                      -++-.|.|+.
T Consensus       272 ~~s~~L~~~~  281 (289)
T 3ejj_X          272 TATMNFQVVE  281 (289)
T ss_dssp             EEEEEEECC-
T ss_pred             cccEEEEEEe
Confidence            6776776654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=97.64  E-value=0.00021  Score=63.52  Aligned_cols=87  Identities=18%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeec---C---ceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~---~---GLlI~~v~  342 (378)
                      ..+.+.+|+++.|.|.....+ ...+.|.|+.+....+...|..           ...+|+....   .   -|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFP-LTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSC-TTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCeeecCCCcEEEEEEECCCc-CCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            346788999999999986432 1235799988743222111110           0123544331   1   49999999


Q ss_pred             CCCCeEEEEEeCCee-----e-EEEeeeecc
Q psy10772        343 ELDAGKYDCWLGNTV-----L-CTHNLTVDA  367 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~~-----l-~~~~~~v~~  367 (378)
                      .+|+|.|.|.+.+..     . ....|+|..
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            999999999998742     1 235677764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.63  E-value=3.7e-05  Score=71.44  Aligned_cols=74  Identities=16%  Similarity=0.323  Sum_probs=48.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEEeCC---e
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      +.+.+|+++.|.|...+.+.   |.++|+.++.+     |.  .+.++.  ...  |.|.+  .+|+|.|.|.+.|   .
T Consensus       215 ~~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~-----l~--~~~~~~--~~~~~L~i~~--~~d~G~Y~C~a~N~~G~  280 (304)
T 2yd9_A          215 HEIMPGGNVNITCVAVGSPM---PYVKWMQGAED-----LT--PEDDMP--VGRNVLELTD--VKDSANYTCVAMSSLGV  280 (304)
T ss_dssp             BCCCTTCCEEEEEEEEEESC---CEEEEEETTEE-----CS--CSSSCC--BSEEEEEECS--CCSCEEEEEEEEETTEE
T ss_pred             eEEcCCCeEEEEEEEeeeCC---CEEEEEECCEE-----CC--Cccccc--CCcEEEEEcc--cccCEEEEEEEEeCCCc
Confidence            45678999999999875544   58999998754     42  222221  223  44444  4799999999987   5


Q ss_pred             eeEEEeeeecccc
Q psy10772        357 VLCTHNLTVDAHS  369 (378)
Q Consensus       357 ~l~~~~~~v~~~~  369 (378)
                      .-++..|.|.+..
T Consensus       281 ~~~~~~l~V~~~~  293 (304)
T 2yd9_A          281 IEAVAQITVKSLP  293 (304)
T ss_dssp             EEEEEEEC-----
T ss_pred             EEEEEEEEEecCc
Confidence            6677777776543

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=97.63  E-value=0.00012  Score=59.53  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|+|..... .+....|.|+.+...++...|- ..           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (120)
T 1n4x_H            9 PELKKPGETVKISCKATNY-AFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLK   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCeEEEEEEecCc-ccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            4678899999999998532 1122479999876433322121 00           123554432   1   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~DsG~Y~C~~~~  100 (120)
T 1n4x_H           88 NEDTATYFCVRDR  100 (120)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999875

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.63  E-value=2.1e-05  Score=68.84  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=44.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|...+++    +.+.|+.++...... .   ...........|.|.+++.+|+|.|.|.+.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~----~~~~W~k~g~~~~~~-~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEA----QEYRLVKEGSPEPWD-T---QNPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTCSSCSE-E---ECCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cccCCCeEEEEEeCCCCC----cEEEEEECCCCCCcc-c---ccccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            678999999999986442    279999887642100 0   0001112234599999999999999999965

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.63  E-value=0.00018  Score=64.26  Aligned_cols=86  Identities=23%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|.....+ +..+.|.|+.+...++...|..            ...+|+....+      -|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFD-FSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CeEecCCCcEEEEEEecCcc-CCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            46788999999999986432 1124799988753222111210            01245544322      49999999


Q ss_pred             CCCCeEEEEEeCCee------eEEEeeeecc
Q psy10772        343 ELDAGKYDCWLGNTV------LCTHNLTVDA  367 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~~------l~~~~~~v~~  367 (378)
                      .+|+|.|.|.+.+..      -....|+|..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            999999999987631      1234677764

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.63  E-value=3.7e-05  Score=67.00  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             eEEEEeCCeeeeeeeeccCC-CCCCCCeEEEEecccCceeeEee----------ccCcceEe---ecCceEEeeecCCCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPA-SMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRT---VDGGLVIMAVEELDA  346 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~-~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~---~~~GLlI~~v~~~Ds  346 (378)
                      .+.+..|+++.|.|....+. ..+.+.+.|..++..     +..          +-..|...   ...-|.|.+|+.+|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~-----i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~   77 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM-----VLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE   77 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE-----EEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGC
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcE-----EEEEeCCceeecCcccceeEEccCCCcEEEEecccchhC
Confidence            46788999999999974321 123347889876543     210          01123222   123499999999999


Q ss_pred             eEEEEEeCCee--------eEEEeeeeccc
Q psy10772        347 GKYDCWLGNTV--------LCTHNLTVDAH  368 (378)
Q Consensus       347 G~Y~C~~~~~~--------l~~~~~~v~~~  368 (378)
                      |.|.|.+.+..        -+...|.|...
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           78 GTYECVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEEEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCccccccccEEEEEEcCC
Confidence            99999998721        35677777653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=97.62  E-value=0.00018  Score=65.76  Aligned_cols=73  Identities=22%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------c----CcceEeec--C---ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------S----DKFIRTVD--G---GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~----~~~~~~~~--~---GLlI~~v~  342 (378)
                      ...+.+.+|+++.|.|....    +.+.|.|+.+........+.. .      .    ++|+....  .   -|.|.+|+
T Consensus        33 p~~v~v~~G~~v~L~C~~~~----~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (268)
T 3pl6_D           33 PSNKVTEKGKYVELRCDPIS----GHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE  108 (268)
T ss_dssp             CSEEEEETTCCEEEEEBCBT----TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred             CCEEEecCCCCEEEEEEeCC----CCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence            45678999999999999752    235799988542211111100 0      0    14444332  2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus       109 ~~D~G~Y~C~~~~  121 (268)
T 3pl6_D          109 RGDSAVYLCATSA  121 (268)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccCEEEEEEEec
Confidence            9999999999985

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=97.62  E-value=0.00012  Score=61.71  Aligned_cols=76  Identities=20%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|.......-..+.|.|+.+...+....|-.       ...+|+.....    -|.|.+|+.+|+|.|
T Consensus        14 ~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~DsG~Y   93 (135)
T 1p4b_L           14 ALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY   93 (135)
T ss_dssp             EEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             cEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHCEEE
Confidence            3889999999999998643210124689998754322111210       01234443322    399999999999999


Q ss_pred             EEEeCCe
Q psy10772        350 DCWLGNT  356 (378)
Q Consensus       350 ~C~~~~~  356 (378)
                      .|...+.
T Consensus        94 ~C~~~~~  100 (135)
T 1p4b_L           94 FCALWYS  100 (135)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998763

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.62  E-value=0.00017  Score=63.65  Aligned_cols=87  Identities=21%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.|.|+.+...+....+. .           ...+|+....      .-|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMF-TNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEEeCccc-ccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            3467889999999999874321 12579999874221111010 0           0123444332      24999999


Q ss_pred             cCCCCeEEEEEeCCee-----e--EEEeeeecc
Q psy10772        342 EELDAGKYDCWLGNTV-----L--CTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~-----l--~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+..     .  ....|+|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            9999999999998742     1  244667765

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.62  E-value=0.00012  Score=67.59  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC---CCCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM---ANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L---a~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|.....+..   ..+.|.|+.+........|..       ..+.|+....    ..|.|.+|+.+
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            456789999999999998654310   024799998742211111110       0123444332    14999999999


Q ss_pred             CCeEEEEEeCCee----eEEEeeeeccc
Q psy10772        345 DAGKYDCWLGNTV----LCTHNLTVDAH  368 (378)
Q Consensus       345 DsG~Y~C~~~~~~----l~~~~~~v~~~  368 (378)
                      |+|.|.|.+.+..    -....|+|...
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             HCEEEEEEEecCCccEecCCEEEEEEcC
Confidence            9999999998742    12346777543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.62  E-value=0.00012  Score=62.64  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCeeeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCT  360 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~l~~  360 (378)
                      ...+.+|+++.|.|...+.+. +...++|+.++.+     |.  .+..  ....++++.. +..|+|.|.|.+.+.....
T Consensus         7 ~~~v~~G~~v~l~C~~~~~~~-p~~~~~W~k~~~~-----l~--~~~~--~~~~~~l~i~-~~~d~G~Y~C~~~n~~~~~   75 (184)
T 3b5h_A            7 TTVEDLGSKILLTCSLNDSAT-EVTGHRWLKGGVV-----LK--EDAL--PGQKTEFKVD-SDDQWGEYSCVFLPEPMGT   75 (184)
T ss_dssp             EEEEEETTEEEEEEEEESCSS-CCCEEEEESSSEE-----EE--CTTC--CCSEEEEEEC-GGGCCEEEEEEEESTTSCE
T ss_pred             EEEEecCCCEEEEEECCCCCC-CceEEEEEeCCEE-----ee--cccc--cCCcEEEEEe-chhhCeEEEEEEECCcCcE
Confidence            456788999999999764433 1227899987643     53  2221  1123344444 6899999999999866677


Q ss_pred             Eeeeeccc
Q psy10772        361 HNLTVDAH  368 (378)
Q Consensus       361 ~~~~v~~~  368 (378)
                      ..|+|...
T Consensus        76 ~~l~V~~~   83 (184)
T 3b5h_A           76 ANIQLHGP   83 (184)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEecC
Confidence            77877643

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=97.62  E-value=0.00012  Score=60.73  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-------cCcceEeec------CceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-------SDKFIRTVD------GGLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-------~~~~~~~~~------~GLlI~~v~~~  344 (378)
                      .+.+.+.+|+++.|.|......  ....+.|+.+...++...|-. .       ..+|+....      --|.|.+++.+
T Consensus         8 P~~~~v~~G~~vtL~C~~s~~~--~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   85 (129)
T 3rrq_A            8 PALLVVTEGDNATFTCSFSNTS--ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRN   85 (129)
T ss_dssp             CSEEEEETTSCEEEEEECCCCC---CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCEEEEeCCCCEEEEeEecCCC--CCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChh
Confidence            3567889999999999986432  123689988754322211211 0       123554431      13999999999


Q ss_pred             CCeEEEEEeCCe---e----eEEEeeeecccccCCC
Q psy10772        345 DAGKYDCWLGNT---V----LCTHNLTVDAHSNVAD  373 (378)
Q Consensus       345 DsG~Y~C~~~~~---~----l~~~~~~v~~~~c~~~  373 (378)
                      |+|.|.|...+.   .    -+.-.|+|-+..=.+|
T Consensus        86 Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~~~p  121 (129)
T 3rrq_A           86 DSGTYLCGAISLAPKLQIKESLRAELRVTERRAEVP  121 (129)
T ss_dssp             GCEEEEEEEEECGGGCEEEECCCEEEEEECCCC---
T ss_pred             HCEEEEEEEEecCCCceeeEeceEEEEEecCccccC
Confidence            999999998751   1    2446777766543333

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.62  E-value=4e-05  Score=68.40  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=37.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+.   +.|.|+.+........+..       ...+|+.....    -|.|.+++.+|+|
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  106 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDID---DDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVA  106 (233)
T ss_dssp             CSBC-------CCEEEEEEEEES---SCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCS
T ss_pred             CCeEEEecCCCEEEEEecCCcCC---CeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCE
Confidence            34567889999999999865543   4799988753211110110       01223322212    4999999999999


Q ss_pred             EEEEEeCCe
Q psy10772        348 KYDCWLGNT  356 (378)
Q Consensus       348 ~Y~C~~~~~  356 (378)
                      .|.|.+.+.
T Consensus       107 ~Y~C~~~~~  115 (233)
T 3bqu_C          107 DYYCLQSDN  115 (233)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEecC
Confidence            999999873

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.62  E-value=0.00015  Score=66.04  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cCc---eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DGG---LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~G---LlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|.....+.   +.|.|+.+........+..       ...+|+... ..+   |.|.+|+.+|+|.
T Consensus       146 ~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  222 (256)
T 3umt_A          146 SSLSASLGERVSITCRASQDIG---SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVD  222 (256)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred             CeEEEECCCCEEEEEEEecCCC---cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEE
Confidence            4577889999999999865432   4899988643221110100       012333322 222   9999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+.+
T Consensus       223 Y~C~~~~  229 (256)
T 3umt_A          223 YYCLQYA  229 (256)
T ss_dssp             EEEEECS
T ss_pred             EEEEEee
Confidence            9999987

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=97.61  E-value=0.00019  Score=60.57  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEe-cccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHY-SKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~-~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+.+.+|+++.|.|...+.    ...+.|+.+ ...++...| +...+|+.....    -|.|.+++.+|+|.|.|.+
T Consensus        25 p~~~~v~~G~svtL~C~~s~~----~~~v~Wyrq~~~g~~~~~l-~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   99 (134)
T 3kg5_A           25 PRFIARKRGFTVKMHCYMNSA----SGNVSWLWKQEMDENPQQL-KLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ   99 (134)
T ss_dssp             CSEEEEETTCCEEEEEECCCT----TCCCEEEEESSSSSCCEEC-CCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEECCC----CceEEEEEECCCCCCcEEE-EEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEE
Confidence            356789999999999998543    147899988 332222112 112334443222    2999999999999999998


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .+
T Consensus       100 ~~  101 (134)
T 3kg5_A          100 KC  101 (134)
T ss_dssp             EC
T ss_pred             Ec
Confidence            65

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=97.61  E-value=0.00022  Score=58.65  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec----------cCcceEee--cC---ceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR----------SDKFIRTV--DG---GLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~----------~~~~~~~~--~~---GLlI~~v~~  343 (378)
                      ...+.+.+|+++.|.|.....    ...|.|+.+....+..-|-..          ..+|+...  ..   -|.|.+|+.
T Consensus         8 p~~v~v~~G~~vtL~C~~~~~----~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~   83 (121)
T 2oi9_C            8 PRNKVAVTGEKVTLSCNQTNN----HNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATP   83 (121)
T ss_dssp             CSEEEEETTCCEEEEEEESSC----CSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCCG
T ss_pred             CCeEEecCCCcEEEEEEecCC----CCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCCH
Confidence            356789999999999996422    247999987543222112110          12354433  22   399999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|...+
T Consensus        84 ~DsG~Y~C~~~~   95 (121)
T 2oi9_C           84 SQTSVYFCASGG   95 (121)
T ss_dssp             GGCEEEEEEEES
T ss_pred             HHCEEEEEEEcc
Confidence            999999999875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.61  E-value=8.4e-06  Score=76.67  Aligned_cols=80  Identities=21%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe--
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT--  356 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~--  356 (378)
                      .+.+.+.+|+++.|.|......  +.+.++|+.++.+     |.  .+.++...+..|.|.+++.+|+|.|.|.+.+.  
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~--p~~~v~W~k~g~~-----~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~   85 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGG--PMGPTVWVKDGTG-----LV--PSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQR   85 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCC--CCcceEEEECCee-----CC--CcccEEeccceEEEeecccccCEEEEEEEEeCCe
Confidence            4567888999999999986432  2257999998764     43  44555556677999999999999999999874  


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      ......|.|..
T Consensus        86 ~~~~~~l~V~~   96 (334)
T 1ry7_B           86 VLCHFSVRVTD   96 (334)
T ss_dssp             -----------
T ss_pred             EEEEEEEEEec
Confidence            34455565554

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=97.60  E-value=0.00018  Score=64.35  Aligned_cols=87  Identities=18%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+ ...+.|.|+.+....+...+..            ...+|+....      --|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFT-FSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEcCCCcEEEEEEecCcc-cCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            356788999999999986432 1124799998753222111210            0124554432      14999999


Q ss_pred             cCCCCeEEEEEeCCee-------e--EEEeeeecc
Q psy10772        342 EELDAGKYDCWLGNTV-------L--CTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~-------l--~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+..       .  ....|+|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEcc
Confidence            9999999999997642       1  233677764

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=97.60  E-value=0.00013  Score=59.16  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeec---C---ceEEeeecCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVD---G---GLVIMAVEEL  344 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~---~---GLlI~~v~~~  344 (378)
                      +.+.+|+++.|+|...... .....|.|+.+...++...|- ..          ..+|+....   .   -|.|.+++.+
T Consensus        10 ~~~~~G~~vtL~C~~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   88 (116)
T 1a2y_B           10 GLVAPSQSLSITCTVSGFS-LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSC-TTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEeCCCcEEEEEEEcCCC-cCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHH
Confidence            5788899999999986332 122479999875432221121 11          123554432   2   3999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|...+
T Consensus        89 Dsg~Y~C~~~~   99 (116)
T 1a2y_B           89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             HCEEEEEEEec
Confidence            99999999875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.60  E-value=8e-05  Score=71.55  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=55.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+.+|+++.|.|...+.+.   +.++|+.++..     +.. .+.++. ....-|.|.+++..|+|.|.|.+.|   
T Consensus       229 ~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~-----~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (403)
T 3laf_A          229 SNVIAIEGKDAVLECCVSGYPP---PSFTWLRGEEV-----IQL-RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE  299 (403)
T ss_dssp             CCEEEETTSCEEECCEEEEESC---CEEEEEETTEE-----CCC-SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CceEecCCCcEEEEEEcCCCCC---CeEEEEECCee-----ccC-CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC
Confidence            3467889999999999875433   58999987653     321 222333 3344599999999999999999976   


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      ..-.+..|.|..
T Consensus       300 ~~~~~~~l~V~~  311 (403)
T 3laf_A          300 NISASAELTVLV  311 (403)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             ceEEEEEEEEEC
Confidence            445556666644

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.60  E-value=0.00017  Score=63.92  Aligned_cols=75  Identities=16%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      +.+.+|+++.|.|...+.+.   |.+.|..+...    .+    .+.....  ...|.|.+|+.+|+|.|.|.+.|   .
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~---p~i~W~~~~~~----~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   79 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCES---PFFSWRTQIDS----PL----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSS---CEEEEEETTCC----CC----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EEEcCCCcEEEEEeecCCCC---CeEEEECCCCC----Cc----cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence            34458999999999875443   57999763211    01    1111111  12399999999999999999987   3


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-....|+|..
T Consensus        80 ~~~~~~l~V~~   90 (202)
T 1vca_A           80 LEKGIQVEIYS   90 (202)
T ss_dssp             EEEEEEEEEEB
T ss_pred             EeeEEEEEEEe
Confidence            34456677754

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.59  E-value=4e-05  Score=66.79  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|....+    .+.+.|+.++..     +...... .......-|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYG----AVEYQLHFEGSL-----FAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             EEETTCCEEEEEECCTT----CCEEEEEETTEE-----EEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCCCCEEEEEecCCC----CCEEEEEECCCc-----ccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            67889999999997532    236899877653     2210111 1112234599999999999999999865

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=97.59  E-value=0.00017  Score=64.60  Aligned_cols=76  Identities=18%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+ ...+.|.|+.+...++...|..            ...+|+....      .-|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFR-ISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEecCCCCEEEEEEecCcc-cCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            346789999999999986432 1125799988753222111100            0124544432      24999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus        87 ~~~D~G~Y~C~~~~~  101 (225)
T 1op3_H           87 RVEDTAIYYCARKGS  101 (225)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999874

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.59  E-value=0.00023  Score=64.86  Aligned_cols=74  Identities=20%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec------CceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD------GGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~------~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|.....  .+.+.+.|+.+........+..       ..++|+....      .-|.|.+++.+|
T Consensus       143 p~~~~v~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  220 (259)
T 3omz_A          143 QSSVSMPVRKAVTLNCLYETS--WWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLED  220 (259)
T ss_dssp             CCCEEEETTCCEEECCEEECC--CSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEECCCc--cCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhH
Confidence            455788999999999987642  1235899988753222111100       0123444331      129999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|.+.
T Consensus       221 sG~Y~C~~~  229 (259)
T 3omz_A          221 SAKYFCALG  229 (259)
T ss_dssp             CSEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999995

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=97.59  E-value=0.00023  Score=58.41  Aligned_cols=74  Identities=22%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeec---C---ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVD---G---GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~---~---GLlI~~v  341 (378)
                      ..+.+.+|+++.|+|.....+ .....|.|+.+...++...|- .           ...+|+....   .   -|.|.++
T Consensus        10 ~~~~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (121)
T 2xt1_B           10 GGGLVQAGGSLRLSCAASGSF-FMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDL   88 (121)
T ss_dssp             CCEEEETTCCEEEEEEEESSS-CCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEeCCCCEEEEEEecCee-ccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCC
Confidence            357889999999999986321 223479999875332222121 0           0123544432   1   3999999


Q ss_pred             cCCCCeEEEEEeC
Q psy10772        342 EELDAGKYDCWLG  354 (378)
Q Consensus       342 ~~~DsG~Y~C~~~  354 (378)
                      +.+|+|.|.|...
T Consensus        89 ~~~DsG~Y~C~~~  101 (121)
T 2xt1_B           89 KPEDTAMYYCKAS  101 (121)
T ss_dssp             CGGGCEEEEEEET
T ss_pred             CHHHCEEEEEEEE
Confidence            9999999999986

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=97.59  E-value=0.00011  Score=69.42  Aligned_cols=80  Identities=11%  Similarity=0.046  Sum_probs=54.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccC--CCCCCCCeEEEEecccCceeeEeeccCcceEeecC-----ceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLP--ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG-----GLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~--~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~-----GLlI~~v~~~DsG~Y~C  351 (378)
                      .....+..|+++.|.|.....  +..+.+.|.|++++..     |.   ++++....+     -|.|.+++..|+|.|.|
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~-----l~---~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c   78 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAEL-----QP---GGRQQRLSDGTQESIITLPHLNHTQAFLSCS   78 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCB-----CT---TCEECCCSSSCCCEEEEESCCCSSEEEEEEE
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEE-----CC---ccceEEEecCeEEEEEEEeccCCCccceEEe
Confidence            345678899999999998764  1123468999988754     31   222222122     39999999999999999


Q ss_pred             EeCC---eeeEEEeeeec
Q psy10772        352 WLGN---TVLCTHNLTVD  366 (378)
Q Consensus       352 ~~~~---~~l~~~~~~v~  366 (378)
                      .+.+   +..+.-.|.|.
T Consensus        79 ~~~~~~~~~~~~~~l~v~   96 (313)
T 2d9q_B           79 LNWGNSLQILDQVELRAG   96 (313)
T ss_dssp             EESSSSEEEEEEEEEEEC
T ss_pred             eecCCCceeEEEEEEccC
Confidence            9965   33444455554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.59  E-value=6.5e-05  Score=64.39  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=50.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe-ee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT-VL  358 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~-~l  358 (378)
                      ..+.+.+|+++.|.|...+.+.  ...+.|+.++..     +.  .      ...-|.|.+++.+|+|.|.|.+.+. .-
T Consensus        15 ~~~~v~~G~~v~L~C~~~~~p~--~~~~~W~~~~~~-----~~--~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~s   79 (175)
T 1fnl_A           15 QWYSVLEKDSVTLKCQGAYSPE--DNSTQWFHNESL-----IS--S------QASSYFIDAATVNDSGEYRCQTNLSTLS   79 (175)
T ss_dssp             CCSEEETTCCEEEEEECCCBTT--BCCCEEEETTEE-----EE--S------SCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             CceeeeCCCcEEEEeeCCCCCC--CcceEEEECCEE-----cc--C------CceEEEEeCCCcccCEEEEEEeeCCccc
Confidence            3457889999999999865433  113789987653     42  1      2346899999999999999999872 22


Q ss_pred             EEEeeeec
Q psy10772        359 CTHNLTVD  366 (378)
Q Consensus       359 ~~~~~~v~  366 (378)
                      ....|.|.
T Consensus        80 ~~~~l~V~   87 (175)
T 1fnl_A           80 DPVQLEVH   87 (175)
T ss_dssp             CCEEEEEE
T ss_pred             ccEEEEEe
Confidence            33444444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.59  E-value=0.00049  Score=69.90  Aligned_cols=128  Identities=19%  Similarity=0.139  Sum_probs=73.8

Q ss_pred             EEEEEEEEeeeecCCCeEEEEEEECCCeeE-EEEeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCCC
Q psy10772        225 HLVVDVVQYEVFGTTSEYIVYFAATTTLRT-VFVKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASMA  303 (378)
Q Consensus       225 ~IaVd~v~~~~~~~~~~ytV~flGT~~G~v-~~V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La  303 (378)
                      .+.+..++..|   .+.|.+. +....|.. ..+...+...     |..-   ...+.+.+.+|+++.|.|.....+  +
T Consensus        76 ~L~I~~v~~~D---~G~Y~C~-~~n~~~~~~~~~~l~V~~~-----p~~~---~~~~~~~v~~G~~v~l~C~~~~~~--~  141 (585)
T 2ocw_A           76 VVNIAQLSQDD---SGRYKCG-LGINSRGLSFDVSLEVSQG-----PGLL---NDTKVYTVDLGRTVTINCPFKTEN--A  141 (585)
T ss_pred             EEEECCCCccc---CEEEEEE-cccCCCCceEEEEEEEecC-----cccc---CCCccEEEEcCCCEEEEEEecCCC--C
Confidence            34555555554   5889987 34444432 2222112111     1111   134567889999999999986432  2


Q ss_pred             CCCeEEEEecccCceeeEee-------ccCcceEeecC-------ceEEeeecCCCCeEEEEEeCC---eeeEEEeeeec
Q psy10772        304 NQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG-------GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVD  366 (378)
Q Consensus       304 ~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~-------GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~  366 (378)
                      .+.+.|+.++.+.-. .+..       ...+++....+       -|.|.+++.+|+|.|.|.+.|   ..-....|+|.
T Consensus       142 ~~~v~W~k~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  220 (585)
T 2ocw_A          142 QKRKSLYKQIGLYPV-LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL  220 (585)
T ss_pred             CccEEEEECCCCCce-EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEc
Confidence            246999988643100 0100       01233333322       399999999999999999987   33456667665


Q ss_pred             c
Q psy10772        367 A  367 (378)
Q Consensus       367 ~  367 (378)
                      .
T Consensus       221 ~  221 (585)
T 2ocw_A          221 K  221 (585)
T ss_pred             c
Confidence            4

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.58  E-value=0.0003  Score=66.97  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|.....+ .+.+.|.|+.+........+..            ...+|+....      .-|.|.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYT-FTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR   87 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSC-TTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCcEEEEEEcCCcc-ccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence            46788999999999986542 2335799998742211110100            1134554432      149999999


Q ss_pred             CCCCeEEEEEeCCee---eEEEeeeecc
Q psy10772        343 ELDAGKYDCWLGNTV---LCTHNLTVDA  367 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~~---l~~~~~~v~~  367 (378)
                      .+|+|.|.|.+.+..   -....|+|..
T Consensus        88 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             GGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             cccCEEEEEEEecCcceecCcEEEEEec
Confidence            999999999999831   1334566654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=97.58  E-value=8.4e-05  Score=65.48  Aligned_cols=79  Identities=14%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             EEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC--
Q psy10772        283 TVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .+.+|+++.|.|.. .+.+.   |.++|+.+...    .+............+|    |.|.+++.+|+|.|.|.+.|  
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~---~~v~W~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~  193 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPE---AEVFWKDGQGV----PLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPV  193 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSC---CEEEEECTTSC----BCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETT
T ss_pred             eecCCceEEEEEecccccCC---CeEEEEcCCCc----cCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCC
Confidence            56789999999998 43333   58999763221    0110001112223444    67999999999999999986  


Q ss_pred             -eeeEEEeeeeccc
Q psy10772        356 -TVLCTHNLTVDAH  368 (378)
Q Consensus       356 -~~l~~~~~~v~~~  368 (378)
                       ..-++..|.|.+.
T Consensus       194 g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          194 LQQDAHGSVTITGQ  207 (222)
T ss_dssp             TTEEEEEEEECCC-
T ss_pred             CCCceEEEEEEeCC
Confidence             5667777877654

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=97.58  E-value=0.00023  Score=57.53  Aligned_cols=76  Identities=14%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCC---CCCCCeEEEEecccCceeeEeec---------cCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPAS---MANQPMSWYHYSKDKGRYQIKFR---------SDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~---La~~~v~W~~~~~~~~~~~l~~~---------~~~~~~~~~~------GLlI~~v  341 (378)
                      +.+.+.+|+++.|+|....+..   .....|.|+.+...+.. .|...         ..+|+....+      -|.|.+|
T Consensus         8 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~-~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (119)
T 1qfo_A            8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQ-VVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (119)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCE-EEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CEEEEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCCCCCC-EEEECCCCcccCccceeeEEEeCCCCCCEEEEEEccC
Confidence            5688999999999999764432   22246899987542211 12111         1235544322      3999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.....
T Consensus        87 ~~~Dsg~Y~C~v~~~  101 (119)
T 1qfo_A           87 KPEDSGTYNFRFEIS  101 (119)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CcccCceEEEEEEeC
Confidence            999999999998653

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=97.58  E-value=0.0002  Score=57.56  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc------c-----CceeeEeeccCcceEee------cCceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK------D-----KGRYQIKFRSDKFIRTV------DGGLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~------~-----~~~~~l~~~~~~~~~~~------~~GLlI~~v  341 (378)
                      ...+.+.+|+++.|+|....... ....+.|+.+..      .     .+. .+.....+|+...      .--|.|.+|
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~-~~~~v~W~~~~~~~~~~~~~~i~~~~~-~~~~~~~~r~~~~~~~~~~~~sL~I~~v   81 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLG-GIVPMCWGLGECRHSYCIRSLIWTNGY-TVTHQRNSRYQLKGNISEGNVSLTIENT   81 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHH-CSCCEEEEESCHHHHTTTTEEEEECSS-SEEEESSTTEECCSCGGGTBCCEEESSC
T ss_pred             ccEEEEEcCCCEEEEEEeecCCC-CCEEEEEECCCCCcCCCceEEEEeCCe-EcccccCccEEEecCccCCeEEEEEccC
Confidence            35678999999999998753211 123799988741      0     010 0111123344332      124999999


Q ss_pred             cCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        342 EELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                      +.+|+|.|.|....   ..-+...|.|..
T Consensus        82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (115)
T 2or7_A           82 VVGDGGPYCCVVEIPGAFHFVDYMLEVKP  110 (115)
T ss_dssp             CGGGCEEEEEEECCTTSCEEEEEEEEEES
T ss_pred             CHHHCEEEEEEEECCCceeEEEEEEEEcC
Confidence            99999999999885   224555665543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.58  E-value=2.7e-05  Score=68.10  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-cCcceEeecCceEEeeecCCCCeEEEEEeCCee----
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-SDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV----  357 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~----  357 (378)
                      .+.+|+++.|.|...+.+.    .++|+.++..     +... ...+......-|.|.+++.+|+|.|.|.+.|..    
T Consensus        15 ~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~   85 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ----EYRLYREKKT-----APWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRS   85 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC----CEEEEESSSC-----CHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEEC
T ss_pred             cccCCCcEEEEEEecCCCc----EEEEEECCcc-----ccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcc
Confidence            6789999999999865433    6999988754     3110 111111234459999999999999999996532    


Q ss_pred             --eEEEeeeecc
Q psy10772        358 --LCTHNLTVDA  367 (378)
Q Consensus       358 --l~~~~~~v~~  367 (378)
                        -....|.|..
T Consensus        86 ~~s~~~~l~V~~   97 (198)
T 1ugn_A           86 ESSDPLELVVTG   97 (198)
T ss_dssp             CCCCCEEEEEEC
T ss_pred             cCCccEEEEEcc
Confidence              2335566654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.58  E-value=7.3e-05  Score=64.98  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc----CcceEeecCceEE-----eeecCCCCeEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS----DKFIRTVDGGLVI-----MAVEELDAGKY  349 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~----~~~~~~~~~GLlI-----~~v~~~DsG~Y  349 (378)
                      ...+.+.+|+++.|.|...+.+.   +.++|+.++..     +....    ..+....+.++.+     .+++..|+|.|
T Consensus        16 p~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A           16 PSDLIVSKGEPATLNCKAEGRPT---PTIEWYKGGER-----VETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             CCCEEECTTCCEEECCEEEEESC---CEEEEEETTEE-----CCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCceEEeCCCcEEEEEEcCCCCC---CEEEEEECCEE-----eeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            35578889999999999865433   58999988654     22100    1122233344444     45689999999


Q ss_pred             EEEeCCee----eEEEeeeecc
Q psy10772        350 DCWLGNTV----LCTHNLTVDA  367 (378)
Q Consensus       350 ~C~~~~~~----l~~~~~~v~~  367 (378)
                      .|.+.+..    -....|.|..
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~  109 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAI  109 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEECCCCceeecceEEEEEe
Confidence            99998621    2345555543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=97.58  E-value=0.00018  Score=65.82  Aligned_cols=76  Identities=20%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecCc------eEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDGG------LVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~G------LlI~~v  341 (378)
                      ..+.+.+|+++.|.|..... ....+.|.|+.+....+...+- .           ...+|+....++      |.|.++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGF-TFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCEEECCCCcEEEEEEeeCc-cccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            35678899999999998642 1223479998875332221120 0           112354444332      999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (253)
T 3liz_H           87 KSEDTAMYYCTRDPA  101 (253)
T ss_dssp             CGGGCEEEEEEECCB
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999874

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.57  E-value=9.7e-05  Score=60.34  Aligned_cols=76  Identities=18%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCceeeE---------eecc----CcceEeecC-----------
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGRYQI---------KFRS----DKFIRTVDG-----------  334 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~~~l---------~~~~----~~~~~~~~~-----------  334 (378)
                      ..+.+.+|+++.|+|....+..- ....|.|+.+........+         ....    .+|+....+           
T Consensus        10 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~   89 (128)
T 3r0n_A           10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAE   89 (128)
T ss_dssp             SEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCB
T ss_pred             CeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccC
Confidence            45778899999999998654320 1116899886311000000         0001    134333222           


Q ss_pred             ----ceEEeeecCCCCeEEEEEeCC
Q psy10772        335 ----GLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       335 ----GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                          .|.|.+|+.+|+|.|.|....
T Consensus        90 ~~~~sL~I~~v~~~D~G~Y~C~v~~  114 (128)
T 3r0n_A           90 LQDATLALHGLTVEDEGNYTCEFAT  114 (128)
T ss_dssp             CSBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEEEccCCchhCeEEEEEEEe
Confidence                599999999999999998643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.57  E-value=7.5e-05  Score=68.16  Aligned_cols=70  Identities=13%  Similarity=-0.022  Sum_probs=0.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++..               ....|-++. ++.+|+|.|.|.+.|   .
T Consensus       193 ~~~~v~~g~~~~l~C~~~g~P~---p~i~W~~~~~~---------------~~~~g~~~~-v~~~d~G~Y~C~a~N~~G~  253 (265)
T 2oz4_A          193 GNWTWPENSQQTPMCQAWGNPL---PELKCLKDGTF---------------PLPIGESVT-VTRDLEGTYLCRARSTQGE  253 (265)
T ss_dssp             SEEEEETTCEECCCCCCEEESC---CEEEEEETTTE---------------ECCTTSCEE-CCGGGCEEEEEEEEETTEE
T ss_pred             CccEEcCCCeEEEEeECccCCC---CeEEEEECCcc---------------cCCCCcEEE-eehhhCeEEEEEEECCCCc


Q ss_pred             eeEEEeeeeccc
Q psy10772        357 VLCTHNLTVDAH  368 (378)
Q Consensus       357 ~l~~~~~~v~~~  368 (378)
                      .-++..|+|...
T Consensus       254 ~~~~~~l~V~~p  265 (265)
T 2oz4_A          254 VTREVTVNVLSP  265 (265)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEecC

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.57  E-value=0.00016  Score=65.72  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeec-------cCcceEeecCc----eEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFR-------SDKFIRTVDGG----LVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~G----LlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|.....+.   + .+.|+.+........+...       ..+|+.....+    |.|.+|+.+|+
T Consensus       148 p~~~~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  224 (257)
T 3gkz_A          148 PAIMSASPGEKVTLTCSASSSVS---SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDA  224 (257)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCC---GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CceEEEeCCCcEEEEEEEccCcc---ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHC
Confidence            34578889999999999865322   3 7999886432211111100       11343332222    99999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus       225 G~Y~C~~~~  233 (257)
T 3gkz_A          225 ASYFCHQWS  233 (257)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEcc
Confidence            999999987

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.57  E-value=0.00018  Score=67.64  Aligned_cols=79  Identities=24%  Similarity=0.341  Sum_probs=55.7

Q ss_pred             eEEEEeCCeeeeeee-----eccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC--ceEEeeecCCCCeEEEEEe
Q psy10772        281 KQTVTWGQSVHLSCF-----VKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG--GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~-----~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~--GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+.+|+++.|.|.     ..+.   +.+.++|+.++..     +.. ...++....+  -|.|.+++..|+|.|.|.+
T Consensus       129 ~~~~~~g~~v~l~C~~~~~~~~g~---p~~~v~W~k~g~~-----~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  199 (339)
T 3o4o_C          129 PQILTLSTSGVLVCPDLSEFTRDK---TDVKIQWYKDSLL-----LDK-DNEKFLSVRGTTHLLVHDVALEDAGYYRCVL  199 (339)
T ss_dssp             EEEEETTSCEEEECCSCTTTCCSS---SCCCBCCEESSCB-----CCT-TCSSEEECTTSSEEEESSCCGGGCEEEEEEE
T ss_pred             ceEEECCCCEEEEecCCcccccCC---CCceEEEecCCee-----CCC-CCceeEEcCCcceEEEcccCHhhCeEEEEEE
Confidence            357889999999998     4333   3368999988754     321 2234444443  3999999999999999999


Q ss_pred             CC-------eeeEEEeeeeccc
Q psy10772        354 GN-------TVLCTHNLTVDAH  368 (378)
Q Consensus       354 ~~-------~~l~~~~~~v~~~  368 (378)
                      .|       ..-.+..|.|...
T Consensus       200 ~n~~g~~~~~~~~~~~l~V~~~  221 (339)
T 3o4o_C          200 TFAHEGQQYNITRSIELRIKKK  221 (339)
T ss_dssp             ECCBTTBCCEEEEEEEEEEECC
T ss_pred             EECCCCeEEEEEEEEEEEEEcC
Confidence            76       2455677777643

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.57  E-value=0.00025  Score=58.72  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|-.           ...+|+....   .   -|.|.+++.
T Consensus         9 ~~~~~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   87 (127)
T 1kxt_B            9 GGSVQAGGSLRLSCAASGY-TFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKP   87 (127)
T ss_dssp             CEECCTTCCEEEEEEEC---CCSSSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCCG
T ss_pred             CEEEeCCCCEEEEeEecCC-CccceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCCH
Confidence            4677889999999998532 12234799998754333222211           0123555442   2   399999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|...+.
T Consensus        88 ~Dsg~Y~C~~~~~  100 (127)
T 1kxt_B           88 EDTAVYYCAAGPG  100 (127)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             HHCEEEEEEEEcC
Confidence            9999999999863

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=97.56  E-value=0.00015  Score=58.94  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....|.|+.+...++...|- ..           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (120)
T 3b9v_A            9 GGLVQPGGSLRLSCAASGFN-IKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLR   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEeCCccEEEEEEeeCcc-ccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCC
Confidence            46788999999999986321 122479999875433221121 11           123554432   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (120)
T 3b9v_A           88 AEDTAVYYCARWG  100 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.56  E-value=0.00018  Score=64.38  Aligned_cols=74  Identities=20%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-ee-----------ccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KF-----------RSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~-----------~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.|.|+.+........+ ..           ....|+....+      -|.|.++
T Consensus       127 ~~~~v~~G~~v~L~C~~~g~p~-~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  205 (240)
T 1moe_A          127 GAELVEPGASVKLSCTASGFNI-KDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL  205 (240)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEeCCCcEEEEEEEcCccC-CCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcC
Confidence            4567889999999999875432 1247999987422111001 00           01234444432      3999999


Q ss_pred             cCCCCeEEEEEeC
Q psy10772        342 EELDAGKYDCWLG  354 (378)
Q Consensus       342 ~~~DsG~Y~C~~~  354 (378)
                      +.+|+|.|.|.+.
T Consensus       206 ~~~D~G~Y~C~a~  218 (240)
T 1moe_A          206 TSEDTAVYYCAPF  218 (240)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CHHHCEEEEEEEE
Confidence            9999999999998

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.56  E-value=7.1e-05  Score=66.51  Aligned_cols=76  Identities=26%  Similarity=0.323  Sum_probs=54.6

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      ....+.+.+|+++.|.|...+.+.   +.++|+.++.+     +.  .+     ...-|.|.+++..|+|.|.|.+.+..
T Consensus        24 ~p~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~-----~~--~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~   88 (218)
T 3k0w_A           24 NPESKAVLAGQFVKLCCRATGHPF---VQYQWFKMNKE-----IP--NG-----NTSELIFNAVHVKDAGFYVCRVNNNF   88 (218)
T ss_dssp             CCCCEEEETTSBEEEECEETTTTS---SEEEEEETTEE-----CT--TC-----CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred             CCCCeEEeCCCcEEEEeeecCCCC---CEEEEEECCEE-----CC--CC-----CCCEEEEccCChhhCeEeEEEEEcCC
Confidence            345678899999999999865433   58999987653     32  11     23569999999999999999998731


Q ss_pred             ----eEEEeeeeccc
Q psy10772        358 ----LCTHNLTVDAH  368 (378)
Q Consensus       358 ----l~~~~~~v~~~  368 (378)
                          -....|.|...
T Consensus        89 ~~~~s~~~~l~V~~~  103 (218)
T 3k0w_A           89 TFEFSQWSQLDVCDI  103 (218)
T ss_dssp             CCEECCCEEEEEECC
T ss_pred             CCceeeEEEEEEEcc
Confidence                23355555543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.56  E-value=0.0002  Score=64.44  Aligned_cols=73  Identities=19%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------ecc---CcceEeecC-----ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------FRS---DKFIRTVDG-----GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~~~---~~~~~~~~~-----GLlI~~v~  342 (378)
                      ...+.+.+|+++.|.|...    .+.+.|.|+.+........+.        ...   ++|+.....     -|.|.+|+
T Consensus         9 p~~v~v~~G~~v~L~C~~~----~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   84 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNCDPV----SNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTA   84 (245)
T ss_dssp             CSEEEEETTCCEEEEEECC----TTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCC
T ss_pred             CceEEecCCCCEEEEEEcC----CCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCC
Confidence            3567899999999999442    223589998753221111010        001   145444332     49999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus        85 ~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           85 LEDSAVYFCASSF   97 (245)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HhHCEEEEEEEcc
Confidence            9999999999973

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.54  E-value=4.2e-05  Score=66.21  Aligned_cols=66  Identities=20%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             EEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeecc-------CcceEe--ecCceEEeeecCCCCeEEEE
Q psy10772        282 QTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRS-------DKFIRT--VDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~-------~~~~~~--~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      ..+..|+++.|.|.. .+.+   .|.++|+.++.+     +....       +.++..  ...-|.|.+++.+|+|.|.|
T Consensus       117 ~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  188 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQDGSP---PSEYTWFKDGIV-----MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC  188 (209)
T ss_dssp             SEEETTSCEEECCCCCSCBS---CCEEEEEETTCC-----CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEE
T ss_pred             cceecCCEEEEEEeCCCCCC---CceeEEEECCee-----CCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEE
Confidence            357889999999985 4433   368999998764     22100       011111  34459999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      .+.|
T Consensus       189 ~a~n  192 (209)
T 1nbq_A          189 EARN  192 (209)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9988

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=97.54  E-value=0.00032  Score=74.47  Aligned_cols=115  Identities=16%  Similarity=0.250  Sum_probs=70.9

Q ss_pred             eEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE-eceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCC
Q psy10772        224 THLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV-KVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM  302 (378)
Q Consensus       224 T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V-~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~L  302 (378)
                      ..+.+..+...|   .+.|++. +-...|..... ...+...     |. -.  .....+.+.+|+++.|.|...+.+. 
T Consensus       677 ~~L~i~~v~~~d---~G~Y~C~-a~N~~g~~~~~~~l~V~~~-----P~-~~--~~~~~~~v~~G~~v~l~C~~~g~P~-  743 (816)
T 3dmk_A          677 SVLTIEAVEASH---AGNFTCH-ARNLAGHQQFTTPLNVYVP-----PR-WI--LEPTDKAFAQGSDAKVECKADGFPK-  743 (816)
T ss_dssp             EEEEEESCCGGG---CEEEEEE-EECSSCEEEEEEEECEEEE-----EE-EE--ECCCCEEEETTCCEEEECEEEEESC-
T ss_pred             eEEEEccCChhh---CEEEEEE-EEeCCccEEEEEEEEEEeC-----Cc-ee--eecccceecCCCcEEEEEEEecCCC-
Confidence            345555555554   5788887 44455654322 1111111     00 00  1223467889999999999976544 


Q ss_pred             CCCCeEEEEecccC-c-eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        303 ANQPMSWYHYSKDK-G-RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       303 a~~~v~W~~~~~~~-~-~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                        |.|+|+.++... + ...+.  .+.++...+.-|.|.+++.+|+|.|.|.+.|
T Consensus       744 --p~i~W~k~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  794 (816)
T 3dmk_A          744 --PQVTWKKAVGDTPGEYKDLK--KSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN  794 (816)
T ss_dssp             --CEEECCEECSSSTTCCBCCC--CBTTEEEETTEEEECSCCGGGCEEEEEEEEC
T ss_pred             --CeEEEEecCCCCCccccccc--cCCCEEecCCEEEECcCChhhCeEEEEEEEe
Confidence              689999986431 1 11122  3344555556699999999999999999998

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.54  E-value=0.0002  Score=57.67  Aligned_cols=74  Identities=22%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc---CceeeEe-ec-----------cCcceEeec--C----ceEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD---KGRYQIK-FR-----------SDKFIRTVD--G----GLVI  338 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~---~~~~~l~-~~-----------~~~~~~~~~--~----GLlI  338 (378)
                      +.+.+.+|+++.|.|......  ....|.|+.+...   ++...|- ..           ..+|+....  .    -|.|
T Consensus         6 ~~~~~~~G~~vtL~C~~~~~~--~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (115)
T 2atp_B            6 SSLLVQTNHTAKMSCEVKSIS--KLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSC--CSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             CCEEEcCCCcEEEEEEecCCC--CcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEE
Confidence            457888999999999986432  1247999887532   1111110 00           124554432  2    3999


Q ss_pred             eeecCCCCeEEEEEeCC
Q psy10772        339 MAVEELDAGKYDCWLGN  355 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~  355 (378)
                      .+++.+|+|.|.|....
T Consensus        84 ~~~~~~DsG~Y~C~~~~  100 (115)
T 2atp_B           84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             CCCCHHHCEEEEEeEcc
Confidence            99999999999999864

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=97.54  E-value=0.00029  Score=60.04  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee----cCceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV----DGGLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~----~~GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|......   ...+.|+.+...++...|-..       ..+|+...    .--|.|.+|+.+|+|.
T Consensus         8 ~~v~v~~G~~vtL~C~~s~~~---~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~   84 (143)
T 3u6r_L            8 ATLSLSPGERATLSCRASQSV---NKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAV   84 (143)
T ss_dssp             SEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CEEEEeCCCCEEEEEEECCCC---ceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEE
Confidence            457888999999999986543   247999987533222112110       12344332    1239999999999999


Q ss_pred             EEEEeCCe
Q psy10772        349 YDCWLGNT  356 (378)
Q Consensus       349 Y~C~~~~~  356 (378)
                      |.|.+.+.
T Consensus        85 Y~C~~~~~   92 (143)
T 3u6r_L           85 YYCQQRSD   92 (143)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEecC
Confidence            99999864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.54  E-value=0.00024  Score=64.63  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cCc---eEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DGG---LVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~G---LlI~~v~~~DsG  347 (378)
                      ...+.+.+|+++.|.|.....+.  .+.|.|+.+........+..       ..++|+... +.+   |.|.+++.+|+|
T Consensus       156 ~~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  233 (256)
T 3juy_B          156 PGTLSLSPGERATFSCRSSHSIR--SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFA  233 (256)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCT--TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCeEEEeCCCCEEEEEEECCCcC--CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCE
Confidence            45678889999999999865322  25899987642221111100       012333322 222   999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+.+
T Consensus       234 ~Y~C~~~~  241 (256)
T 3juy_B          234 LYYCQVYG  241 (256)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEee
Confidence            99999987

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.53  E-value=0.00016  Score=66.05  Aligned_cols=80  Identities=24%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeC-C--
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLG-N--  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~-~--  355 (378)
                      ..+.+.+|+++.|.|....++.  .+.++|+..+..    .+.  .+.++. ....+|.|.+++..|+|.|.|.+. +  
T Consensus        97 ~~~~v~~g~~v~L~C~~~~~~~--~~~v~W~~~~~~----~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~  168 (289)
T 3ejj_X           97 QEVTVVEGQEAVLPCLITDPAL--KDSVSLMREGGR----QVL--RKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR  168 (289)
T ss_dssp             SEEEEETTSCEEECEEESCGGG--GGSEEEEEGGGE----ECC--TTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEecCCceEeEEEccCCCc--ceEEEEEecCCe----ecC--CCccEEECCCCCEEEeecccccCEEEEEEEEeCCC
Confidence            5678889999999999875443  123999864322    122  333333 345679999999999999999997 3  


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       ..-....|.|..
T Consensus       169 ~~~~~~~~l~V~~  181 (289)
T 3ejj_X          169 ESTSTGIWLKVNR  181 (289)
T ss_dssp             EEECCCEEEEEES
T ss_pred             ccccccEEEEEEE
Confidence             333556666654

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=97.53  E-value=0.00022  Score=58.29  Aligned_cols=74  Identities=19%  Similarity=0.191  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|+|..... ......|.|+.+...++...|.. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~-~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (123)
T 2wzp_D            9 GGLVQAGGSLRLSCTASRR-TGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLK   87 (123)
T ss_dssp             CEEEETTCCEEEEEEESSC-CSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCC
T ss_pred             CEEEcCCCcEEEEEEecCC-CccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCC
Confidence            4678899999999998532 12234799998754322211211 0           123554432   1   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (123)
T 2wzp_D           88 PEDTAIYYCAARS  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=97.53  E-value=0.00023  Score=64.29  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeec--C---ceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVD--G---GLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~--~---GLlI~~v~~  343 (378)
                      ...+.+.+|+++.|.|....+    .+.|.|+.+....+...+..          ...+|+....  .   -|.|.+|+.
T Consensus         6 p~~v~v~~G~~v~L~C~~~~~----~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQTNN----HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             CSEEEEETTCCEEEEEEESSC----CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             CCeeEEeCCCcEEEEEEeCCC----CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            346789999999999998432    35799998753222111110          0123444332  1   499999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.+.
T Consensus        82 ~D~G~Y~C~~~~~   94 (238)
T 1bec_A           82 SQTSVYFCASGGG   94 (238)
T ss_dssp             GGCEEEEEEEESC
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999764

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=97.53  E-value=0.00011  Score=59.31  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=47.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|+|...... .....|.|+.+...++...|- ..          ..+|+....   .   -|.|.+++.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   87 (114)
T 1sjv_A            9 GGLVQAGESLKLSCAASGNT-FSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEP   87 (114)
T ss_dssp             CCCCCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEEcCcc-ccCCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCCH
Confidence            35677899999999985321 123479999875332221121 00          123554432   2   399999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|...+
T Consensus        88 ~DsG~Y~C~~~~   99 (114)
T 1sjv_A           88 EDTAVYYCYTHY   99 (114)
T ss_dssp             GGCSEEEEEECC
T ss_pred             HHCEEEEEeEEc
Confidence            999999999875

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=97.53  E-value=0.00013  Score=67.67  Aligned_cols=74  Identities=15%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeecC-----ceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVDG-----GLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~~-----GLlI~~v  341 (378)
                      .+.+.+.+|+++.|.|.....+   .+.|.|+.+...++...+..            ...+|+....+     -|.|.+|
T Consensus        31 p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v  107 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA  107 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESSSC---EEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSC
T ss_pred             CCeEEecCCCeEEEEEEeCCCC---CCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccC
Confidence            4568899999999999985332   35799998753221111100            01234444321     4999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.+
T Consensus       108 ~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D          108 HPEDSSFYICSARD  121 (279)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CccCCEEEEEEEcc
Confidence            99999999999976

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=97.53  E-value=0.00016  Score=59.00  Aligned_cols=74  Identities=20%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|+|...... .....|.|+.+...++...|- ..           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (121)
T 1j05_H            9 AELVEPGASVKLSCTASGFN-IKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEeCCCcEEEEEEecCcc-cCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            46788999999999986321 122469998875432221121 10           123544432   1   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (121)
T 1j05_H           88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999864

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=97.52  E-value=0.00029  Score=58.69  Aligned_cols=73  Identities=25%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCc---eeeE-eecc-------------CcceEe-ecC----ceE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKG---RYQI-KFRS-------------DKFIRT-VDG----GLV  337 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~---~~~l-~~~~-------------~~~~~~-~~~----GLl  337 (378)
                      ..+++.+|+++.|.|.......   ..+.|+.+...++   ..-| ....             .+|+.. ...    -|.
T Consensus        12 ~~~~v~~G~~vtL~C~~s~~~~---~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~~L~   88 (128)
T 1nez_G           12 KKMDAELGQKVDLVCEVLGSVS---QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLT   88 (128)
T ss_dssp             SCEEECTTCCEEEEEEEESCCS---SCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEE
T ss_pred             CeEEEcCCCCEEEEEEeCccCC---CcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCCCEEEEE
Confidence            4568889999999999854322   3699998864433   1112 1101             234443 322    299


Q ss_pred             EeeecCCCCeEEEEEeCC
Q psy10772        338 IMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       338 I~~v~~~DsG~Y~C~~~~  355 (378)
                      |.+++.+|+|.|.|.+..
T Consensus        89 I~~~~~~Dsg~YyCa~~~  106 (128)
T 1nez_G           89 LNKFSKENEGYYFCSVIS  106 (128)
T ss_dssp             ESSCCGGGCEEEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEcC
Confidence            999999999999999853

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=97.52  E-value=0.00057  Score=56.31  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec---C---ceEEeeecCC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD---G---GLVIMAVEEL  344 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~---~---GLlI~~v~~~  344 (378)
                      ..+.+.+.+|+++.|+|....... ....+.|+.+...++...|-.       ...+|+...+   .   -|.|.+|+.+
T Consensus        16 ~~~~v~~~~G~svtL~C~~s~~~~-~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~   94 (122)
T 1hkf_A           16 KAQVLQSVAGQTLTVRCQYPPTGS-LYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREE   94 (122)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTT-CCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCceEEEecCCCEEEEeEccCCCC-cccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHH
Confidence            356788999999999999753211 123689988754322111211       0124554421   2   2999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|....
T Consensus        95 Dsg~Y~C~v~~  105 (122)
T 1hkf_A           95 DSGHYWCRIYR  105 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEEEEc
Confidence            99999999875

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.52  E-value=3.9e-05  Score=67.07  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE---eecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR---TVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~---~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|.....+    +.++|+.++........    .....   ....-|.|.+|+.+|+|.|.|.+.|
T Consensus       109 ~~v~~G~~v~L~C~~~~~p----~~~~W~k~g~~~~~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  177 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF----DRFILTEEGDHKLSWTL----DSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR  177 (196)
T ss_dssp             --------CEEEEEESSCC----SEEEEEEC---CCEEEE----ECEECTTSCEEEEEECCCCBTTBCEEEEEEEEE
T ss_pred             ccccCCCcEEEEEEcCCCC----CEEEEEccCCccccccc----ccccccCCCceeEEEeeecCcccCeeEEEEEEc
Confidence            4678899999999986553    47999998764110000    00011   1124599999999999999999986

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.52  E-value=5.1e-05  Score=66.21  Aligned_cols=68  Identities=19%  Similarity=0.312  Sum_probs=45.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+.+|+++.|.|....++    +.+.|+.++.........  ..........-|.|.+|+.+|+|.|.|.+.|.
T Consensus       110 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  177 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSPM----DTFLLCKERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHG  177 (196)
T ss_dssp             EECTTCCEEEEEEEEEEE----EEEEEEETTCCCGGGSEE--EEEEEEEEEEEEEECSCCGGGCEEEEEEEECG
T ss_pred             eecCCCeEEEEEecCCCC----CEEEEEeCCCcccceeec--ccccccCcceEEEeCCCcccCCCeEEEEEEcC
Confidence            567899999999987653    368999887541100000  00001123445999999999999999999873

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.52  E-value=0.0003  Score=57.39  Aligned_cols=74  Identities=24%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c----------cCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R----------SDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|...... .....+.|+.+...++...|-. .          ..+|+....   .   -|.|.+++.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   87 (121)
T 1kxv_C            9 GGTVPAGGSLRLSCAASGNT-LCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   87 (121)
T ss_dssp             CEEECTTCCEEEEEEEESCT-TCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCCC-cCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCH
Confidence            46788999999999986321 1224699998754333221211 0          123554432   2   399999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|...+
T Consensus        88 ~Dsg~Y~C~~~~   99 (121)
T 1kxv_C           88 DDTAMYYCKPSL   99 (121)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             HHCEEEEEEEEe
Confidence            999999999864

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.51  E-value=0.00025  Score=72.05  Aligned_cols=85  Identities=16%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             eeEEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccC-c---ceEeec-----CceEEeeecCCCCeEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSD-K---FIRTVD-----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~-~---~~~~~~-----~GLlI~~v~~~DsG~Y  349 (378)
                      ..+.+.+|+++.|.|.... +..-+.|.|+|++++.+     +....+ .   ++...+     .-|.|.+++.+|+|.|
T Consensus       450 ~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  524 (585)
T 2ocw_A          450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ-----ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY  524 (585)
T ss_pred             CceeEecCCcEEEEEEecCCCCCCccEEEEEeecCce-----eeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEE
Confidence            4567889999999998852 22334467899998764     321111 1   122222     2499999999999999


Q ss_pred             EEEeCCe----eeEEEeeeecccc
Q psy10772        350 DCWLGNT----VLCTHNLTVDAHS  369 (378)
Q Consensus       350 ~C~~~~~----~l~~~~~~v~~~~  369 (378)
                      .|.+.|.    .-.+..|+|...+
T Consensus       525 ~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          525 WCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEeEeCCCccEEEEEEEEEEeee
Confidence            9999983    2244778888765

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.51  E-value=0.00038  Score=64.54  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+ +..+.|.|+.+........|. .           ....|+....      --|.|.+|
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYS-FTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCEEEcCCCCEEEEEEeCCcc-cCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            467889999999999986432 112479999874322211110 0           0134554432      24999999


Q ss_pred             cCCCCeEEEEEeCCee----e--EEEeeeecc
Q psy10772        342 EELDAGKYDCWLGNTV----L--CTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~----l--~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+..    .  ..-.|+|..
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            9999999999998731    1  233677765

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.51  E-value=0.00016  Score=66.55  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC--CCCCeEEEEecccCceeeEee-------ccCcceEeec-C---ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM--ANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD-G---GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L--a~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~-~---GLlI~~v~~~D  345 (378)
                      ...+.+.+|+++.|.|.....+..  ..+.|.|+.+........|..       ..++|+.... .   .|.|.+|+.+|
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  101 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED  101 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence            345678899999999998654310  124799998753221111110       0123444321 2   49999999999


Q ss_pred             CeEEEEEeCCee---e-EEEeeeecc
Q psy10772        346 AGKYDCWLGNTV---L-CTHNLTVDA  367 (378)
Q Consensus       346 sG~Y~C~~~~~~---l-~~~~~~v~~  367 (378)
                      +|.|.|.+.+..   . ....|+|..
T Consensus       102 sG~Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A          102 LGVYFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEC---
T ss_pred             CEEEEEEEecCCCceEcCCEEEEEcc
Confidence            999999998741   1 234566654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.51  E-value=0.00027  Score=64.05  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee---------c---cCcceEee-cC-----ceEEee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF---------R---SDKFIRTV-DG-----GLVIMA  340 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~---------~---~~~~~~~~-~~-----GLlI~~  340 (378)
                      .+.+.+.+|+++.|.|..... ..+.+.|.|+.+...++...+..         .   ..+|+... +.     -|.|.+
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGI-TISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESS-CTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CceEEecCCCcEEEEEEeCCc-cccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            356789999999999998754 12335899998753222111110         0   23454432 12     399999


Q ss_pred             ecCCCCeEEEEEeCCe
Q psy10772        341 VEELDAGKYDCWLGNT  356 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~~  356 (378)
                      ++.+|+|.|.|...+.
T Consensus        87 v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           87 VEKQDIATYYCALWEA  102 (242)
T ss_dssp             CCGGGCEEEEEEEEEE
T ss_pred             CCcccCEEEEEeeecC
Confidence            9999999999999864

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=97.50  E-value=0.00067  Score=55.96  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=57.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec---Cc---eEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD---GG---LVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~---~G---LlI~~v~~~D  345 (378)
                      ...+.+.+|+++.|.|.....  .....+.|+.+....+...|...       ..+|+...+   .|   |.|.+|+.+|
T Consensus         9 p~~v~~~~G~svtL~C~~s~~--~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~D   86 (124)
T 2nms_A            9 PTTVNGLERGSLTVQCVYRSG--WETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTD   86 (124)
T ss_dssp             CSEEEEETTCCEEEEEEECTT--CTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ccEEEEeCCCCEEEEeEEeCC--cccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHH
Confidence            356788999999999987532  21224899887542221112111       123444332   22   8999999999


Q ss_pred             CeEEEEEeCC---eeeEEEeeeecccc
Q psy10772        346 AGKYDCWLGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       346 sG~Y~C~~~~---~~l~~~~~~v~~~~  369 (378)
                      +|.|.|....   +......|+|...+
T Consensus        87 sg~Y~C~~~~~~~~~~~~v~L~V~~~~  113 (124)
T 2nms_A           87 ADTYWCGIEKTGNDLGVTVQVTIDPAP  113 (124)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CEEEEEEEEcCCCCccEEEEEEEeCCC
Confidence            9999999874   45566788887754

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=97.50  E-value=0.00032  Score=57.93  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... +....|.|+.+...++...|- ..           ..+|+....   +   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (127)
T 1mqk_H            9 GDLVQPGGSLKLSCAASGFT-FSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEeCCCc-cCCcEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEECCCC
Confidence            45788899999999986321 122469999875433322221 11           123554432   1   39999999


Q ss_pred             CCCCeEEEEEeCCe---ee---EEEeeeeccccc
Q psy10772        343 ELDAGKYDCWLGNT---VL---CTHNLTVDAHSN  370 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~---~l---~~~~~~v~~~~c  370 (378)
                      .+|+|.|.|...+.   .+   ..-.|+|....+
T Consensus        88 ~~Dsg~Y~C~~~~~~~~~~~fg~gT~L~V~~~~~  121 (127)
T 1mqk_H           88 SEDTAMYYCVRHEYYYAMDYWGQGTTVTVSSAWR  121 (127)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC
T ss_pred             HHHCEEEEEEEecCCcCcceECCCEEEEEeCCcc
Confidence            99999999998652   21   233566655443

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=97.50  E-value=8.2e-05  Score=59.90  Aligned_cols=61  Identities=26%  Similarity=0.399  Sum_probs=40.2

Q ss_pred             EEeCCeeeeeeeeccCCCCC--CCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMA--NQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La--~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+|+++.|.|....++.-.  ...+.|+.++..     +.  .    .....-|.|.+|+..|+|.|.|.+.+
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~-----l~--~----~~~~~~l~i~~v~~~dsG~Y~C~~~~   81 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRI-----VQ--S----RGLSSEFQIPTASEDHSGSYWCEAAT   81 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEETTEE-----EE--E----EESCCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcC-----cc--C----CCcccEEEeCccCcccCeEEEEEEEe
Confidence            56799999999985432200  002789887643     32  1    12345589999999999999999986

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.50  E-value=0.00028  Score=65.45  Aligned_cols=74  Identities=19%  Similarity=0.374  Sum_probs=46.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee--------eEee--ccCcceEee-----cCceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY--------QIKF--RSDKFIRTV-----DGGLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~--------~l~~--~~~~~~~~~-----~~GLlI~~v~~~  344 (378)
                      ..+++.+|+++.|+|....+..  .+.|+|+.++.+....        ....  ....|+...     +.-|.|.+++.+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   84 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNET--ITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFS   84 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSC--EEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGG
T ss_pred             CEeEEEcCCcEEEEEEecCCCC--CcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHH
Confidence            3578899999999998753322  1358998765431110        0000  011233221     234999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|.+.+
T Consensus        85 D~G~Y~C~a~n   95 (308)
T 4fom_A           85 DSGKYICKAVT   95 (308)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEee
Confidence            99999999854

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=97.49  E-value=0.00015  Score=58.66  Aligned_cols=76  Identities=14%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c---------cCcceEeec---C---ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R---------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~---------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+.+|+++.|.|...... .....+.|+.+...++...|-. .         .++|+....   .   -|.|.+++
T Consensus         6 p~~v~~~~G~~vtL~C~~~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   84 (114)
T 1u9k_A            6 EERYDLVEGQTLTVKCPFNIMK-YANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   84 (114)
T ss_dssp             CEEEEECTTCCEEEEEECCHHH-HTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CccEEEeCCCcEEEEeEecCcc-cCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCC
Confidence            4567899999999999975321 1123689998753322211211 0         124544432   1   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        85 ~~Dsg~Y~C~~~~   97 (114)
T 1u9k_A           85 VTDSGLYRCVIYH   97 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             hHHCEEEEEEEec
Confidence            9999999999876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.49  E-value=4.9e-05  Score=68.48  Aligned_cols=64  Identities=13%  Similarity=0.087  Sum_probs=43.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+|+++.|.|.....+   .+.+.|+.++..     +.  ...........|.|.+|+.+|+|.|.|.+.+
T Consensus       115 ~~v~~G~~v~L~C~~~~~~---~~~~~W~k~g~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  178 (218)
T 1uct_A          115 LVLMPGENISLTCSSAHIP---FDRFSLAKEGEL-----SL--PQHQSGEHPANFSLGPVDLNVSGIYRCYGWY  178 (218)
T ss_dssp             SEECTTCCCEEEEECSSSC---CSEEEEEETTCS-----SC--CSEEECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CccCCCCCEEEEEeCCCCC---CCEEEEEECCCc-----cc--ccccCCCccCEEEEccCCcccCEEEEEEEEc
Confidence            4678999999999432222   247899988754     21  1111111234589999999999999999975

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=97.48  E-value=0.00022  Score=64.09  Aligned_cols=74  Identities=14%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeecCc------eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~~G------LlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......|.|+.+....+...+-.            ...+|+....++      |.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGY-TFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR   87 (230)
T ss_dssp             CEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEeecc-eecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            4678899999999998642 12224799988754333221210            112355443322      9999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus        88 ~~DsG~Y~C~~~~  100 (230)
T 3n9g_H           88 SEDTAVYYCARDW  100 (230)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             hhhCEEEEEEEcc
Confidence            9999999999875

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.48  E-value=0.00018  Score=66.61  Aligned_cols=76  Identities=16%  Similarity=0.065  Sum_probs=50.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.|.|+.+........|. .           ..++|+....+      -|.|.++
T Consensus       142 ~~~~v~~G~~v~L~C~~~g~~~-~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  220 (276)
T 3auv_A          142 GGGLVQPGGSLRLSCAASGFTI-SDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSL  220 (276)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceEecCCCeEEEEEEecCccC-CCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCC
Confidence            4567889999999999874321 12579999875321111110 0           11335544432      4999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.|.
T Consensus       221 ~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          221 RAEDTAVYYCARFVF  235 (276)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ChhHCEEEEEEEEcC
Confidence            999999999999885

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.48  E-value=0.00033  Score=70.38  Aligned_cols=85  Identities=20%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|...+.+   .+.|+|+.+........+..       ..++|+.....    .|.|.+++.+|+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            8 PSASGTPGQRVTISCTGTSSG---SITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             CceEEecCCcEEEEEEEeccC---CceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            457889999999999986543   35799998753211111110       01234433222    39999999999999


Q ss_pred             EEEEeCCee------eEEEeeeecc
Q psy10772        349 YDCWLGNTV------LCTHNLTVDA  367 (378)
Q Consensus       349 Y~C~~~~~~------l~~~~~~v~~  367 (378)
                      |.|.+.+..      -....|+|..
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~  109 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLG  109 (523)
T ss_pred             EEEEEccCCCccccccCceEEEecc
Confidence            999999732      1345666743

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.48  E-value=0.00022  Score=57.71  Aligned_cols=74  Identities=24%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc---CcceE-e-----e---cCceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS---DKFIR-T-----V---DGGLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~---~~~~~-~-----~---~~GLlI~~v~~~Ds  346 (378)
                      .+.+.+.+|+++.|+|......  +.+.|.|+.+... .+.-+....   ..|+. .     .   .--|.|.+|+.+|+
T Consensus        14 p~~~~~~~G~~v~L~C~~~~~~--~~~~v~W~r~~~~-~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   90 (120)
T 2yz1_A           14 EKSVSVAAGDSTVLNCTLTSLL--PVGPIKWYRGVGQ-SRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDA   90 (120)
T ss_dssp             SSEEEECTTCCEEECCEESCCC--SCCCEEEEESSST-TCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGC
T ss_pred             CceEEEeCCCCEEEEeEECCCC--CCcEEEEEcCCCC-CcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHC
Confidence            4567899999999999986431  2347999987522 111121101   01211 0     0   12499999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        91 G~Y~C~~~~   99 (120)
T 2yz1_A           91 GTYYCVKFQ   99 (120)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.48  E-value=0.0001  Score=72.38  Aligned_cols=69  Identities=13%  Similarity=-0.038  Sum_probs=52.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.|+|++++..     +.  +        .|-++ +++.+|+|.|.|.+.|   .
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~---p~i~W~~~g~~-----~~--~--------~g~~~-~v~~~d~G~Y~C~a~N~~G~  438 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPL---PELKCLKDGTF-----PL--P--------IGESV-TVTRDLEGTYLCRARSTQGE  438 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESC---CEEEEEETTTE-----EC--C--------TTSCE-ECCGGGCEEEEEEEEETTEE
T ss_pred             CceeEcCCCeEEEEEecccCCC---CcEEEEECCcc-----cC--C--------CCCeE-eEehhhCeEEEEEEEeCCCc
Confidence            4578889999999999876554   68999988652     21  1        23223 7899999999999998   6


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-++..|.|.+
T Consensus       439 ~~~~~~l~V~~  449 (450)
T 1z7z_I          439 VTREVTVNVLS  449 (450)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eeEEEEEEEEc
Confidence            67777787764

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=97.47  E-value=0.00047  Score=55.97  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------eccCcceEee---cC---ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------FRSDKFIRTV---DG---GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~~~~~~~~~~---~~---GLlI~~v~~~D  345 (378)
                      ..+.+.+|+++.|.|.......  ...+.|+.+...++...|-        ....+|+...   ..   -|.|.+++.+|
T Consensus         7 ~~~~v~~G~~vtL~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~D   84 (117)
T 3bp6_A            7 AWLTVSEGANATFTCSLSNWSE--DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (117)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT--TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CcEEEeCCCCEEEEeEeecCCC--CCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHH
Confidence            4578899999999999864321  2469999875432221121        1123455442   22   29999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|...+
T Consensus        85 sg~Y~C~~~~   94 (117)
T 3bp6_A           85 SGIYLCGAIS   94 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.47  E-value=0.00011  Score=64.61  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce-EeecCceEEeeecCCCCeEEEEEeC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI-RTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~-~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+|+++.|.|....+    .+.+.|+.++........   ..... ......|.|.+++.+|+|.|.|.+.
T Consensus        17 ~~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~~~~~~~---~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDVM----FEHFLLHREGMFNDTLRL---IGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             SEEETTCCEEEEEEESSC----CSEEEEEEESSSCEEEEE---ECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CccCCCCcEEEEEeccCC----CCEEEEEECCCcCCccee---eeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            467889999999998532    247999988764211000   00000 1123459999999999999999984

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.47  E-value=0.00028  Score=63.82  Aligned_cols=74  Identities=16%  Similarity=0.052  Sum_probs=48.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e----------ccCcceEeec------CceEEeeecCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F----------RSDKFIRTVD------GGLVIMAVEEL  344 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~----------~~~~~~~~~~------~GLlI~~v~~~  344 (378)
                      ..+.+|+++.|.|...+.+. +.+.|.|+.+........|. .          ..+.|+....      .-|.|.+|+.+
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~-~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  210 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSI-TSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE  210 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceecCCCeEEEEEEEEcccc-CCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcC
Confidence            45888999999999875431 22579999874321111110 0          0133444332      14999999999


Q ss_pred             CCeEEEEEeCCe
Q psy10772        345 DAGKYDCWLGNT  356 (378)
Q Consensus       345 DsG~Y~C~~~~~  356 (378)
                      |+|.|.|.+.|.
T Consensus       211 D~G~Y~C~a~~~  222 (242)
T 2znx_A          211 DTATYYCANXDG  222 (242)
T ss_dssp             GCEEEEEEETTS
T ss_pred             cCEEEEEeccCC
Confidence            999999999873

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.47  E-value=7.8e-05  Score=63.84  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCee-e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV-L  358 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~-l  358 (378)
                      ..+.+.+|+++.|.|.....+.  ...++|+.++..     +.  .      ...-|.|.+++..|+|.|.|.+.+.. -
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~-----~~--~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s   76 (176)
T 1f2q_A           12 PWNRIFKGENVTLTCNGNNFFE--VSSTKWFHNGSL-----SE--E------TNSSLNIVNAKFEDSGEYKCQHQQVNES   76 (176)
T ss_dssp             SCSEEETTCCEEEECCTTCC------CCEEEETTEE-----CS--C------CSSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCcceecCCcEEEEEeCCCCCC--cceEEEEECCeE-----CC--C------CceEEEEeccceecCEEEEEEcCCcccc
Confidence            3457889999999999854432  125899887643     32  1      24568999999999999999998722 2


Q ss_pred             EEEeeeec
Q psy10772        359 CTHNLTVD  366 (378)
Q Consensus       359 ~~~~~~v~  366 (378)
                      ....|.|.
T Consensus        77 ~~~~l~V~   84 (176)
T 1f2q_A           77 EPVYLEVF   84 (176)
T ss_dssp             CCEEEEEE
T ss_pred             ccEEEEEe
Confidence            33444444

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=97.47  E-value=0.00033  Score=57.88  Aligned_cols=75  Identities=21%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeec---C---ceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      ..+.+.+|+++.|+|.....+ .....+.|+.+...++...|- ..          ..+|+....   .   -|.|.+++
T Consensus         8 ~~~~~~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   86 (124)
T 1yc7_A            8 GGGSVQAGGSLRLSCAVSGST-YSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQ   86 (124)
T ss_dssp             CCEEECTTCCEEEEEEEESCC-SSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCCEEEEEEEeCCC-cCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            356788999999999986321 122469999876433322221 11          123544432   1   29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        87 ~~Dsg~Y~C~~~~   99 (124)
T 1yc7_A           87 REDTGMYYCQIQC   99 (124)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.47  E-value=0.00012  Score=68.20  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|..... .++.+.+.|+.+........+..            ....|+....+      -|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            8 GAEVKKPGSSVKVSCTSSEV-TFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCEECTTCCEEEEEEECCS-CCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCEEECCCCcEEEEEEeecc-CCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            45678899999999998642 23345799987542211100100            11235554433      3999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           87 RSEDTAVYYCARSPS  101 (280)
T ss_dssp             CSTTCEECCEEECSS
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999875

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=97.46  E-value=0.00072  Score=57.84  Aligned_cols=94  Identities=22%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecc---cCceeeEee----------c--cCcceEee--c----CceEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSK---DKGRYQIKF----------R--SDKFIRTV--D----GGLVI  338 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~---~~~~~~l~~----------~--~~~~~~~~--~----~GLlI  338 (378)
                      +.+.+.+|+++.|.|......  ....+.|+.+..   .++..-|-.          .  ..+|+...  .    --|.|
T Consensus         9 ~~~~v~~G~svtL~C~~s~~~--~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I   86 (150)
T 3dmm_D            9 SSLLVQTNHTAKMSCEVKSIS--KLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   86 (150)
T ss_dssp             SEEEEETTSCEEEEEECCCSS--CCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSSCEEEE
T ss_pred             CeEEEeCCCcEEEEEEecCCC--CCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCEEEEEE
Confidence            467889999999999986431  223689998753   122111210          0  13455543  1    23999


Q ss_pred             eeecCCCCeEEEEEeCCeeeEEE----eeeecccccCCCCCC
Q psy10772        339 MAVEELDAGKYDCWLGNTVLCTH----NLTVDAHSNVADAPT  376 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~~~l~~~----~~~v~~~~c~~~~~~  376 (378)
                      .+++.+|+|.|.|......-..|    .|+|.+.--+.| ||
T Consensus        87 ~~l~~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~~lp~t~-Pt  127 (150)
T 3dmm_D           87 MNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTA-PT  127 (150)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEECCCEEEEEESCCCCCC-C-
T ss_pred             CCCChhhCEEEEEEEecCCcceECCCEEEEEeCCCCCCC-Cc
Confidence            99999999999999865221122    677776544444 44

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.46  E-value=0.00033  Score=63.16  Aligned_cols=76  Identities=20%  Similarity=0.383  Sum_probs=50.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------c-cCcceEee-cC-----ceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------R-SDKFIRTV-DG-----GLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~-~~~~~~~~-~~-----GLlI~~v  341 (378)
                      .+.+.+.+|+++.|.|...... +..+.|.|+.+....+..-|..          . ..+|+... +.     -|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (230)
T 1ypz_F            8 EISISRPRDETAQISCKVFIES-FRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (230)
T ss_dssp             CSEEEEETTSCEEEEEEECCGG-GGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCEEEEeCCCcEEEEEEeeccc-cCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence            4567889999999999986431 1234799998753222111110          0 23455443 22     3999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|...+
T Consensus        87 ~~~D~G~Y~C~~~~  100 (230)
T 1ypz_F           87 EEEDEAIYYCSYGE  100 (230)
T ss_dssp             CGGGCSEEEEEECC
T ss_pred             ChhhCEEEEEEEEC
Confidence            99999999999986

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.46  E-value=0.00026  Score=65.82  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+ .+.+.|.|+.+........|..            ..++|+....      .-|.|.+|
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFN-IKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEeCCCeEEEEEeccCCC-CCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            457889999999999986432 1235799998753221111100            1124544332      23999999


Q ss_pred             cCCCCeEEEEEeCCee----e----EEEeeeeccc
Q psy10772        342 EELDAGKYDCWLGNTV----L----CTHNLTVDAH  368 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~----l----~~~~~~v~~~  368 (378)
                      +.+|+|.|.|.+.+..    .    ....|+|...
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~  147 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSG  147 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecC
Confidence            9999999999997642    1    2236777654

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=97.46  E-value=0.0004  Score=57.45  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|...... .....+.|+.+...++...|-..       ..+|+....    --|.|.+++.+|+|.
T Consensus         8 ~~v~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~   86 (123)
T 3t0v_A            8 PSVSGTPGQKVTIFCSGSSSN-VEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDEAD   86 (123)
T ss_dssp             CCEEECTTCCEEEEEECCTTT-TTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEecCCCc-cCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHHCEE
Confidence            357889999999999986432 12247999987543332212111       123444321    239999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|...+
T Consensus        87 Y~C~~~~   93 (123)
T 3t0v_A           87 YYCLSWD   93 (123)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999864

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.46  E-value=0.0002  Score=64.52  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeec------CceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVD------GGLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~------~GLlI~~v~~  343 (378)
                      ..+.+|+++.|.|...+.+ .+.+.+.|+.+........|. .           ..++|+....      .-|.|.+++.
T Consensus       137 ~~v~~G~~v~L~C~~~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  215 (247)
T 1svz_A          137 ELKKPGETVKISCKATNYA-FTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN  215 (247)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEEcCcc-cCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence            4588899999999986542 122479999875321111010 0           0134444332      1499999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.|.
T Consensus       216 ~DsG~Y~C~a~n~  228 (247)
T 1svz_A          216 EDTATYFCVRDRH  228 (247)
T ss_dssp             GGCEEEEEEEEEG
T ss_pred             hHCEEEEEEEecc
Confidence            9999999999873

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=97.46  E-value=0.00089  Score=53.84  Aligned_cols=89  Identities=20%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEec-cc-CceeeEe-e-------ccCcceEee---cC---ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYS-KD-KGRYQIK-F-------RSDKFIRTV---DG---GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~-~~-~~~~~l~-~-------~~~~~~~~~---~~---GLlI~~v~  342 (378)
                      .+.+.+.+|+++.|+|...... .....+.|+.+. .. ++...|- .       +.+.|+...   ..   -|.|.+|+
T Consensus         3 ~~~v~~~~G~~vtL~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   81 (116)
T 3bia_X            3 EDTIIGFLGQPVTLPCHYLSWS-QSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTN   81 (116)
T ss_dssp             CEEEEEETTSCEEECCBCTTCC-TTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCC
T ss_pred             ccEEEEeeCCcEEEEEEeeCCC-CCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCC
Confidence            4567899999999999875211 112258999876 32 1111111 0       112233322   12   39999999


Q ss_pred             CCCCeEEEEEeCC-----eeeEEEeeeeccc
Q psy10772        343 ELDAGKYDCWLGN-----TVLCTHNLTVDAH  368 (378)
Q Consensus       343 ~~DsG~Y~C~~~~-----~~l~~~~~~v~~~  368 (378)
                      .+|+|.|.|....     +......|.|...
T Consensus        82 ~~Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~~  112 (116)
T 3bia_X           82 RGDSGVYCCRIEVPGWFNDVKKNVRLELRRA  112 (116)
T ss_dssp             GGGCEEEEEEEECSSSSCCEEEEEEEEEECC
T ss_pred             hhHCEEEEEEEEcCCcccceEEEEEEEEecC
Confidence            9999999999853     3345566666554

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=97.45  E-value=5.1e-05  Score=60.75  Aligned_cols=61  Identities=20%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--eecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|++|.|.|....+.    ..+.|+.++..     +.  . .+..  ....-|.|.+|+.+|+|.|.|.+.+
T Consensus        15 ~v~~G~~VtL~C~~~~~~----~~~~w~k~g~~-----~~--~-~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n   77 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRMA----AWVQLWLNGTL-----RF--D-KEKDKEQDAAEFSFAVTNLEDAGTYQCRYQV   77 (105)
T ss_dssp             SCCTTCEEEEEEECCSSC----EEEEEEETTEE-----EE--E-EEECTTCSEEEEEEECCSGGGCEEEEEEEEE
T ss_pred             CcCcCCCEEEEEEcCCCC----cEEEEEECCcc-----ce--e-eeccCCCCEEEEEECCCCHHHCeEEEEEEEc
Confidence            467799999999985432    25678766532     21  0 1110  1123489999999999999999876

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=97.45  E-value=0.0002  Score=73.02  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceee-Eee----ccCcceEeecC-ceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQ-IKF----RSDKFIRTVDG-GLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~-l~~----~~~~~~~~~~~-GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+.+..|+++.|.|....  ..+.+.|+|+.++.+..... +..    .-+.|.....+ .|.|.+|+.+|+|.|.|.
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAP--KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCC--SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEE
T ss_pred             hcccceecCCcEEEeeeecC--CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEE
Confidence            45678999999999998721  13345899999875311000 000    00223333444 499999999999999999


Q ss_pred             eCC---e-eeEEEeeeecc
Q psy10772        353 LGN---T-VLCTHNLTVDA  367 (378)
Q Consensus       353 ~~~---~-~l~~~~~~v~~  367 (378)
                      +.+   . ......|+|..
T Consensus       451 ~~n~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEB
T ss_pred             EEcCCCceeEEEEEEEEEc
Confidence            987   2 25667888765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=97.45  E-value=0.00018  Score=65.71  Aligned_cols=78  Identities=23%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+..|+++.|.|.. +.+. +.+.|.|.......++  +      +......-|.|.+|+.+|+|.|.|.+.+   +
T Consensus        15 ~~v~v~~G~sv~L~C~a-~~p~-P~~~i~W~~~~~~l~~--~------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A           15 PVVAVALGASRQLTCRL-ACAD-RGASVQWRGLDTSLGA--V------QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             SEEEEETTCCEEEEEEE-CCSS-TTCEEEEESSTTTTCC--E------EEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEEeCCCCEEEEEEC-CCCC-CCcceEEeecccccCc--E------EecCCccEEEECccCcccCceEEEEEEeCCCc
Confidence            34788999999999998 4433 2227999764332111  1      1111223389999999999999999987   4


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-.+..|+|-.
T Consensus        85 ~~~~~~ltV~~   95 (210)
T 1gsm_A           85 FQHTVQLLVYA   95 (210)
T ss_dssp             EEEEEEEEEEB
T ss_pred             eEEEEEEEEEe
Confidence            44567777764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=97.44  E-value=0.00045  Score=62.65  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCC--CCCeEEEEecccCceeeE-eec----------------cCcceEeecCc-----
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMA--NQPMSWYHYSKDKGRYQI-KFR----------------SDKFIRTVDGG-----  335 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La--~~~v~W~~~~~~~~~~~l-~~~----------------~~~~~~~~~~G-----  335 (378)
                      ..+.+.+|+++.|.|.....+ ..  ...|.|+.+...++...| ...                ..+|+....++     
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDS-TAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSC-TTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCc-ccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            346788999999999986432 21  236899987543222111 001                12455444322     


Q ss_pred             -eEEeeecCCCCeEEEEEeCCe
Q psy10772        336 -LVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       336 -LlI~~v~~~DsG~Y~C~~~~~  356 (378)
                       |.|.+|+.+|+|.|.|.+.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~  108 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGG  108 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecC
Confidence             999999999999999998754

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.44  E-value=0.00015  Score=61.75  Aligned_cols=61  Identities=18%  Similarity=0.276  Sum_probs=44.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.   | .++|+.++..     +.  ...   ....-|.|.++  .|+|.|.|.+.|
T Consensus       106 ~~~~~~~g~~~~l~C~~~g~p~---p~~v~W~~~~~~-----~~--~~~---~~~~~L~i~~~--~d~G~Y~C~a~N  167 (182)
T 1rhf_A          106 KDLAVPPNAPFQLSCEAVGPPE---PVTIVWWRGTTK-----IG--GPA---PSPSVLNVTGV--TQSTMFSCEAHN  167 (182)
T ss_dssp             CCEEECTTCCEEEEEEEECSSS---CCEEEEEETTEE-----CS--CSE---ESSEEEEECCC--SSCEEEEEEEEE
T ss_pred             cceEecCCCEEEEEeEecCCCC---CCEEEEEcCCeE-----CC--CCC---CCceEEEEecc--ccCeEEEEEEEC
Confidence            3467888999999999876544   5 7999998754     31  111   13445777777  599999999997

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.44  E-value=1.9e-05  Score=82.83  Aligned_cols=78  Identities=21%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCC---
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+|+++.|.|...+.+.   |.|+|+.++.+     |.  .+.++...  ..-|.|.+++.+|+|.|.|.+.|   
T Consensus       675 ~~~v~~g~~~~l~C~~~g~P~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  744 (772)
T 3v2a_R          675 NQTTSIGESIEVSCTASGNPP---PQIMWFKDNET-----LV--EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG  744 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEeCCCCEEEEEEeCccCC---CeEEEEECCeE-----Cc--CCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCc
Confidence            356778999999999875443   58999998765     43  33333322  34499999999999999999998   


Q ss_pred             eeeEEEeeeeccc
Q psy10772        356 TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ~~l~~~~~~v~~~  368 (378)
                      ..-++-.|+|.+.
T Consensus       745 ~~~~~~~l~V~~~  757 (772)
T 3v2a_R          745 CAKVEAFFIIEGA  757 (772)
T ss_dssp             -------------
T ss_pred             ceeEEEEEEEECC
Confidence            4556777777654

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=97.44  E-value=0.00028  Score=58.31  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|- ..           ..+|+....   +   -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (127)
T 2x1q_A            9 GGLVQPGGSLRLSCAASGR-TFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLE   87 (127)
T ss_dssp             CEEECTTCCEEEEEC-------CCSEEEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEeCCc-ccCCcEEEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEEEEEEcCCC
Confidence            4678899999999997532 1122469999885433322121 11           123554432   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (127)
T 2x1q_A           88 PEDTAVYYCAASS  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.44  E-value=0.00016  Score=64.35  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|...+.+. +...|.|+.+........+..       ...+|+....    ..|.|.+++.+|+|.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           27 PSASGTPGQRVTISCSGSSSNI-GSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             SCCCBCTTCEEEEEEECCTTTT-TTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CcEEeeCCCcEEEEEEecCCCC-CCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            4556788999999999865322 111599998743211111110       0123433321    149999999999999


Q ss_pred             EEEEeCCe
Q psy10772        349 YDCWLGNT  356 (378)
Q Consensus       349 Y~C~~~~~  356 (378)
                      |.|.+.+.
T Consensus       106 Y~C~~~~~  113 (234)
T 2j6e_L          106 YYCATWDD  113 (234)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEcC
Confidence            99999863

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=97.44  E-value=0.00044  Score=63.02  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeec-----CceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVD-----GGLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~-----~GLlI~~v~~  343 (378)
                      .+.+.+.+|+++.|.|....+    .+.|.|+.+...++..-|..          ....|+....     .-|.|.+++.
T Consensus        10 p~~v~v~~G~~v~L~C~~~~~----~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   85 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQNLN----HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   85 (252)
T ss_dssp             CSEEEEETTCCEEECCEECSC----CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             CCeEEEcCCCcEEEEEEeCCC----CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCCh
Confidence            456789999999999998432    25799998753222111111          0123544432     2499999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.+.
T Consensus        86 ~D~G~Y~C~~~~~   98 (252)
T 1oga_E           86 NPTAFYLCASSSR   98 (252)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             hhCEEEEEEEecC
Confidence            9999999998763

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=97.44  E-value=0.00028  Score=57.45  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....|.|+.+...++...|-. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (120)
T 1mfa_H            9 TVVARPGASVKMSCKASGYT-FTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEeCCCCEEEEEEeeCcc-ccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            46788999999999986321 1224699998754332221210 0           123554432   2   29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (120)
T 1mfa_H           88 SEDSAVYYCTRGG  100 (120)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999865

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=97.43  E-value=5.9e-05  Score=66.46  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCC--CCCCCeEEEEecccCceee------EeeccCcceEee-------cCceEEeeecCCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPAS--MANQPMSWYHYSKDKGRYQ------IKFRSDKFIRTV-------DGGLVIMAVEELD  345 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~--La~~~v~W~~~~~~~~~~~------l~~~~~~~~~~~-------~~GLlI~~v~~~D  345 (378)
                      .+.+.+|+++.|.|.....+.  ...+.|.|+.++.......      ......+|+...       ...|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456788999999999765532  2234789998764310000      001112333332       3449999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|.+.+
T Consensus        84 ~G~Y~C~~~~   93 (222)
T 4i0k_A           84 EGSYTCFVSI   93 (222)
T ss_dssp             CSCEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999985

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.42  E-value=0.00015  Score=63.73  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=48.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceE----EeeecCCCCeEEEEEeCC---
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLV----IMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLl----I~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+|+++.|.|...+.+.   |.|+|+.++..    .+.......+....+|++    +..++..|+|.|.|.+.|   
T Consensus       127 ~~~~g~~v~L~C~~~g~P~---p~i~W~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g  199 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPK---AEVIWTSSDHQ----VLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP  199 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSC---CEEEEEETTCC----EECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTT
T ss_pred             eecCCCcEEEEEEecCCCC---CeEEEEECCCc----eecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcc
Confidence            5667999999999876433   68999987332    121000001122334432    235678999999999987   


Q ss_pred             eeeEEEeeeecccc
Q psy10772        356 TVLCTHNLTVDAHS  369 (378)
Q Consensus       356 ~~l~~~~~~v~~~~  369 (378)
                      ..-++..|.|.+..
T Consensus       200 ~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          200 EENHTAELVIPELP  213 (222)
T ss_dssp             TEEEEEEEECCCC-
T ss_pred             ceeeEEEEEecCCc
Confidence            45567777776544

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.42  E-value=0.00031  Score=64.44  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC----------c-ceEeec-----CceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD----------K-FIRTVD-----GGLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~----------~-~~~~~~-----~GLlI~~v~  342 (378)
                      .+.+.+.+|+++.|.|....+    .+.|.|+.+........+....+          + |+....     .-|.|.+|+
T Consensus        34 p~~v~v~~G~~v~L~C~~~~~----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~  109 (270)
T 3qib_D           34 PRYLVKGQGQKAKMRCIPEKG----HPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSE  109 (270)
T ss_dssp             CSEEEEETTSCEEEEEECCTT----CCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCC
T ss_pred             CCeEEEcCCCCEEEEEEecCC----CceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCC
Confidence            455789999999999987542    34799987543222111110000          0 433321     139999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|.+.+
T Consensus       110 ~~D~G~Y~C~~~~  122 (270)
T 3qib_D          110 AGDSALYLCASSL  122 (270)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             HhHCeEEEEEEec
Confidence            9999999999974

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=97.42  E-value=0.0004  Score=58.57  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|- ..           ..+|+....   +   -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   87 (137)
T 1rjc_A            9 GGSVQAGQSLRLSCATSGA-TSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK   87 (137)
T ss_dssp             CEEECTTCCEEEEEECC-C-TTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred             CEEEecCCCEEEEEEecCC-cCCCcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            4678899999999998532 1223469999886433322121 10           123555442   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (137)
T 1rjc_A           88 PEDTAMYYCAADT  100 (137)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999999875

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=97.42  E-value=0.00042  Score=57.16  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec----------cCcceEeec-----CceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR----------SDKFIRTVD-----GGLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~----------~~~~~~~~~-----~GLlI~~v~~  343 (378)
                      .+.+.+.+|+++.|.|.......   ..+.|+.+...++..-|-..          ..+|+....     --|.|.+++.
T Consensus        12 p~~~~v~~G~~vtL~C~~~~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~   88 (125)
T 3r8b_B           12 PRNKVAVTGEKVTLSCKQTNSYF---NNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELATP   88 (125)
T ss_dssp             CSEEEEETTCCEEEEEEEESCCC---SEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTCCG
T ss_pred             CCeEEEcCCCcEEEEEEECCCCC---CeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCCCh
Confidence            45678899999999999864322   36899987543332212110          123443321     1299999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|....
T Consensus        89 ~Dsg~Y~C~~~~  100 (125)
T 3r8b_B           89 SQTSVYFCASGG  100 (125)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hhCEEEEEEEcC
Confidence            999999998753

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=97.42  E-value=0.00024  Score=58.61  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e----------------ccCcceEeec---C---ceE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F----------------RSDKFIRTVD---G---GLV  337 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~----------------~~~~~~~~~~---~---GLl  337 (378)
                      .+.+.+|+++.|.|...... .....|.|+.+...++...|- .                ...+|+....   .   -|.
T Consensus         9 ~~~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~   87 (127)
T 1i3u_A            9 GGLVQAGDSLKLSCEASGDS-IGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CEEEeCCCcEEEEEEecCCC-cCCcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcCCCCEEEEE
Confidence            46778899999999986321 112469999875433221121 0                0123555442   2   399


Q ss_pred             EeeecCCCCeEEEEEeCC
Q psy10772        338 IMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       338 I~~v~~~DsG~Y~C~~~~  355 (378)
                      |.+++.+|+|.|.|...+
T Consensus        88 I~~~~~~Dsg~Y~C~~~~  105 (127)
T 1i3u_A           88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             ECCCChhhCEEEEEEEEc
Confidence            999999999999999865

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=97.41  E-value=0.00034  Score=64.89  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e----------ccCcceEeecCc------eEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F----------RSDKFIRTVDGG------LVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~----------~~~~~~~~~~~G------LlI~~v~~  343 (378)
                      .+++.+|+++.|.|...... .....|.|+.+...++...|. .          ...+|+....++      |.|.+|+.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (263)
T 3iu4_H            9 PGLVAPSQSLSITCTVSGFS-LSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQT   87 (263)
T ss_dssp             CSEECTTSCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEecccc-CCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCH
Confidence            46788999999999986321 222479998875332211120 0          112454443222      99999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|...+
T Consensus        88 ~DsG~Y~C~~~~   99 (263)
T 3iu4_H           88 DDTAMYYCARSG   99 (263)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             HHCEEEEEEEEe
Confidence            999999999875

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.41  E-value=0.00011  Score=65.31  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+|+++.|.|.+  |    .+.++|+.++.+     |.  ..   .....-|.|.+++.+|+|.|.|.+.+.
T Consensus        16 ~~G~~v~L~C~~--p----~~~i~W~k~g~~-----l~--~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           16 QEDGSVLLTCDA--E----AKNITWFKDGKM-----IG--FL---TEDKKKWNLGSNAKDPRGMYQCKGSQN   71 (204)
T ss_dssp             CSSSEEEEEECS--C----SSEEEEEETTEE-----EE--EE---ESSCCCEEEEEGGGCCEEEEEEESSSS
T ss_pred             cCCCeEEEEEcC--C----CCEEEEEECCEE-----CC--CC---CCCCCeEEeCCCCcCCCEEEEEEecCC
Confidence            479999999987  2    247999987653     43  11   012345999999999999999998763

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.41  E-value=0.00017  Score=64.78  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+.+.  ...++|+.++..     |.  .      ...-|.|.+++..|+|.|.|.+.+
T Consensus         9 ~~~~v~~G~~v~l~C~~~~~~~--~~~~~W~~~g~~-----~~--~------~~~~l~i~~~~~~d~G~Y~C~~~~   69 (262)
T 3rjd_A            9 PWVSVFQEETVTLHCEVLHLPG--SSSTQWFLNGTA-----TQ--T------STPSYRITSASVNDSGEYRCQRGL   69 (262)
T ss_dssp             CCSEEETTCCEEEEEECSSCCC--TTCEEEEETTEE-----CS--C------CSSEEEESSCCGGGCEEEEEEESS
T ss_pred             CcEEeeCCCeEEEEEECCCCCC--CceEEEEECCEE-----ee--c------cCCeEEEecCCcccCeEEEEEEec
Confidence            3457889999999999865433  127999987653     32  1      145688999999999999999987

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.41  E-value=0.00016  Score=66.21  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCc-eeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKG-RYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~-~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      ..+.+|+++.|.|...+++.  ++.+.|+.++.... ...... ...+ .....-|.|.+++.+|+|.|.|.+.|   ..
T Consensus       196 ~~~~~g~~v~l~C~~~~~~~--~~~~~w~~~~~~~~~~~~~~~-~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          196 LVRIRGEAAQIVCSASSVDV--NFDVFLQHNNTKLAIPQQSDF-HNNR-YQKVLTLNLDQVDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             BCCCSSSCEEEEEEEEESSS--CCEEECCBSSCCCCCCBEEEE-ETTE-EEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             eeEecCCCEEEEEEecCCCC--ceEEEEeCCCcccccCcccee-ccce-eeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence            34568999999999975442  23456665544210 000000 0111 11233599999999999999999988   66


Q ss_pred             eEEEeeeecccc
Q psy10772        358 LCTHNLTVDAHS  369 (378)
Q Consensus       358 l~~~~~~v~~~~  369 (378)
                      -++..|+|.+..
T Consensus       272 ~~~~~l~V~~~~  283 (292)
T 4dkd_C          272 STSMFFRVVESA  283 (292)
T ss_dssp             EEEEEECC----
T ss_pred             eeEEEEEEeeCC
Confidence            777888887653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=97.41  E-value=0.00011  Score=68.99  Aligned_cols=65  Identities=15%  Similarity=0.296  Sum_probs=39.2

Q ss_pred             EEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc-------eEEeeecCCCCeEEEEEeCC
Q psy10772        284 VTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-------LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G-------LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+|+++.|.|...+ ++.  ...|+|+.++.+     |.......+....+|       |.|..++..|+|.|.|.+.|
T Consensus       232 ~~~G~~v~l~C~~~g~~p~--~~~v~W~k~g~~-----l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N  304 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQ--RLQLTWLENGNV-----SRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH  304 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSS--CEEEEEEETTEE-----EEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEE
T ss_pred             cCCCCcEEEEEEEccccCC--CcEEEEEECCeE-----ccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEe
Confidence            568999999999976 322  116999998764     331111223334444       77888889999999999998

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.41  E-value=0.00014  Score=66.63  Aligned_cols=65  Identities=18%  Similarity=0.350  Sum_probs=45.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+.+|+++.|.|...+       .|+|+.++.+... .+....+..   ...-|.|.+++.+|+|.|.|.+.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-------~v~W~~~~~~~~~-~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n   72 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSA-------PVVWERMSQEPPQ-EMAKAQDGT---FSSVLTLTNLTGLDTGEYFCTHND   72 (289)
T ss_dssp             SEEECCTTCCEEEEEEESS-------CCEEEBTTBCCSE-EEEECTTSC---EEEEEEECSCCGGGCEEEEEECCC
T ss_pred             CeEEEeCCCcEEEEEeccc-------eEEEECCCCCccc-ceeccCCCc---eeEEEEEccCChhhCEEEEEEEcc
Confidence            4567888999999999742       2899998765211 011001110   123489999999999999999987

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.41  E-value=0.0002  Score=74.59  Aligned_cols=77  Identities=26%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecC---ceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDG---GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~---GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+...+.+|+++.|.|.+.+-+.   |.|+|+.++++     |.  .+.++. ..++   -|.|.++...|+|.|.|.+.
T Consensus       489 ~~~~~v~~G~~~~~~~~v~g~P~---P~v~W~k~~~e-----l~--~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~  558 (573)
T 3uto_A          489 PYGTEVGEGQSANFYCRVIASSP---PVVTWHKDDRE-----LK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK  558 (573)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSC---CEEEEEETTEE-----CC--SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCcEEeCCCcEEEEEEEEccCC---CeEEEEECCEE-----cc--cCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEE
Confidence            35567889999999999875544   79999988764     43  333332 2223   38999999999999999999


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      |   ..-+.-+|+|
T Consensus       559 N~~G~~~~~v~l~V  572 (573)
T 3uto_A          559 NSYGTKEEIVFLNV  572 (573)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEE
Confidence            8   4444444443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.40  E-value=0.00048  Score=68.67  Aligned_cols=94  Identities=12%  Similarity=0.047  Sum_probs=59.3

Q ss_pred             ccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------
Q psy10772        273 CESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------  334 (378)
Q Consensus       273 C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------  334 (378)
                      |+.......+.+.+|+++.|.|.....+ ...+.|.|+.+...++...|. .           ...+|+....+      
T Consensus         2 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   80 (475)
T 1iga_A            2 VKLLEQSGAEVKKPGASVKVSCKASGYS-FTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTA   80 (475)
T ss_pred             cceeccCCcEEEeCCCCEEEEEEecCCC-CCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeE
Confidence            4433345678899999999999986432 223479999874322211110 0           01235443321      


Q ss_pred             ceEEeeecCCCCeEEEEEeCCee---------eEEEeeeecc
Q psy10772        335 GLVIMAVEELDAGKYDCWLGNTV---------LCTHNLTVDA  367 (378)
Q Consensus       335 GLlI~~v~~~DsG~Y~C~~~~~~---------l~~~~~~v~~  367 (378)
                      -|.|.+++.+|+|.|.|.+.+..         -....|+|..
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           81 YMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             EEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEecc
Confidence            39999999999999999998742         1234677764

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=97.40  E-value=0.00031  Score=56.92  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC--ceeeE-eec-------c---CcceEeecC----ceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK--GRYQI-KFR-------S---DKFIRTVDG----GLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~--~~~~l-~~~-------~---~~~~~~~~~----GLlI~~v~  342 (378)
                      +.+.+.+|+++.|.|......  ....+.|+.+...+  +..-| ...       .   .+|+.....    -|.|.+++
T Consensus         8 ~~v~v~~G~~vtL~C~~~~~~--~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~   85 (114)
T 2hp4_A            8 LDRTWNLGETVELKCQVLLSN--PTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFR   85 (114)
T ss_dssp             CSCCCCTTCCEEEEEEECCSS--CCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEESSCC
T ss_pred             CEEEEcCCCCEEEEEEeecCC--CCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEECCCC
Confidence            345677899999999986332  12479999874322  12112 110       0   235433222    39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        86 ~~Dsg~Y~C~~~~   98 (114)
T 2hp4_A           86 RENEGYYFCSALS   98 (114)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999875

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=97.39  E-value=0.00035  Score=62.56  Aligned_cols=77  Identities=16%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCC-CCCCCeEEEEecccCceeeEee-----------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPAS-MANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~-La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+. ...+.|.|+.+...++...|..           ...+|+....      ..|.|.+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            3467889999999999864321 1014799988753222111110           0123544331      24999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus        88 ~~~D~G~Y~C~~~~~  102 (228)
T 3bae_H           88 DTADTATYYCARRGF  102 (228)
T ss_dssp             CGGGCEEEEEEEEEE
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999864

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=97.38  E-value=0.00072  Score=60.95  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeec---C---ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVD---G---GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~---~---GLlI~~v~~  343 (378)
                      .+.+.+|+++.|.|.....+ +..+.|.|+.+....+...|..           ...+|+....   .   -|.|.+|+.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGS-FSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSC-CSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEEcccc-CCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            45788999999999986432 1235799998753222111110           0134554432   2   499999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|+|.|.|.+.
T Consensus        88 ~D~G~Y~C~~~   98 (232)
T 1dn0_B           88 ADTAVYYCARP   98 (232)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEEEEEe
Confidence            99999999997

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.38  E-value=0.00033  Score=62.83  Aligned_cols=74  Identities=19%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---ee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TV  357 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~  357 (378)
                      ...+.+|+++.|.|.....  .+.+.++|+.++..     +.  .    ......|.|.+++..|+|.|.|.+.+   ..
T Consensus        91 ~~~~~~g~~v~l~C~~~~~--~p~~~v~W~~~g~~-----~~--~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~  157 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKD--KLVYNVLYYRNGKA-----FK--F----FHWNSNLTILKTNISHNGTYHCSGMGKHRYT  157 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGG--CCCEEEEEEETTEE-----EE--E----EEECCCEEESSCCGGGCEEEEEEEESSSEEE
T ss_pred             CeEEecCCeEEEEEEccCC--CCCceEEEEECCcc-----cc--c----cCCCCeEEEEECChhhCEEEEEEEeCCCCcc
Confidence            3457789999999998322  22357999987653     43  1    12356799999999999999999987   33


Q ss_pred             eEEEeeeecc
Q psy10772        358 LCTHNLTVDA  367 (378)
Q Consensus       358 l~~~~~~v~~  367 (378)
                      -....|.|..
T Consensus       158 ~~~~~l~V~~  167 (262)
T 3rjd_A          158 SAGISVTVKE  167 (262)
T ss_dssp             EECEEEEEEC
T ss_pred             ccceEEEecc
Confidence            4445666654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.38  E-value=0.0004  Score=64.46  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-c---CceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-D---GGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~---~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.....+    +.|.|+.+........+..       ..++|+... .   .-|.|.+++.+|+|
T Consensus       169 p~~~~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  244 (282)
T 1qok_A          169 PAIMSASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAA  244 (282)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCEEEEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCE
Confidence            3456788999999999986554    3799998532211101110       012343322 1   13999999999999


Q ss_pred             EEEEEeCCeee----EEEeeeecccc
Q psy10772        348 KYDCWLGNTVL----CTHNLTVDAHS  369 (378)
Q Consensus       348 ~Y~C~~~~~~l----~~~~~~v~~~~  369 (378)
                      .|.|.+.+..-    ..-.|+|....
T Consensus       245 ~Y~C~a~~~~~~~fg~gt~l~V~~~~  270 (282)
T 1qok_A          245 TYYCQQRSSYPLTFGAGTKLELKRAA  270 (282)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEEEEeeCCCceEeCCEEEEEeccc
Confidence            99999986321    23356665443

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=97.38  E-value=0.00028  Score=58.23  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCC-CCeEEEEecccCceeeEee-c----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIKF-R----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~-~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|.....+. .. ..|.|+.+...++...|-. .          ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~s~~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~   87 (127)
T 3cx5_J            9 AGLVQPSQSLSLTCSVTGYSI-TSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVT   87 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCT-TTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEEeCccc-CCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            356888999999999863321 11 3699998754332221211 0          123444332   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (127)
T 3cx5_J           88 TEDTATYYCARSE  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.37  E-value=0.00028  Score=67.40  Aligned_cols=87  Identities=16%  Similarity=0.076  Sum_probs=54.1

Q ss_pred             eeEEEEeCCeeeeeeeeccC-CC-CCCCCeEEEEecccCceeeEeec-cCcceEe------------e--cCceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLP-AS-MANQPMSWYHYSKDKGRYQIKFR-SDKFIRT------------V--DGGLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~-~~-La~~~v~W~~~~~~~~~~~l~~~-~~~~~~~------------~--~~GLlI~~v~  342 (378)
                      +.+.+.+|+++.|.|...+. +. -|.|.++|+.++.+.....+... .+.++..            .  ..-|.|.+++
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            56778899999999976541 11 12357999988754111001100 1222222            1  2259999999


Q ss_pred             CCCCeEEEEEeCCe-----eeEEEeeeec
Q psy10772        343 ELDAGKYDCWLGNT-----VLCTHNLTVD  366 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~-----~l~~~~~~v~  366 (378)
                      ..|+|.|.|.+.|.     .-....|.|.
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            99999999999654     4455555554

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.37  E-value=0.00046  Score=58.12  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=49.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|-. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   87 (136)
T 1zvy_A            9 GGSVQAGGSLRLSCAASGS-TDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   87 (136)
T ss_dssp             CEECCTTCCEEEEEEEESC-STTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEeCCCCEEEEEEecCC-CCCCcEEEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            4677889999999998532 22224699998864333222211 0           124555432   2   29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (136)
T 1zvy_A           88 SEDTAIYTCGATR  100 (136)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             hhHCEEEEEEEEe
Confidence            9999999999875

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=97.37  E-value=0.00032  Score=57.30  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......|.|+.+...++...|- ..           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (122)
T 1xiw_D            9 PELVKPGASMKISCKASGY-SFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLT   87 (122)
T ss_dssp             CEEECTTCCEEEEEEEESS-CGGGEEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEeCCCcEEEEEEeeCc-ccCCCEEEEEEECCCCCcEEEEEEeccCCceeeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            3578899999999998632 1112368999875433222121 11           123554432   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (122)
T 1xiw_D           88 SEDSAVYYCARSG  100 (122)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEec
Confidence            9999999998763

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.37  E-value=0.00051  Score=62.93  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCC--CCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMA--NQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La--~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|...+.+...  .+.|.|+.+........|..       ...+|+....    .-|.|.+++.+|
T Consensus       128 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  207 (256)
T 1nqb_A          128 PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED  207 (256)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHH
Confidence            3456788999999999986543310  03799998532211100100       0123333221    129999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|.+.+
T Consensus       208 sG~Y~C~a~~  217 (256)
T 1nqb_A          208 LGVYYCFQGS  217 (256)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEcc
Confidence            9999999987

>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*

Probab=97.36  E-value=0.00058  Score=56.45  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=48.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~~------GLlI~~v~~  343 (378)
                      +.+.+|+++.|.|..... ......+.|+.+...++...|-. .           ..+|+....+      -|.|.+++.
T Consensus        12 ~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   90 (123)
T 3k1k_C           12 ALVQPGGSLRLSCAASGF-PVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKP   90 (123)
T ss_dssp             CEECTTCCEEEEEEEESS-CTTTSCEEEEEECSSSCCEEEEEECSSSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEECCCCCEEEEEEeeCC-cccccEEEEEEECCCCCCEEEEEEEcCCCceeeCccccccEEEEEeCCCCEEEEEECCCCh
Confidence            578899999999998643 22224689998754333222211 0           1235554322      299999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|....
T Consensus        91 ~Dsg~Y~Ca~~~  102 (123)
T 3k1k_C           91 EDTAVYYCNVNV  102 (123)
T ss_dssp             GGCEEEEEEEES
T ss_pred             hhCEEEEEEEec
Confidence            999999999864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.35  E-value=0.00028  Score=64.79  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEE-ecccCceeeEeeccCcceE-eecCceEEeeecCCCCe-EEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYH-YSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAG-KYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~-~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG-~Y~C~~~~  355 (378)
                      ...+.+.+|+++.|.|....|.   .+.++|+. ++..     |.  .+.++. ....+|.|.+++.+|+| .|.|.+.|
T Consensus        98 ~~~~~~~~g~~v~l~C~~~~p~---~~~v~W~~~~g~~-----l~--~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n  167 (290)
T 2o26_X           98 GLPLFGKEDSDALVRCPLTDPQ---VSQYSLIECDGKS-----LP--TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQR  167 (290)
T ss_dssp             CCCEEEETTSCEEECCCBSCCS---CEEEEEEETTSCC-----CC--TTCEEEEETTTEEEEESCCGGGTTCEEEEEEEE
T ss_pred             ccceEEecCCeEEEeCcCCCCC---CceEEEEeCCCcC-----CC--CCCceeeCCCCCEEEecccHHHCCCEEEEEEEE
Confidence            3457788999999999987543   14799954 4443     32  333333 33568999999999999 99999987


Q ss_pred             e--eeE--EEeeeec
Q psy10772        356 T--VLC--THNLTVD  366 (378)
Q Consensus       356 ~--~l~--~~~~~v~  366 (378)
                      .  ...  ...|.|.
T Consensus       168 ~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          168 DGTWLHSDKFTLKVR  182 (290)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCceEEeEEEEEEEE
Confidence            2  222  2566665

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=97.34  E-value=0.00081  Score=62.31  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...+.+ +..+.|.|+.+...++..-|. .           ...+|+....+      -|.|.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFT-FSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSC-GGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CEEEcCCCcEEEEEEecccc-CCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            45788999999999986432 112479999875322211110 0           11345544321      39999999


Q ss_pred             CCCCeEEEEEeCCe
Q psy10772        343 ELDAGKYDCWLGNT  356 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~  356 (378)
                      .+|+|.|.|.+.+.
T Consensus        88 ~~DsG~Y~C~~~~~  101 (257)
T 3bn9_D           88 AEDTAVYYCARPYL  101 (257)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             hhhCEEEEEEEecC
Confidence            99999999999864

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.34  E-value=0.001  Score=68.56  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee--cCceEEeeecCCCCeEEEEEeCCe---
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV--DGGLVIMAVEELDAGKYDCWLGNT---  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~~---  356 (378)
                      ..+..|+++.|.|....|    .+.++|+.++.+     |.  .+.++...  ...|.|.+++..|+|.|.|.+.+.   
T Consensus       121 ~~v~~g~~v~l~C~~~~p----~~~v~W~~~g~~-----l~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  189 (642)
T 1e07_A          121 KPVEDKDAVAFTCEPETQ----DATYLWWVNNQS-----LP--VSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSA  189 (642)
T ss_pred             eeEecCCcEEEEEECCCC----CeeEEEEECCeE-----CC--CCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCC
Confidence            456789999999998763    358999988754     32  33343332  346999999999999999999873   


Q ss_pred             -eeEEEeeeecc
Q psy10772        357 -VLCTHNLTVDA  367 (378)
Q Consensus       357 -~l~~~~~~v~~  367 (378)
                       .-....|+|..
T Consensus       190 ~~s~~~~l~V~~  201 (642)
T 1e07_A          190 RRSDSVILNVLY  201 (642)
T ss_pred             cccceEEEEEEe
Confidence             22446666663

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.34  E-value=0.00092  Score=67.08  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCC-eEEEEecccC--ce-eeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQP-MSWYHYSKDK--GR-YQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~-v~W~~~~~~~--~~-~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ....+.+|+++.|.|...+.+.   |. ++|+.++...  .. ..... .+++......-|.|.+++..|+|.|.|.+.|
T Consensus       219 ~~~~v~~G~~v~L~C~~~g~p~---p~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n  294 (524)
T 2ec8_A          219 ASYLLREGEEFTVTCTIKDVSS---SVYSTWKRENSQTKLQEKYNSWH-HGDFNYERQATLTISSARVNDSGVFMCYANN  294 (524)
T ss_dssp             SEEEEETTSCEEEEEEEEESST---TCEEEEEETTCSCCCCEEEEEEE-CSSSCEEEEEEEEESSCCTTTCEEEEEEEEC
T ss_pred             CcceEEcCCcEEEEEEEecCCC---cEEEEEEeCCCCCcccccccccc-ccCCccceEEEEEECCCCHHHCEEEEEEEEe
Confidence            4457899999999999975433   45 9999987651  10 00111 1111233345699999999999999999987


Q ss_pred             ---eeeEEEeeeeccc
Q psy10772        356 ---TVLCTHNLTVDAH  368 (378)
Q Consensus       356 ---~~l~~~~~~v~~~  368 (378)
                         ....+..|.|...
T Consensus       295 ~~g~~~~~~~l~V~~~  310 (524)
T 2ec8_A          295 TFGSANVTTTLEVVDK  310 (524)
T ss_dssp             SSCEEEEEEEEEEESS
T ss_pred             cCCceEEEEEEEEecc
Confidence               4455777777643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.34  E-value=0.00037  Score=65.09  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCC-CCCCCCeEEEEecccCce----------eeEeeccCcceEee-----cCceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPA-SMANQPMSWYHYSKDKGR----------YQIKFRSDKFIRTV-----DGGLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~-~La~~~v~W~~~~~~~~~----------~~l~~~~~~~~~~~-----~~GLlI~~v~  342 (378)
                      ...+.+.+|+++.|.|....+. ..+.+.++|+.++.....          ..+.....+|+...     +.-|.|.+++
T Consensus        21 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~  100 (331)
T 3u83_A           21 NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLE  100 (331)
T ss_dssp             CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCC
T ss_pred             CCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccC
Confidence            4568899999999999976541 112236999996532100          00110122343332     3449999999


Q ss_pred             CCCCeEEEEE-eC---CeeeEEEeeeeccc
Q psy10772        343 ELDAGKYDCW-LG---NTVLCTHNLTVDAH  368 (378)
Q Consensus       343 ~~DsG~Y~C~-~~---~~~l~~~~~~v~~~  368 (378)
                      .+|+|.|.|. +.   ...-....|.|...
T Consensus       101 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  130 (331)
T 3u83_A          101 LEDEGVYICEFATFPTGNRESQLNLTVMAK  130 (331)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             cccCcEEEEEEEecCCCccEEEEEEEEecC
Confidence            9999999998 42   24556667777653

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=97.33  E-value=0.00053  Score=56.19  Aligned_cols=74  Identities=22%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e---c----------cCcceEeec---C---ceEEee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F---R----------SDKFIRTVD---G---GLVIMA  340 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~---~----------~~~~~~~~~---~---GLlI~~  340 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|- .   .          ..+|+....   .   -|.|.+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~   87 (124)
T 1dlf_H            9 GGLVQPGGSMKLSCATSGF-TFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (124)
T ss_dssp             CCEECTTCCEEEEEEEESS-CTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CEEEcCCCCEEEEeECCCc-cCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEEECC
Confidence            4578899999999998532 1223479998875433222121 1   0          123554432   2   299999


Q ss_pred             ecCCCCeEEEEEeCC
Q psy10772        341 VEELDAGKYDCWLGN  355 (378)
Q Consensus       341 v~~~DsG~Y~C~~~~  355 (378)
                      ++.+|+|.|.|...+
T Consensus        88 ~~~~Dsg~Y~C~~~~  102 (124)
T 1dlf_H           88 LRAEDTGIYYCTGIY  102 (124)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             CCHHHCEEEEEEEEe
Confidence            999999999999764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.32  E-value=0.00043  Score=64.58  Aligned_cols=75  Identities=17%  Similarity=0.381  Sum_probs=46.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCC--CCeEEEEecccCceee------EeeccCcceEe---------ecCceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMAN--QPMSWYHYSKDKGRYQ------IKFRSDKFIRT---------VDGGLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~--~~v~W~~~~~~~~~~~------l~~~~~~~~~~---------~~~GLlI~~v~  342 (378)
                      ..+.+..|+++.|+|....++....  ..|+|+.++.......      .......++..         .+..|.|.+++
T Consensus         8 ~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (313)
T 4fqp_A            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (313)
T ss_dssp             SEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCC
Confidence            4567788999999999876544211  1389998765321100      01112222221         12239999999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|.+.
T Consensus        88 ~~D~G~Y~C~v~   99 (313)
T 4fqp_A           88 VEDEGNYTCLFV   99 (313)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hhhCEEEEEEEe
Confidence            999999999874

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.32  E-value=0.00026  Score=61.52  Aligned_cols=62  Identities=8%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             EeCCeeeeeeeec-cCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCce----EEeeecCCCCeEEEEEeCC
Q psy10772        285 TWGQSVHLSCFVK-LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGL----VIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       285 ~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GL----lI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..|+.+.|.|... +.+.   |.|+|+.++.+     |.. .+.++... ++||    .+..++..|+|.|.|.+.|
T Consensus       119 ~~g~~~~l~C~~~~g~P~---p~i~W~k~g~~-----l~~-~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n  186 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPE---PHLSWLENGEE-----LNA-INTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY  186 (201)
T ss_dssp             SSTTEEEEEEEEEEESSC---EEEEEEESSCE-----ECC-SEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEE
T ss_pred             CCCCeEEEEEecCCccCC---CEEEEEECCEE-----Ccc-ccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEec
Confidence            3488999999984 4433   58999998654     431 11222333 2366    3456778999999999987

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=97.31  E-value=0.0005  Score=61.65  Aligned_cols=75  Identities=17%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCe--EEEEecccCceeeEe-e--c-----------cCcceEeecCc------eEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIK-F--R-----------SDKFIRTVDGG------LVI  338 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v--~W~~~~~~~~~~~l~-~--~-----------~~~~~~~~~~G------LlI  338 (378)
                      .+.+.+|+++.|.|..... ......+  .|+.+...++...+. .  .           ..+|+....++      |.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~-~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGF-SLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CSEECTTSCEEEEEEEESC-GGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CEEECCCCcEEEEEEEeCc-ccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            3568889999999998532 1112356  998875432221110 0  0           11355544333      999


Q ss_pred             eeecCCCCeEEEEEeCCe
Q psy10772        339 MAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~~  356 (378)
                      .+|+.+|+|.|.|.+.+.
T Consensus        88 ~~v~~~DsG~Y~C~~~~~  105 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLR  105 (232)
T ss_dssp             CSCCGGGCEEEEEEEECC
T ss_pred             CcCChhhCEEEEEEEeec
Confidence            999999999999999754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.31  E-value=0.00014  Score=68.04  Aligned_cols=62  Identities=19%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+|+++.|.|...+.    .+.+.|+.++..     +.  ...........|.|.+++.+|+|.|.|.+.
T Consensus        33 ~~v~~G~~v~L~C~~~~~----~~~~~W~k~g~~-----~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR----FNNFMLYKEDRI-----HI--PIFHGRIFQESFNMSPVTTAHAGNYTCRGS   94 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB----CCSEEEEESSCS-----SS--CHHHHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred             CccCCCCCEEEEEEccCC----CceEEEEeCCCc-----cc--eeecCCcceEEEEECCCCcccCeEEEEEEE
Confidence            357789999999998655    247999988764     21  111111234569999999999999999875

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=97.31  E-value=0.00063  Score=55.07  Aligned_cols=74  Identities=20%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--c----------cCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--R----------SDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~----------~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+++.+|+++.|.|..... ......+.|+.+...++...|-.  .          ..+|+....+      -|.|.+++
T Consensus         7 ~~~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   85 (115)
T 3k74_B            7 GGLVQPGGSLRLSCAASGF-TFNNYWMYWVRRAPGKGLEWVSMINPGGIITKYAESVKGRFTISRDNAKNTLYLQMNSLT   85 (115)
T ss_dssp             CCEECTTCCEEEEEEECSS-CGGGSCEEEEEECTTCCEEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEECCCCcEEEEEEEeCc-cccCCEEEEEEECCCCCeEEEEEEECCCCceeecccccccEEEEEcCCCCEEEEEECCCC
Confidence            4568889999999998643 11123689998754333222211  0          1235544321      29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|....
T Consensus        86 ~~Dsg~Y~C~~~~   98 (115)
T 3k74_B           86 SEDTAVYYCAKDW   98 (115)
T ss_dssp             GGGCEEEEEEEST
T ss_pred             hHhCEEEEEEEEc
Confidence            9999999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.31  E-value=0.0003  Score=72.59  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+.+|+++.|.|...+.+.   |.++|+.++.+     |.  .       .+-|.|.+++.+|+|.|.|.+.|   .
T Consensus       567 ~~~~v~~g~~~~l~C~~~g~p~---p~v~W~~~g~~-----i~--~-------~~~L~i~~~~~~d~G~Y~C~a~N~~G~  629 (642)
T 1e07_A          567 PDSSYLSGANLNLSCHSASNPS---PQYSWRINGIP-----QQ--H-------TQVLFIAKITPNNNGTYACFVSNLATG  629 (642)
T ss_pred             CceeEEcCCcEEEEEEeccCCC---CeEEEEECCEE-----Cc--c-------CceEEECcccccCCeEEEEEEEecccC
Confidence            3467788999999999875544   58999988653     42  1       34689999999999999999997   4


Q ss_pred             eeEEEeeeec
Q psy10772        357 VLCTHNLTVD  366 (378)
Q Consensus       357 ~l~~~~~~v~  366 (378)
                      .-++-.|+|.
T Consensus       630 ~~~s~~l~V~  639 (642)
T 1e07_A          630 RNNSIVKSIT  639 (642)
T ss_pred             cceeEEEEEE
Confidence            4455555543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=97.31  E-value=0.00067  Score=62.01  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecCc------eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~G------LlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....+.|+.+...++...+- .           ...+|+....++      |.|.+|+
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFT-FTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             cEEEcCCCCEEEEEEeeccc-cCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            45788999999999986321 122479998875332211110 0           112355443333      9999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus       111 ~~DsG~Y~C~~~~  123 (256)
T 3sob_H          111 AEDTAVYYCARGS  123 (256)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccCEEEEEEEec
Confidence            9999999999875

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=97.31  E-value=0.00034  Score=58.54  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....+.|+.+...++...|- ..           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   87 (134)
T 1zvh_A            9 GGSVQAGGSLRLSCAASGYI-ASINYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYLQMNSLK   87 (134)
T ss_dssp             CEEECTTCCEEEEEEEEESG-GGEEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred             CEEEccCCCEEEEEEeCCCC-cCCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            46788999999999985321 112368999876433322121 11           123555442   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~DsG~Y~C~~~~  100 (134)
T 1zvh_A           88 PEDTALYYCAAAR  100 (134)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=97.30  E-value=0.0021  Score=68.21  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=58.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+..|+++.|.|...+.+   .|.++|+.++...... .....+.++.....-|.|.+++..|+|.|.|.+.|   .
T Consensus       256 ~~~~v~~g~~v~L~C~~~g~p---~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  331 (816)
T 3dmk_A          256 DMKTYSGSSTMALLCPAQGYP---VPVFRWYKFIEGTTRK-QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG  331 (816)
T ss_dssp             EEEEECTTSCEEECCCCBCSS---CCEEEEEEECTTSSCE-EECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             cceEEeCCCeEEEEEEeeecC---CCeEEEEeCCCCCccC-cceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCc
Confidence            467788999999999986543   3689999865432111 11123445555566799999999999999999986   3


Q ss_pred             eeEEEeeeecc
Q psy10772        357 VLCTHNLTVDA  367 (378)
Q Consensus       357 ~l~~~~~~v~~  367 (378)
                      .-....|+|..
T Consensus       332 ~~~~~~l~V~~  342 (816)
T 3dmk_A          332 ESVETVLTVTA  342 (816)
T ss_dssp             EEEEEEEEECE
T ss_pred             eEEEEEEEEcC
Confidence            44555666653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.30  E-value=0.00056  Score=66.57  Aligned_cols=75  Identities=19%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------------eccCcceEeecC------ceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------------FRSDKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------------~~~~~~~~~~~~------GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|...+.+. +.+.|+|+.+...+....+.            ....+|+....+      -|.|.++
T Consensus       226 ~~~~v~~G~~v~L~C~~~g~p~-~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  304 (438)
T 1qgc_4          226 GGGLVKPGGSLKLSCTASGFIF-NRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSL  304 (438)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCcEEEEEEEccccc-CCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCC
Confidence            4567889999999999875441 12579999873211110010            011234443321      5999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.|
T Consensus       305 ~~~D~G~Y~C~a~n  318 (438)
T 1qgc_4          305 RSADTAMYYCVRRE  318 (438)
T ss_dssp             CGGGCCEEEEEECC
T ss_pred             ChhhCEEEEEEEEc
Confidence            99999999999997

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=97.30  E-value=0.00052  Score=62.97  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecCc------eEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDGG------LVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~G------LlI~~v  341 (378)
                      ..+++.+|+++.|.|..... ......|.|+.+...++...+. .           ...+|+....++      |.|.+|
T Consensus         7 ~~v~v~~G~~v~L~C~~s~~-~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            7 GGGVVQPGSSLRLSCAASGF-DFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             CCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCEEEeCCCCEEEEEEeccc-cCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            45788899999999998642 1222479998875433221120 0           112455544333      999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|.+.+
T Consensus        86 ~~~DsG~Y~C~~~~   99 (248)
T 3u2s_H           86 RVEDTATYFCVREA   99 (248)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEeC
Confidence            99999999999875

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=97.30  E-value=0.00068  Score=60.69  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----cCcceEeec---C---ceEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----SDKFIRTVD---G---GLVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----~~~~~~~~~---~---GLlI~~v~~~DsG  347 (378)
                      +.+.+.+|+++.|.|.......   ..+.|+.+...++...|- ..     ..+|+....   .   -|.|.+++.+|+|
T Consensus         7 ~~~~v~~G~~vtL~C~~s~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg   83 (200)
T 2nw2_A            7 TEMTATEGAIVQINCTYQTSGF---NGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSA   83 (200)
T ss_dssp             SEEEEETTCCEEEEEECCCSSC---CCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeEEEccCCCEEEEEEECCCCC---ceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCC
Confidence            4678899999999999754432   369999886433322221 11     034554431   1   4999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|...+
T Consensus        84 ~Y~C~~~~   91 (200)
T 2nw2_A           84 SYLCAVQA   91 (200)
T ss_dssp             EEEEEEC-
T ss_pred             cEEEEEEc
Confidence            99999864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.29  E-value=0.0003  Score=60.96  Aligned_cols=96  Identities=15%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             EEEEEEEeeeecCCCeEEEEEEECCCeeE-EE--EeceeeeeccCCCCCcccccccceeEEEEeCCeeeeeeeeccCCCC
Q psy10772        226 LVVDVVQYEVFGTTSEYIVYFAATTTLRT-VF--VKVRLLQDVSNTSDSICESSVGRLKQTVTWGQSVHLSCFVKLPASM  302 (378)
Q Consensus       226 IaVd~v~~~~~~~~~~ytV~flGT~~G~v-~~--V~~~~lqd~~~~~~~~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~L  302 (378)
                      +.+..+...|   .+.|++.. -...|.. ..  +...+...+             .+......+.++.|.|...+.+. 
T Consensus        63 L~I~~v~~~D---~G~Y~C~~-~n~~g~~~~~~~~~l~V~~~~-------------~~p~i~~~~~~v~L~C~~~g~p~-  124 (176)
T 1hng_A           63 LKIKNLTRDD---SGTYNVTV-YSTNGTRILNKALDLRILEMV-------------SKPMIYWECSNATLTCEVLEGTD-  124 (176)
T ss_dssp             EEESSCCGGG---CEEEEEEE-EETTCCEEEEEEEEEEEECCC-------------CCCEEEEETTTTEEEEECSSCSS-
T ss_pred             EEEccccccc---CEEEEEEE-EeCCCCEEEEEEEEEEEeCCC-------------CCCEEEecCCcEEEEEEecCCCC-
Confidence            5555555555   68899884 3455664 11  111121111             11122234566999998765544 


Q ss_pred             CCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        303 ANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       303 a~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                        |.++|+.++.+     |.  .+       ..+.|.+++..|+|.|.|.+.|
T Consensus       125 --p~i~W~~~g~~-----l~--~~-------~~~~i~~~~~~d~G~Y~C~a~N  161 (176)
T 1hng_A          125 --VELKLYQGKEH-----LR--SL-------RQKTMSYQWTNLRAPFKCKAVN  161 (176)
T ss_dssp             --CEEEEEETTEE-----EE--EE-------SSSEEEEECSCCSSCEEEEEEE
T ss_pred             --cEEEEEECCEE-----CC--CC-------CcEEEEEEEccCCeEEEEEEEe
Confidence              68999987653     43  22       2356668899999999999997

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=97.28  E-value=0.00087  Score=57.19  Aligned_cols=74  Identities=20%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+...++...|-.            ...+|+....   +   -|.|.+++
T Consensus         9 ~~~v~~G~svtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   87 (148)
T 1jtp_A            9 GGSVQAGGSLRLSCAASGY-TIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSLE   87 (148)
T ss_dssp             CEEEETTCCEEEEEEEESC-SSCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSCC
T ss_pred             CEEEecCCCEEEEEEEeCc-cCCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCC
Confidence            4678899999999998532 22234699998864333221210            0123555442   2   39999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (148)
T 1jtp_A           88 PEDTAIYYCAADS  100 (148)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             hhHCEEEEEEEEc
Confidence            9999999999865

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.28  E-value=0.00064  Score=67.18  Aligned_cols=75  Identities=13%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...+.+ ...+.|.|+.+....+...+. .           ....|+....+      -|.|.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (457)
T 1hzh_H            9 AEVKKPGASVKVSCQASGYR-FSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (457)
T ss_dssp             CEEECTTCCEEECEEEESSC-GGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEecCcc-ccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCC
Confidence            46788999999999986442 123479999864322211110 0           11345544321      39999999


Q ss_pred             CCCCeEEEEEeCCe
Q psy10772        343 ELDAGKYDCWLGNT  356 (378)
Q Consensus       343 ~~DsG~Y~C~~~~~  356 (378)
                      .+|+|.|.|.+.+.
T Consensus        88 ~~D~G~Y~C~~~~~  101 (457)
T 1hzh_H           88 SADTAVYYCARVGP  101 (457)
T ss_dssp             GGGCEEEEEEECCC
T ss_pred             cccCEEEEEEEecC
Confidence            99999999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.28  E-value=0.00017  Score=66.30  Aligned_cols=64  Identities=14%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      ..+.+|+++.|.|....+.    +.+.|+.++..     +..  .........-|.|.+|+.+|+|.|.|.+.+.
T Consensus       111 ~~v~~G~~vtL~C~~~~~~----~~~~w~k~g~~-----~~~--~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          111 PEVISGEKVTFYCRLDTAT----SMFLLLKEGRS-----SHV--QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             SEEETTCEEEEEEECTTSC----SEEEEEECSSS-----CEE--EEEECSSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             CccCCCCcEEEEEecCCCC----CEEEEEECCCc-----cCc--cccCCCceEEEEeCCCccccCEEEEEEEECC
Confidence            3578899999999986442    37899988754     211  0001112345899999999999999999764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.28  E-value=0.00041  Score=64.92  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=49.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+ ...+.|.|+.+...++...|..            ...+|+....      .-|.|.++
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYT-FTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CcEEecCCCCEEEEEeccCCc-ccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            357889999999999986432 1124799998753222111100            0123443332      13999999


Q ss_pred             cCCCCeEEEEEeCCe
Q psy10772        342 EELDAGKYDCWLGNT  356 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~  356 (378)
                      +.+|+|.|.|.+.+.
T Consensus       109 ~~~DsG~Y~C~~~~~  123 (291)
T 2gki_A          109 TSEDSAVYYCARGAY  123 (291)
T ss_dssp             CGGGCEEEEEEEECG
T ss_pred             CHHHCEEEEEEEecc
Confidence            999999999999875

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=97.26  E-value=0.00092  Score=59.42  Aligned_cols=74  Identities=19%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec------CceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD------GGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~------~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|.......   ..|.|+.+...++...|-.       ...+|+....      --|.|.+++.+|
T Consensus         8 p~~v~v~~G~~v~L~C~~s~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~D   84 (194)
T 1lp9_E            8 EGLVTLTEGLPVMLNCTYQSTYS---PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (194)
T ss_dssp             CSEEEEETTSCEEECEEEECSSS---CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             CCEEEEecCCCEEEEEEeCCCCC---ceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCccc
Confidence            35678899999999999864432   4799998864333221211       1134554431      249999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|...+
T Consensus        85 sg~Y~C~~~~   94 (194)
T 1lp9_E           85 SALYYCALFL   94 (194)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeeEEEEEec
Confidence            9999999863

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=97.25  E-value=0.00063  Score=55.58  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecC------ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDG------GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~------GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...... .....+.|+.+...++...|- .           ...+|+....+      -|.|.+++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~~-~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   87 (120)
T 3iy0_H            9 TELVAPGGGVKLSCGASGYT-FTNYDMNWVRQRPGAGLEWIGWIFPGDGSARGNEKFGGAAALAAAAAGGTAYMGLGGLS   87 (120)
T ss_dssp             CEEECSSCCEEEEEEEESSC-GGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEecCCCCEEEEEEeECCC-ccCCeEEEEEECCCCCCEEEEEEeCCCCceecChhhcCcEEEEEecCCCEEEEEECCCC
Confidence            36788999999999986431 112368999875433322221 1           11235544321      29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|....
T Consensus        88 ~~Dsg~Y~C~~~~  100 (120)
T 3iy0_H           88 SEDSGVYFCARRG  100 (120)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             hHHCEEEEEEEEe
Confidence            9999999999853

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.25  E-value=0.00017  Score=63.19  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------ccCcceEeecCceEEeeecCCCCeEEEEEeCCee
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTV  357 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~  357 (378)
                      +|+++.|.|...+... +++.|+|+.++.+     |..        ..+.. .....-|.|.+++..|+|.|.|.+.|..
T Consensus       128 ~g~~v~l~C~~~g~~p-~~~~v~W~k~g~~-----l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  200 (213)
T 3mj8_L          128 KTNQATLVCMINGFYP-ADVAVTWEADGTP-----ITQGVKTTQPSKSDSK-YMATSYLTMTADAWKSRNTFICKVTHGG  200 (213)
T ss_dssp             TTTEEEEEEEEEEEBS-SCCEEEEEETTEE-----ECTTEEECCCEEETTE-EEEEEEEEEESHHHHSCSCEEEEEEETT
T ss_pred             cCCcEEEEEEeeceeC-CCeEEEEEcCCcc-----cCCCcccCCcCccCCc-EEEEEEEEEeHHHcCCCCEEEEEEEECC
Confidence            6999999999875211 1137999998754     310        01111 1222348899999999999999999743


Q ss_pred             eEEEeeeeccccc
Q psy10772        358 LCTHNLTVDAHSN  370 (378)
Q Consensus       358 l~~~~~~v~~~~c  370 (378)
                       .....+|..-+|
T Consensus       201 -~~~~~~~~~s~c  212 (213)
T 3mj8_L          201 -NTVEKSLSPSAC  212 (213)
T ss_dssp             -EEEEEEECC---
T ss_pred             -ccEEeeeccccC
Confidence             444555555555

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=97.23  E-value=0.00067  Score=61.29  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--c-----cCcceEeec------CceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--R-----SDKFIRTVD------GGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~-----~~~~~~~~~------~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|.......   +.+.|+.+...++...|-.  .     ..+|+....      --|.|.+++.+|
T Consensus        10 p~~~~v~~G~svtL~C~~s~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~D   86 (210)
T 2eys_A           10 PQSLIILEGKNCTLQCNYTVSPF---SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   86 (210)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSC---CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             CCEEEEecCCCEEEEEEECCCCC---CeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCccc
Confidence            35678999999999999864432   3699998764333221211  1     134554432      149999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|...+
T Consensus        87 sg~Y~C~~~~   96 (210)
T 2eys_A           87 SASYICVVSD   96 (210)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEEEEc
Confidence            9999999865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.22  E-value=0.00039  Score=60.93  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=42.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe----ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT----VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~----~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|....+    .+.+.|+.++.....      ...+...    ...-|.|.+|+  |+|.|.|.+.+
T Consensus       118 ~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~~~~------~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~  182 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRSS----YDMYHLSREGEAHER------RLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSF  182 (201)
T ss_dssp             EECTTCEEEEEEEESSC----CSEEEEEETTCSSCE------EEECEEEETTEEEEEEEEEECC--SCEEEEEEEEE
T ss_pred             ccCCCCeEEEEEeCCCC----CceEEEEECCcccCc------ccccccccCCceEEEEEeCCcC--CCeeEEEEEEc
Confidence            57889999999998643    247899988754211      0001111    13348899998  99999999874

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=97.22  E-value=0.00081  Score=54.88  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEE-EecccCceeeEeeccCcceE---eecC----ceEEeeecCCCCeEEEEEe
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWY-HYSKDKGRYQIKFRSDKFIR---TVDG----GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~-~~~~~~~~~~l~~~~~~~~~---~~~~----GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .++..|+++.|+|.++.-..  +|+|+|. +++....+  |.    .+..   -.++    =|-|.+|-.+|+|.|.|.+
T Consensus        21 hsv~~G~~f~leCpv~yc~~--rP~VtWcKln~~~c~~--L~----~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsA   92 (120)
T 2aw2_A           21 HSILAGDPFELECPVKYCAN--RPHVTWCKLNGTTCVK--LE----DRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   92 (120)
T ss_dssp             EEEETTSCEEEEEEEECSSS--CCEEEEEEECSSCEEE--CC----SSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             ceEecCCeEEEEccEEeccC--CCceEEEecCCceEEE--Cc----cccccceecCCeeEEEEEEeeeeEcCCcceEEEe
Confidence            46777999999999986322  4689995 44433211  31    2222   1122    3667788899999999999


Q ss_pred             CC--eeeEEEeeee
Q psy10772        354 GN--TVLCTHNLTV  365 (378)
Q Consensus       354 ~~--~~l~~~~~~v  365 (378)
                      +.  .++-|+.+++
T Consensus        93 n~~sg~ieSHsvtI  106 (120)
T 2aw2_A           93 NFQSNLIESHSTTL  106 (120)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             eCCCCcEEeeEEEE
Confidence            86  6666666553

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.21  E-value=0.0008  Score=66.13  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEeec------CceEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTVD------GGLVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~~------~GLlI~~v  341 (378)
                      ..+.+.+|+++.|.|.....+ .+.+.|.|+.+........+..            ...+|+....      .-|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            8 GGGLVQPGGSLKLSCATSGFT-FSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             CCCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEcCCCCEEEEEEcCCCc-cCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            346788999999999986432 1234799988743211110100            0123544432      14999999


Q ss_pred             cCCCCeEEEEEeCCee-----e-EEEeeeecc
Q psy10772        342 EELDAGKYDCWLGNTV-----L-CTHNLTVDA  367 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~~~-----l-~~~~~~v~~  367 (378)
                      +.+|+|.|.|.+.+..     . ....|+|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            9999999999998742     1 224566664

>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}

Probab=97.18  E-value=0.0011  Score=55.36  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=48.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeecC------ceEEeeecC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~~------GLlI~~v~~  343 (378)
                      .+++.+|+++.|.|..... ......+.|+.+...++...|- ..          ..+|+....+      -|.|.+++.
T Consensus         9 ~v~v~~G~~VtL~C~~s~~-~~~~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~   87 (127)
T 3k81_A            9 GGLAQAGGSLRLSCVVSGI-TFASEAWGWYRRAPGKQRELIAAINNEGRTNYVDSVKGRFTVSRDNAKNVMYLQMNSLKP   87 (127)
T ss_dssp             CCBCCBTCEEEEEEBCSCC-CCSSSCEEEEEECSSSCEEEEEEECSSCCEEECTTTTTTCEEEEETTTTEEEEEEESBCT
T ss_pred             CEEEccCCCEEEEEEecCC-CccCcEEEEEEECCCCCCEEEEEEECCCceEcCCcccCCEEEEEcCCCCEEEEEECCCCh
Confidence            4567889999999998543 2222368999875433332221 10          1235544321      299999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|....
T Consensus        88 ~Dsg~Y~Ca~~~   99 (127)
T 3k81_A           88 EDTAVYYCNANL   99 (127)
T ss_dssp             TTCEEEEEECCC
T ss_pred             hhCEEEEEEEee
Confidence            999999999864

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.17  E-value=0.00056  Score=63.55  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce-EeecCceEEeeecCCCCeEEEEEeC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI-RTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~-~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+|+++.|.|....+    .+.+.|+.++.......+.   ..+. .....-|.|.+++.+|+|.|.|.+.
T Consensus        16 ~~V~~G~~VtL~C~~~~~----~~~~~W~k~g~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDVR----FQHFLLHREGKFKDTLHLI---GEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             SEEESSCCEEEEEEESSC----CSEEEEEEESTTCEEEEEE---CBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CEecCCCCEEEEEecCCC----CcEEEEEECCCCCCcceee---eeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            467889999999998533    2478999887642110110   0000 1123448999999999999999985

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.16  E-value=0.00073  Score=65.72  Aligned_cols=88  Identities=20%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCceeeEee-------ccCcceEee-cC---ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DG---GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~---GLlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|.....+.. ..+.|+|+.+........+..       ....|+... ..   -|.|.+++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (438)
T 1qgc_4            8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDV   87 (438)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCC
Confidence            356788999999999998654320 012699998742211100100       012343332 22   399999999999


Q ss_pred             eEEEEEeCCee----eEEEeeeec
Q psy10772        347 GKYDCWLGNTV----LCTHNLTVD  366 (378)
Q Consensus       347 G~Y~C~~~~~~----l~~~~~~v~  366 (378)
                      |.|.|.+.+..    -....|+|.
T Consensus        88 G~Y~C~a~n~~~~~~~~~~~l~V~  111 (438)
T 1qgc_4           88 ATYYCQQSNEVPLTFGAGTKLDLK  111 (438)
T ss_dssp             EEEEEEECSSTTCCBCCCEEEEEC
T ss_pred             eeEEEEEecCCCccccCceeEEec
Confidence            99999999843    223455554

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.16  E-value=0.00074  Score=62.79  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC-c---eEEeeecCCCCeEEE
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG-G---LVIMAVEELDAGKYD  350 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~-G---LlI~~v~~~DsG~Y~  350 (378)
                      +.+.+|+++.|.|...... .+.+.+.|+.+........|..       ...+|+..... +   |.|.+++.+|+|.|.
T Consensus       149 ~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  227 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNN-VGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYY  227 (280)
T ss_dssp             EEECTTCCEEEEEECCCCC-CCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             EEEecCCCEEEEEEecCCC-CCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEE
Confidence            7889999999999986511 1225799987643211100000       01233333222 2   999999999999999


Q ss_pred             EEeCCee------eEEEeeeecccccCCCC
Q psy10772        351 CWLGNTV------LCTHNLTVDAHSNVADA  374 (378)
Q Consensus       351 C~~~~~~------l~~~~~~v~~~~c~~~~  374 (378)
                      |.+.+..      -..-.|+|....-.+|+
T Consensus       228 C~~~~~~~~~~~~g~~t~l~V~~~~~~~P~  257 (280)
T 3fku_X          228 CSTWDSSLSAVVFGGGTKLTVLGQPKAAPS  257 (280)
T ss_dssp             EEEEETTTTEEEEBCCCEEEEC--------
T ss_pred             EEEecCCCCceEECCCEEEEECCCCCCCCc
Confidence            9996532      12235677655544444

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=97.15  E-value=0.00049  Score=65.80  Aligned_cols=67  Identities=25%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCeeeEEEee
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNL  363 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~l~~~~~  363 (378)
                      +..|+++.|.|..+.+     +.|+|+.++...    +        ...++-|.|.+++..|+|.|.|++....++.-.|
T Consensus        18 ~~~G~~v~l~C~~~~~-----~~i~W~~~~~~~----~--------~~~~~~L~i~~~~~~d~G~YtC~~~~~~~~~~~l   80 (306)
T 3d85_D           18 DAPGEMVVLTCDTPEE-----DGITWTLDQSSE----V--------LGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL   80 (306)
T ss_dssp             SCCCEEEEEECSSSCC-----SSCEEEETTCCC----C--------CEESSEEEEEECSGGGCEEEEEEETTEEEEEEEE
T ss_pred             CccCCcEEEECCCCCC-----CcCEEEECCccc----c--------CCCCCEEEEEecCcCCCceEEEeeCCcccceEEE
Confidence            3469999999998632     268999887531    1        1245569999999999999999997777777777


Q ss_pred             eecc
Q psy10772        364 TVDA  367 (378)
Q Consensus       364 ~v~~  367 (378)
                      .|+.
T Consensus        81 ~v~~   84 (306)
T 3d85_D           81 LLHK   84 (306)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=97.15  E-value=0.00096  Score=54.71  Aligned_cols=73  Identities=22%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCe--EEEEecccCceeeEe-ec----------cCcceEeec---C---ceEEeee
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPM--SWYHYSKDKGRYQIK-FR----------SDKFIRTVD---G---GLVIMAV  341 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v--~W~~~~~~~~~~~l~-~~----------~~~~~~~~~---~---GLlI~~v  341 (378)
                      .+.+.+|+++.|.|..... ......+  .|+.+...++...|- ..          ..+|+....   .   -|.|.++
T Consensus         9 ~~~v~~G~~vtL~C~~s~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   87 (122)
T 3nn8_A            9 PEDVKPGASVKISCKASGY-SLSTSGMGVNWVKQSPGKGLEWLAHIYWDDDKRYNPSLKSRATLTVDKTSSTVYLELRSL   87 (122)
T ss_dssp             CEEECTTCCEEEEEEEESS-CTTSTTCEEEEEEEETTEEEEEEEEEETTCCEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             CeEEeCCCcEEEEEEEECC-CccCceEEeEEEEeCCCCCcEEEEEEEcCCCeecCccccCCEEEEEeCCCCEEEEEECCC
Confidence            4678899999999998642 2222357  998875432222121 10          123544432   1   2999999


Q ss_pred             cCCCCeEEEEEeC
Q psy10772        342 EELDAGKYDCWLG  354 (378)
Q Consensus       342 ~~~DsG~Y~C~~~  354 (378)
                      +.+|+|.|.|...
T Consensus        88 ~~~Dsg~Y~C~~~  100 (122)
T 3nn8_A           88 TSEDSSVYYCARR  100 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ChhhCEEEEEEEE
Confidence            9999999999985

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.15  E-value=0.0006  Score=62.84  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee------------ccCcceEee------cCceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF------------RSDKFIRTV------DGGLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~------------~~~~~~~~~------~~GLlI~~v~~  343 (378)
                      ..+.+|+++.|.|.....+. +.+.|.|+.+...+....|..            ..++|+...      ..-|.|.+++.
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~-~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  226 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSF-TGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS  226 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEcCCCcEEEEEEEeCCcc-CCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc
Confidence            46889999999999864421 124799998753222111210            012343332      12499999999


Q ss_pred             CCCeEEEEEeCCe
Q psy10772        344 LDAGKYDCWLGNT  356 (378)
Q Consensus       344 ~DsG~Y~C~~~~~  356 (378)
                      +|+|.|.|.+.|.
T Consensus       227 ~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          227 EDSADYYCVRSGN  239 (264)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999873

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.15  E-value=0.00091  Score=60.95  Aligned_cols=77  Identities=23%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec---C---ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD---G---GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~---~---GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|.|...+.+ +..+.|.|+.+...++..-|-.       ...+|+....   .   -|.|.+++.+|
T Consensus         8 p~~v~v~~G~~vtL~C~~s~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A            8 HQTVPVSIGVPATLRCSMKGEA-IGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (229)
T ss_dssp             CSEEEEETTCCEEEEEEECSSC-GGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEeEecCCc-cCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhH
Confidence            3567899999999999986332 1123699998754322211211       0134554432   2   39999999999


Q ss_pred             CeEEEEEeCCe
Q psy10772        346 AGKYDCWLGNT  356 (378)
Q Consensus       346 sG~Y~C~~~~~  356 (378)
                      +|.|.|...+.
T Consensus        87 sg~Y~C~~~~~   97 (229)
T 1hxm_A           87 EGSYYCACDTL   97 (229)
T ss_dssp             CEEEEEEEECC
T ss_pred             CeEEEEEEecC
Confidence            99999998754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.15  E-value=0.00069  Score=62.17  Aligned_cols=75  Identities=21%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-------------ccCcceEeec------CceEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-------------RSDKFIRTVD------GGLVIM  339 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-------------~~~~~~~~~~------~GLlI~  339 (378)
                      ..+.+.+|+++.|.|.....+. ..+.+.|+.+........|. .             ..++|+....      .-|.|.
T Consensus       159 ~~~~v~~G~~v~L~C~~~~~~~-~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  237 (268)
T 1x9q_A          159 GGGLVQPGGAMKLSCVTSGFTF-GHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMN  237 (268)
T ss_dssp             CCEEECTTCCEEEEEEEESSCG-GGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CceEecCCCcEEEEEEecCccc-cccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEEC
Confidence            3567889999999999864321 12479999875322111110 0             1233444432      239999


Q ss_pred             eecCCCCeEEEEEeCC
Q psy10772        340 AVEELDAGKYDCWLGN  355 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~~~  355 (378)
                      +++.+|+|.|.|.+.+
T Consensus       238 ~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          238 NLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             CCCHHHCEEEEEEEcc
Confidence            9999999999999875

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=97.14  E-value=0.00089  Score=61.95  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----------ccCcceEeecCc------eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----------RSDKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----------~~~~~~~~~~~G------LlI~~v~  342 (378)
                      .+.+.+|+++.|.|..... ......+.|+.+....+...+. .           ...+|+....++      |.|.+|+
T Consensus        32 ~~~~~~G~~v~L~C~~s~~-~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGN-SFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGG-GGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CEEEeCCCcEEEEEEeeCC-ccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            4678899999999998542 1222478998875432221121 1           112455543333      9999999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|...
T Consensus       111 ~~DsG~Y~C~~~  122 (267)
T 3u1s_H          111 ADDTAIYYCLTG  122 (267)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hhhCEEEEEEEC
Confidence            999999999985

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=97.14  E-value=0.0015  Score=58.52  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=49.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----cCcceEeec---C---ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----SDKFIRTVD---G---GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----~~~~~~~~~---~---GLlI~~v~~~DsG~  348 (378)
                      +.+.+.+|+++.|.|....... . ..+.|+.+...++...|- ..    ..+|+....   .   -|.|.+++.+|+|.
T Consensus         7 ~~~~v~~G~~v~L~C~~s~~~~-~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~   84 (206)
T 1kgc_D            7 NSMESNEEEPVHLPCNHSTISG-T-DYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   84 (206)
T ss_dssp             SEEEEETTSCEEEEEEESCCCT-T-CCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEEEcCCCC-C-ccEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcccCcc
Confidence            4578899999999999854121 1 369999886433321121 11    134554432   1   49999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|...+
T Consensus        85 Y~C~~~~   91 (206)
T 1kgc_D           85 YYCILPL   91 (206)
T ss_dssp             EEEECCC
T ss_pred             EEEEEec
Confidence            9999875

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=97.14  E-value=0.0019  Score=51.84  Aligned_cols=85  Identities=16%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee--cCc---eEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV--DGG---LVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~--~~G---LlI~~v~~~Ds  346 (378)
                      ...+.+.+|+++.|.|... + ......+.|+.+...+ ...|...       -.+|+...  ..|   |.|.+|+.+|+
T Consensus         4 p~~v~~~~G~svtl~C~~s-~-~~~~~~~~Wyrq~~g~-~~~li~~~~~~~~~~~~R~s~~~~~~~~~~L~I~~l~~~Ds   80 (106)
T 2frg_P            4 PEVLQAPVGSSILVQCHYR-L-QDVKAQKVWCRFLPEG-CQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDA   80 (106)
T ss_dssp             CEEEEECTTCCEEEEEECC-G-GGTTSEEEEEEEETTE-EEEEEECCBTCEEEETTTEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CcEEEEecCCcEEEEeEec-C-CcccCcEEEEECCCCC-CcEEEEeCCcEeeecCCCEEEEcCCCCEEEEEEccCCHHHC
Confidence            3457888999999999864 2 1111247898875321 1111110       12344432  223   99999999999


Q ss_pred             eEEEEEeCC----eeeEEEeeeec
Q psy10772        347 GKYDCWLGN----TVLCTHNLTVD  366 (378)
Q Consensus       347 G~Y~C~~~~----~~l~~~~~~v~  366 (378)
                      |.|.|....    +.+....|+|.
T Consensus        81 g~Y~C~~~~~~~~d~~~~v~L~V~  104 (106)
T 2frg_P           81 GEYGCMVDGARGPQILHRVSLNIL  104 (106)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeecCCCCCEeEEEEEEEe
Confidence            999999864    44566666664

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=97.13  E-value=0.001  Score=55.98  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=47.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-c----------cCcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-R----------SDKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-~----------~~~~~~~~~~------GLlI~~v~~  343 (378)
                      +++.+|+++.|.|...... .....+.|+.+...++...|- . .          ..+|+....+      -|.|.+++.
T Consensus        14 ~~v~~G~~vtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   92 (136)
T 3tpk_A           14 GSVQPGGSLRLSCTASGYT-FSQEFVIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAKNTVYLQMNNLKP   92 (136)
T ss_dssp             EEECTTCCEEEEEEEEESG-GGCCEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEccCCCEEEEEEEcccc-cCCcEEEEEEECCCCCcEEEEEEECCCCcEEcCcccCCCEEEEEcCCCCEEEEEECCCCh
Confidence            5788999999999986431 112368999875433322221 1 0          1235544321      299999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|+|.|.|....
T Consensus        93 ~Dsg~Y~C~~~~  104 (136)
T 3tpk_A           93 EDTAMYYCAAAP  104 (136)
T ss_dssp             GGCEEEEEEEES
T ss_pred             hhCEEEEEEEEe
Confidence            999999999864

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=97.13  E-value=0.00091  Score=54.22  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e----------ccCcceEee-----cCceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F----------RSDKFIRTV-----DGGLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~----------~~~~~~~~~-----~~GLlI~~v~  342 (378)
                      ...+.+.+|+++.|+|............|.|+.+.. .....|- .          +-..|+...     +-.|.|.+|+
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~-~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~   86 (119)
T 2pnd_A            8 PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHG-SDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQ   86 (119)
T ss_dssp             CSEEEEETTSCEEECCBCCCCTTCEEEEEEEEEEET-TEEEEEEEEETTEEECCSGGGTTTEEECCSSTTBCCEEESSCC
T ss_pred             CceEEEEcCCcEEEEEEEcCCCCCCceEEEEEEeCC-CCceEEEEEcCCCceeecccccCcEEEccCCCCCEEEEEccCC
Confidence            456789999999999986432221111369988732 1111121 1          012343322     1249999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|....
T Consensus        87 ~~D~G~Y~C~v~~   99 (119)
T 2pnd_A           87 MDDRNHYTCEVTW   99 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEEEEEEEEE
Confidence            9999999998743

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=97.12  E-value=0.00046  Score=64.57  Aligned_cols=69  Identities=10%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             cceeEEEEeCCeeeeeeeeccC----CCCCCCCeEEEEecccCceeeEeeccCcceEeecC---ceEEeeecCCCCeEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLP----ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG---GLVIMAVEELDAGKYD  350 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~----~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~---GLlI~~v~~~DsG~Y~  350 (378)
                      ..+.+.+..|+++.|.|.....    +..+.|.|.|++++..     |.  .+ ++.+.+.   -|.|.+++..| |.|.
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~-----i~--~~-~~~~~~~~~~~L~i~~~~~~~-g~Y~   80 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFT-----IP--KE-QYTIINRTASSVTFTDIASLN-IQLT   80 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEE-----CC--GG-GCEEEETTEEEEEECSCCCSE-EEEE
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEE-----CC--hh-heeeeCCcEEEEEEcCcCCCc-eEEE
Confidence            4456788999999999998742    1223358999998753     42  22 3222222   39999999885 9999


Q ss_pred             EEeCC
Q psy10772        351 CWLGN  355 (378)
Q Consensus       351 C~~~~  355 (378)
                      |.+.+
T Consensus        81 C~a~~   85 (303)
T 1i1r_A           81 CNILT   85 (303)
T ss_dssp             EEEEE
T ss_pred             Eeccc
Confidence            99865

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.12  E-value=0.00039  Score=65.06  Aligned_cols=64  Identities=19%  Similarity=0.213  Sum_probs=44.2

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce--EeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      +.+|+++.|.|....++    +.+.|+.++........    ....  ......|.|.+|+.+|+|.|.|.+.|
T Consensus       130 v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n  195 (316)
T 3vh8_G          130 VKSGERVILQCWSDIMF----EHFFLHKEGISKDPSRL----VGQIHDGVSKANFSIGPMMLALAGTYRCYGSV  195 (316)
T ss_dssp             EETTCCEEEEEEESSCC----SEEEEEETTCCSCCEEE----ECEEETTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCCCeEEEEEcCCCCC----cEEEEEECCCcccccee----eeeecCCCceEEEEECCCChhhCceEEEEEec
Confidence            77899999999985432    37899988764211000    0000  01334599999999999999999986

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.12  E-value=0.0003  Score=64.62  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=42.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+|+++.|.|....+    .+.+.|+.++..     +....... ......-|.|.+|+.+|+|.|.|.+.+
T Consensus        17 ~v~~G~~VtL~C~~~~~----~~~~~w~k~g~~-----~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNYG----AVEYQLHFEGSL-----FAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             EEETTCCEEEEEECCTT----CCEEEEEETTEE-----EEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCcEEEEEeeCCC----CcEEEEEECCCc-----cccccccccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            67889999999997532    236899876643     21100111 111233489999999999999999854

>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H

Probab=97.11  E-value=0.0014  Score=56.42  Aligned_cols=74  Identities=19%  Similarity=0.144  Sum_probs=49.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-----------cCcceEeec---C---ceEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-----------SDKFIRTVD---G---GLVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-----------~~~~~~~~~---~---GLlI~~v~  342 (378)
                      .+.+.+|+++.|.|...+.. .....+.|+.+...++...|-. .           ..+|+....   .   -|.|.+++
T Consensus         9 ~~~v~~G~svtL~C~~s~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~   87 (153)
T 2vyr_E            9 GGLVQPGGSLRLSCAASGFT-FEEYAMLWVRQAPGKGLEWVSGINARGYTTYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (153)
T ss_dssp             CEEECTTCCEEEEEEEESSC-GGGCCEEEEEECTTSCCEEEEEECTTSCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEecCCCEEEEEEEeCCc-cCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCC
Confidence            46788999999999985321 1123689998864333222211 1           123554432   2   29999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|...+
T Consensus        88 ~~Dsg~Y~C~~~~  100 (153)
T 2vyr_E           88 TEDTAVYYCAKPW  100 (153)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             HHHCEEEEEEEEe
Confidence            9999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1q47a_	495	b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus)	3e-69
d1olza2	478	b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sap	3e-64
d1shyb1	476	b.69.12.1 (B:40-515) Hepatocyte growth factor rece	3e-41
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	7e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.002
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.002
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.003
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.003
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.004

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]} Length = 495

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  223 bits (570), Expect = 3e-69
 Identities = 85/238 (35%), Positives = 125/238 (52%), Gaps = 26/238 (10%)

Query: 35  QPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQN 87
            P F+ ++ I          V+FFFRE A++  + GK+  +R+ ++CK D GG   L   
Sbjct: 198 DPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 257

Query: 88  WATYLKARLNCSIPGE--FPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICS 142
           W T+LKARL CS+PG      +F+E+QD++ +      +   YGVFTTS+    GSA+C 
Sbjct: 258 WTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCM 317

Query: 143 FSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQC-------VNDTETLPDSVLN 195
           +S+ D+ R F+G +  +      W+P    RVP PRPG C        + T+ LPD V+ 
Sbjct: 318 YSMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVIT 376

Query: 196 FIRSHPLMDEAVAHRDNKPVFYRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAATTT 251
           F RSHP M   V   +N+P+  + D+   FT +VVD V         +Y V F  T  
Sbjct: 377 FARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVD----AEDGQYDVMFIGTDV 430

>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 478

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  210 bits (535), Expect = 3e-64
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 31/241 (12%)

Query: 35  QPDFVGSYDI----------GKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNIL 84
           +P FV +  I             V+FFF E +VEY    + +  R+ARVCK D GG   L
Sbjct: 185 EPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTL 244

Query: 85  SQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVP---GDDTKFYGVFTTSTTGLMGSAIC 141
            + W ++LKARL CS P      FN ++D++ +         FY +FT     +  SA+C
Sbjct: 245 QKKWTSFLKARLICSRPDS-GLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVC 303

Query: 142 SFSIEDIERAFV-GKFKEQAT---STSAWLPVLSSRVPEPRPGQCVND---------TET 188
           ++++   E  F  GK+ +  T   S + W+   +  VP+PRPG C++          +  
Sbjct: 304 AYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRY-NGPVPKPRPGACIDSEARAANYTSSLN 362

Query: 189 LPDSVLNFIRSHPLMDEAVAHRDNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAA 248
           LPD  L F++ HPLMD++V   DN+P   ++D+ +T +VVD  Q       + Y V F +
Sbjct: 363 LPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQAL---DGTVYDVMFVS 419

Query: 249 T 249
           T
Sbjct: 420 T 420

>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 476

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 3e-41
 Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 57/278 (20%)

Query: 24  VMCAHRYDNCLQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNI 83
           +     + +     +V +++   +++F   +         ++  +R+ R C  ++G    
Sbjct: 196 IDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETL---DAQTFHTRIIRFCSINSG---- 248

Query: 84  LSQNWATYLKARLNCSIPGEFP------FYFNEIQDIY------------KVPGDDTKFY 125
                 +Y++  L C +    P        FN +Q  Y                +D   +
Sbjct: 249 ----LHSYMEMPLECILTELVPRGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILF 304

Query: 126 GVFTTSTTGLM----GSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQ 181
           GVF  S          SA+C+F I+ +   F     +                  P    
Sbjct: 305 GVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQH-------FYGPNHEH 357

Query: 182 CVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYR--RDLLFTHLVVDVVQYEVFGTT 239
           C N T  L +S     R      E         +F     ++L T +   +         
Sbjct: 358 CFNRT-LLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKG------- 409

Query: 240 SEYIVYFAATTTLRTVFVKVRLLQDVSNTSDSICESSV 277
            +  +    T+  R  F++V     VS +  S    + 
Sbjct: 410 -DLTIANLGTSEGR--FMQVV----VSRSGPSTPHVNF 440

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            T   G SV L+C          +  +  H+   K               +   L++ +V
Sbjct: 16  LTSLPGDSVTLTCPGV-----EPEDNATVHWVLRKPAAGSHPS---RWAGMGRRLLLRSV 67

Query: 342 EELDAGKYDCWLGNTVLCTHNLTVD 366
           +  D+G Y C+       T +L VD
Sbjct: 68  QLHDSGNYSCYRAGRPAGTVHLLVD 92

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 282 QTVTWGQSVHLSCFVKLP-ASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMA 340
            T   G+ V L C V    A++             K RY+I+    K I      L+I  
Sbjct: 10  TTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI------LIIEG 63

Query: 341 VEELDAGKYDCWLGNTVLCTHNLTV 365
             + DA +Y          +  L+V
Sbjct: 64  ATKADAAEYSVMTTGGQ-SSAKLSV 87

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHY------SKDKGRYQIKFRSDKFIRTVDGG 335
            TV  G+ +     VK    +    + W+        SK     Q+K   ++  R     
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTV 365
           + I+  ++  AG Y C +        C+ +L V
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  GQS +  C V               + KD    +   +  K     D GL I  V
Sbjct: 11  TEVGEGQSANFYCRVI------ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV 64

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDAHS 369
           +  D G+Y     N   T      L V  HS
Sbjct: 65  KGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 6/101 (5%)

Query: 279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI 338
             KQ +       L C         N  +    + K     +     +     V   L++
Sbjct: 6   IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK---DCKPLLLDNIHFSGVKDRLIV 62

Query: 339 MAVEELDAGKYDCWLGNTVLCTH-NLTVDAHSNVAD--APT 376
           M V E   G Y C    T L     +T        +   PT
Sbjct: 63  MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 282 QTVTWGQSVHLSC------FVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG 335
             VT G S+  S        +K P     +       SK     Q+    D+  +     
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 336 LVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA 367
           L I   +    G Y C +           NLTV  
Sbjct: 74  LHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 9e-04
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG-LVIMA 340
             V    +V   C           PM    + K+   ++ + R   +        L++ +
Sbjct: 15  HAVPAANTVKFRCPAG------GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMES 68

Query: 341 VEELDAGKYDCWLGN---TVLCTHNLTV 365
           V   D G Y C + N   ++  T++L V
Sbjct: 69  VVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
           Q V  G+SV L   V               + K + + Q               L I+A 
Sbjct: 10  QKVRAGESVELFGKVT------GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA 63

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
            +   G Y   + N   +     NLTV
Sbjct: 64  RQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 287 GQSVHLSCFVKLPASMANQPMSWYHYSKD-------KGRYQIKFRSDKFIRTVDGGLVIM 339
           G  ++L+     P       +    + +        K + +   +S  F    +G L I 
Sbjct: 10  GHGINLNI----PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 65

Query: 340 AVEELDAGKYDCWLGNT 356
            +   D+G Y+  + +T
Sbjct: 66  NLTRDDSGTYNVTVYST 82

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 6/76 (7%)

Query: 276 SVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG 335
            +  L      G+ + L C V+  A  A   +            +   R        +  
Sbjct: 8   ELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR------GEKELKREPAVGEPAEVT 61

Query: 336 LVIMAVEELDAGKYDC 351
             ++   +    ++ C
Sbjct: 62  TTVLVRRDHHGAQFSC 77

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            TV+ GQ V L+C          +P   +       +   +       +   G L + +V
Sbjct: 6   LTVSQGQPVKLNC----SVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 61

Query: 342 EELDAGKYDCWLGNTV 357
           E  DAG+Y C + +  
Sbjct: 62  ERSDAGRYWCQVEDGG 77

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 20/87 (22%), Positives = 25/87 (28%), Gaps = 14/87 (16%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  GQ V + C V         P     +S +                 D GLVI  V
Sbjct: 13  IVVKQGQDVTIPCKVT------GLPAPNVVWSHNAKPLS-----GGRATVTDSGLVIKGV 61

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
           +  D G Y C   N          + V
Sbjct: 62  KNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            TV  G+S   SC          +P+    + +         R             I +V
Sbjct: 9   MTVYEGESARFSCDTD------GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 62

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTV 365
           +  D G Y   + N          LT+
Sbjct: 63  QASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
             V  G +    C V+             +  K+   +QI +  +              V
Sbjct: 18  MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTI-----SEV 72

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDA 367
              D  KY C   N      CT  L V+ 
Sbjct: 73  CGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAV 341
            T   GQSV L C     A    +P   +    +    + +             L I  V
Sbjct: 15  ATANLGQSVTLVC----DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 70

Query: 342 EELDAGKYDCWLGN---TVLCTHNLTVDA 367
           ++ D  +Y C   N       + +L V A
Sbjct: 71  DKNDEAEYVCIAENKAGEQDASIHLKVFA 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1olza2	478	Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1shyb1	476	Hepatocyte growth factor receptor {Human (Homo sap	100.0
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.22
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.06
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.04
d2avga1	110	Cardiac myosin binding protein C, different domain	98.95
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.95
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.89
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.85
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.84
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.83
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.83
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.82
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.82
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.8
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.79
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.77
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.76
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.75
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.73
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.72
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.71
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.64
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.63
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.6
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.56
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.54
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.54
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.53
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.5
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.48
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.47
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.46
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.46
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.45
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.43
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.43
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.42
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.42
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.41
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.41
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.4
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.33
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.25
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.24
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.24
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.21
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.17
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.16
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.15
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.08
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.98
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.97
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.96
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.86
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.85
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.76
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.74
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.67
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.66
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.66
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.58
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.54
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.53
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.51
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.42
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.38
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.35
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.34
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.33
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.3
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.24
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.21
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.2
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.19
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.17
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.15
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.13
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.12
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.12
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.07
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.07
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.03
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.01
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.98
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.96
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.95
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.91
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.9
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.9
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.85
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.83
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.83
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.83
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.82
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.81
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.81
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.81
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.8
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.78
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.77
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.75
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.74
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.74
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.72
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.72
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.71
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.7
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.7
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.68
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.67
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.67
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.66
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.66
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.65
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.64
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.63
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.63
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.62
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.61
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.6
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.57
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.56
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.53
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.51
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.5
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.48
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.41
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.4
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.37
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.35
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.24
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.19
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.19
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.03
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.0
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.92
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.87
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.79
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.79
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	95.35
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.9
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	94.72
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	94.26
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	94.18
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	94.06
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.99
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	93.73
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	93.55
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	93.46
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.25
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.22
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	93.19
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.1
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	92.91
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	92.71
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.71
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	92.69
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.56
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	92.37
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.32
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	92.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	92.05
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.99
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.94
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.93
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	91.85
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	91.71
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.57
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	91.46
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	91.45
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.43
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	90.99
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.92
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	90.9
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	90.88
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.77
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.63
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	90.45
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.42
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	90.28
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	90.27
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.24
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	90.21
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	90.12
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.1
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.06
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.06
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.02
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	89.96
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	89.83
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.75
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	89.75
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	89.64
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	89.59
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	89.59
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	89.57
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	89.46
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.43
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	89.35
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	89.33
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	89.29
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.23
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.77
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.65
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	88.61
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	88.58
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	88.56
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.32
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.24
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	87.73
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	87.69
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	87.27
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	86.68
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	85.64
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	85.62
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	84.69
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	84.66
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	82.02
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	80.14

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-58  Score=473.12  Aligned_cols=245  Identities=37%  Similarity=0.702  Sum_probs=220.6

Q ss_pred             CeEEEEEccccce----ee------eeeccccccCC--CCCceEEEEEe-------CCEEEEEEEeccccccccCceeee
Q psy10772          8 RSLYVASDERIKQ----IA------LVMCAHRYDNC--LQPDFVGSYDI-------GKYVFFFFRETAVEYINCGKSVFS   68 (378)
Q Consensus         8 ~~l~v~~~~~~~~----~~------~~~rt~~~ds~--~~p~FV~sf~~-------~d~VYFfF~E~a~e~~~~~~~~~s   68 (378)
                      +.||+|+...-..    +.      ..+||++++++  ++|+||++|.+       ++||||||+|++.|.+..++.++|
T Consensus       159 g~LY~gt~~~~~~~~~~i~R~~~~~~~~~t~~~~~~~l~~p~Fv~s~~i~~~~~~~~~~vYfff~e~~~e~~~~~~~~~s  238 (495)
T d1q47a_         159 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHA  238 (495)
T ss_dssp             TEEEEEEECSTTSCCEEEEEEESSSCCEECCSSCTTTCSSCEEEEEEEECCSSSGGGCEEEEEEEEECCCCSSCCCCEEE
T ss_pred             CeEEEEeccCcCCCCceEEecCCCCccccchhhhhhhcCCccceeeeeeccccCCCCCEEEEEEEEEehhcCCCCceeEE
Confidence            6899997654221    11      25689999998  99999999986       689999999999999889999999


Q ss_pred             eEeeccccccCCcccccccceeeeeeeeeccCCCC--CCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeee
Q psy10772         69 RVARVCKRDTGGKNILSQNWATYLKARLNCSIPGE--FPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        69 RVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~--~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      |||||||+|.||+++|+++||||+||||+|+.+|+  .+++||+||+|+.+.+   ++++|||+|+++++++++||||+|
T Consensus       239 RvaRVCk~D~GG~~~l~~~wtSf~ka~L~Cs~~g~~~~~~~fn~lq~~~~~~~~~~~~~vlygvFst~~~~~~~SAvC~f  318 (495)
T d1q47a_         239 RIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMY  318 (495)
T ss_dssp             EEEEEETTCCCBSSSSBTBCSSCEEEEBCCEECCTTSCCEECCEEEEEEEECCSSTTCCEEEEEEECSCSSSCCEEEEEE
T ss_pred             EEEEecccCcCccccccccccEEEEEEEEeecCCCCCccccchhhheeEEeccCCCCCcEEEEEeeccCCCCCceEEEEe
Confidence            99999999999999999999999999999999986  3689999999998753   467999999999999999999999


Q ss_pred             eHHHHHHHhccccccccCCCCceeeccCCCCCCCCCCCCCCC-------CCCCCcccceeeccccCcccccccCCCceeE
Q psy10772        144 SIEDIERAFVGKFKEQATSTSAWLPVLSSRVPEPRPGQCVND-------TETLPDSVLNFIRSHPLMDEAVAHRDNKPVF  216 (378)
Q Consensus       144 sl~dI~~~F~g~f~~~~~~~~~w~~~~~~~vP~prpg~C~~~-------s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll  216 (378)
                      +|+||+++|+|+|+++....+.|..+ .+++|.|+||.|.+.       +.++||++++|++.||||.++|.|+.++|+|
T Consensus       319 sl~~I~~~F~g~~~~~~~~~~~~~~~-~~~~p~~~~g~c~~~~~~~~~~s~~~~d~~l~f~~~~pl~~~~v~p~~~~pll  397 (495)
T d1q47a_         319 SMSDVRRVFLGPYAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIM  397 (495)
T ss_dssp             CHHHHHHHHTSCBEECSSTTBCCEEC-CSCCCSSCTTCCCCSSTTSCSCGGGCCHHHHHHHHTCCBBSSCBCCGGGSCSE
T ss_pred             EHHHHHHHhhhhhhhhcCCCcccccc-cCCCCcCCCccCCCCcccccCccccCCcccccccccccccccccCccCCcceE
Confidence            99999999999999999999999984 899999999999754       4578999999999999999999999999999


Q ss_pred             EecCC--cceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        217 YRRDL--LFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       217 ~~~~~--~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      ++.+.  +||+||||++++.    +++|+|+||||++|+||||
T Consensus       398 ~~~~~~~~~T~iav~~v~~~----~~~~tV~flGT~~G~l~Kv  436 (495)
T d1q47a_         398 IKTDVNYQFTQIVVDRVDAE----DGQYDVMFIGTDVGTVLKV  436 (495)
T ss_dssp             EESSSSSCEEEEEEEEEECS----SCEEEEEEEEETTSCEEEE
T ss_pred             EecCccceeEEEEEEEEecc----CCcEEEEEEEcCCCEEEEE
Confidence            98754  7999999999876    5789999999999999998

>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-58  Score=471.03  Aligned_cols=244  Identities=33%  Similarity=0.616  Sum_probs=215.3

Q ss_pred             CeEEEEEccccceee----e-----eeccccccCC--CCCceEEEEEe----------CCEEEEEEEeccccccccCcee
Q psy10772          8 RSLYVASDERIKQIA----L-----VMCAHRYDNC--LQPDFVGSYDI----------GKYVFFFFRETAVEYINCGKSV   66 (378)
Q Consensus         8 ~~l~v~~~~~~~~~~----~-----~~rt~~~ds~--~~p~FV~sf~~----------~d~VYFfF~E~a~e~~~~~~~~   66 (378)
                      +.||||+...-....    +     .++|+ ++++  ++|+||+++.+          ++||||||+|.+.|...+++.+
T Consensus       148 g~lY~gt~~~~~~~~~~i~r~~~~~~~~t~-~~~~~l~~p~fv~~~~i~~~~~~~f~~~~~vYFff~e~~~e~~~~~~~~  226 (478)
T d1olza2         148 GELYSGTSYNFLGSEPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVL  226 (478)
T ss_dssp             TEEEEEEESSTTSCSEEEEEECSSCCBCCC-SSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCE
T ss_pred             CeEEEEEecCcCCCCceEEecCCCCCccch-hhhhcccCCceEEEeeecccccccccCCCEEEEEEEEEeccCCCCCcee
Confidence            689999975433322    1     23443 5565  89999999776          7999999999999999999999


Q ss_pred             eeeEeeccccccCCcccccccceeeeeeeeeccCCCCCCcccceeeeEEeecC---CCcEEEEEEecccCCCCceeeeee
Q psy10772         67 FSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEFPFYFNEIQDIYKVPG---DDTKFYGVFTTSTTGLMGSAICSF  143 (378)
Q Consensus        67 ~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~~~~fn~lq~v~~~~~---~~~~ly~vFtt~~~~~~~SAVC~y  143 (378)
                      +||||||||+|.||+++|+++||||+||||+|+.++. +++||+||||++++.   ++++|||+|+++++++++||||+|
T Consensus       227 ~SRvaRvCk~D~GG~~~l~~~wtSy~ka~L~Cs~~~~-~~~yn~lq~a~~~~~~~~~~~vly~vFst~~~~~~~SAvC~f  305 (478)
T d1olza2         227 IPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDS-GLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAY  305 (478)
T ss_dssp             EEEEEEEETTCCCCSSSSTTSCSSCEEEEECCEEGGG-TEECCEEEEEEEECCTTCSSCEEEEEEECSSSCSSEEEEEEE
T ss_pred             eeeeehhccCCcCCccccccceeEEEEEEEEeccCCC-CCCCcceeEEEEecCCCCCCcEEEEEEcCCCCCCCccEEEEe
Confidence            9999999999999999999999999999999998854 689999999999753   367999999999999999999999


Q ss_pred             eHHHHHHHhc-ccccccc---CCCCceeeccCCCCCCCCCCCCCCC---------CCCCCcccceeeccccCcccccccC
Q psy10772        144 SIEDIERAFV-GKFKEQA---TSTSAWLPVLSSRVPEPRPGQCVND---------TETLPDSVLNFIRSHPLMDEAVAHR  210 (378)
Q Consensus       144 sl~dI~~~F~-g~f~~~~---~~~~~w~~~~~~~vP~prpg~C~~~---------s~~~pd~~l~fi~~hpLm~~~V~P~  210 (378)
                      +|+||+++|+ |.|+++.   .....|.. +.+++|.||||.|..+         +.++|+++++|++.||||.+.|.|+
T Consensus       306 sl~~I~~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~f~~~~plm~~~V~p~  384 (478)
T d1olza2         306 NLSTAEEVFSHGKYMQSTTVEQSHTKWVR-YNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPI  384 (478)
T ss_dssp             EHHHHHHHHHHSCBEEEECCSTTCCEEEE-CCSCCCSSCTTCCCCHHHHTTTCCSGGGSCHHHHHHHHHCCEEEEEECCG
T ss_pred             EHHHHHHHHhhcchhhccCCCCCcccccc-cCCcCCcCCCcccCCCcccccccCCCccCCccceeeecccCCcccccccc
Confidence            9999999997 8888763   45688987 5899999999999864         4578999999999999999999999


Q ss_pred             CCceeEEecCCcceEEEEEEEEeeeecCCCeEEEEEEECCCeeEEEE
Q psy10772        211 DNKPVFYRRDLLFTHLVVDVVQYEVFGTTSEYIVYFAATTTLRTVFV  257 (378)
Q Consensus       211 ~~~Pll~~~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT~~G~v~~V  257 (378)
                      .++|+|++.+.+||+||||++++.+   +.+|||+||||++|+||||
T Consensus       385 ~~~pll~~~~~~~T~IaV~~v~~~~---~~~~tV~flGT~~G~i~Kv  428 (478)
T d1olza2         385 DNRPRLIKKDVNYTQIVVDRTQALD---GTVYDVMFVSTDRGALHKA  428 (478)
T ss_dssp             GGSCSEEEESCCEEEEEEEEEECTT---SCEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEecCCcEEEEEEEEEecCC---CCEEEEEEEECCCceEEEE
Confidence            9999999999999999999998764   6789999999999999998

>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-47  Score=386.10  Aligned_cols=197  Identities=19%  Similarity=0.323  Sum_probs=153.1

Q ss_pred             CCCceEEEEEeCCEEEEEEEeccccccccCceeeeeEeeccccccCCcccccccceeeeeeeeeccCCCCC------Ccc
Q psy10772         34 LQPDFVGSYDIGKYVFFFFRETAVEYINCGKSVFSRVARVCKRDTGGKNILSQNWATYLKARLNCSIPGEF------PFY  107 (378)
Q Consensus        34 ~~p~FV~sf~~~d~VYFfF~E~a~e~~~~~~~~~sRVaRVCk~D~GG~~~L~~~wtSflKarL~Cs~~g~~------~~~  107 (378)
                      +.|+||++|+.++||||||+|++.+.   ++.++||||||||||.|        |+||+||||+|+.|+..      .++
T Consensus       206 ~~~~fV~~F~~~~~vYF~f~e~~~~~---~~~~~SRvaRVCk~D~~--------wtSy~ka~L~Cs~p~~~p~~~~~~~~  274 (476)
T d1shyb1         206 YPIKYVHAFESNNFIYFLTVQRETLD---AQTFHTRIIRFCSINSG--------LHSYMEMPLECILTELVPRGSTKKEV  274 (476)
T ss_dssp             SCCEEEEEEEETTEEEEEEECCSSTT---CSCCCEEEEEEECCTTC--------CCSCEEEEEEEECC---------CCB
T ss_pred             cCcceEeeeccCCEEEEEEEeccccc---cccceeEEEEEeccCCC--------cceEEEEEEEEecCCcccccCCCCcc
Confidence            57999999999999999999998763   57899999999999987        99999999999998653      489


Q ss_pred             cceeeeEEeec------------CCCcEEEEEEecccCC----CCceeeeeeeHHHHHHHhccccccccCCCCceeeccC
Q psy10772        108 FNEIQDIYKVP------------GDDTKFYGVFTTSTTG----LMGSAICSFSIEDIERAFVGKFKEQATSTSAWLPVLS  171 (378)
Q Consensus       108 fn~lq~v~~~~------------~~~~~ly~vFtt~~~~----~~~SAVC~ysl~dI~~~F~g~f~~~~~~~~~w~~~~~  171 (378)
                      ||+|||||+.+            .++++|||||+++++.    +.+||||+|+|+||+++|+|.|+++......|.    
T Consensus       275 fN~lQ~~~v~~pg~~La~~l~~~~~~~vlygvFsts~~~~~~~~~~SAVC~fsl~dI~~~F~~~~~~~~~~~~~~~----  350 (476)
T d1shyb1         275 FNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHF----  350 (476)
T ss_dssp             CCCCCEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECTTSSSEEEEEEEEEEEHHHHHHHHHCC----CBCCCTTT----
T ss_pred             cceeeEEEecCcchhhhhhcCCCCCCCEEEEEEcCCcCCCCCCCCCcEEEEEEHHHHHHHHhhhhhccccCCCcee----
Confidence            99999999864            3578999999987643    346999999999999999999988766666664    


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccceeeccccCcccccccCCCceeEEe--cCCcceEEEEEEEEeeeecCCCeEEEEEEEC
Q psy10772        172 SRVPEPRPGQCVNDTETLPDSVLNFIRSHPLMDEAVAHRDNKPVFYR--RDLLFTHLVVDVVQYEVFGTTSEYIVYFAAT  249 (378)
Q Consensus       172 ~~vP~prpg~C~~~s~~~pd~~l~fi~~hpLm~~~V~P~~~~Pll~~--~~~~~T~IaVd~v~~~~~~~~~~ytV~flGT  249 (378)
                         |.|+|+.|.+.+.. ++........++.|.+.+.|+.+.|++++  .+.+||+|+|+++        ++|+|+||||
T Consensus       351 ---~~p~~~~c~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~pl~~~~~~~~~~Tsi~v~~~--------~~~tV~flGT  418 (476)
T d1shyb1         351 ---YGPNHEHCFNRTLL-RNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIK--------GDLTIANLGT  418 (476)
T ss_dssp             ---SCSSSTTTTCC--------------CCCCEEBSSCEEEECSSTTTTTTSCEEEEEEEEE--------TTEEEEEEEE
T ss_pred             ---eCCCCCcCcCCCcC-CCCCCcccccCCCcccccCcccCccceeeccCCeeEEEEEEeec--------CCeEEEEEEC
Confidence               46889999876532 23323334444555566778889999986  3678999999983        7899999999


Q ss_pred             CCeeEEEE
Q psy10772        250 TTLRTVFV  257 (378)
Q Consensus       250 ~~G~v~~V  257 (378)
                      ++|+||||
T Consensus       419 ~~G~l~Kv  426 (476)
T d1shyb1         419 SEGRFMQV  426 (476)
T ss_dssp             TTSEEEEE
T ss_pred             CCcEEEEE
Confidence            99999998

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.6e-12  Score=98.33  Aligned_cols=81  Identities=23%  Similarity=0.328  Sum_probs=64.7

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      ..|.+++.+|+++.|+|.+++|+    |.+.|++++.+     |....+.+.+..+++|.|.+++.+|+|.|.|.+.|  
T Consensus         3 ~~~~~~~~~G~~~~l~C~~~g~~----~~v~W~~~g~~-----l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~   73 (92)
T d1olza1           3 SYRQHFFKHGGTAELKCSQKSNL----ARVFWKFQNGV-----LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV   73 (92)
T ss_dssp             EEEEEEEETTSCEEECCCCSCTT----CEEEEEESSSB-----CCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             ChhheeEeCCCEEEEEEEeeccC----CceeeecCccc-----ceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcC
Confidence            35778999999999999998754    37999998765     43333344445566799999999999999999997  


Q ss_pred             ------eeeEEEeeeecc
Q psy10772        356 ------TVLCTHNLTVDA  367 (378)
Q Consensus       356 ------~~l~~~~~~v~~  367 (378)
                            ..|+.|.|+|..
T Consensus        74 g~~~~~~~l~~~~l~v~~   91 (92)
T d1olza1          74 KNKTVFQVVAKHVLEVKV   91 (92)
T ss_dssp             SSSEEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEEEeeE
Confidence                  678999998864

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.06  E-value=1.7e-10  Score=89.19  Aligned_cols=75  Identities=29%  Similarity=0.393  Sum_probs=59.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      +.+.+.+|+++.|.|...+.+.   |.|+|++++.+     |   .+.++...+++|.|.+++..|+|.|.|.+.|   .
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~---p~v~W~~~~~~-----i---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPA---PNVVWSHNAKP-----L---SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD   79 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESC---CCCEEEETTEE-----C---CSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             CCEEEeCCCeEEEEEEEEEeCC---CEEEEEeCCcc-----C---ccccEEEeeeeEEECCCChhhCEEEEEEEEECCCE
Confidence            4567888999999999876554   68999998764     5   3456677889999999999999999999987   4


Q ss_pred             eeEEEeeee
Q psy10772        357 VLCTHNLTV  365 (378)
Q Consensus       357 ~l~~~~~~v  365 (378)
                      .-++..|+|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1biha4          80 KYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            455555544

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.04  E-value=1.9e-10  Score=88.89  Aligned_cols=79  Identities=24%  Similarity=0.370  Sum_probs=64.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+..|+++.|.|...+.+.   |.|+|++|+.+     |.  +++++....+.|.|.+++.+|+|.|.|.+.|   
T Consensus         8 ~~~~~v~~G~~~~l~C~~~g~P~---p~v~W~k~g~~-----i~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVASGKPR---PAVRWLRDGQP-----LA--SQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             CCCEEEETTCCEEEECEEEEESC---CEEEEEETTEE-----CC--CCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCEEECCCCcEEEEEEEEEEcC---CEEEEEEeecc-----cc--ccceeeeeeeeEEEEeecccCCEEEEEEEEeCCC
Confidence            35678899999999999976544   68999998754     54  5667777788899999999999999999987   


Q ss_pred             eeeEEEeeeecc
Q psy10772        356 TVLCTHNLTVDA  367 (378)
Q Consensus       356 ~~l~~~~~~v~~  367 (378)
                      ...++-.|+|.+
T Consensus        78 ~~~~~~~l~V~A   89 (89)
T d1cs6a4          78 TVYASAELTVQA   89 (89)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEC
Confidence            666777888764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.5e-10  Score=87.66  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe----------ecCceEEeeecCCCCeE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT----------VDGGLVIMAVEELDAGK  348 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~----------~~~GLlI~~v~~~DsG~  348 (378)
                      .+.+++..|+++.|.|...+.+.+..|.|.|+.++...    +......++..          ...-|.|.+++.+|+|.
T Consensus        11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1          11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVD----LSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCC----STTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceee----ecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            45688999999999999987765555789998765320    10001111111          11239999999999999


Q ss_pred             EEEEeCC---eeeEEEeeeeccc
Q psy10772        349 YDCWLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       349 Y~C~~~~---~~l~~~~~~v~~~  368 (378)
                      |.|.+.|   ..-|+.+|+|.+.
T Consensus        87 Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          87 YRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEEECCCeEEEEEEEEEEec
Confidence            9999977   7899999999864

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.2e-10  Score=87.50  Aligned_cols=80  Identities=26%  Similarity=0.319  Sum_probs=61.6

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      ....+++.+|+++.|.|.....+.  +++++|+.++.+     +.  .+.+.. ..+.-|.|.+++.+|+|.|.|.+.|.
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~g~~~--~~~i~W~k~~~~-----l~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1          12 ARGVLTSLPGDSVTLTCPGVEPED--NATVHWVLRKPA-----AG--SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CTTEEEECTTCCEEEECTTSCTTC--CSEEEEEEECSS-----SS--CCCEEEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCCCEEEeCCCcEEEEEEeecCCC--CceEEEEEcccc-----cc--ceeeEEecCCCEEEECCCChhcCEEEEEEECCc
Confidence            456788899999999998764322  247999998765     32  333333 34455999999999999999999999


Q ss_pred             eeEEEeeeec
Q psy10772        357 VLCTHNLTVD  366 (378)
Q Consensus       357 ~l~~~~~~v~  366 (378)
                      ..++..|.||
T Consensus        83 ~~~t~~l~V~   92 (93)
T d1n26a1          83 PAGTVHLLVD   92 (93)
T ss_dssp             CSCEEEEEEC
T ss_pred             cccEEEEEEE
Confidence            8899999887

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.2e-09  Score=85.79  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEeccc------CceeeEeeccCcceEeecCceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKD------KGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~------~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+++.+|+++.|.|...+.+.+..|.|.|+.++..      ..+.++....+........-|.|.+++.+|+|.|.|.
T Consensus         7 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (113)
T d2dava1           7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   86 (113)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEE
Confidence            4568899999999999998766554568999987532      1111111000000000112399999999999999999


Q ss_pred             eCC---eeeEEEeeeecccccCCCC
Q psy10772        353 LGN---TVLCTHNLTVDAHSNVADA  374 (378)
Q Consensus       353 ~~~---~~l~~~~~~v~~~~c~~~~  374 (378)
                      +.|   ..-++..|+|.+..-.+|.
T Consensus        87 a~N~~G~~~~~~~L~V~~~~~~~p~  111 (113)
T d2dava1          87 VTYKDKFDSCSFDLEVHESTGTTPN  111 (113)
T ss_dssp             EECSSCEEEECCEEEEECCCCSCCC
T ss_pred             EEeCCCEEEEEEEEEEEcCCCcCCC
Confidence            986   7789999999888766664

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.1e-09  Score=83.45  Aligned_cols=85  Identities=26%  Similarity=0.345  Sum_probs=64.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--eecCc--eEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TVDGG--LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~G--LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|+|...+.+.   +.|+|++++.+     |.  .++++.  ..+++  |.|.+++.+|+|.|.|.+.
T Consensus         7 p~~~~v~~G~~~~l~C~v~g~p~---p~v~W~k~~~~-----l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   76 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKVTGTQP---ITCTWMKFRKQ-----IQ--ESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   76 (101)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSS---CEEEEEESSSB-----CC--CSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEEEecCC---CEEEEEeCcee-----ec--cCCcEEEEEecceeEEEEeeCCcccCEEEEEEEE
Confidence            35678899999999999876544   68999998765     43  333322  22222  9999999999999999999


Q ss_pred             C---eeeEEEeeeecccccCCCC
Q psy10772        355 N---TVLCTHNLTVDAHSNVADA  374 (378)
Q Consensus       355 ~---~~l~~~~~~v~~~~c~~~~  374 (378)
                      |   ..-++..|+|.+.+ .+|.
T Consensus        77 N~~G~~~~~~~l~V~~~P-~pP~   98 (101)
T d2cqva1          77 NKLGSRQAQVNLTVVDKP-DPPA   98 (101)
T ss_dssp             CSSCEEECCEEEEEECSC-SCCC
T ss_pred             ECCCEEEEEEEEEEEecC-CCcC
Confidence            8   77888899998765 3443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.2e-09  Score=84.71  Aligned_cols=78  Identities=19%  Similarity=0.312  Sum_probs=56.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+.+|+++.|.|...+.+.   |.|+|++++.+     +......++... ++-|.|.+++..|+|.|.|.+.|   
T Consensus         9 ~~~~v~~G~~~~l~C~v~g~p~---p~v~W~~~~~~-----i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           9 TPQEFKEGEDAVIVCDVVSSLP---PTIIWKHKGRD-----VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SSEECCTTSCEEECCEEECSSC---CEEEEEETTEE-----GGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CCEEEeCCCcEEEEEEEeecCC---CeEEEEEcCcc-----cccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            4578889999999999876654   68999998754     332223334433 34599999999999999999876   


Q ss_pred             eeeEEEeeee
Q psy10772        356 TVLCTHNLTV  365 (378)
Q Consensus       356 ~~l~~~~~~v  365 (378)
                      .......|+|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            3455555555

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.84  E-value=2.8e-09  Score=83.80  Aligned_cols=79  Identities=25%  Similarity=0.414  Sum_probs=61.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--eecCc---eEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TVDGG---LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~G---LlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|++|+.+     |.  .++++.  ..++|   |.|.+++..|+|.|.|.+
T Consensus        15 ~~~~~v~~G~~~~l~C~~~g~P~---p~v~W~k~~~~-----i~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKVEGYPD---PEVMWFKDDNP-----VK--ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEeccC---CeEEEEeeecc-----cc--ceeeEeEEEecCceeeeEecCCCHHhCEEEEEEE
Confidence            45678899999999999975544   68999998764     43  333322  22333   999999999999999999


Q ss_pred             CC---eeeEEEeeeecc
Q psy10772        354 GN---TVLCTHNLTVDA  367 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~  367 (378)
                      .|   ...++..|.|+.
T Consensus        85 ~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          85 VNSLGEATCTAELLVET  101 (102)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            86   788888888875

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.6e-09  Score=80.36  Aligned_cols=80  Identities=21%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~  353 (378)
                      +.+.+.+..|+++.|.|....|    .|++.|++++.+     +......++....+    -|.|.+++.+|+|.|.|.+
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~~p----~~~v~W~k~~~~-----~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVSED----DANVKWFKNGEE-----IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECSSS----SCCCEEEETTEE-----CCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEE
T ss_pred             CCCCEEEeCCCcEEEEEEECCC----CceEEEEEeecc-----cCCCCCccEEEEEeCCccEEEECccccccCEEEEEEE
Confidence            3567889999999999998433    358999998754     32112223333322    3999999999999999999


Q ss_pred             CCeeeEEEeeeecc
Q psy10772        354 GNTVLCTHNLTVDA  367 (378)
Q Consensus       354 ~~~~l~~~~~~v~~  367 (378)
                      .| .-++-.|+|++
T Consensus        77 ~n-~~~~a~l~V~~   89 (90)
T d1x44a1          77 TG-GQSSAKLSVDL   89 (90)
T ss_dssp             TT-EEEEEEEEEEC
T ss_pred             ec-ceEEEEEEEEE
Confidence            97 45777888865

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=83.32  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=57.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--e--cCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--V--DGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~--~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|.|++++.+     |.  .+.++..  .  ..-|.|.+++..|+|.|.|.+.
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~---p~v~W~~~g~~-----l~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   75 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPV---PTVTWLRKGQV-----LS--TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   75 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSC---CCCEEESSSST-----TC--SSSSCEEEECSSEEEEECSSCCSCCCEEEEEECB
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeC---CeEEEEEeecc-----cc--cccceeeeeecceeEEeecCCCHHHCEEEEEEEE
Confidence            46688999999999999875544   68999998765     32  2222111  1  2239999999999999999998


Q ss_pred             C---eeeEEEeeeec
Q psy10772        355 N---TVLCTHNLTVD  366 (378)
Q Consensus       355 ~---~~l~~~~~~v~  366 (378)
                      |   ..-++..|+|.
T Consensus        76 N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          76 NSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CSSCBCCEEEEEECC
T ss_pred             ECCCEEEEEEEEEEE
Confidence            8   56677777775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.82  E-value=3e-09  Score=82.07  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|+.++..     +    ..++...+.-|.|.+++.+|+|.|.|.+.|   
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~~~~-----~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPV---PQIKWRKLDGS-----Q----TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESC---CEEEEEECCSC-----C----SCCCSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEecCCcEEEEEEEEEccC---CEEEEEecccc-----c----ceEeeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            35788999999999999976654   68999987543     1    112233455699999999999999999987   


Q ss_pred             eeeEEEeeeec
Q psy10772        356 TVLCTHNLTVD  366 (378)
Q Consensus       356 ~~l~~~~~~v~  366 (378)
                      ..-++..|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1cs6a3          80 RDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            55667777664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=7.1e-09  Score=79.03  Aligned_cols=78  Identities=26%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      .+.+.+.+|+++.|.|...+.  .+.|.|+|+.++..     +.   ..+....+.-|.|.+++..|+|.|.|.+.|   
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~--~p~~~v~W~k~~~~-----~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSK--SPAYTLVWTRLHNG-----KL---PSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEES--SSCCEEEEEEGGGB-----CC---CTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCeEEEeCCCcEEEEEEccCC--CCCCEEEEecCCce-----ee---ccccEeeceEEEEecCCcccCEEEEEEEEECCC
Confidence            456788999999999998632  12358999988754     32   223445566799999999999999999998   


Q ss_pred             eeeEEEeeeec
Q psy10772        356 TVLCTHNLTVD  366 (378)
Q Consensus       356 ~~l~~~~~~v~  366 (378)
                      ..-++..|.|.
T Consensus        79 ~~~~~~~l~V~   89 (89)
T d1gl4b_          79 MDQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            55666677663

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.80  E-value=2.4e-09  Score=83.43  Aligned_cols=79  Identities=24%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.|+|++++.+     |.  .+.++.....    -|.|.+++..|+|.|.|.+.
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~---p~v~W~~~~~~-----l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSP---PVVTWHKDDRE-----LK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSC---CEEEEEETTEE-----CC--SBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCC---CEEEEEEeeec-----cc--eeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence            35678899999999999876544   68999998754     43  3333332222    29999999999999999998


Q ss_pred             C---eeeEEEeeeecc
Q psy10772        355 N---TVLCTHNLTVDA  367 (378)
Q Consensus       355 ~---~~l~~~~~~v~~  367 (378)
                      |   ..-++-.|+|..
T Consensus        78 N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          78 NSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             ETTEEEEEEECCEEEC
T ss_pred             ECCCEEEEEEEEEEee
Confidence            7   566777777753

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.79  E-value=3e-09  Score=82.22  Aligned_cols=79  Identities=11%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe-ecC---ceEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT-VDG---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~-~~~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+.+.+..|+++.|.|...+.+.   |.++|+.++..     |.  .++++.. ...   -|.|.+++.+|+|.|.|.+
T Consensus         8 ~~~~~~v~~G~~~~l~c~~~g~P~---p~v~W~~~~~~-----i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           8 ASRKIKIKAGFTHNLEVDFIGAPD---PTATWTVGDSG-----AA--LAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCCEEEECSSBCCEEEEEEECCSS---CEEEEECSSSS-----CB--CSTTSEEEEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecC---CeEEEEeeeee-----ce--eeeeeeecccccceeeccccccccccEEEEEEE
Confidence            346788999999999999986655   68999998764     43  3333222 222   2899999999999999999


Q ss_pred             CC---eeeEEEeeeec
Q psy10772        354 GN---TVLCTHNLTVD  366 (378)
Q Consensus       354 ~~---~~l~~~~~~v~  366 (378)
                      .|   ..-++..|.|+
T Consensus        78 ~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          78 KNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEC
Confidence            88   66777777763

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.77  E-value=4.3e-09  Score=82.12  Aligned_cols=80  Identities=21%  Similarity=0.311  Sum_probs=56.6

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccC-cceEe--ecCceEEeeecCCCCeEEEEEeC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSD-KFIRT--VDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~-~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+..|+++.|.|...+.+.   |.|+|++|+.+     |..... ..+..  ...-|.|.+++.+|+|.|.|.+.
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~g~P~---p~i~W~kng~~-----l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (97)
T d3dara1          11 EKRLHAVPAANTVKFRCPAGGNPM---PTMRWLKNGKE-----FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE   82 (97)
T ss_dssp             SCCEEEECTTCCEEEECCEEEESC---CEEEEEETTEE-----CCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccEEECCCCcEEEEEEEeEECC---CEEEEEECCEe-----ccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEE
Confidence            345567888999999999876544   68999998765     431111 11111  22349999999999999999998


Q ss_pred             C---eeeEEEeeee
Q psy10772        355 N---TVLCTHNLTV  365 (378)
Q Consensus       355 ~---~~l~~~~~~v  365 (378)
                      |   ..-++..|+|
T Consensus        83 N~~G~~~~~~~l~V   96 (97)
T d3dara1          83 NEYGSINHTYHLDV   96 (97)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            7   5566666665

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.76  E-value=1.4e-09  Score=84.03  Aligned_cols=78  Identities=15%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEe
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~  353 (378)
                      +.+.+.+.+|+++.|.|....|    .|.++|++|+.+     |.  +++++.....|    |.|.+++.+|+|.|.|.+
T Consensus         7 ~l~d~~v~~G~~~~~~c~vs~p----~~~v~W~k~g~~-----i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIELSEP----DVHGQWKLKGQP-----LT--ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBCSSS----SCCCBCCSSSCC-----CC--SSSSCEEEECSSCEEEECCSCCSCCCSEECCBC
T ss_pred             CCcCEEEeCCCcEEEEEEECCC----CcEEEEEEeeee-----cc--cceeEEEEeeceeEEEEEcCCChhcCEEEEEEE
Confidence            3567899999999999997432    257999998875     43  44444333333    999999999999999999


Q ss_pred             CCeeeEEEeeeecc
Q psy10772        354 GNTVLCTHNLTVDA  367 (378)
Q Consensus       354 ~~~~l~~~~~~v~~  367 (378)
                      .| .-++-.|+|.+
T Consensus        76 ~n-~~~sa~l~V~e   88 (89)
T d1tiua_          76 AN-AKSAANLKVKE   88 (89)
T ss_dssp             SS-CBCCEEEEEEC
T ss_pred             Cc-eEEEEEEEEEE
Confidence            86 45777888865

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.76  E-value=6.3e-09  Score=81.10  Aligned_cols=79  Identities=24%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE--eecCc---eEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR--TVDGG---LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~--~~~~G---LlI~~v~~~DsG~Y~C~~  353 (378)
                      .+.+.+.+|+.+.|.|...+.+.   |.|+|++++.+     |.  +++++.  ..++|   |.|.+++..|+|.|.|.+
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~---p~v~W~k~~~~-----i~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPD---PECEWYKNGVK-----IE--RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESC---CEEEEEETTEE-----CC--CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecC---CeEEEEeCceE-----Ee--eeeeeEEEeccceEEEEEeccCccccCEEEEEEE
Confidence            45678899999999999875544   68999998754     43  333322  22333   899999999999999999


Q ss_pred             CC---eeeEEEeeeecc
Q psy10772        354 GN---TVLCTHNLTVDA  367 (378)
Q Consensus       354 ~~---~~l~~~~~~v~~  367 (378)
                      .|   ..-++-.|.|..
T Consensus        81 ~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          81 INIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            87   666777787764

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.6e-08  Score=78.40  Aligned_cols=75  Identities=23%  Similarity=0.446  Sum_probs=54.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEEEeCCeee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDCWLGNTVL  358 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C~~~~~~l  358 (378)
                      ..+.+|+++.|.|....|    .|.|+|++|+.+     |...........++|   |.|.+++..|+|.|.|.+.|. -
T Consensus        16 ~~v~~G~~v~l~c~v~~p----~~~v~W~k~g~~-----i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-~   85 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELADH----DAEVKWLKNGQE-----IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-K   85 (94)
T ss_dssp             EEEETTSCEEEEEECSSS----SSCCEEEESSSE-----ECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-E
T ss_pred             EEECcCCeEEEEEEECCC----CceEEEEEcCcc-----ceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-E
Confidence            468899999999998433    358999999865     542122223333333   999999999999999999874 4


Q ss_pred             EEEeeeec
Q psy10772        359 CTHNLTVD  366 (378)
Q Consensus       359 ~~~~~~v~  366 (378)
                      ++-.|.|.
T Consensus        86 ~s~~l~V~   93 (94)
T d1pd6a_          86 CSTELFVK   93 (94)
T ss_dssp             ECCEEEEE
T ss_pred             EEEEEEEE
Confidence            66667664

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.73  E-value=1.4e-08  Score=79.04  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe----ecCceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT----VDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~----~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+..|+++.|+|...+.+.   |.|.|+.++.+     |...+..++..    ...-|.|.+++.+|+|.|.|.+.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~---~~v~W~k~g~~-----i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   81 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPM---GYPNYFKNGKD-----VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD   81 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSC---CCCEEEETTEE-----CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEecCCeEEEEEEEEEecC---CEEEEEEeeee-----ccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEE
Confidence            35688899999999999876543   68999998764     32112222211    12238999999999999999999


Q ss_pred             Ce---ee-EEEeeee
Q psy10772        355 NT---VL-CTHNLTV  365 (378)
Q Consensus       355 ~~---~l-~~~~~~v  365 (378)
                      |.   .. .+..|+|
T Consensus        82 N~~G~~~s~s~~L~V   96 (97)
T d1biha3          82 NGVGKPQKHSLKLTV   96 (97)
T ss_dssp             CSSSSCEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEEE
Confidence            82   23 3556665

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=80.56  Aligned_cols=92  Identities=12%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             cccccccceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEE
Q psy10772        272 ICESSVGRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       272 ~C~~~~~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C  351 (378)
                      +|....+...+.+.+|+.+.|+|....  +.+.+.|+|+.++.+..   +......++...+.-|.|.+++.+|+|.|.|
T Consensus         2 ~~~~~~~~~~~~~~~~e~~~l~C~~~~--~~~~~~i~W~k~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   76 (101)
T d1iray1           2 KCKEREEKIILVSSANEIDVRPCPLNP--NEHKGTITWYKDDSKTP---VSTEQASRIHQHKEKLWFVPAKVEDSGHYYC   76 (101)
T ss_dssp             CSCCEECCCCEEEETTSCEEECCCCCG--GGCSSEEEEECSSTTSB---CCCCTTSSEEEETTEEEETTCCGGGCEEEEE
T ss_pred             CceecCCCcEEEEeCCCeEEEEeeCCC--CCCCceEEEEECCcccc---cccccceEEeccCCEEEeccceecCCEEEEE
Confidence            566544555677888999999997631  22346899998875411   1112333455556669999999999999999


Q ss_pred             EeCC---eeeEEEeeeeccc
Q psy10772        352 WLGN---TVLCTHNLTVDAH  368 (378)
Q Consensus       352 ~~~~---~~l~~~~~~v~~~  368 (378)
                      .+.|   ..-++..|+|.+.
T Consensus        77 ~a~N~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          77 VVRNSSYCLRIKISAKFVEN   96 (101)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEECCCCeEEEEEEEEEEeC
Confidence            9987   6667888888654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.71  E-value=5.2e-09  Score=82.98  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceE-eecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIR-TVDGG-LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~-~~~~G-LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+.+.+|+++.|.|.+.  .+.+.|.|+|++++.+     +....+.++. ....| |.|.+++.+|+|.|.|.+.|
T Consensus        11 ~~~v~v~eG~~~~l~C~~~--~~~p~~~v~W~k~g~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPP--PHYPALSYRWLLNEFP-----NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCCEEEETTSCEEECCCCC--SEESCCEEEEEESSTT-----CBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEcc--CCCCCCEEEEEEeecc-----ccccccceeeeecCCCEEeecccccccCcEEEEEEEE
Confidence            3457899999999999862  2233468999998865     3222333333 33344 99999999999999999986

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-08  Score=76.85  Aligned_cols=66  Identities=29%  Similarity=0.459  Sum_probs=49.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc--ceEeecC----ceEEeeecCCCCeEEEEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK--FIRTVDG----GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~--~~~~~~~----GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ..+++.+|+++.|.|...+.+.   |.|+|++++.+     |.  .+.  ++...++    -|.|.+++.+|+|.|.|.+
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~---p~v~W~k~g~~-----l~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   73 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEE---PDIQWVKDGAV-----VQ--NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV   73 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSS---CCEEEEETTEE-----CC--SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             eeEEEcCCCeEEEEEEEEecCC---ceEEEEEeecc-----cc--cceeeeeeecccCceeeEEECCCCcccCEEEEEEE
Confidence            5688999999999999975544   68999998754     32  111  2222222    2889999999999999999


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .|
T Consensus        74 ~N   75 (91)
T d1rhfa1          74 ED   75 (91)
T ss_dssp             SS
T ss_pred             EE
Confidence            88

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.63  E-value=5e-08  Score=76.57  Aligned_cols=83  Identities=25%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec------c--CcceEee---cCceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR------S--DKFIRTV---DGGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~------~--~~~~~~~---~~GLlI~~v~~~DsG  347 (378)
                      .+.+++..|+++.|.|.+++.+.   |.|.|+.++...+.. +...      .  .......   ..=|.|.+++.+|+|
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~---p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   87 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQ---PHIQWIKHVEKNGSK-YGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG   87 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSC---CEEEEEEEC--------------CEEEECCEEEEETTEEEEEEEECSCCGGGCE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCC---CeEEEEecCccCCce-eccCCceeEeecccceeEEecCCcEEEEECCCCHHHCe
Confidence            46789999999999999986654   689999875432110 1100      0  0000011   122999999999999


Q ss_pred             EEEEEeCC---eeeEEEeeee
Q psy10772        348 KYDCWLGN---TVLCTHNLTV  365 (378)
Q Consensus       348 ~Y~C~~~~---~~l~~~~~~v  365 (378)
                      .|.|.+.|   ...++-.|+|
T Consensus        88 ~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          88 EYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            99999987   6666666665

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.9e-08  Score=74.59  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---eeeE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---TVLC  359 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~~l~  359 (378)
                      .+.+|+++.|.|...+.+.   |.|.|+.++..     +        .....-|.|.+++.+|+|.|.|.+.|   ...+
T Consensus        10 ~v~~G~~~~L~C~~~g~p~---P~i~W~~~~~~-----~--------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~   73 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSS---PSVQCRSPRGK-----N--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF   73 (84)
T ss_dssp             CEETTCCEEEEEECCTTCC---CEEEEECTTCC-----E--------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEECCCeEEEEEEeEcCCc---hheEEEeeccc-----c--------eeeeeeeeeeecccccccEEEEEEEeCCCEEEE
Confidence            5788999999999865544   79999875432     2        22344588999999999999999997   6666


Q ss_pred             EEeeeecc
Q psy10772        360 THNLTVDA  367 (378)
Q Consensus       360 ~~~~~v~~  367 (378)
                      ...|+|.+
T Consensus        74 ~~~v~V~~   81 (84)
T d2nxyb2          74 KIDIVVLA   81 (84)
T ss_dssp             EEEECEEC
T ss_pred             EEEEEEEe
Confidence            67777654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.5e-08  Score=76.89  Aligned_cols=78  Identities=28%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec--cCcceEee--cCceEEeeecCCCCeEEEEEeCC--
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR--SDKFIRTV--DGGLVIMAVEELDAGKYDCWLGN--  355 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~--~~~~~~~~--~~GLlI~~v~~~DsG~Y~C~~~~--  355 (378)
                      .++..|+++.|.|...+.+.   |.|+|++++.+     |...  ...+....  ..-|.|.+++.+|+|.|.|.+.|  
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~---p~i~W~~~g~~-----i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   86 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPE---PTMSWTKDGEP-----IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKA   86 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESC---CEEEEEETTEE-----CCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEcCCCCEEEEEEEEEecC---CEEEEEeCCcc-----cccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECC
Confidence            45567999999999975544   68999998764     3211  11222222  23399999999999999999987  


Q ss_pred             -eeeEEEeeeecc
Q psy10772        356 -TVLCTHNLTVDA  367 (378)
Q Consensus       356 -~~l~~~~~~v~~  367 (378)
                       +.-++..|+|-+
T Consensus        87 G~~~~~~~l~V~~   99 (100)
T d1qz1a3          87 GEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEE
Confidence             566777777753

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.7e-08  Score=74.34  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCceEEeeecCCCCeEEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGGLVIMAVEELDAGKYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~GLlI~~v~~~DsG~Y~C~~~~---  355 (378)
                      ..+.+..|+++.|.|...+.+.   |.++|.+++..     +.  .+.. ......-|.|.+++.+|+|.|.|.+.|   
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~---p~i~W~~~~~~-----~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCES---PFFSWRTQIDS-----PL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSS---CEEEEEETTCC-----CC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CcEEEECCCEEEEEEeccCCCC---ceEEEEecCcc-----ce--eeeeeeecCCcEEEEecccccccceEEEEEEeCCC
Confidence            3456678999999999976544   78999987653     21  1111 111223399999999999999999997   


Q ss_pred             eeeEEEeeee
Q psy10772        356 TVLCTHNLTV  365 (378)
Q Consensus       356 ~~l~~~~~~v  365 (378)
                      ..-.+-.|+|
T Consensus        79 ~~~~~~~v~V   88 (90)
T d1vcaa2          79 KLEKGIQVEI   88 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4444444443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.2e-08  Score=75.66  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCc-ceEeecC------ceEEeeecCCCCeEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDK-FIRTVDG------GLVIMAVEELDAGKYDC  351 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~-~~~~~~~------GLlI~~v~~~DsG~Y~C  351 (378)
                      ....++..|+++.|.|.+++.+.  .|.|+|+.++..     +....+. +.....+      -|.|.+++.+|+|.|.|
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~--~P~v~W~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCAN--RPHVTWCKLNGT-----TCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSS--CCEEEEEEECSS-----CEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCC--CCEEEEEecCcc-----cccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            45578899999999999986543  258999988754     2111111 2222222      28999999999999999


Q ss_pred             EeCC
Q psy10772        352 WLGN  355 (378)
Q Consensus       352 ~~~~  355 (378)
                      .+.|
T Consensus        83 ~A~N   86 (104)
T d2aw2a1          83 SANF   86 (104)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9997

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.54  E-value=3.9e-08  Score=75.65  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+.+.+|+++.|.|...+.+.  ++.+.|+.++..     |........... +.-|.|.+++.+|+|.|.|.+.|
T Consensus         9 p~~~~v~~g~~~~l~C~~~g~p~--p~~v~W~~~g~~-----l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           9 PAEVLFRENNPTVLECIIEGNDQ--GVKYSWKKDGKS-----YNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CSEEEEETTSCEEECCCEESCCS--SCEEEEEESSSB-----CCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEecCCCC--eeEEEEEeeeee-----eeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            35678899999999999875543  125899998765     431111122222 23499999999999999999987

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.4e-08  Score=78.08  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=53.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-----eEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-----QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-----~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+.+.+|+++.|.|..++.+.   |.|.|++++.+....     ........+.......|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSS---PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMV   87 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSS---EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCC---CeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEE
Confidence            45677889999999999976544   689999986541110     0111123344555667999999999999999999


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .|
T Consensus        88 ~n   89 (105)
T d1nbqa1          88 SE   89 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=4.3e-08  Score=75.89  Aligned_cols=65  Identities=25%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec--CceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD--GGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~--~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ....+.+|+++.|.|....++    +++.|++++.+     |.  .+.+.....  .-|.|.+++..|+|.|.|.+.|
T Consensus        11 ~~~~v~~g~~v~l~C~~~~~~----~~v~W~~~~~~-----l~--~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSNDIG----ANIQWLFNSQS-----LQ--LTERMTLSQNNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             SCSEECTTSCEEEEECCCCSS----CEEEEEETTEE-----CC--CCTTEEEETTTTEEEECSCCGGGCEEEEEEEES
T ss_pred             CceEEeCCCeEEEEEccCCCC----CCEEEEEeeee-----cc--cccceeccCCceEEEEeccchhhceEEEEEEEe
Confidence            445788999999999986542    47999998764     43  333333333  3399999999999999999998

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.5e-08  Score=74.05  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=46.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec----CceEEeeecCCCCeEEEEEeC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD----GGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~----~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+.+.+.+|+++.|.|...+.+.   |.+.|....+.. . .+.  .........    .-|.|.+++.+|+|.|.|.+.
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~---p~~~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTV---AGDRLWLQGIDV-R-DAP--LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCC---SSCEEEEEETTB-C-CCC--EEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCC---CcEEEEEeeeee-e-eec--CCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            46788999999999999876554   456665543220 0 011  111111222    239999999999999999998


Q ss_pred             C
Q psy10772        355 N  355 (378)
Q Consensus       355 ~  355 (378)
                      |
T Consensus        81 N   81 (96)
T d2c9aa1          81 T   81 (96)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.50  E-value=9.2e-08  Score=73.50  Aligned_cols=73  Identities=21%  Similarity=0.200  Sum_probs=50.4

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC--eee-
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN--TVL-  358 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~--~~l-  358 (378)
                      ..+.+|+++.|.|....  +.+.+.+.|+.|+..     +.  .    .....-|.|.+++.+|+|.|.|.+.|  ... 
T Consensus        12 ~~v~eG~~v~L~C~~~~--~~p~~~~~W~kng~~-----~~--~----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWK--NTALHKVTYLQNGKD-----RK--Y----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             SEEETTCCEEEEEEECT--TCCCEEEEEEETTEE-----EE--E----EEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEccCCeEEEEEEecC--CCCCcEEEEEEcccc-----cc--e----eccccccEECccceeccceEEEEEEeCCCCeE
Confidence            34789999999998742  222347899987754     43  1    12244688999999999999999876  222 


Q ss_pred             -EEEeeeecc
Q psy10772        359 -CTHNLTVDA  367 (378)
Q Consensus       359 -~~~~~~v~~  367 (378)
                       ...+|+|.+
T Consensus        79 S~~v~itV~E   88 (89)
T d1fnla2          79 SETVNITITQ   88 (89)
T ss_dssp             CCCEEEEEEC
T ss_pred             EeeEEEEEEe
Confidence             345666654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.4e-07  Score=73.48  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee-----eEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY-----QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~-----~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+.+.+|+++.|.|...+.+.   |.|.|++++......     .+......+.......|.|.+++.+|+|.|.|.+
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a   84 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSS---PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMV   84 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSS---EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCC---CeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEE
Confidence            45688999999999999865443   689999876541110     0111122344445556999999999999999998


Q ss_pred             CC
Q psy10772        354 GN  355 (378)
Q Consensus       354 ~~  355 (378)
                      .|
T Consensus        85 ~n   86 (102)
T d1f97a1          85 SE   86 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.8e-08  Score=77.60  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCe-EEEEEeCC---
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAG-KYDCWLGN---  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG-~Y~C~~~~---  355 (378)
                      +.+.+.+|+++.|.|...+.+.   |.|+|++++.+     +..............|.|.+++.+|+| .|.|.+.|   
T Consensus        10 ~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQVEGRGL---EQAGWILTELE-----QSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSC---CCCCEEESCCC-----SSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEeCCCEEEEeeeccCCCC---cEEEEEECCce-----eeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            4556788999999999876544   78999998754     211011111223446999999999999 69999998   


Q ss_pred             eeeEEEeeee
Q psy10772        356 TVLCTHNLTV  365 (378)
Q Consensus       356 ~~l~~~~~~v  365 (378)
                      ..-++..|+|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            5555555554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-08  Score=80.79  Aligned_cols=88  Identities=16%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             eeEEEEeCCeeeeeeeecc-CCCCCCCCeEEEEecccCceeeEeeccCcceEe----ecCc----eEEeeecCCC-CeEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKL-PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT----VDGG----LVIMAVEELD-AGKY  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~-~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~----~~~G----LlI~~v~~~D-sG~Y  349 (378)
                      +.+.+.+|+++.|.|...+ ++.   +.+.|+.++..     |......++..    ..+|    |.|.+++.+| +|.|
T Consensus        14 ~~~~~~~G~~~~l~C~v~~~~p~---~~v~W~~~~~~-----i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1          14 QTQHALHGEKGQIKCFIRSTPPP---DRIAWSWKENV-----LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             CCCCCCTTSCCCCCEEECCSSCC---SEEEEESSSCE-----ECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEEEecCCEEEEEEEeecCCCe---eEEEEeeeeee-----EeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            4566788999999999875 333   36899987654     32111112211    2222    9999999999 7999


Q ss_pred             EEEeCC---eeeEEEeeeecccccCCCCC
Q psy10772        350 DCWLGN---TVLCTHNLTVDAHSNVADAP  375 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~~v~~~~c~~~~~  375 (378)
                      .|.+.|   ..-++..|.|...+-..|.+
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~~~~~~~P~~  114 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQGSEMSGPSS  114 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCSCSSCCCCCC
T ss_pred             EEEEEECCCeEEEEEEEEEECCCCCCCCC
Confidence            999998   78999999999888877764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.2e-07  Score=71.06  Aligned_cols=82  Identities=12%  Similarity=0.053  Sum_probs=52.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEee--ccCcceEe-ecC-ceEEeeecCCCCeEEEEE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKF--RSDKFIRT-VDG-GLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~--~~~~~~~~-~~~-GLlI~~v~~~DsG~Y~C~  352 (378)
                      +.+.+..|+++.|.|....    +.+.|.|++++......   ....  ....+... ... -|.|.+++.+|+|.|.|.
T Consensus         3 ~~v~~~~G~sVtl~c~~~~----p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSNV----PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEEEETTCCEEECCCCSS----CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             cEEEEEECCCEEEEecCCC----CCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEE
Confidence            5688999999999997633    23589999876431000   0111  11112221 122 399999999999999999


Q ss_pred             eCC-eeeEEEeeee
Q psy10772        353 LGN-TVLCTHNLTV  365 (378)
Q Consensus       353 ~~~-~~l~~~~~~v  365 (378)
                      +.+ ..-..+.|.|
T Consensus        79 ~~n~~~t~~~~l~V   92 (93)
T d1ccza1          79 SPNITDTMKFFLYV   92 (93)
T ss_dssp             CTTCCSCEEEEEEE
T ss_pred             EECCCcEEEEEEEE
Confidence            987 4444566655

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=2.3e-07  Score=71.73  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=52.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe--ec---CceEEeeecCCCCeEEEEEe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT--VD---GGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~--~~---~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      ...+.+..|+++.|.|...+.+..  |.|.|+.++..    .+. ..++++..  .+   .-|.|.+++..|+|.|.|.+
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~--~~v~W~~~~g~----~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKD--KDISWFSPNGE----KLS-PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCC--CEEEEECTTSC----EEC-CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCC--CEEEEEEeeee----eee-eccccEEEEeecCcceEEEcccCchhhceEEEEEE
Confidence            345678899999999998755432  47999875422    122 12233222  11   23999999999999999999


Q ss_pred             CC---e-eeEEEeeee
Q psy10772        354 GN---T-VLCTHNLTV  365 (378)
Q Consensus       354 ~~---~-~l~~~~~~v  365 (378)
                      .|   + .-++-.|+|
T Consensus        80 ~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          80 TAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EETTTEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEE
Confidence            76   2 234455544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.8e-07  Score=72.92  Aligned_cols=69  Identities=22%  Similarity=0.362  Sum_probs=50.6

Q ss_pred             eEEEEeCCeeeeeeeec---cCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVK---LPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r---~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+..|.+..|.|...   ...+-+.|.|+|++++.+     |.. .+.++...++.|.|.+++.+|+|.|.|.+.|
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~-----l~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP-----LLL-DNIHFSGVKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEE-----CCC-CSSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCcc-----ccC-CCcEEEecCCEEEEcccccccCcEEEEEEEE
Confidence            35677899999999311   122334468999998765     431 3335566677899999999999999999975

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.7e-07  Score=75.08  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=57.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eE-------------------eeccCcceEe--ecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QI-------------------KFRSDKFIRT--VDG  334 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l-------------------~~~~~~~~~~--~~~  334 (378)
                      ...+.+..|+++.|.|...+.+.   |.|+|+.++......   ..                   ..+.+.++..  ...
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   92 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPA---PTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKD   92 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSC---CEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETT
T ss_pred             CCCEEEEcCCeEEEEEEEEEecC---CeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCC
Confidence            35678999999999999976655   689999876431000   00                   0011112221  111


Q ss_pred             --ceEEeeecCCCCeEEEEEeCC---eeeEEEeeeecc
Q psy10772        335 --GLVIMAVEELDAGKYDCWLGN---TVLCTHNLTVDA  367 (378)
Q Consensus       335 --GLlI~~v~~~DsG~Y~C~~~~---~~l~~~~~~v~~  367 (378)
                        -|.|.+++.+|+|.|.|.+.|   ..-+...|.|-+
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence              299999999999999999987   677777777743

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.6e-07  Score=70.76  Aligned_cols=85  Identities=18%  Similarity=0.282  Sum_probs=55.1

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecC----ceEEeeec-CCCCeEEEEE
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDG----GLVIMAVE-ELDAGKYDCW  352 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~----GLlI~~v~-~~DsG~Y~C~  352 (378)
                      ..+.+.+.+|+++.|.|...+.+.  +..++|+.+...... .+....+.++.....    -|.|.+++ .+|+|.|.|.
T Consensus         8 ~~~~~~v~~G~~v~l~C~v~g~P~--p~~i~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~   84 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKSESVPP--VTDWAWYKITDSEDK-ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN   84 (101)
T ss_dssp             SCSEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCE-ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEE
T ss_pred             cCCcEEECcCCeEEEEEEEEecCC--eeEEEEEeccceeee-ecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEE
Confidence            346778899999999999876543  125899887543221 121112233333222    38899998 5799999999


Q ss_pred             eCC---eeeEEEeeee
Q psy10772        353 LGN---TVLCTHNLTV  365 (378)
Q Consensus       353 ~~~---~~l~~~~~~v  365 (378)
                      +.|   ..-++..|.|
T Consensus        85 A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          85 GTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            998   4555555555

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.9e-07  Score=71.95  Aligned_cols=76  Identities=21%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+.+..|+++.|.|...+  ..+.|.++|...+.+-+.  .      +......-|.|.+++..|+|.|.|.+.|   .
T Consensus        11 ~~~~~~~G~~~~l~C~~~~--g~p~p~v~W~~~~~~~~~--~------~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLAC--ADRGASVQWRGLDTSLGA--V------QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             SEEEEETTCCEEEEEEECC--SSTTCEEEEESSTTTTCC--E------EEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEEeCCcEEEEEEecC--CCCccEEEEEEeeeeeee--e------eccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            4567788999999997632  223368999865544111  1      1111223399999999999999999987   3


Q ss_pred             eeEEEeeee
Q psy10772        357 VLCTHNLTV  365 (378)
Q Consensus       357 ~l~~~~~~v  365 (378)
                      .-.+-.|.|
T Consensus        81 ~~~s~~l~V   89 (90)
T d1gsma1          81 FQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            344444433

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=2.1e-07  Score=72.75  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee---eEeeccCcceEeecCc-eEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY---QIKFRSDKFIRTVDGG-LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~---~l~~~~~~~~~~~~~G-LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+.+..|++|.|+|.-- +.......|+|.+++..-..+   ......+++.....+| |.|.+++.+|+|.|.|...+
T Consensus         3 ~tV~G~~G~sV~L~~~~~-~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNF-QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEEEETTSCEEECCTTC-CCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             cEEEEecCCCEEEECCCC-CCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEe
Confidence            467899999999999521 111111358999875431000   0111134454554555 99999999999999999853


Q ss_pred             ---e--eeEEEeeeec
Q psy10772        356 ---T--VLCTHNLTVD  366 (378)
Q Consensus       356 ---~--~l~~~~~~v~  366 (378)
                         .  .-..+.|.|-
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence               2  2467777774

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.41  E-value=1.1e-07  Score=72.80  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe--ee--
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT--VL--  358 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~--~l--  358 (378)
                      .+.+|+++.|.|.....  .+.+.+.|++++..     +..  .    ....-|.|.+++.+|+|.|.|.+.|.  ..  
T Consensus        11 ~v~eG~~v~L~C~~~~~--~p~~~~~W~k~g~~-----~~~--~----~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKD--KPLVKVTFFQNGKS-----KKF--S----RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             EECTTCCEEEEEEEGGG--CCCEEEEEEETTEE-----EEE--E----SSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             eEecCCeEEEEEEecCC--CCCcEEEEEeeccc-----ccc--c----ccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            47789999999987432  22347899987654     431  1    12334889999999999999998872  22  


Q ss_pred             EEEeeeecc
Q psy10772        359 CTHNLTVDA  367 (378)
Q Consensus       359 ~~~~~~v~~  367 (378)
                      ....|+|..
T Consensus        78 ~~v~l~V~~   86 (88)
T d2fcba2          78 KPVTITVQA   86 (88)
T ss_dssp             CCEEEEECC
T ss_pred             eeEEEEEeC
Confidence            235566654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.41  E-value=7.7e-08  Score=74.55  Aligned_cols=67  Identities=30%  Similarity=0.498  Sum_probs=46.8

Q ss_pred             eEEEEeC---CeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEE-eeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWG---QSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVI-MAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G---~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI-~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+|   +++.|.|.+.+.+.   |.++|++|+.+     |....+.++......+|| ..++..|+|.|.|.+.|
T Consensus        13 ~~~~~~g~~~~~v~l~C~~~g~P~---p~v~W~~ng~~-----i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N   83 (97)
T d1cs6a1          13 HTLFPEGSAEEKVTLTCRARANPP---ATYRWKMNGTE-----LKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (97)
T ss_dssp             CEEEETTCSCCEEEECCEEEEESC---CEEEEEETTEE-----CCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CEEEECccCCCeEEEEEEEEEeCC---CEEEEEEeeee-----ccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEE
Confidence            3444444   78999999976554   68999998764     432233344444545554 55889999999999987

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=72.17  Aligned_cols=68  Identities=12%  Similarity=-0.104  Sum_probs=52.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC---e
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN---T  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~---~  356 (378)
                      ..+++.+|+++.|.|...+.+.   |.|+|+.++..     +.  +         .+.|.+++..|+|.|.|.+.|   +
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~---P~v~W~k~g~~-----~~--~---------~~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPL---PELKCLKDGTF-----PL--P---------IGESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESC---CEEEEEETTTE-----EC--C---------TTSCEECCGGGCEEEEEEEEETTEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCc---cEEEEEEeecc-----ce--e---------eeeeeccccCCCCEEEEEEEcCCCE
Confidence            5678999999999999987766   78999987643     21  1         223567899999999999998   5


Q ss_pred             eeEEEeeeec
Q psy10772        357 VLCTHNLTVD  366 (378)
Q Consensus       357 ~l~~~~~~v~  366 (378)
                      ......|+|.
T Consensus        73 ~~~~~~l~V~   82 (84)
T d2oz4a3          73 VTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5666666664

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.5e-07  Score=73.25  Aligned_cols=74  Identities=12%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             eCCeee---eeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc--eEee---------cCceEEeeecCCCCeEEEE
Q psy10772        286 WGQSVH---LSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF--IRTV---------DGGLVIMAVEELDAGKYDC  351 (378)
Q Consensus       286 ~G~s~~---L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~--~~~~---------~~GLlI~~v~~~DsG~Y~C  351 (378)
                      .|...+   ++|.+++.+.   |.|+|++|+.+     |.  .+++  ....         ..-|.|.+++..|+|.|.|
T Consensus        11 ~g~~~~~~ci~~~v~G~P~---P~v~W~~ng~~-----l~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   80 (107)
T d1he7a_          11 TAVEMHHWCIPFSVDGQPA---PSLRWLFNGSV-----LN--ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL   80 (107)
T ss_dssp             CCCCCCEEEEEEEECCSSC---CEEEEEETTEE-----CC--CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEE
T ss_pred             CCeEEEEEEEEEEEEEecC---CeEEEEEeeeE-----cc--CccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEE
Confidence            355555   4556665544   78999999865     32  1111  1111         1228999999999999999


Q ss_pred             EeCC---eeeEEEeeeecccc
Q psy10772        352 WLGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       352 ~~~~---~~l~~~~~~v~~~~  369 (378)
                      .+.|   ..-++..|.|.+.+
T Consensus        81 ~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          81 LAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             EEEETTEEEEEEEEECCCSCT
T ss_pred             EEEeCCCEEEEEEEEEEEcCC
Confidence            9998   67888888777554

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.8e-07  Score=68.79  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCC-CeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQ-PMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+.+.+.+|+++.|.|...+.+.   | +++|++++.+     |.  .+     ..+.++|......|+|.|.|.+.|
T Consensus         8 P~~~~v~~G~~~~l~C~~~g~P~---P~~i~W~k~g~~-----i~--~~-----~~~~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEAVGPPE---PVTIVWWRGTTK-----IG--GP-----APSPSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSS---CCEEEEEETTEE-----CS--CS-----EESSEEEEECCCSSCEEEEEEEEE
T ss_pred             CCcEEEcCCCEEEEEEEEecCCc---ceEEEEEECCEE-----CC--CC-----CCcceEEecCCccccEEEEEEEEc
Confidence            35678899999999999876654   4 6899998754     42  11     134567788888999999999998

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-07  Score=72.07  Aligned_cols=83  Identities=18%  Similarity=0.373  Sum_probs=51.9

Q ss_pred             eEEEEeCCeeeeeeeec-cCCCCCCCCeEEEEecccC---ceeeEeeccCcceEe-ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVK-LPASMANQPMSWYHYSKDK---GRYQIKFRSDKFIRT-VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r-~~~~La~~~v~W~~~~~~~---~~~~l~~~~~~~~~~-~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+..|+++.|.|... +.+   .|.++|++++..-   .++......+..... ...-|.|.+++..|+|.|.|.+.|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p---~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   87 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN   87 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred             CCEEecCCcEEEEEEeecCCC---CCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEE
Confidence            34677899999999874 333   3689999987651   110010001111111 122378999999999999999998


Q ss_pred             ---eeeEEEeeeec
Q psy10772        356 ---TVLCTHNLTVD  366 (378)
Q Consensus       356 ---~~l~~~~~~v~  366 (378)
                         ...++-.|.|+
T Consensus        88 ~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          88 GYGTPMTSNAVRME  101 (104)
T ss_dssp             SSSCCEECCCBCCE
T ss_pred             CCCceEEEEEEEEE
Confidence               55555555544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.7e-07  Score=69.91  Aligned_cols=74  Identities=20%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe--ee-
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT--VL-  358 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~--~l-  358 (378)
                      ..+.+|+++.|.|.....+.  .+.+.|+.++..     +.  ..    .....|.|.+++.+|+|.|.|.+.|.  .. 
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~--~~~~~w~k~g~~-----~~--~~----~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEA-----LK--YW----YENHNISITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCC--EEEEEEEETTEE-----CC--SC----CCSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCC--CeEEEEEEeeec-----cc--cc----cccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence            35788999999999864433  247899887753     32  11    12456999999999999999998762  22 


Q ss_pred             -EEEeeeeccc
Q psy10772        359 -CTHNLTVDAH  368 (378)
Q Consensus       359 -~~~~~~v~~~  368 (378)
                       ....|+|...
T Consensus        77 S~~v~i~V~~~   87 (89)
T d1f2qa2          77 SEPLNITVIKA   87 (89)
T ss_dssp             CCCEEEEEECS
T ss_pred             eeeEEEEEEeC
Confidence             2245666654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.4e-06  Score=68.35  Aligned_cols=71  Identities=21%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC---ceeeEeeccCcceEe--ecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK---GRYQIKFRSDKFIRT--VDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~---~~~~l~~~~~~~~~~--~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+..|+++.|.|....  .-+.+.++|++++.+.   ...............  ...-|.|.+++..|+|.|.|.+.|
T Consensus        13 ~v~~G~~v~L~C~~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHD--GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             EEETTSCEEEEEECSC--CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEecCCeEEEEEEeec--CCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEE
Confidence            5778999999998742  2233689999986531   000111001111111  122488999999999999999987

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.7e-06  Score=67.62  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=44.6

Q ss_pred             eeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcce--Ee------ecCceEEeeecCCCCeEEEEEeCC---eee
Q psy10772        290 VHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFI--RT------VDGGLVIMAVEELDAGKYDCWLGN---TVL  358 (378)
Q Consensus       290 ~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~--~~------~~~GLlI~~v~~~DsG~Y~C~~~~---~~l  358 (378)
                      .-|.|.+++.+.   |.++|++|+.+     |.  .+.++  ..      ...-|.|.+++..|+|.|.|.+.|   +.-
T Consensus        20 ~~i~~~v~G~P~---P~v~W~~n~~~-----i~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   89 (105)
T d1wwca_          20 HCIEFVVRGNPP---PTLHWLHNGQP-----LR--ESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTAN   89 (105)
T ss_dssp             EEEEEEEECSSC---CEEEEEETTEE-----CC--CSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEeCC---CeEEEEeCccc-----cC--CCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEE
Confidence            346677765444   68999998764     32  11111  11      122389999999999999999988   555


Q ss_pred             EEEeeeec
Q psy10772        359 CTHNLTVD  366 (378)
Q Consensus       359 ~~~~~~v~  366 (378)
                      ++..|.|.
T Consensus        90 ~~~~v~V~   97 (105)
T d1wwca_          90 QTINGHFL   97 (105)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEEEE
Confidence            66666664

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.3e-06  Score=66.92  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEe----e-----cCceEEeeecCCCCeEEEEEeCC-
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRT----V-----DGGLVIMAVEELDAGKYDCWLGN-  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~----~-----~~GLlI~~v~~~DsG~Y~C~~~~-  355 (378)
                      .++..-+.|.+++.+.   |.|+|++++.+     |.  .++++..    .     ..-|.|.+++..|+|.|.|.+.| 
T Consensus        15 ~~~~~~i~~~v~G~P~---P~i~W~~~g~~-----l~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPK---PALQWFYNGAI-----LN--ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE   84 (103)
T ss_dssp             CCCEEEEEEEEECSSC---CEEEEEETTEE-----EC--CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             cceeEEEEEEEEEeCC---CEEEEEECCEE-----ee--eeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEecc
Confidence            4556668898876655   78999998764     43  2222111    1     11399999999999999999998 


Q ss_pred             --eeeEEEeeeecc
Q psy10772        356 --TVLCTHNLTVDA  367 (378)
Q Consensus       356 --~~l~~~~~~v~~  367 (378)
                        +.-++..|.|.+
T Consensus        85 ~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          85 YGKDEKQISAHFMG   98 (103)
T ss_dssp             SCEEEEEEEECCSC
T ss_pred             CCEEEEEEEEEEEe
Confidence              556666666654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.15  E-value=1.3e-06  Score=69.70  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             eEEEEeCCeeeeeeee-ccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cCceEEeeecCCCCe---EEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFV-KLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DGGLVIMAVEELDAG---KYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~-r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~GLlI~~v~~~DsG---~Y~C~~~~  355 (378)
                      ..++++|+++.|.|.+ .+.|.   |.+.|+.++..............++... +.-|.|.+|+..|+|   .|.|.|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPK---PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESC---CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCC---CEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEe
Confidence            3467899999999985 44433   6899999875411000000012233333 344999999999987   89999987

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=9.1e-06  Score=64.74  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe------ec----cCcceEee----cC---ceEEeee
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK------FR----SDKFIRTV----DG---GLVIMAV  341 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~------~~----~~~~~~~~----~~---GLlI~~v  341 (378)
                      .+.+.+..|+++.|+|.......+....|.|+.++...-.+.+.      ..    -..|....    ..   -|.|.+|
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            45588999999999998754444444468998765331111000      00    01122211    12   3999999


Q ss_pred             cCCCCeEEEEEeCC---eeeEEEeeeecccccC
Q psy10772        342 EELDAGKYDCWLGN---TVLCTHNLTVDAHSNV  371 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~---~~l~~~~~~v~~~~c~  371 (378)
                      +.+|+|.|.|...+   ..-+.-.|+|.+....
T Consensus        89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             chhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            99999999999865   3455567888875543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.8e-05  Score=60.82  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCcee----eEeecc---CcceEe----ecC---ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRY----QIKFRS---DKFIRT----VDG---GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~----~l~~~~---~~~~~~----~~~---GLlI~~v~~~D  345 (378)
                      +.+++.+|+++.|+|.-....+   ..+.|+.+.......    .+....   .+|+-.    .+.   .|.|.+|+.+|
T Consensus         2 ~~V~~~~G~svtL~C~~s~~~~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~D   78 (97)
T d2nxyb1           2 KVVLGKKGDTVELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIED   78 (97)
T ss_dssp             EEEEEETTSCEEECCBCSSSSC---CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGG
T ss_pred             cEEEEEcCCcEEEEEEEecCCC---ceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHH
Confidence            4678889999999998643333   478998754321000    000001   112111    122   39999999999


Q ss_pred             CeEEEEEeCCe
Q psy10772        346 AGKYDCWLGNT  356 (378)
Q Consensus       346 sG~Y~C~~~~~  356 (378)
                      +|.|.|...+.
T Consensus        79 sG~Y~C~v~~~   89 (97)
T d2nxyb1          79 SDTYICEVEDQ   89 (97)
T ss_dssp             CEEEEEEETTE
T ss_pred             CEEEEEEEecC
Confidence            99999999874

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.97  E-value=4.2e-06  Score=63.06  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=45.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGNT  356 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~~  356 (378)
                      ....+.+|+++.|.|.....+.  ...+.|++|+..     +.  .      ...-|.|.+++.+|+|.|.|.+.|.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~--~~~~~w~~~g~~-----~~--~------~~~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1          12 QWINVLQEDSVTLTCRGTHSPE--SDSIQWFHNGNL-----IP--T------HTQPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             CCSEEETTCEEEEEEECSSCCC--TTCCEEEETTEE-----CT--T------CCSSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCeEEcCCCeEEEEEEEeeccc--eeEEEeeccccc-----cc--c------cccceEEeeccccCCcEEEEECCCC
Confidence            3457889999999999864433  124677776543     32  1      2345899999999999999999973

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.96  E-value=4.2e-06  Score=63.04  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ....+.+|+++.|.|...+.+.   +.+.|.+.+..    .+.        ....-|.|.+++..|+|.|.|.+.+
T Consensus        13 ~~~~v~~G~~vtL~C~~~~~~~---~~~~~~~~~~~----~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGAYSPE---DNSTQWFHNES----LIS--------SQASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCSEEETTCCEEEEEECCCBTT---BCCCEEEETTE----EEE--------SSCSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCcEEeCCCeEEEEEEeccCCC---CeEEEEeeece----eee--------ecceeeEecCCcccCCEEEEEEccC
Confidence            3467889999999999865543   34455443221    132        1234589999999999999999987

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.7e-06  Score=62.41  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+.+|+++.|.|...+.+.   +...|.+.+..    .+.        ....-|.|.+++..|+|.|.|.+.+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~---~~~~~~~~~~~----~~~--------~~~~~l~i~~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1          10 WNRIFKGENVTLTCNGNNFFE---VSSTKWFHNGS----LSE--------ETNSSLNIVNAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             CSEEETTCCEEEECCTTCC-------CCEEEETTE----ECS--------CCSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CeEEeCCCeEEEEEEEeeeee---ecceeeeeeee----eee--------cccceeEECCCChhhCCcEEEEecC
Confidence            457889999999999876544   33445443321    131        1234499999999999999999987

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=8.8e-06  Score=63.31  Aligned_cols=81  Identities=19%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccC---c---eeeEee---ccCcceEeecCceEEeeecCCCCeE-E
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDK---G---RYQIKF---RSDKFIRTVDGGLVIMAVEELDAGK-Y  349 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~---~---~~~l~~---~~~~~~~~~~~GLlI~~v~~~DsG~-Y  349 (378)
                      +.+.+..|+++.|.|...+.+.   |.|.|++++..-   .   ......   ...........-|.|.+++..|.|. |
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~---p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y   86 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLS---DIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF   86 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTT---CEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCE
T ss_pred             CEEEEeCCCEEEEEEEeccCCC---CeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEE
Confidence            3456778999999999986654   689999986531   0   000000   0000000112249999999999995 9


Q ss_pred             EEEeCC---eeeEEEee
Q psy10772        350 DCWLGN---TVLCTHNL  363 (378)
Q Consensus       350 ~C~~~~---~~l~~~~~  363 (378)
                      .|.+.|   ..-+...|
T Consensus        87 ~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          87 TCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             EEEEECSSCEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEE
Confidence            999998   44444444

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.8e-05  Score=62.45  Aligned_cols=70  Identities=20%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-----------cCcceEeecCc-eEEeeecCCCCeEE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-----------SDKFIRTVDGG-LVIMAVEELDAGKY  349 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-----------~~~~~~~~~~G-LlI~~v~~~DsG~Y  349 (378)
                      .+++|++|.|.|.. .|..+  ..+.|+..........+. ..           -.+|.....+| |.|.+|+.+|+|.|
T Consensus        10 ~v~~G~~V~L~c~~-~p~~~--~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          10 QVAEDNNVLLLVHN-LPLAL--GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             SCCTTCCEEEEEES-CCTTC--SEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEE
T ss_pred             cccCCCCEEEEecC-CCCCc--eEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEE
Confidence            36789999999974 24332  368997643221111121 00           12355554455 99999999999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|...+
T Consensus        87 ~c~v~~   92 (107)
T d1l6za1          87 TLDMTD   92 (107)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999854

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.6e-05  Score=58.53  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCC-CCCeEEEEecccCceeeEe----------e----ccCcceEee----c---Cc
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMA-NQPMSWYHYSKDKGRYQIK----------F----RSDKFIRTV----D---GG  335 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La-~~~v~W~~~~~~~~~~~l~----------~----~~~~~~~~~----~---~G  335 (378)
                      +...+.+.+|+++.|+|..+.++... ...|.|++...+.....+.          .    +-.+|....    .   -.
T Consensus        10 p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~s   89 (124)
T d1eaja_          10 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS   89 (124)
T ss_dssp             SEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCC
T ss_pred             cCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEE
Confidence            44568889999999999875443322 2247898764331111000          0    001232221    1   13


Q ss_pred             eEEeeecCCCCeEEEEEeCC
Q psy10772        336 LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       336 LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      |.|.+++.+|+|.|.|...+
T Consensus        90 L~I~~v~~~D~G~Y~C~v~~  109 (124)
T d1eaja_          90 INVTNLQLSDIGTYQCKVKK  109 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             EEEcccEEccCEEEEEEEEE
Confidence            99999999999999999875

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=4.8e-05  Score=59.98  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=53.1

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC------ceEEeeecCC
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ..+.+++.+|+++.|+|.-........-.+.|+.+........+..       ....++.....      -|.|.+|+.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            3467899999999999975322111112467876543221111110       01122222211      3999999999


Q ss_pred             CCeEEEEEeCC---eeeEEEeeeecccc
Q psy10772        345 DAGKYDCWLGN---TVLCTHNLTVDAHS  369 (378)
Q Consensus       345 DsG~Y~C~~~~---~~l~~~~~~v~~~~  369 (378)
                      |+|.|.|....   ...-...|+|-++.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            99999998765   33345678877664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.4e-06  Score=63.78  Aligned_cols=73  Identities=10%  Similarity=0.143  Sum_probs=43.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeec---CceEEeeec-CCCCeEEEEEeCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVD---GGLVIMAVE-ELDAGKYDCWLGN  355 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~---~GLlI~~v~-~~DsG~Y~C~~~~  355 (378)
                      +...+.+|+.+.|.|.+.+-...+.+.|+|+.++.+     |............   ..+|+..+. ..|.|.|.|.|.|
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~-----i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n   84 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNET-----LHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL   84 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEE-----EEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEE
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEE-----eeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEe
Confidence            344677899999999997522222347899988764     4311111111111   124554554 4556799999997


Q ss_pred             ee
Q psy10772        356 TV  357 (378)
Q Consensus       356 ~~  357 (378)
                      +.
T Consensus        85 ~~   86 (106)
T d1zxqa1          85 DL   86 (106)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=0.00013  Score=57.17  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCceee-Eee---------cc---CcceEeec------CceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGRYQ-IKF---------RS---DKFIRTVD------GGLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~~~-l~~---------~~---~~~~~~~~------~GLlI  338 (378)
                      .+.+.+..|+++.|+|.-..+... ....|.|+++....+... +..         ..   .+|+....      -.|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            456789999999999976533322 223689987654321111 100         00   12333211      23999


Q ss_pred             eeecCCCCeEEEEEeCC
Q psy10772        339 MAVEELDAGKYDCWLGN  355 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~~  355 (378)
                      .+++.+|+|.|.|...+
T Consensus        86 ~~v~~~DsG~Y~C~v~~  102 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKN  102 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             CCCChHHCEEEEEEEEE
Confidence            99999999999998764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00021  Score=55.63  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee---cCc---eEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV---DGG---LVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~---~~G---LlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|+|.-. +.......+.|+.+........|..       ...+|+...   ..|   |.|.+|+.+|
T Consensus         3 ~~~v~~~~G~svtl~C~~~-~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYP-PTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             CEEEEECTTCCEEEEEECC-CCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CEEEEEcCCCCEEEEEEEC-CCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence            4678899999999999742 2222223467987643322221211       012233322   334   8999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|...
T Consensus        82 sG~Y~C~v~   90 (108)
T d1hkfa_          82 SGHYWCRIY   90 (108)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999864

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.3e-05  Score=61.24  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ...+.+|+++.|.|.+.+....|...|+|+.++.+     |....... .....-|.|..+...|+|.|.|.|.|
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~-----l~~~~~~~-~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE-----LKREPAVG-EPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE-----EEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEcccccc-----cccccccc-ccceEEEEEeeehhHCCCEEEEEEEe
Confidence            34577899999999987521112224788876653     43211111 11122377888888899999999987

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00015  Score=56.39  Aligned_cols=75  Identities=13%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCc--------eeeEeeccCc---ceEe--ecCceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKG--------RYQIKFRSDK---FIRT--VDGGLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~--------~~~l~~~~~~---~~~~--~~~GLlI~~v~~~Ds  346 (378)
                      +++.+..|+++.|+|.-..+++.....+.|+.......        ........+.   |...  .+-.|.|.+|+.+|+
T Consensus         2 ~~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           2 LKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC
T ss_pred             EEEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC
Confidence            46788999999999987655554433456665433211        0000000011   1111  233499999999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      |.|.|.-.
T Consensus        82 G~Y~C~V~   89 (110)
T d1ncna_          82 GLYQCIIH   89 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999964

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=4.4e-05  Score=59.27  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             eEEEEeCCeeeeeeeeccCC-CCCCCCeEEEEeccc-----CceeeEeeccCcceEeecCc---eEEeeecCCCCeEEEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPA-SMANQPMSWYHYSKD-----KGRYQIKFRSDKFIRTVDGG---LVIMAVEELDAGKYDC  351 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~-~La~~~v~W~~~~~~-----~~~~~l~~~~~~~~~~~~~G---LlI~~v~~~DsG~Y~C  351 (378)
                      .+++..|+++.|+|....+. .+..-.+.|..++..     .+...+..+-..|+.....|   |.|.+|+.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            36788899999999764322 111113455433221     11111111112244444556   9999999999999999


Q ss_pred             EeC
Q psy10772        352 WLG  354 (378)
Q Consensus       352 ~~~  354 (378)
                      ...
T Consensus        83 ~V~   85 (105)
T d1dr9a1          83 VVL   85 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.42  E-value=0.00026  Score=56.15  Aligned_cols=73  Identities=23%  Similarity=0.380  Sum_probs=47.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-c--C---ceEEeeecCCCCeEEEEEe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-D--G---GLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~--~---GLlI~~v~~~DsG~Y~C~~  353 (378)
                      +.+++.+|+++.|.|..+.. +.....+.|+.+...++...+ ...+.++... +  .   -|.|.+|+.+|+|.|.|-+
T Consensus         7 ~s~t~~~G~svtl~C~~s~~-s~~~~~i~WYrq~~g~~~~~~-~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   84 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDA-SYALGSTCWYRKKSGEGNEES-ISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL   84 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSC-SSCCCCEEEEEEETTSCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCC-cccCCceEEEEeeccceeeee-eccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence            45677889999999976432 222347899988644333323 2223333221 1  1   3999999999999999976


Q ss_pred             C
Q psy10772        354 G  354 (378)
Q Consensus       354 ~  354 (378)
                      .
T Consensus        85 ~   85 (112)
T d1sq2n_          85 G   85 (112)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00014  Score=57.49  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCC----CCCCeEEEEecccCceeeEee-c---------cCcceEeec------CceEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASM----ANQPMSWYHYSKDKGRYQIKF-R---------SDKFIRTVD------GGLVI  338 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~L----a~~~v~W~~~~~~~~~~~l~~-~---------~~~~~~~~~------~GLlI  338 (378)
                      .+.+++.+|++|.|+|.-..|...    ....+.|+.+....+...+.. .         -.+|+....      -.|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            467899999999999976433322    112467877654322211111 0         112333322      13999


Q ss_pred             eeecCCCCeEEEEEeC
Q psy10772        339 MAVEELDAGKYDCWLG  354 (378)
Q Consensus       339 ~~v~~~DsG~Y~C~~~  354 (378)
                      .+|+.+|+|.|.|...
T Consensus        88 ~~v~~~DsG~Y~C~v~  103 (121)
T d2g5ra1          88 RDARMSDAGRYFFRME  103 (121)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEE
Confidence            9999999999999984

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00018  Score=57.82  Aligned_cols=73  Identities=25%  Similarity=0.306  Sum_probs=46.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCce---eeE----------eec----cCcceEee-cC----ce
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGR---YQI----------KFR----SDKFIRTV-DG----GL  336 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~---~~l----------~~~----~~~~~~~~-~~----GL  336 (378)
                      .+.+.+.+|+++.|.|......+   ..+.|+.+...++.   ..|          ...    ..+++... ..    -|
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~---~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L   84 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVS---QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVL   84 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCS---SCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCccC---CCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEE
Confidence            45678889999999998865433   36899887533221   001          100    11222211 11    29


Q ss_pred             EEeeecCCCCeEEEEEeC
Q psy10772        337 VIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       337 lI~~v~~~DsG~Y~C~~~  354 (378)
                      .|.+++.+|+|.|.|.+.
T Consensus        85 ~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          85 TLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EESSCCGGGCEEEEEEEE
T ss_pred             EEcccccCCCEEEEeeEe
Confidence            999999999999999754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00045  Score=54.57  Aligned_cols=74  Identities=16%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE--------eeccCcceEeec--C-c---eEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI--------KFRSDKFIRTVD--G-G---LVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l--------~~~~~~~~~~~~--~-G---LlI~~v~~~  344 (378)
                      ...+.+.+|+++.|.|.......  ...+.|+.+...++...|        ....+.|+....  . +   |.|.+++.+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~--~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSE--DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCT--TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECCCCC--cceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            35678899999999998643211  235789887543333212        111333444322  2 1   899999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|.+.
T Consensus        84 Dsg~YyCa~~   93 (114)
T d3bp5a1          84 DSGIYLCGAI   93 (114)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            9999999764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00024  Score=54.82  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=44.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCC---CCeEEEEecccCceeeEee---------ccCcceEeec---Cc---eEEeee
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMAN---QPMSWYHYSKDKGRYQIKF---------RSDKFIRTVD---GG---LVIMAV  341 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~---~~v~W~~~~~~~~~~~l~~---------~~~~~~~~~~---~G---LlI~~v  341 (378)
                      +.+.+.+|++|.|+|.-..|.....   ..+.|+.+...... .+..         +...|+....   .|   |.|.+|
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQ-VVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCE-EEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccc-eeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            5689999999999998654433221   12345544332111 1111         1122332221   22   999999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|....
T Consensus        87 ~~~DsG~Y~C~v~~  100 (118)
T d1qfoa_          87 KPEDSGTYNFRFEI  100 (118)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ChhHCEEEEEEEEe
Confidence            99999999998754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.30  E-value=0.00035  Score=55.21  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEee-cC-----ceEEeeecCCCCeEEEEE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTV-DG-----GLVIMAVEELDAGKYDCW  352 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~-~~-----GLlI~~v~~~DsG~Y~C~  352 (378)
                      .+.+++.+|+++.|.|..... ......+.|+.+...+....+ +..+.++..+ +.     -|.|.+|+.+|+|.|.|.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~-~~~~~~~~Wyrq~~g~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   84 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDA-SFELKDTGWYRTKLGSTNEQS-ISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESC-SSCCCEEEEEEEETTCCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCC-cccCCccceeeeeccccceee-eeecccccceeECCCCceeeeecccccCCcceEeee
Confidence            356778899999999987532 222235899887543332222 2223333222 11     399999999999999998


Q ss_pred             eCC
Q psy10772        353 LGN  355 (378)
Q Consensus       353 ~~~  355 (378)
                      +..
T Consensus        85 ~~~   87 (113)
T d1vesa_          85 AFY   87 (113)
T ss_dssp             EEE
T ss_pred             eec
Confidence            753

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.24  E-value=0.00044  Score=54.46  Aligned_cols=75  Identities=21%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe----ec-----------cCcceEee---cC---ceE
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK----FR-----------SDKFIRTV---DG---GLV  337 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~----~~-----------~~~~~~~~---~~---GLl  337 (378)
                      .+.+.+.+|+++.|.|..++.+..  ..|.|+.+...++...|.    ..           +.+|....   ++   -|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~--~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKL--TSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCS--SEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCC--CceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            356788999999999998654332  358998775322211121    00           12232221   12   188


Q ss_pred             EeeecCCCCeEEEEEeCC
Q psy10772        338 IMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       338 I~~v~~~DsG~Y~C~~~~  355 (378)
                      |.+++.+|+|.|.|....
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.21  E-value=0.00052  Score=54.22  Aligned_cols=72  Identities=19%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--c-----cCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--R-----SDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~-----~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      ...+++.+|+++.|.|......+   ..+.|+.+...++..-|-.  .     ..+++...      .--|.|.+++.+|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~---~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYS---PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSS---CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEeCCCc---CCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            45678999999999999754332   4799988754433321210  0     12222221      1229999999999


Q ss_pred             CeEEEEEe
Q psy10772        346 AGKYDCWL  353 (378)
Q Consensus       346 sG~Y~C~~  353 (378)
                      +|.|.|-+
T Consensus        85 sg~YyCa~   92 (115)
T d1lp9e1          85 SALYYCAL   92 (115)
T ss_dssp             CEEEEEEE
T ss_pred             CccceEEE
Confidence            99999965

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.20  E-value=0.00059  Score=53.80  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeecC----ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVDG----GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~~----GLlI~~v~~~  344 (378)
                      .+.+++.+|+++.|.|.......   ..+.|+.+...++...|-.          ....+......    -|.|.+|+.+
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~---~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSAT---PYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSC---CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEEcCCCC---CCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            45688999999999998753322   3678987643322221210          01111111111    2999999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|-..
T Consensus        84 Dsg~YyCa~~   93 (115)
T d1i9ea_          84 DSAVYFCAVS   93 (115)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceeccccc
Confidence            9999999654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.00048  Score=53.93  Aligned_cols=73  Identities=14%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|.......   ..+.|+.+...++...|-.       ....++.....+    |.|.+++.+|+|.
T Consensus         9 ~sl~~~~G~svtL~C~~s~~~~---~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~   85 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQGVT---SALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFAT   85 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CEEEECCCCCEEEEEEECCCCC---ccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCce
Confidence            4577889999999998754432   4789988865443332321       012233333222    9999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|-+..
T Consensus        86 YyCa~~~   92 (107)
T d1tjgl1          86 YYCQQLH   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEECc
Confidence            9997654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.17  E-value=0.00073  Score=53.03  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c-------cCcc--eEeecCc----eEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R-------SDKF--IRTVDGG----LVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~-------~~~~--~~~~~~G----LlI~~v~~~  344 (378)
                      ...+.+.+|++|.|.|.......  ...+.|+.+...++...|-. .       ...+  +.....+    |.|.+++.+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDT--TYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV   84 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCS--SCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCc--CccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc
Confidence            45678999999999997643322  12478988754333222210 0       1111  2222222    999999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |+|.|.|..
T Consensus        85 Dsg~YyCa~   93 (114)
T d2ak4d1          85 DSAVYFCAL   93 (114)
T ss_dssp             GCEEEEEEE
T ss_pred             cCCCceEeC
Confidence            999999964

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.15  E-value=0.00069  Score=53.38  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe--------eccCcceEe----ec--CceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK--------FRSDKFIRT----VD--GGLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~--------~~~~~~~~~----~~--~GLlI~~v~~~  344 (378)
                      .+.+++.+|+++.|.|.......   ..+.|+.+...++..-|-        .+..+++..    ..  --|.|.+++.+
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~---~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVP---PYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSC---CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCc---eeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            35688999999999998754322   368998875432221111        001122221    11  13999999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (115)
T d1j8hd1          84 DAAEYFCAVSE   94 (115)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCccceeeecC
Confidence            99999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.13  E-value=0.00077  Score=52.87  Aligned_cols=71  Identities=21%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEeecC-----ceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTVDG-----GLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~~~-----GLlI~~v~~~  344 (378)
                      +.+.+.+|+++.|.|...+..    ..+.|+.|...++..-|-.          ....++.....     -|.|.+++.+
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~----~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           7 RYLIKTRGQQVTLSCSPISGH----RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             SEEEEETTCCEEEEEECSTTC----CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             CeEEECCCCCEEEEEEECCCC----CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            457788999999999864332    3789998754433321210          11223322221     2999999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|-+.
T Consensus        83 Dsa~YyCA~~   92 (113)
T d2ntsp1          83 DSALYLCASS   92 (113)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeeeeeee
Confidence            9999999754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.00072  Score=52.68  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee----cCceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV----DGGLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~----~~GLlI~~v~~~DsG  347 (378)
                      .+.+.+.+|+++.|.|.......   ..+.|+.+...++...|-.       ...+++...    .--|.|.+++.+|+|
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~---~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVG---TYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCEEeECCCCCEEEEEEecCCcC---CceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            35678889999999998643322   3699998754433322210       012232221    223999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.12  E-value=0.00071  Score=53.22  Aligned_cols=74  Identities=18%  Similarity=0.346  Sum_probs=46.9

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      .+.+++.+|+++.|.|.......   ..+.|+.+...++...|-. .      ..+++...      .--|.|.+++.+|
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~---~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPF---SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCC---SEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCc---cCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            35678889999999998654322   3689988754322111111 0      11122221      1129999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|.+.+
T Consensus        84 sg~Y~Ca~~~   93 (114)
T d2cdea1          84 SASYICVVSD   93 (114)
T ss_dssp             CSEEEEEEEC
T ss_pred             Ccccceeeec
Confidence            9999998854

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.07  E-value=0.00086  Score=52.35  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=46.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|..... .  ...+.|+.+...+...-+-.       ...+|+.....|    |.|.+|+.+|+|.
T Consensus         9 ~slsv~~G~svtl~C~~s~~-~--~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTD-I--DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSC-C--TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CEEEECCCCCEEEEEEeCCC-C--CccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence            45678899999999975322 1  13689998754322211110       122344333222    9999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (106)
T d1i8ka_          86 YYCLQSF   92 (106)
T ss_dssp             EEEEECS
T ss_pred             EeEecCc
Confidence            9997654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.07  E-value=0.00076  Score=53.00  Aligned_cols=72  Identities=18%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----c---cCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----R---SDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----~---~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|.......   ..+.|+.|...++...|-.    .   -.+++.....+    |.|.+++.+|+|.
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~---~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~   85 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASENIY---SYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS   85 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CEEEECCCCCEEEEEEeCCCcC---cccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence            4577888999999998743322   3689998865444332211    0   11233332222    9999999999999


Q ss_pred             EEEEeC
Q psy10772        349 YDCWLG  354 (378)
Q Consensus       349 Y~C~~~  354 (378)
                      |.|-+.
T Consensus        86 YyCA~~   91 (109)
T d1mqkl_          86 YYCQHH   91 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            999765

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.03  E-value=0.0011  Score=51.99  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee----cCceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV----DGGLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~----~~GLlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|.......   ..+.|+.+...++...+-.       ...+++...    .--|.|.+++.+|+|.
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~---~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEIS---GYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFAD   85 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CEEEECCCCCEEEEEEeCCCCC---CCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeE
Confidence            3567888999999998753322   3689998765444321111       011122222    1239999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1c5cl1          86 YYCLQYA   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEecCc
Confidence            9997654

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.01  E-value=0.0013  Score=51.46  Aligned_cols=71  Identities=18%  Similarity=0.197  Sum_probs=45.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------e--ccCcceEeecC-----ceEEeeecC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------F--RSDKFIRTVDG-----GLVIMAVEE  343 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~--~~~~~~~~~~~-----GLlI~~v~~  343 (378)
                      +.+.+.+|+++.|.|...+. .   ..|.|+.|...++..-|-         .  ...+++.....     -|.|.+++.
T Consensus         7 ~~~~~~~G~svtl~C~~~~~-~---~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPISG-H---VSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             SEEEEETTCCEEEEEECCTT-C---CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             CeEEECCCCCEEEEEEECCC-C---CEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            45678899999999986432 2   378998875432221110         0  12233333222     288999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|+|.|.|-+.
T Consensus        83 ~Dsa~YyCa~~   93 (112)
T d1kgce1          83 EDSAVYLCASS   93 (112)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999863

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00057  Score=53.91  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=46.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-ee-c-----------cCcceEeecCc----eEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KF-R-----------SDKFIRTVDGG----LVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~-~-----------~~~~~~~~~~G----LlI~~v~  342 (378)
                      +.+++.+|+++.|.|.......  ...+.|+.+....+...+ .+ .           ...++.....+    |.|.+|+
T Consensus         8 ~~~t~~~G~~vtL~C~~~~~~~--~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~   85 (114)
T d1akjd_           8 LDRTWNLGETVELKCQVLLSNP--TSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFR   85 (114)
T ss_dssp             CSCCCCTTCCEEEEEEECCSSC--CSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCC
T ss_pred             CcEeccCCCcEEEEEEeCCCcC--CCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCC
Confidence            3456677999999998753322  235899988644332211 00 0           11233322222    9999999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|+|.|.|-+..
T Consensus        86 ~~Dsg~YyCa~~~   98 (114)
T d1akjd_          86 RENEGYYFCSALS   98 (114)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCCCEEEeEeEcC
Confidence            9999999998653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.98  E-value=0.00071  Score=52.48  Aligned_cols=72  Identities=18%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|......    ..+.|+.+....+...+-..       ...++.....    -|.|.+++.+|+|.
T Consensus         8 ~~l~~~~G~~vtl~C~~s~~~----~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASSSV----NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             SEEEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEeCCCC----CccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            467888999999999864322    25899988644333222210       1122222211    29999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|-+..
T Consensus        84 YyCa~~~   90 (104)
T d1yqvl1          84 YYCQQWG   90 (104)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9997654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.96  E-value=0.0016  Score=50.82  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=47.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|..... . . ..+.|+.+....+...+..       ...+++.....+    |.|.+++.+|+|.
T Consensus         9 ~~ltv~~G~svtl~C~~s~~-~-~-~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASED-I-Y-SRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSC-C-T-TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             CEEEECCCCCEEEEEecCCC-c-c-cccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            46788999999999976322 2 1 2689998864433221211       112244443333    9999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9997653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.95  E-value=0.0012  Score=52.12  Aligned_cols=74  Identities=24%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee---cC---ceEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV---DG---GLVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~---~~---GLlI~~v~  342 (378)
                      ...+++.+|+++.|.|......  ....+.|+.+....+..-|-.          ...+|+-..   ..   -|.|.+++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~--~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVY--SNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR   84 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCS--SSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             CCCEEEcCCCCEEEEEEEcCCc--cCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcc
Confidence            3457889999999999764332  224689987643333221210          122343322   11   28899999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|...
T Consensus        85 ~~Dsg~YyCa~~   96 (116)
T d1tvda_          85 TEDSATYYCAFT   96 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccccceeeEe
Confidence            999999999754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.92  E-value=0.0018  Score=50.43  Aligned_cols=72  Identities=25%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|......   ...+.|+.+...+...-+-.       .-++++.....    -|.|.+++.+|+|.
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEecCCC---CcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence            467888999999999864222   23689998764433321111       01223333222    29999999999999


Q ss_pred             EEEEeC
Q psy10772        349 YDCWLG  354 (378)
Q Consensus       349 Y~C~~~  354 (378)
                      |.|...
T Consensus        86 YyCa~~   91 (107)
T d1j1pl_          86 YFCQQA   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.91  E-value=0.0019  Score=50.47  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEeecC-----ceEEeeecC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRTVDG-----GLVIMAVEE  343 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~~~~-----GLlI~~v~~  343 (378)
                      +.+.+.+|+++.|.|...+..    ..+.|+.+...++...|-.           ..+.++.....     -|.|.+++.
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPISGH----DNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             SEEEEETTCCEEEEEECCTTC----SEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             CEEEECCCCCEEEEEEECCCC----ceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            467788999999999864332    2689998854433322210           01233443332     299999999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|+|.|.|-+
T Consensus        83 ~Dsa~YyCa~   92 (111)
T d2esve1          83 EDSGVYFCAS   92 (111)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCCceEEEee
Confidence            9999999964

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00081  Score=52.66  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             cceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec----------cCcceEee---cCc---eEEeee
Q psy10772        278 GRLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR----------SDKFIRTV---DGG---LVIMAV  341 (378)
Q Consensus       278 ~~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~----------~~~~~~~~---~~G---LlI~~v  341 (378)
                      .+..+.+.+|+++.|.|.-+.+. .....+.|+.+........|...          ..+|+...   ..|   |.|.+|
T Consensus         5 pe~~~~v~eG~svtl~C~~~~~~-~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l   83 (113)
T d1smoa_           5 TEEKYELKEGQTLDVKCDYTLEK-FASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNL   83 (113)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHH-HTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSC
T ss_pred             ccCcEEEccCCCEEEEEEeCCCC-CCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccC
Confidence            45667888999999999754221 11125789876543222222110          01233332   223   789999


Q ss_pred             cCCCCeEEEEEeCC
Q psy10772        342 EELDAGKYDCWLGN  355 (378)
Q Consensus       342 ~~~DsG~Y~C~~~~  355 (378)
                      +.+|+|.|.|....
T Consensus        84 ~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          84 QVEDSGLYQCVIYQ   97 (113)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             CcccCceEEEEEEC
Confidence            99999999998654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.90  E-value=0.0015  Score=50.90  Aligned_cols=72  Identities=14%  Similarity=0.240  Sum_probs=45.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee----cCceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV----DGGLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~----~~GLlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|......   ...+.|+.+...++..-|-.       ...+++...    .--|.|.+|+.+|+|.
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~---~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSI---ETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CeEEECCCCCEEEEEEeCCCC---CCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            457788999999999764322   23689998854433321210       011233222    1239999999999999


Q ss_pred             EEEEeC
Q psy10772        349 YDCWLG  354 (378)
Q Consensus       349 Y~C~~~  354 (378)
                      |.|-+.
T Consensus        85 YyCa~~   90 (106)
T d1op3k1          85 YHCQHY   90 (106)
T ss_dssp             EEEEEE
T ss_pred             EeeeeC
Confidence            999754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.85  E-value=0.0018  Score=51.14  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec------cCcce--Eeec----CceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR------SDKFI--RTVD----GGLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~------~~~~~--~~~~----~GLlI~~v~~~Ds  346 (378)
                      ..+++.+|+++.|.|...+..    ..+.|+.+...++..-|- ..      ..+++  ....    --|.|.+++.+|+
T Consensus         8 ~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSVF----SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSCC----SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CeEEECCCCCEEEEEEECCCC----ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            457888999999999875432    278999875433321111 00      11111  1111    1299999999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      |.|.|-+.
T Consensus        84 a~YyCa~~   91 (115)
T d1ogad1          84 GLYLCAGA   91 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eeEccccc
Confidence            99999754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.83  E-value=0.001  Score=51.93  Aligned_cols=74  Identities=15%  Similarity=0.280  Sum_probs=48.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+++.+|+++.|.|....  ... ..+.|+.+...++...|-.       ...+|+.....    -|.|.+++.+|+|
T Consensus         8 p~~l~~~~G~svtl~C~~s~--~~~-~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQ--NVG-TNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESS--CCT-TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCeEEECCCCCEEEEEEeCC--CCC-CceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            35678889999999998632  222 3689998865444332321       01224333221    2999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|-+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1mexl1          85 EYFCQQYN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeECC
Confidence            99997553

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.83  E-value=0.0032  Score=49.21  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +-+++.+|+++.|.|.......   ..+.|+.+....+...|-..       ...++.....    .|.|.+++.+|+|.
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~---~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           9 SYLVASPGETITINCRASKSIS---KSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred             CeEEecCCCCEEEEEEccCCcC---CceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceE
Confidence            4567888999999998753211   36899988644332222110       1112222222    49999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|-+..
T Consensus        86 YyCA~~~   92 (108)
T d1jhll_          86 YICQQHN   92 (108)
T ss_dssp             EEEEECS
T ss_pred             EEEeeCC
Confidence            9997553

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.83  E-value=0.0011  Score=51.97  Aligned_cols=72  Identities=19%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eec------cCcceEe--e----cCceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFR------SDKFIRT--V----DGGLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~------~~~~~~~--~----~~GLlI~~v~~~Ds  346 (378)
                      ..+++.+|+++.|.|.....+.   ..+.|+.+...++...+ ...      ..+++..  .    .--|.|.+++.+|+
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~---~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAI---YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCE---EEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEEecCcc---cCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCC
Confidence            4578899999999998654332   36889887544332211 100      1112211  1    11399999999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      |.|.|.+.
T Consensus        85 g~YyCa~~   92 (113)
T d2bnqd1          85 ATYLCAVR   92 (113)
T ss_dssp             EEEEEEEE
T ss_pred             cEEeEeEe
Confidence            99999874

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.0021  Score=49.84  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=46.4

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|..... .  ...+.|+.+...++...|-..       ...++.....    -|.|.+|+.+|+|.|
T Consensus         9 s~~~~~G~svtL~C~~s~~-~--~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASES-V--TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             EEEECTTSCEEEEEEESSC-C--TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEeCCC-C--CccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCc
Confidence            4678899999999987422 2  236899988544333222110       1223333222    399999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|.+.
T Consensus        86 yCa~~   90 (106)
T d1lk3l1          86 FCQQS   90 (106)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            99654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.0022  Score=49.98  Aligned_cols=73  Identities=14%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      +.+++.+|+++.|.|.......   ..+.|+.+...++..-|-.       ..++++.....    -|.|.+|+.+|+|.
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~---~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDII---KYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CEEEECCCCCEEEEEEecCCCC---CcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence            4577889999999998743222   3689998755444322210       01234433322    39999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|-+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9997653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.81  E-value=0.0025  Score=49.86  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-cc---------CcceEee-----cCceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RS---------DKFIRTV-----DGGLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~---------~~~~~~~-----~~GLlI~~v~~~  344 (378)
                      +.+.+.+|+++.|.|......    ..+.|+.|...++..-|-. ..         .++....     .--|.|.+++.+
T Consensus         7 ~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNLNH----DAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             SEEEEETTCCEEECCEECSCC----SEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             CeEEEcCCCCEEEEEEEecCC----CcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            457889999999999975332    3789998865444322211 11         1111111     112999999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|-+.
T Consensus        83 DSa~YyCa~~   92 (114)
T d1ogae1          83 PTAFYLCASS   92 (114)
T ss_dssp             CCEEEEEEEE
T ss_pred             CceeEEEeec
Confidence            9999999654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.81  E-value=0.0022  Score=49.84  Aligned_cols=74  Identities=18%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecCc----eEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDGG----LVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~G----LlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|.......   ..+.|+.+....+...+...       ..+++.....+    |.|.+++.+|+|.
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~---~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~   84 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIK---KYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIAT   84 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred             CEEEECCCCCEEEEEEcCCCCC---CCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEe
Confidence            4567889999999997643322   25899987543332111110       12233333333    9999999999999


Q ss_pred             EEEEeCCe
Q psy10772        349 YDCWLGNT  356 (378)
Q Consensus       349 Y~C~~~~~  356 (378)
                      |.|.+..+
T Consensus        85 YyCa~~~~   92 (106)
T d1a0ql1          85 YYCLQYYN   92 (106)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99987653

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.80  E-value=0.0022  Score=49.99  Aligned_cols=73  Identities=19%  Similarity=0.333  Sum_probs=46.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      ..+++.+|+++.|.|......+   ..+.|+.+....+...|...       ..+++.....    -|.|.+++.+|+|.
T Consensus         9 ~sl~~~~G~svtl~C~~s~~~~---~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQDIN---SYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCC---CccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence            4567888999999998643322   35789887544333222211       1123332222    39999999999999


Q ss_pred             EEEEeCC
Q psy10772        349 YDCWLGN  355 (378)
Q Consensus       349 Y~C~~~~  355 (378)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1d5il1          86 YYCLQYD   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeecc
Confidence            9997543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.0015  Score=51.49  Aligned_cols=74  Identities=19%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|..........-.|.|+.+...++..-|-..       ..+|+.....    -|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            46788999999999875332211113789987543332212100       1223332222    299999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|.+.
T Consensus        89 yCa~~   93 (110)
T d1oaql_          89 FCALW   93 (110)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            99854

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.77  E-value=0.002  Score=50.35  Aligned_cols=74  Identities=18%  Similarity=0.231  Sum_probs=45.0

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-------cCcceEe--ecC----ceEEeeecCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-------SDKFIRT--VDG----GLVIMAVEEL  344 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-------~~~~~~~--~~~----GLlI~~v~~~  344 (378)
                      ...+++.+|++|.|.|.......  ...+.|+.+...++...|- ..       ..+++..  ...    -|.|.+++.+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDS--SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   83 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCS--SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCC--CCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcc
Confidence            45678999999999997532222  2347898775332221111 00       1112221  111    2999999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|-..
T Consensus        84 Dsa~YyCa~~   93 (115)
T d1fo0a_          84 DSAVYFCAMR   93 (115)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccccccceee
Confidence            9999999753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.75  E-value=0.0016  Score=49.39  Aligned_cols=65  Identities=23%  Similarity=0.350  Sum_probs=40.6

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e-----ccCcceEee--cC----ceEEeeecCCCCeEEEEEeC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F-----RSDKFIRTV--DG----GLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~-----~~~~~~~~~--~~----GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      |+++.|.|.......   ..+.|+.+....+..-|- .     ..++|+...  ..    -|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~---~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGS---QSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTC---CEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccC---CcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            789999998643322   468998875443322111 1     122233221  11    29999999999999999754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.74  E-value=0.0029  Score=49.43  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec----------cCcceEee-c----CceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR----------SDKFIRTV-D----GGLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~----------~~~~~~~~-~----~GLlI~~v~~  343 (378)
                      .+.+.+.+|+++.|.|......    ..+.|+.+...++..-|-..          ...+.... .    --|.|.+++.
T Consensus         7 P~~~~~~~G~~v~l~C~~~~~~----~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDMDH----ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             CSEEEEETTCCEEECEEESSCC----SEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             CCEEEECCCCCEEEEEEEcCCc----cEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            3567788999999999864322    36899887543333211100          11222222 1    1288999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|+|.|.|-+.
T Consensus        83 ~Dsa~YyCa~~   93 (113)
T d1j8he1          83 NQTSMYLCASS   93 (113)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCcccEEeeEc
Confidence            99999999753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.74  E-value=0.0025  Score=49.87  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c----c-Cc--ceEeecC----ceEEeeecCCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R----S-DK--FIRTVDG----GLVIMAVEELDA  346 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~----~-~~--~~~~~~~----GLlI~~v~~~Ds  346 (378)
                      .+.+++.+|+++.|.|......    ..+.|+.|...++...|-. .    . +.  +......    -|.|.+++.+|+
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEecCC----ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            3567888999999999875322    3689988754333221110 0    0 10  1111111    289999999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      |.|.|-+.
T Consensus        84 a~YyCa~~   91 (113)
T d1h5ba_          84 GTYFCAAE   91 (113)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.72  E-value=0.0011  Score=51.21  Aligned_cols=71  Identities=18%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEe----ecCceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRT----VDGGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~----~~~GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|.......   ..+.|+.+....+..-+...       .+.++..    ..--|.|.+++.+|+|.|
T Consensus         7 sl~~~~G~svtl~C~~~~~~~---~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPN---QYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGG---SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCC---CCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            577889999999997643322   36899988543332111110       1112111    112388999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|-+.
T Consensus        84 yCA~~   88 (103)
T d8faba1          84 YCQAW   88 (103)
T ss_dssp             EEEEE
T ss_pred             Eeeec
Confidence            99643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.72  E-value=0.0031  Score=49.83  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------c--cCcceEeec-C----ceEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------R--SDKFIRTVD-G----GLVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~--~~~~~~~~~-~----GLlI~~v~  342 (378)
                      +.+++.+|+++.|.|.......   ..+.|+.|...++..-|-.          +  ...++.... .    -|.|.+++
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~---~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   85 (118)
T d2ij0c1           9 SMVIVKSGTSVKIECRSLDTNI---HTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH   85 (118)
T ss_dssp             SEEEECTTCCEEEEEEECSSCC---SEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC
T ss_pred             CeEEEcCCCCEEEEEEEcCCcc---cEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc
Confidence            4577889999999998643322   3689998854433322210          0  122443332 1    19999999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|-+.
T Consensus        86 ~~Dsa~YyCa~~   97 (118)
T d2ij0c1          86 PEDSGFYVCSAL   97 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccCceEEEEEe
Confidence            999999999764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.71  E-value=0.0026  Score=49.58  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=43.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|.......  ...+.|+.+...++..-|-..       ...++.....    -|.|.+++.+|+|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~--~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISG--NEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCT--TEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCC--CCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            578899999999997532221  124789877543332212100       0111222211    299999999999999


Q ss_pred             EEEe
Q psy10772        350 DCWL  353 (378)
Q Consensus       350 ~C~~  353 (378)
                      .|..
T Consensus        85 yCa~   88 (110)
T d2esvd1          85 YCIV   88 (110)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.70  E-value=0.0027  Score=49.60  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--------c--cCcceEeec-----CceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--------R--SDKFIRTVD-----GGLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--------~--~~~~~~~~~-----~GLlI~~v~~~  344 (378)
                      +.+++.+|+++.|.|......    ..+.|+.|...++..-|-.        +  ..++.....     --|.|.+++.+
T Consensus         7 ~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDMNH----EYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS   82 (112)
T ss_dssp             SEEEEETTCCEEEEEEESSCC----SEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred             CeEEECCCCCEEEEEEEECCc----cceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence            456788999999999875332    3789998865444321210        0  112222221     13999999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |+|.|.|-.
T Consensus        83 DsavYyCA~   91 (112)
T d2bnub1          83 QTSVYFCAS   91 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             HCEEEEEee
Confidence            999999965

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.70  E-value=0.00011  Score=56.70  Aligned_cols=68  Identities=19%  Similarity=0.429  Sum_probs=42.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e------ccCcceEee---c---CceEEeeecCCCCeE
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F------RSDKFIRTV---D---GGLVIMAVEELDAGK  348 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~------~~~~~~~~~---~---~GLlI~~v~~~DsG~  348 (378)
                      ++|.+|+++.|.|......    ..+.|+.|...++...|- .      ...+|+...   .   --|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~~~----~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTSI----NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSCE----EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeCCc----ccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEE
Confidence            4577899999999865332    368998764332221110 0      012232221   1   129999999999999


Q ss_pred             EEEEe
Q psy10772        349 YDCWL  353 (378)
Q Consensus       349 Y~C~~  353 (378)
                      |.|-+
T Consensus        79 YyCA~   83 (96)
T d1ymmd1          79 YFCAT   83 (96)
T ss_dssp             CEEEE
T ss_pred             EeEeE
Confidence            99954

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.68  E-value=0.0028  Score=49.37  Aligned_cols=72  Identities=21%  Similarity=0.348  Sum_probs=45.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------c-cCcceEee----cCceEEeeecC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------R-SDKFIRTV----DGGLVIMAVEE  343 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~-~~~~~~~~----~~GLlI~~v~~  343 (378)
                      .+.+.+.+|+++.|.|......    ..+.|+.|...++...|-.          . ++.+....    .--|.|.+++.
T Consensus         8 P~~~~~~~G~~vtl~C~~s~~~----~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTNNH----NNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             CCeEEEcCCCCEEEEEEECCCc----CcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            3466788999999999874332    3689998754433321110          0 11111111    12288999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|+|.|.|-..
T Consensus        84 ~Dsa~YyCa~~   94 (110)
T d2aq2a1          84 SQTSVYFCASG   94 (110)
T ss_dssp             GGCEEEEEEEE
T ss_pred             hhCEEEEEeeC
Confidence            99999999654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.67  E-value=0.0019  Score=50.01  Aligned_cols=71  Identities=20%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEe--ecC----ceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRT--VDG----GLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~--~~~----GLlI~~v~~~Ds  346 (378)
                      ..+++.+|+++.|.|..... .  ...+.|+.+...+....|-. .      ..+++..  ...    -|.|.+++.+|+
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~-~--~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENS-A--FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCT-T--EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             CEEEEcCCCCEEEEEEecCC-C--CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            45778899999999986432 2  12589987743322211110 0      1111111  111    299999999999


Q ss_pred             eEEEEEe
Q psy10772        347 GKYDCWL  353 (378)
Q Consensus       347 G~Y~C~~  353 (378)
                      |.|.|-+
T Consensus        84 a~YyCa~   90 (110)
T d1u3ha1          84 ATYFCAA   90 (110)
T ss_dssp             SEEEECC
T ss_pred             eeEeeee
Confidence            9999975

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.67  E-value=0.0023  Score=50.10  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee----cCceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV----DGGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~----~~GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|............+.|+.|...++..-|-..       ..+++-..    .--|.|.+|+.+|+|.|
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            57788999999999865322111225899987644333222110       11122111    12399999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|-+.
T Consensus        89 yCa~~   93 (112)
T d1lgva1          89 YCSSY   93 (112)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.66  E-value=0.0034  Score=48.97  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=45.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec------c-CcceEeec----CceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR------S-DKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~------~-~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+|+++.|.|.....+.  ...+.|+.+...++.+-|-..      . ..++....    .-|.|.+++.+|+|.|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~--~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISG--TDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCT--TCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCc--cccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            577889999999997532222  125899988644333222100      0 11222222    2399999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|-..
T Consensus        85 yCa~~   89 (112)
T d1kgcd1          85 YCILP   89 (112)
T ss_dssp             EEECC
T ss_pred             eeeEe
Confidence            99754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.66  E-value=0.0039  Score=48.48  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee------cCceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV------DGGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~------~~GLlI~~v~~~D  345 (378)
                      ...+.+.+|+++.|.|.......   ..+.|+.|...++..-|-..       ..+++...      .--|.|.+++.+|
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~---~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGY---PALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSC---CEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             CCeEEECCCCCEEEEEEecCCCC---cceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            45678899999999997533222   25899887543332212100       11223221      1228899999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|-+.
T Consensus        84 sa~YyCA~~   92 (110)
T d1ac6a_          84 SAVYYCALS   92 (110)
T ss_dssp             CEEEEEEEE
T ss_pred             Ccccceeec
Confidence            999999653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.65  E-value=0.0031  Score=49.09  Aligned_cols=73  Identities=18%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec------cCcceEe--ecC----ceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR------SDKFIRT--VDG----GLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~------~~~~~~~--~~~----GLlI~~v~~~D  345 (378)
                      .+.+++.+|+++.|.|..... .  ...+.|+.+...++..-|- ..      .++++..  ...    -|.|.+++.+|
T Consensus         7 p~s~~~~~G~svtl~C~~s~~-~--~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNS-M--FDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCT-T--CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEeCCC-C--CCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            345778899999999975322 2  2357898885443332111 00      1122222  111    29999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|-+.
T Consensus        84 sa~YyCa~~   92 (111)
T d1bd2d1          84 SAVYFCAAM   92 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999999764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.64  E-value=0.0029  Score=49.44  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=45.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|.... .++..-.+.|+.+...+...-|-..       ..+|+....    --|.|.+|+.+|+|.|
T Consensus         9 s~~v~~G~svtl~C~~s~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSS-SNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             EEEECTTSCEEEEEECCC-CCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             ceEeCCCCCEEEEEEECC-cCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            478889999999998643 2322235899977543332212110       112322221    1299999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|-+.
T Consensus        88 yCA~~   92 (111)
T d1rzfl1          88 YCGTW   92 (111)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.63  E-value=0.0032  Score=49.36  Aligned_cols=74  Identities=27%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             eEEEEeCCeeeeeeeeccC--CCCCCCCeEEEEecccCceeeEeec-------cCcceEeecCc----eEEeeecCCCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKLP--ASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDGG----LVIMAVEELDAG  347 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~--~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~G----LlI~~v~~~DsG  347 (378)
                      .+++.+|+++.|.|.....  ..-....+.|+.+....+..-|-..       ...++.....+    |.|.+|+.+|+|
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA   89 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG   89 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc
Confidence            4678889999999975421  1111235899877543332212111       12234333333    999999999999


Q ss_pred             EEEEEeC
Q psy10772        348 KYDCWLG  354 (378)
Q Consensus       348 ~Y~C~~~  354 (378)
                      .|.|...
T Consensus        90 vYyCa~~   96 (112)
T d1mjul1          90 VYYCLQH   96 (112)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEeC
Confidence            9999654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.63  E-value=0.0039  Score=48.73  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=46.0

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCceeeEeec-------cCcceEeecCc----eEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDGG----LVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~G----LlI~~v~~~DsG  347 (378)
                      ..+++.+|+++.|.|........ ....+.|+.+...++..-|-..       ...++.....+    |.|.+++.+|+|
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   88 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCc
Confidence            45677889999999975321111 1124899887543333222110       11233333223    999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|-+..
T Consensus        89 ~YyCa~~~   96 (111)
T d1j05a_          89 TYYCQQTN   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecC
Confidence            99997653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0012  Score=50.49  Aligned_cols=67  Identities=22%  Similarity=0.228  Sum_probs=39.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .+..|++|.|.|....+..    ...|+.++...-.  .........-....-+.|.+|+..|+|.|.|...+
T Consensus        17 ~V~~G~~VTL~C~~~~~~~----~f~l~k~g~~~~~--~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1          17 VIPLDGSVKIQCQAIREAY----LTQLMIIKNSTYR--EIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             EEETTCCEEEEECCCTTCS----EEEEEEEETTEEE--ECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeCCCeEEEEEcCCCCCc----EEEEEECCCcCce--eccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            4778999999998754322    4566665542111  10001111111223488999999999999998643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.61  E-value=0.0025  Score=49.50  Aligned_cols=75  Identities=19%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-c------cCcceEeecC----ceEEeeecCCCCe
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-R------SDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~------~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      .+.+++.+|+++.|.|.....  .....+.|+.+...++...|-. .      ..+++-....    -|.|.+++.+|+|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQS--VGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSC--CGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CCeEEECCCCCEEEEEEeecC--CCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            356788899999999975322  1123588998865433322311 0      1112222211    2999999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|-+..
T Consensus        86 ~YyCa~~~   93 (108)
T d2fx7l1          86 VYYCQQYG   93 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEeeecCC
Confidence            99998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.60  E-value=0.0047  Score=48.48  Aligned_cols=76  Identities=24%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             eeEEEEeCCeeeeeeeeccC--CCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLP--ASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~--~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~Ds  346 (378)
                      ..+++.+|+++.|.|.....  ......-+.|+.+...++...|-..       ..+++.....    -|.|.+|+.+|+
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDs   88 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDL   88 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcC
Confidence            45778899999999975321  1111124789987544333222211       1223333222    299999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|+..+
T Consensus        89 AvYYC~~~~   97 (112)
T d1ncwl1          89 GVYYCWQGT   97 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EeEEEEcCC
Confidence            999997764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0021  Score=50.59  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=45.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--c-------cCcceEe---ec--CceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--R-------SDKFIRT---VD--GGLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~-------~~~~~~~---~~--~GLlI~~v~~~D  345 (378)
                      +.+.+.+|+++.|.|............+.|+.+...++.+.+-.  .       .+++...   ..  --|.|.+++.+|
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVD   86 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcccc
Confidence            45677889999999997544331111378998754433221110  0       1111111   11  139999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|.+.
T Consensus        87 sa~YyCa~~   95 (117)
T d1dqta_          87 TGLYLCKVE   95 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             CEeEEEEEe
Confidence            999999764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.56  E-value=0.0029  Score=50.35  Aligned_cols=74  Identities=22%  Similarity=0.407  Sum_probs=46.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-e----------ccCcceEeec--Cc----eEEeeec
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-F----------RSDKFIRTVD--GG----LVIMAVE  342 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~----------~~~~~~~~~~--~G----LlI~~v~  342 (378)
                      ..++..+|+++.|.|..... +.....|.|+.+...++..-|- .          ...+++..+.  .+    |.|.+|+
T Consensus         9 ~sv~~~~G~svtL~C~~~~~-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIE-SFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCG-GGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CEEEecCCCcEEEEEEEecc-cccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            45677789999999986432 2112358899886444432221 1          1122333332  22    9999999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|+|.|.|-..
T Consensus        88 ~~Dsa~YyCA~~   99 (120)
T d1ypzf1          88 EEDEAIYYCSYG   99 (120)
T ss_dssp             GGGCSEEEEEEC
T ss_pred             cccceeEEEEEc
Confidence            999999999764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.53  E-value=0.0057  Score=47.81  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             eeEEEEeCCeeeeeeeeccC-CCCCCCCeEEEEecccCceeeE-ee------ccCcceEeecC----ceEEeeecCCCCe
Q psy10772        280 LKQTVTWGQSVHLSCFVKLP-ASMANQPMSWYHYSKDKGRYQI-KF------RSDKFIRTVDG----GLVIMAVEELDAG  347 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~-~~La~~~v~W~~~~~~~~~~~l-~~------~~~~~~~~~~~----GLlI~~v~~~DsG  347 (378)
                      ..+++.+|+++.|.|..... .......+.|+.|...++...| ..      ..++|+.....    -|.|.+++.+|+|
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA   88 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAA   88 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCc
Confidence            45788899999999976421 1111124889988544333222 11      01234433322    2899999999999


Q ss_pred             EEEEEeCC
Q psy10772        348 KYDCWLGN  355 (378)
Q Consensus       348 ~Y~C~~~~  355 (378)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (111)
T d2gsia1          89 TYYCSHIR   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            99997543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.52  E-value=0.0029  Score=49.59  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=45.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|......+   ..+.|+.+...++...|-..       ..+++.....    -|.|.+|+.+|+|.|
T Consensus         9 sl~~~~G~svtl~C~~~~~~~---~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGS---RSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGG---SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCC---cceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            467889999999998543322   36899988654444333210       1122222212    388999999999999


Q ss_pred             EEEe
Q psy10772        350 DCWL  353 (378)
Q Consensus       350 ~C~~  353 (378)
                      .|-+
T Consensus        86 yCA~   89 (109)
T d1w72l1          86 YCQV   89 (109)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9965

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.51  E-value=0.0019  Score=50.63  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee-c---C-ceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV-D---G-GLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~-~---~-GLlI~~v~~~  344 (378)
                      +.+.+.+|+++.|.|...+..    ..+.|+.+...++..-|-.          ...+++... .   . -|.|.+++.+
T Consensus         9 ~~~~~~~G~~v~l~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPISGH----SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE   84 (113)
T ss_dssp             SEEEEETTCCCEEEEECCTTC----CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG
T ss_pred             CEEEEeCCCCEEEEEEeCCCC----CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC
Confidence            457788999999999864332    3689998864433322210          012233322 1   1 2779999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |+|.|.|-+
T Consensus        85 Dsa~YyCa~   93 (113)
T d1nfdb1          85 DSAMYFCAS   93 (113)
T ss_dssp             GCEEECEEE
T ss_pred             CceeEEEEe
Confidence            999999964

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0017  Score=49.90  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCe-EEEEecccCceeeEeeccCc-ce-EeecCceEEeeecCCCCeEEEEEeC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPM-SWYHYSKDKGRYQIKFRSDK-FI-RTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v-~W~~~~~~~~~~~l~~~~~~-~~-~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      ..+.+.+|+++.++|.+..|..    +| .|..++.+     +.  ++. .+ .--..|.+|.+++..|+|.|.|.+.
T Consensus        13 ~~V~v~eg~~~vIPC~vT~P~~----~VtL~~~~~~~-----~~--p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~   79 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTSPNI----TVTLKKFPLDT-----LI--PDGKRIIWDSRKGFIISNATYKEIGLLTCEAT   79 (95)
T ss_dssp             EEEEECTTSCEEECCCBSCTTS----CCEEEETTTEE-----EC--CCSSSEEEETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEeCCCCEEEEccCCCCCc----eeEEEeccCCc-----cC--CCCCEEEECCCCCEEEeCCCcccCeEEEEEEE
Confidence            4688999999999999987755    44 45433322     32  222 22 2347899999999999999999985

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.48  E-value=0.003  Score=49.89  Aligned_cols=73  Identities=21%  Similarity=0.313  Sum_probs=46.6

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|..... .+....+.|+.+....+..-|...       ..+++....    --|.|.+|+.+|+|.|
T Consensus         9 s~~v~~G~svtL~C~~s~~-~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSAT-DIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             EEEECTTCCEEEEEECCTT-TTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cEEeCCCCCEEEEEEECCc-cccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            4788899999999986422 222336899987544332222110       112333221    2399999999999999


Q ss_pred             EEEeC
Q psy10772        350 DCWLG  354 (378)
Q Consensus       350 ~C~~~  354 (378)
                      .|-+.
T Consensus        88 yCA~~   92 (114)
T d2rhea_          88 YCAAW   92 (114)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99763

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.41  E-value=0.0019  Score=50.32  Aligned_cols=72  Identities=19%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEeec----CceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+++.+|+++.|.|......   ...+.|+.+...++..-|-.       ...+++....    --|.|.+++.+|+|.|
T Consensus        10 s~~~~~G~~vtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDI---NNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATY   86 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEE
T ss_pred             EEEECCCCCEEEEEEcCCCc---CCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcE
Confidence            35677899999999753222   23689988765433322211       0112222221    2399999999999999


Q ss_pred             EEEeCC
Q psy10772        350 DCWLGN  355 (378)
Q Consensus       350 ~C~~~~  355 (378)
                      .|-+..
T Consensus        87 yCa~~~   92 (107)
T d3cx5k1          87 FCQHHI   92 (107)
T ss_dssp             EEEECS
T ss_pred             EeeeCC
Confidence            997653

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.40  E-value=0.0088  Score=46.84  Aligned_cols=76  Identities=22%  Similarity=0.377  Sum_probs=47.6

Q ss_pred             eeEEEEeCCeeeeeeeeccCC--CCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPA--SMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDA  346 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~--~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~Ds  346 (378)
                      ..+++.+|+++.|.|......  +-....+.|+.+...++...|-..       -.+++-....    -|.|.+|+.+|+
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   89 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   89 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC
Confidence            457788999999999864211  111125899988644443322111       1223333222    399999999999


Q ss_pred             eEEEEEeCC
Q psy10772        347 GKYDCWLGN  355 (378)
Q Consensus       347 G~Y~C~~~~  355 (378)
                      |.|.|.+.+
T Consensus        90 avYyCa~~~   98 (113)
T d1n4xl_          90 GIYYCFQGS   98 (113)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEECC
Confidence            999997553

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.37  E-value=0.0046  Score=48.12  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceEee----c-CceEEeeecCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIRTV----D-GGLVIMAVEEL  344 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~~~----~-~GLlI~~v~~~  344 (378)
                      +.+.+.+|+++.|.|......    ..+.|+.|...++..-|-.          ....+....    . --|.|.+++.+
T Consensus         6 ~~~~~~~G~svtL~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTMGH----DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             SEEEEETTCCBCCEEEETTCC----SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             CEEEECCCCCEEEEEEEeCCc----ccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            457788999999999864322    3689998854333221110          011111111    1 12789999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |+|.|.|-+.
T Consensus        82 Dsa~YyCA~~   91 (112)
T d2cdeb1          82 HTSQYLCASS   91 (112)
T ss_dssp             TCSEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0025  Score=48.10  Aligned_cols=77  Identities=26%  Similarity=0.366  Sum_probs=48.4

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecC-CCCeEEEEEeCCe--eeE
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGNT--VLC  359 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~~--~l~  359 (378)
                      -+.|.+|.|.|.. ....    .|.|..|...     +.- .+++-+...+.-|++.+-+. .++|.|.|.+.+.  .=.
T Consensus         7 sISGTtV~LTCP~-~~~~----~i~W~~n~~~-----~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~   76 (91)
T d1xiwa_           7 SISGTTVILTCPQ-YPGS----EILWQHNDKN-----IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA   76 (91)
T ss_dssp             EEETTEEEEECSS-CTTS----CEEEEETTEE-----ESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGC
T ss_pred             EEeCCEEEEECCC-CCCC----ceeeeecccc-----ccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCc
Confidence            4679999999943 2323    6999988643     221 13334455667788877777 5899999998652  223


Q ss_pred             EEeeeeccccc
Q psy10772        360 THNLTVDAHSN  370 (378)
Q Consensus       360 ~~~~~v~~~~c  370 (378)
                      .|-|-+++--|
T Consensus        77 ~~~LYLKARVC   87 (91)
T d1xiwa_          77 NFYLYLRARVC   87 (91)
T ss_dssp             CEEEEEEECCC
T ss_pred             ceEEEEEeEee
Confidence            34444444444

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.24  E-value=0.0057  Score=47.90  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=45.3

Q ss_pred             eeEEEEeCCeeeeeeeeccC---CCCCCCCeEEEEecccCceeeEee-------ccCcceEeecC----ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLP---ASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTVDG----GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~---~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~~~----GLlI~~v~~~D  345 (378)
                      ..+.+.+|+++.|.|...+.   .......+.|+.+...++..-|-.       ..++++.....    -|.|.+++.+|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D   88 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED   88 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence            45778899999999965321   111112488987754332221110       01223222111    29999999999


Q ss_pred             CeEEEEEeCC
Q psy10772        346 AGKYDCWLGN  355 (378)
Q Consensus       346 sG~Y~C~~~~  355 (378)
                      +|.|.|-+..
T Consensus        89 sa~YyCA~~~   98 (113)
T d1q9ra1          89 LAVYYCKQSY   98 (113)
T ss_dssp             CEEEEEEECS
T ss_pred             CeEEEecccC
Confidence            9999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.19  E-value=0.0095  Score=47.43  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---------ec---cCcceEeec--Cc----eEEeeec
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---------FR---SDKFIRTVD--GG----LVIMAVE  342 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---------~~---~~~~~~~~~--~G----LlI~~v~  342 (378)
                      .++..+|.++.|+|...+. .+....+.|+.|...++.+-|-         ..   ..+|+..+.  ..    |.|.+++
T Consensus        10 s~t~~~g~t~~LsC~~sg~-~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGI-TISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             EEEEETTCCEEEEEEEESS-CTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             eEEeCCCCCEEEEEEEcCC-CcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            4677889999999987532 1222368999886544433221         00   123444431  22    8999999


Q ss_pred             CCCCeEEEEEe
Q psy10772        343 ELDAGKYDCWL  353 (378)
Q Consensus       343 ~~DsG~Y~C~~  353 (378)
                      .+|+|.|.|-.
T Consensus        89 ~~Dsa~YyCA~   99 (123)
T d1hxmb1          89 KQDIATYYCAL   99 (123)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccCcEEEEee
Confidence            99999999964

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0065  Score=45.71  Aligned_cols=80  Identities=18%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEE-EEecccCceeeEeeccCcceEeecCc------eEEeeecCCCCeEEEEEeC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSW-YHYSKDKGRYQIKFRSDKFIRTVDGG------LVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W-~~~~~~~~~~~l~~~~~~~~~~~~~G------LlI~~v~~~DsG~Y~C~~~  354 (378)
                      .++..|+...|+|.++-=-+  +|+|+| .+|++....  |...+.-+---.+.+      |-+-.+..+|.|.|.|.++
T Consensus        13 hs~~~G~~f~leCPVkYC~~--RPnVtWCKlngt~cv~--Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVH--RPNVTWCKHNGTIWVP--LEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSS--CCCEEEEEECSSSEEE--CCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             eeEecCCceEecCcchhhcC--CCCcEEEEeCCcEEEE--eecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            45667999999999874433  568999 566554211  221111100001111      4556788999999999997


Q ss_pred             C--eeeEEEeeee
Q psy10772        355 N--TVLCTHNLTV  365 (378)
Q Consensus       355 ~--~~l~~~~~~v  365 (378)
                      =  +.+-|+.+++
T Consensus        89 f~s~vieSHSvti  101 (104)
T d1xaua_          89 FNSQVINSHSVTI  101 (104)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             CChhheecceEEE
Confidence            3  6666666654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0045  Score=48.60  Aligned_cols=74  Identities=15%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeecc----------CcceEeec---Cc---eEEeeec
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRS----------DKFIRTVD---GG---LVIMAVE  342 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~----------~~~~~~~~---~G---LlI~~v~  342 (378)
                      +....+.+|+++.|.|.-.+. ....-.+.|..+...++...+-...          .+|+.+++   .+   |.|.+|+
T Consensus         2 e~~~~~~eG~svtl~C~ys~~-~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~   80 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIM-KYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   80 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHH-HHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCCcCCCCCCEEEEEEECCC-CccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc
Confidence            456778999999999986321 1111246898774332221121100          12444432   33   8899999


Q ss_pred             CCCCeEEEEEe
Q psy10772        343 ELDAGKYDCWL  353 (378)
Q Consensus       343 ~~DsG~Y~C~~  353 (378)
                      .+|+|.|.|-.
T Consensus        81 ~eDsa~YyCa~   91 (110)
T d1u9ka_          81 VTDSGLYRCVI   91 (110)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCCEEEEEEE
Confidence            99999999986

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.007  Score=48.04  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeecC----ceEEeeecCCCCeE
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVDG----GLVIMAVEELDAGK  348 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~~----GLlI~~v~~~DsG~  348 (378)
                      ..+.+.+|+++.|.|.....   ....+.|+.+...++...|-..       ...++.....    -|.|.+|+.+|+|.
T Consensus         9 ~sv~~~~G~svtl~C~~s~~---~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           9 SLLSASVGDRVTLSCKGSQN---INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             SEECCCTTCCEEEEEECSSC---CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             CEEEECCCCCEEEEEEeCCC---CcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            34567789999999986322   1236899988544333222110       1123332222    29999999999999


Q ss_pred             EEEEeCCeeeEEE----eeeecccccCCCCC
Q psy10772        349 YDCWLGNTVLCTH----NLTVDAHSNVADAP  375 (378)
Q Consensus       349 Y~C~~~~~~l~~~----~~~v~~~~c~~~~~  375 (378)
                      |.|......+ .|    .|+|...+=..|++
T Consensus        86 YyCa~~~~~~-~FG~GT~LtV~~~~~~~~s~  115 (119)
T d1f3rb2          86 YFCYQYNNGY-TFGAGTKLELKAAEQKLISE  115 (119)
T ss_dssp             EEEEEESSSE-EECCCCEECCSSSCCCCCCC
T ss_pred             EEeeccCCCC-eECCCeEEEEeCCCcCCCCc
Confidence            9997654322 11    46666665555554

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.92  E-value=0.007  Score=47.01  Aligned_cols=73  Identities=16%  Similarity=0.289  Sum_probs=44.5

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-------ccCcceEee-cC-----ceEEeeecCCCCe
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-------RSDKFIRTV-DG-----GLVIMAVEELDAG  347 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-------~~~~~~~~~-~~-----GLlI~~v~~~DsG  347 (378)
                      .+++.+|+++.|.|...+. .+...-+.|+.|...++..-+..       ...+++..+ +.     -|.|.+++.+|+|
T Consensus         9 s~sv~~G~svtL~C~~s~~-~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSG-NIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             EEEECTTSCEEEEEEESSS-CGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eeEECCCCCEEEEEEECCC-CccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            4788899999999986432 22222489988754322211110       011222221 11     2899999999999


Q ss_pred             EEEEEeC
Q psy10772        348 KYDCWLG  354 (378)
Q Consensus       348 ~Y~C~~~  354 (378)
                      .|.|-+.
T Consensus        88 ~YyCA~~   94 (111)
T d1cd0a_          88 DYYCQSY   94 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9999754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0045  Score=48.63  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=44.9

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee--cc-------CcceE-eecC----ceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF--RS-------DKFIR-TVDG----GLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~--~~-------~~~~~-~~~~----GLlI~~v~~~D  345 (378)
                      ..+.+.+|.++.|.|..........-.|.|+.+...++.+-+-.  ..       +++.. ....    -|.|.+++.+|
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            35677889999999987533321111388998865433321110  01       11111 1111    39999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|...
T Consensus        87 sa~YyCa~~   95 (118)
T d1i8lc_          87 TGLYICKVE   95 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeEe
Confidence            999999654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.79  E-value=0.0061  Score=47.44  Aligned_cols=70  Identities=19%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             eEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEeec----CceEEeeecCCCCeEE
Q psy10772        281 KQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTVD----GGLVIMAVEELDAGKY  349 (378)
Q Consensus       281 ~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~~----~GLlI~~v~~~DsG~Y  349 (378)
                      .+.+.+|+++.|.|.......   ..+.|+.|...++..-|-..       -.+|+....    --|.|.+++.+|+|.|
T Consensus         8 s~~~~~G~svtl~C~~~~~~~---~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPK---NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGG---SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             eeEECCCCCEEEEEECCCCCC---ccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            467788999999997632222   25899887644333212111       111333221    2399999999999999


Q ss_pred             EEEe
Q psy10772        350 DCWL  353 (378)
Q Consensus       350 ~C~~  353 (378)
                      .|-+
T Consensus        85 yCA~   88 (108)
T d1nfde1          85 YCLS   88 (108)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9964

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.79  E-value=0.01  Score=46.88  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=46.4

Q ss_pred             ceeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeec-------cCcceEee---c---CceEEeeecCCC
Q psy10772        279 RLKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFR-------SDKFIRTV---D---GGLVIMAVEELD  345 (378)
Q Consensus       279 ~k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~-------~~~~~~~~---~---~GLlI~~v~~~D  345 (378)
                      .+.+.+.+|+++.|+|..... ++....+.|+.+...++..-|-..       ..+|+...   .   --|.|.+++.+|
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~-~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGE-AIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSS-CGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCCEEECCCCCEEEEEEEecc-CccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            456788999999999987532 222235899877533222111100       11232221   1   139999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|-..
T Consensus        87 sa~YyCA~~   95 (120)
T d1hxma1          87 EGSYYCACD   95 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             CceeecCcc
Confidence            999999654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0084  Score=45.42  Aligned_cols=64  Identities=16%  Similarity=0.144  Sum_probs=36.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+..|.+|.|.|..+....    ...|+..+..   ..+..+.... ....--+.|.+|+..|+|.|.|...
T Consensus        14 ~V~~G~~VTL~C~~~~~~~----~f~L~k~g~~---~~~~~~~~~~-~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (95)
T d1olla1          14 MVPKEKQVTICCQGNYGAV----EYQLHFEGSL---FAVDRPKPPE-RINKVKFYIPDMNSRMAGQYSCIYR   77 (95)
T ss_dssp             EEETTCCEEEEEECCTTCC----EEEEEETTEE---EEEECCSSCT-TCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cccCCCcEEEEEecCCCcc----EEEEEECCCC---cceeEEccCC-CccEEEEEEeeeecCCCceEEEEeC
Confidence            4668999999998743311    2333332221   1111111100 0111248899999999999999854

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.047  Score=42.34  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee----------ccCcceE--e-ecC---ceEEeeecCCC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF----------RSDKFIR--T-VDG---GLVIMAVEELD  345 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~----------~~~~~~~--~-~~~---GLlI~~v~~~D  345 (378)
                      +++.+|+++.|.|.-... .....-..|+++...++...+-.          ....++.  . ..+   -|.|.+++.+|
T Consensus        10 ~~v~~g~svtL~C~~s~~-~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   88 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYN-LFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQ   88 (118)
T ss_dssp             EEECBTTBEEEEEEESCC-SSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGG
T ss_pred             cEEeCCCCEEEEEEEecC-CCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCccc
Confidence            457789999999986422 21222345776654433221211          0111221  1 122   29999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +|.|.|-..
T Consensus        89 savYyCa~~   97 (118)
T d1yjdc1          89 TDIYFCKIE   97 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            999999754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.90  E-value=0.026  Score=42.86  Aligned_cols=72  Identities=25%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC-CCCeEEEEEeCCeeeEEE
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGNTVLCTH  361 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~~~l~~~  361 (378)
                      .-+.|.+|.|.|...+ ..    .|.|..|...     |.   +.    .+.-|++.+.+. .|+|.|.|...+.-= .|
T Consensus        10 VSISGTtV~LTCP~~~-~~----~I~Wkkn~~~-----i~---g~----~~~~L~L~~FSE~e~SGyY~C~~~~~~~-~~   71 (100)
T d1jbja2          10 VSISGTSVELTCPLDS-DE----NLKWEKNGQE-----LP---QK----HDKHLVLQDFSEVEDSGYYVCYTPASNK-NT   71 (100)
T ss_dssp             EEEETTEEEEECSSCC-CT----TCEEEETTEE-----EC---SC----CCSEEEEESCCTTTSCEEEEEECSSCCC-CC
T ss_pred             EEEeCCEEEEECCCCC-CC----ceEEeecccc-----CC---CC----CCcEEEEccccccccCcceEEecCCCCc-ce
Confidence            4567999999997642 22    6899877642     32   11    122355556555 699999997665211 23


Q ss_pred             eeeecccccCC
Q psy10772        362 NLTVDAHSNVA  372 (378)
Q Consensus       362 ~~~v~~~~c~~  372 (378)
                      -|=+.+--|.+
T Consensus        72 ~LYLKARV~~~   82 (100)
T d1jbja2          72 YLYLKARVGSA   82 (100)
T ss_dssp             CEEECCCCCSC
T ss_pred             EEEEEEEEccc
Confidence            44445554543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.72  E-value=0.031  Score=44.41  Aligned_cols=69  Identities=17%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             EEeCCeeeeeeeeccCCCCCC--CCeEEEEecccCceeeEee-c----------cCcceEeecC------ceEEeeecCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMAN--QPMSWYHYSKDKGRYQIKF-R----------SDKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~--~~v~W~~~~~~~~~~~l~~-~----------~~~~~~~~~~------GLlI~~v~~~  344 (378)
                      +.+|+++.|.|...+- ++..  ..+.|+.|...++.+-|.. .          ...|+.++.+      -|.|.+++.+
T Consensus        12 v~PG~sv~LsC~~SG~-s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGF-SLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             CCSSSEEEEEEEEESC-CTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             ECCCCCEEEEEEEccc-CccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            4569999999975321 1111  2478988855444321211 0          1235554422      2899999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        91 DsAvYyCAr   99 (120)
T d2agjh1          91 DTATYYCAR   99 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEeeEe
Confidence            999999963

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.26  E-value=0.11  Score=39.87  Aligned_cols=71  Identities=21%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             eeEEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-----------ccCcceEe---ecCceEEeeecCCC
Q psy10772        280 LKQTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-----------RSDKFIRT---VDGGLVIMAVEELD  345 (378)
Q Consensus       280 k~~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-----------~~~~~~~~---~~~GLlI~~v~~~D  345 (378)
                      +.+.+.+|+++.|.|..... .  ...+.|+.|...++..-|-.           ...+++..   ...-|.|..++.+|
T Consensus         9 ~~~~~~~G~~vtL~C~~~~~-~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~d   85 (112)
T d1fo0b_           9 RWRLVPRGQAVNLRCILKNS-Q--YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ   85 (112)
T ss_dssp             SEEECCTTCCEEEEEEESCT-T--CCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCS
T ss_pred             CeEEECCCCCEEEEEEEecC-C--CCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccC
Confidence            45677889999999986432 2  13689998854333321210           01223322   23448899999999


Q ss_pred             CeEEEEEe
Q psy10772        346 AGKYDCWL  353 (378)
Q Consensus       346 sG~Y~C~~  353 (378)
                      ++.|.|-.
T Consensus        86 sa~Y~Ca~   93 (112)
T d1fo0b_          86 GRTLYCTC   93 (112)
T ss_dssp             CEEEEEEE
T ss_pred             CccEEEEE
Confidence            99999974

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.066  Score=40.18  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=35.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+..|.+|.|.|.......    ...|+..+....   +.. ....   ..--..|.+|+.+|+|.|.|..
T Consensus        14 ~V~~G~~VTL~C~~~~~~~----~f~L~Keg~~~~---~~~-~~~~---~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          14 EVISGEKVTFYCRLDTATS----MFLLLKEGRSSH---VQR-GYGK---VQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEETTCEEEEEEECSSSCS----EEEEEEESSSCE---EEE-EECS---SEEEEEEEECCGGGCEEEEEEC
T ss_pred             cccCCCcEEEEECCCCCCC----EEEEEECCCccc---eee-cCCC---ceeEEEecccChhcCceEEEEe
Confidence            5778999999998743211    233433333211   110 1111   1224889999999999999964

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.06  E-value=0.058  Score=42.74  Aligned_cols=71  Identities=27%  Similarity=0.381  Sum_probs=45.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeecC------ceEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVDG------GLVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~~------GLlI~~v~~~D  345 (378)
                      .+.+|+++.|.|...+- .+..-.+.|+.|...++.+-|- +.          ...|+.++.+      -|.|.+++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~-~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGN-TLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEESC-TTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCC-CccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            56789999999987532 2322357898886544443221 10          1235555432      28999999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      +..|.|-..
T Consensus        89 tA~YYCAr~   97 (119)
T d1kxvc_          89 TAMYYCKPS   97 (119)
T ss_dssp             CEEEEEEEE
T ss_pred             cceEeeeec
Confidence            999999643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.99  E-value=0.069  Score=42.35  Aligned_cols=70  Identities=20%  Similarity=0.235  Sum_probs=44.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeecC-c-----eEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVDG-G-----LVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~~-G-----LlI~~v~~~D  345 (378)
                      .+.+|+++.|.|...+. .+..--+.|..|...++.+=|- +.          ...|+.++.+ .     |-|.+++.+|
T Consensus        11 ~vkPG~sl~LsC~~SG~-~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGG-SFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEESS-CCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccc-cCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            46779999999988643 2333357898886544432110 11          1234544321 1     8899999999


Q ss_pred             CeEEEEEe
Q psy10772        346 AGKYDCWL  353 (378)
Q Consensus       346 sG~Y~C~~  353 (378)
                      ++.|.|-.
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999953

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.072  Score=39.01  Aligned_cols=69  Identities=17%  Similarity=0.319  Sum_probs=44.1

Q ss_pred             EeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcc-eEeecCceEEeeecCCCCeEEEEEeCCeeeEEEee
Q psy10772        285 TWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKF-IRTVDGGLVIMAVEELDAGKYDCWLGNTVLCTHNL  363 (378)
Q Consensus       285 ~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~-~~~~~~GLlI~~v~~~DsG~Y~C~~~~~~l~~~~~  363 (378)
                      ..|..+.|.|-...++..- .--+|+.+++.     |+  .+.. -..++  .-|-  ...|+|.|.|.....+.+.=.|
T Consensus        10 ~~~sk~~LtCnLt~s~~~i-~ghrW~K~gkv-----l~--ed~~~~~~te--y~V~--~~D~SGeY~CVFl~~P~~~a~I   77 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEV-TGHRWLKGGVV-----LK--EDALPGQKTE--FKVD--SDDQWGEYSCVFLPEPMGTANI   77 (80)
T ss_dssp             EETTEEEEEEEEESCSSCC-CEEEEESSSEE-----EE--CTTCCCSEEE--EEEC--GGGCCEEEEEEEESTTSCEEEE
T ss_pred             cCCCCEEEEEECCCCCCce-eeeEEeeCCEE-----cc--ccCCCCCceE--EEEe--cCCCCceEEEEEcCCCcceeEE
Confidence            3488999999997654421 23489988764     54  2110 01111  1121  2567999999998888888887


Q ss_pred             ee
Q psy10772        364 TV  365 (378)
Q Consensus       364 ~v  365 (378)
                      +|
T Consensus        78 eV   79 (80)
T d3b5ha2          78 QL   79 (80)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.031  Score=42.79  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=39.9

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCe-EEEEEeCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAG-KYDCWLGN  355 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG-~Y~C~~~~  355 (378)
                      +.+|+.+.|.|.....-..+.+.|+|+..+..-.........+..-..+-...|.+.++..|-| .|.|.+.+
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~   85 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKL   85 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEc
Confidence            5689999999998643222223588986554311100000011111112234566678888877 79999874

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.46  E-value=0.077  Score=40.06  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=35.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+..|.+|.|.|.......    ...++..+......+...+....  ...--..|.+|+.+|+|.|.|.-
T Consensus        12 ~V~~G~~VTl~C~~~~~~~----~f~L~keg~~~~~~~~~~~~~~~--~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1          12 LVKSEETVILQCWSDVMFE----HFLLHREGMFNDTLRLIGEHHDG--VSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             EEETTCCEEEEEEESSCCS----EEEEEEESSSCEEEEEECEEETT--EEEEEEEESSCCGGGCEEEEEEE
T ss_pred             ccCCCCcEEEEECCCCCCC----EEEEEECCCcCCceeeeeeecCC--ceEEEEEEcccCcccCeEEEEEE
Confidence            5678999999999742211    22333333221110010000000  01113889999999999999964

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.25  E-value=0.086  Score=39.90  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc--eEEeeecCCCCeEEEEEe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG--LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G--LlI~~v~~~DsG~Y~C~~  353 (378)
                      .+..|.+|.|.|....+..    ...|+..+.....  ..  ....  ..+..  ..|..+...|+|.|.|.-
T Consensus        16 ~V~~G~~VTL~C~~~~~~~----~f~L~k~g~~~~~--~~--~~~~--~~~~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2          16 TVLAGENVTLSCSSRSSYD----MYHLSREGEAHER--RL--PAGP--KVNGTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             EECTTCEEEEEEEESSCCS----EEEEEETTCSSCE--EE--ECEE--EETTEEEEEEEEEECCSCEEEEEEE
T ss_pred             cccCCCeEEEEECCCCCcc----EEEEEECCCcccc--EE--Eccc--cCCccEEEEEeccccccCEEEEEEe
Confidence            5677999999998743311    2233322221110  11  0110  11111  467788899999999954

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.22  E-value=0.092  Score=41.44  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecCc------eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDGG------LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~G------LlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+           ..|+.++.+-      |-|.+|+.
T Consensus        10 ~~~kPG~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGY-TFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCC-CCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            356789999999987532 1222257898876555443221 111           2244444321      77889999


Q ss_pred             CCCeEEEEE
Q psy10772        344 LDAGKYDCW  352 (378)
Q Consensus       344 ~DsG~Y~C~  352 (378)
                      +|++.|.|-
T Consensus        89 eDtAvYYCA   97 (118)
T d1nlbh1          89 EDTATYFCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999994

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.19  E-value=0.1  Score=41.10  Aligned_cols=71  Identities=20%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---ee--------ccCcceEeecC------ceEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KF--------RSDKFIRTVDG------GLVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~--------~~~~~~~~~~~------GLlI~~v~~~D  345 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ..        .-..|+.++.+      =|.|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGT-SFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESS-CSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEeee-cCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            56779999999987532 222235788887544433211   10        11234444321      18899999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      ++.|.|-..
T Consensus        90 tAvYyCAr~   98 (116)
T d7fabh1          90 TAVYYCARN   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeee
Confidence            999999643

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.10  E-value=0.096  Score=42.14  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=44.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCC--CCeEEEEecccCceeeEee---c--------cCcceEeec-Cc-----eEEeeecC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMAN--QPMSWYHYSKDKGRYQIKF---R--------SDKFIRTVD-GG-----LVIMAVEE  343 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~--~~v~W~~~~~~~~~~~l~~---~--------~~~~~~~~~-~G-----LlI~~v~~  343 (378)
                      ++.+|+++.|.|...+-. +..  .-+.|+.|...++.+-|-.   .        ...|+.++. ..     |.|.+++.
T Consensus        11 ~vkpg~Sl~LsC~~SG~~-~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFS-LSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             EECTTCCEEEEEEEESSC-TTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEeCCC-cCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            466799999999865321 111  1368988865444432211   0        123444332 11     89999999


Q ss_pred             CCCeEEEEEeCC
Q psy10772        344 LDAGKYDCWLGN  355 (378)
Q Consensus       344 ~DsG~Y~C~~~~  355 (378)
                      +|++.|.|-...
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997664

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.97  E-value=0.16  Score=39.96  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=43.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeec----Cc--eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVD----GG--LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~----~G--LlI~~v~~~  344 (378)
                      .+.+|+++.|.|...+- .+..-.+.|+.|...++.+=|- +..           ..|+.++.    +-  |-|.+|+.+
T Consensus        11 ~~kpG~Sv~LsC~~SG~-s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGY-TFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEETC-CSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEecc-CCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            56679999999986532 1222257898885444432121 111           12433321    11  889999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.91  E-value=0.13  Score=39.89  Aligned_cols=72  Identities=24%  Similarity=0.297  Sum_probs=45.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-------------CcceEeecC------ceEEeee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-------------DKFIRTVDG------GLVIMAV  341 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-------------~~~~~~~~~------GLlI~~v  341 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+             ..|+.++.+      =|-|.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~-t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGF-TFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CeECCCCCeEEEEEECCC-cccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            356789999999987532 1222258998886655543111 111             124444321      1778899


Q ss_pred             cCCCCeEEEEEeC
Q psy10772        342 EELDAGKYDCWLG  354 (378)
Q Consensus       342 ~~~DsG~Y~C~~~  354 (378)
                      +.+|++.|.|--.
T Consensus        89 ~~eDTAvYYCAr~  101 (109)
T d2ck0h1          89 KTEDTGIYYCVRG  101 (109)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHhHCEEEEEEEc
Confidence            9999999999643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=92.71  E-value=0.073  Score=41.33  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=42.4

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc----------CcceEeecC------ceEEeeecCCCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVDG------GLVIMAVEELDA  346 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~~------GLlI~~v~~~Ds  346 (378)
                      +.+|+++.|.|...+- .+..-.+.|..|...++.+-|- +..          ..|+.++.+      =|-|.+++.+|+
T Consensus         5 vkPG~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASGN-TFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECCC-CccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4679999999987432 2222357898886544432121 111          124444322      188889999999


Q ss_pred             eEEEEEeC
Q psy10772        347 GKYDCWLG  354 (378)
Q Consensus       347 G~Y~C~~~  354 (378)
                      +.|.|-..
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.71  E-value=0.15  Score=39.95  Aligned_cols=71  Identities=20%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-c----------CcceEeec---C---ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-S----------DKFIRTVD---G---GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-~----------~~~~~~~~---~---GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..-.+.|+.|...++.+-|- +. .          ..|+.++.   .   =|-|.+|+.+
T Consensus        11 ~~kPG~sl~LsC~~SG~-s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGY-SFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccc-cCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            56789999999987532 2222357898885544433121 11 1          12433321   1   1889999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.69  E-value=0.13  Score=41.03  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eec---------cCcceEeecCc------eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFR---------SDKFIRTVDGG------LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~---------~~~~~~~~~~G------LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..-.+.|..|...++.+=|   ...         ..+|+.++.+-      |-|.+++.+
T Consensus        11 l~kPg~sl~LsC~~SG~-~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          11 LAKPGASMKMSCRASGY-SFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEccC-CCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            56789999999987532 111125788887655443312   100         11344443221      778899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|--
T Consensus        90 DtAvYYCAR   98 (125)
T d1rihh1          90 DSAVYYCAR   98 (125)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.56  E-value=0.14  Score=40.48  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeec-Cc-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVD-GG-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~-~G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+.+ +..--+.|+.|...++.+-| .+.+           ..|+.++. ..     |-|.+|+.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s-~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYS-FTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEcccc-CCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            467899999999875331 22224789888654443322 1111           12443331 11     888899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.37  E-value=0.15  Score=39.10  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eec---------cCcceEeecC------ceEEeeecCCCCe
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFR---------SDKFIRTVDG------GLVIMAVEELDAG  347 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~---------~~~~~~~~~~------GLlI~~v~~~DsG  347 (378)
                      +|+++.|.|.+.+- .+..--+.|..|...++.+=|   ...         ...|+.++.+      =|-|.+|+.+|++
T Consensus         1 PG~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGY-TFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSS-CSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEECC-ChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            58999999998542 222225789888654443312   111         1235544433      2888999999999


Q ss_pred             EEEEEe
Q psy10772        348 KYDCWL  353 (378)
Q Consensus       348 ~Y~C~~  353 (378)
                      .|.|-.
T Consensus        80 vYYCAr   85 (103)
T d1oari_          80 VYYCAR   85 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEeEE
Confidence            999964

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.14  Score=38.54  Aligned_cols=18  Identities=17%  Similarity=0.287  Sum_probs=16.3

Q ss_pred             eEEeeecCCCCeEEEEEe
Q psy10772        336 LVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       336 LlI~~v~~~DsG~Y~C~~  353 (378)
                      -.|.+|+..|+|.|.|.-
T Consensus        62 F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2          62 FSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             EEECCCCTTSCEEEEEEE
T ss_pred             EEeeecccCCCeEEEEee
Confidence            788999999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.14  E-value=0.14  Score=40.55  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=43.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeec-C-----ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVD-G-----GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~-~-----GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..--+.|+.|...++.+-|- +..           ..|+.++. .     =|.|.+|+.+
T Consensus        11 ~~kpG~sv~LsC~~SG~-~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          11 LVEPGASVKLSCTASGF-NIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEecC-CCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            56789999999986432 1212247888875444432121 111           12444332 1     1889999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DtAvYYCAr   98 (121)
T d1j05b_          90 DTAVYYCAP   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeEe
Confidence            999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=92.05  E-value=0.35  Score=38.75  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=| .+.+           ..|+.++.+      =|-|.+++.+
T Consensus        11 lvkPG~Sl~LsC~~SG~-s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGF-TFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEESS-CTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEcCC-CCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            56789999999998532 233335889888654443312 1111           134444322      1788899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|--.
T Consensus        90 DTAvYYCAr~   99 (135)
T d1ieha_          90 DTAVYYCAKY   99 (135)
T ss_dssp             SCEEEEEEEB
T ss_pred             cceeeEEEEe
Confidence            9999999654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.99  E-value=0.1  Score=41.70  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---ee--------------ccCcceEeecC------ceEEe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KF--------------RSDKFIRTVDG------GLVIM  339 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~--------------~~~~~~~~~~~------GLlI~  339 (378)
                      ++.+|+++.|.|...+- .+..-.+.|..|...++.+=|   ..              ....|+.++.+      =|-|.
T Consensus        11 lvkpg~sl~LsC~~SG~-~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGD-SIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESS-CGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEcCC-CCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            45679999999998532 122225789887654443322   10              00124444321      18889


Q ss_pred             eecCCCCeEEEEEe
Q psy10772        340 AVEELDAGKYDCWL  353 (378)
Q Consensus       340 ~v~~~DsG~Y~C~~  353 (378)
                      +++.+|++.|.|-.
T Consensus        90 ~l~~eDtAvYYCAr  103 (127)
T d1i3ua_          90 SLKPEDTAVYYCAA  103 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccccceeEEEEEE
Confidence            99999999999964

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.94  E-value=0.31  Score=38.45  Aligned_cols=72  Identities=22%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~~------GLlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=| .+..           ..|+.++.+      =|-|.+|+.
T Consensus        10 ~lvkPg~sl~LsC~~SG~-s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGY-AYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EEEETTCCEEEEEEEESC-SSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCC-CcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            357789999999987532 222235789887654443312 1111           124444432      177888999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|-..
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999764

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.93  E-value=0.25  Score=38.76  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceee---Eeec---------cCcceEeec-Cc-----eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQ---IKFR---------SDKFIRTVD-GG-----LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~---l~~~---------~~~~~~~~~-~G-----LlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- ++..--+.|..|...++.+=   |...         -..|+.++. ..     |-|.+|+.
T Consensus         9 ~~~kPG~sl~LsC~~SG~-~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEY-TLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             EEECTTCCEEEEEEESSC-CCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccc-cCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            467789999999997532 23333578988865554321   1100         113444432 12     88899999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|-.
T Consensus        88 eDtAvYYCAr   97 (117)
T d1um5h1          88 EDSAVYYCAR   97 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.85  E-value=0.18  Score=39.40  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeec-C-c----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVD-G-G----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~-~-G----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..-.+.|..|...++.+=|- +.+           ..|+.++. . .    |-|.+++.+
T Consensus        11 ~vkpG~sl~LsC~~SG~-~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          11 SVKPGGSLKLSCAASGF-TLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECcc-CccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            56789999999987532 2222357898886555543221 111           12444432 1 1    889999999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.71  E-value=0.19  Score=39.66  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=45.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+.++.+      =|-|.+++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          11 VKKPGATVKISCKASGY-TFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            45779999999998642 222225789888654444312   1111         124443321      1778899999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |++.|.|-...
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1rz7h1          90 DTAVYYCAADP  100 (119)
T ss_dssp             GCEEEEEEECT
T ss_pred             cceEEEEeecC
Confidence            99999997653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.57  E-value=0.2  Score=39.52  Aligned_cols=70  Identities=23%  Similarity=0.298  Sum_probs=44.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc-----------CcceEeec-Cc-----eEEeeec
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS-----------DKFIRTVD-GG-----LVIMAVE  342 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~-----------~~~~~~~~-~G-----LlI~~v~  342 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....           ..|+.++. ..     |-|.+++
T Consensus        11 ~vkpG~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGF-TFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             EECTTCCEEEEEEEESS-CTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCc-cCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            46779999999998532 222236789988765554312   1111           12444432 11     7788999


Q ss_pred             CCCCeEEEEEe
Q psy10772        343 ELDAGKYDCWL  353 (378)
Q Consensus       343 ~~DsG~Y~C~~  353 (378)
                      .+|++.|.|-.
T Consensus        90 ~eDtAvYYCA~  100 (120)
T d1dlfh_          90 AEDTGIYYCTG  100 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEeeE
Confidence            99999999965

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=91.46  E-value=0.18  Score=40.04  Aligned_cols=70  Identities=21%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCC--CeEEEEecccCceeeE---eecc--------CcceEeecC-c-----eEEeeecC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQ--PMSWYHYSKDKGRYQI---KFRS--------DKFIRTVDG-G-----LVIMAVEE  343 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~--~v~W~~~~~~~~~~~l---~~~~--------~~~~~~~~~-G-----LlI~~v~~  343 (378)
                      ++.+|+++.|.|...+. .+...  -+.|+.|...++.+-|   ....        ..|+.++.+ .     |-|.+|+.
T Consensus        11 ~vkpg~sv~LsC~~SG~-s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGF-SLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             EECTTCCEEEEEEEESS-CTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCC-ccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            45679999999986432 12111  3579877544443212   1111        124433321 1     88999999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|+..|.|-.
T Consensus        90 eDsAvYyCAr   99 (123)
T d1r0ah1          90 ADTAIYYCAQ   99 (123)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEeecc
Confidence            9999999963

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.45  E-value=0.22  Score=39.04  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=45.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---ee---------ccCcceEeecC-c-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KF---------RSDKFIRTVDG-G-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~---------~~~~~~~~~~~-G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..-.+.|..|...++.+=|   ..         ....|+-++.+ .     |-|.+++.+
T Consensus        11 ~~kPg~sv~LsC~~SG~-s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGY-TLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            46779999999987532 122225789887654443211   10         11234443322 1     889999999


Q ss_pred             CCeEEEEEeCC
Q psy10772        345 DAGKYDCWLGN  355 (378)
Q Consensus       345 DsG~Y~C~~~~  355 (378)
                      |++.|.|-...
T Consensus        90 DtAvYYCA~~~  100 (117)
T d1iqdb1          90 DTAVYYCAVPD  100 (117)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeEcC
Confidence            99999997653

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=91.43  E-value=0.21  Score=39.19  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=44.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec----------cCcceEeec-Cc-----eEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR----------SDKFIRTVD-GG-----LVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~----------~~~~~~~~~-~G-----LlI~~v~~~D  345 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.          ...|+.++. ..     |-|.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGF-SLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESS-CTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccc-ccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            46789999999988532 2222357788876544432121 00          112433332 11     8899999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      ++.|.|--.
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.99  E-value=0.22  Score=39.44  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=45.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecCc------eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDGG------LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~G------LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..-.+.|..|...++.+=|- +..           ..|+.++.+-      |-|.+++.+
T Consensus        10 lvkpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGS-TDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             ECCTTCCEEEEEEEESC-STTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCc-ccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            45679999999998633 2222357898887655543221 111           1244443221      778889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.92  E-value=0.23  Score=39.25  Aligned_cols=72  Identities=19%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc-----------CcceEeecC-c-----eEEeeec
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS-----------DKFIRTVDG-G-----LVIMAVE  342 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~-----------~~~~~~~~~-G-----LlI~~v~  342 (378)
                      ++.+|+++.|.|...+-+ +..--+.|..|...++.+=|   ....           ..|+.++.+ .     |-|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFT-FTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCC-CcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            567799999999985432 22225789888655554322   1111           124444321 1     7788999


Q ss_pred             CCCCeEEEEEeCC
Q psy10772        343 ELDAGKYDCWLGN  355 (378)
Q Consensus       343 ~~DsG~Y~C~~~~  355 (378)
                      .+|++.|.|-...
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999997653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.90  E-value=0.22  Score=39.09  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=44.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC-c-----eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG-G-----LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~-G-----LlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..           ..|+.++.+ .     |-|.+|+.
T Consensus        10 ~~vkpg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGF-NIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCC-CCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            356789999999998642 1212257888876544433121 111           123333321 1     77889999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|-..
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.88  E-value=0.32  Score=38.64  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeecCc------eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVDGG------LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~~G------LlI~~v~~  343 (378)
                      -++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+.++.+-      |-|.+++.
T Consensus         9 ~lvkPg~sl~LsC~~SG~-~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGA-TSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             EEECTTCCEEEEEECC-C-TTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECCC-CCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            356789999999997532 222235789888654443211   1111         1244443221      88999999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|-..
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999765

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.77  E-value=0.26  Score=38.73  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..           ..|+.++.+      =|-|.+++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          11 LVKPGASVKISCKASGY-ISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEccC-cccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            46789999999998643 2222357898886555533121 111           124333211      1788899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTAvYYCAr~   99 (119)
T d1eapb1          90 DSAVYFCKRS   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.63  E-value=0.34  Score=38.19  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..           ..|+.++.+      =|-|.+|+.+
T Consensus        11 lvkPg~sl~LsC~~SG~-s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGF-TFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCC-CCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            56789999999998643 2222358998886555543221 111           124433321      1778889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTAvYYCAr~   99 (122)
T d1bz7b1          90 DTAIYYCTRG   99 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999999653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.45  E-value=0.5  Score=36.96  Aligned_cols=71  Identities=21%  Similarity=0.234  Sum_probs=44.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc----------CcceEeecC------ceEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVDG------GLVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~~------GLlI~~v~~~D  345 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+-|- +..          ..|+.++.+      -|-|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~-~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGF-PLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             EECTTSCEEEEEEECSS-CTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCC-CccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            46789999999988533 2222357898886555533221 111          124433321      27888999999


Q ss_pred             CeEEEEEeC
Q psy10772        346 AGKYDCWLG  354 (378)
Q Consensus       346 sG~Y~C~~~  354 (378)
                      ++.|.|-..
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999544

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.42  E-value=0.3  Score=38.21  Aligned_cols=71  Identities=20%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeec-C-----ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVD-G-----GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~-~-----GLlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- ++..--+.|..|...++.+=| .+.+           ..|+.++. .     =|-|.+++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~-s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGY-TFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEccC-ccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            467789999999998632 222235789887654443211 1111           12444432 1     177888999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|-.
T Consensus        89 eDtAvYYCAr   98 (116)
T d1mjuh1          89 DDSAVYYCAN   98 (116)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEcc
Confidence            9999999964

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.086  Score=39.65  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEe
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWL  353 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~  353 (378)
                      .+..|.+|.|.|....+ .   .....+..+.. ..  +..+.... ....--..|.+|+.+|+|.|.|.-
T Consensus        14 ~V~~G~~VTL~C~~~~~-~---~~f~L~keg~~-~~--~~~~~~~~-~~~~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1          14 VITQGSPVTLRCQGGQE-T---QEYRLYREKKT-AP--WITRIPQE-LVKKGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             EEETTCCEEEEEECCTT-C---CCEEEEESSSC-CH--HHHTSCHH-HHTTTEEEESSCCGGGCEEEEEEE
T ss_pred             ccCCCCcEEEEEeCCCC-C---CEEEEEECCCC-cc--cEEEccCC-CCCEEEEEEEecCHHHCCeEEEEE
Confidence            46789999999986321 2   11222221211 00  00000000 011224789999999999999975

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=90.27  E-value=0.29  Score=38.85  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-c----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-S----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-~----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +. .          ..|+.++.+      =|-|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGF-TFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCc-cccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            56789999999998632 2222357898887655544221 11 1          123344322      1788899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DtavYYCAr   98 (126)
T d1dfbh1          90 DMALYYCVK   98 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEe
Confidence            999999964

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=90.24  E-value=0.39  Score=37.74  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             EEEeCCeeeeeeeeccCCCC-CCCCeEEEEecccCceeeEe-eccC----------cceEeec-Cc-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASM-ANQPMSWYHYSKDKGRYQIK-FRSD----------KFIRTVD-GG-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~L-a~~~v~W~~~~~~~~~~~l~-~~~~----------~~~~~~~-~G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+-+-- ..--+.|..|...++.+=|- +..+          .|+.++. ..     |-|.+|+.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            46789999999987532210 11136798876545433111 1111          2443332 11     888899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        91 DtAvYYCAr   99 (120)
T d1ai1h1          91 DTAMYYCSR   99 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEEEEe
Confidence            999999963

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.15  Score=38.53  Aligned_cols=62  Identities=15%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             eCCeeeeeeeecc--CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|+.+.|.|..++  |..+   .|+|+.|+.+-..  ..  .. ......+|    .-...+..+|.+.|.|+-.-
T Consensus        18 ~~~~~tL~C~~~gFyP~~i---~v~W~~ng~~v~~--~~--~~-~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H   85 (100)
T d1k5nb_          18 NGKSNFLNCYVSGFHPSDI---EVDLLKNGERIEK--VE--HS-DLSFSKDWSFYLLYYTEFTPTEKDEYACRVNH   85 (100)
T ss_dssp             TTSCEEEEEEEEEEBSSCC---EEEEEETTEECTT--CE--EC-CCEECTTSCEEEEEEEEECCCSSCCEEEEEEC
T ss_pred             CCCCEEEEEEECccCCCCc---EEEEEECCEecCC--cc--cc-ceecCCCCcEEEEEEeEECCCCCCEEEEEEEe
Confidence            4778889999986  5443   7899998764110  00  01 12233444    33445667788899999763

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.12  E-value=0.37  Score=38.02  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEee-cCc-----eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTV-DGG-----LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~-~~G-----LlI~~v~~  343 (378)
                      -++.+|+++.|.|...+- .+..--+.|..|...++.+=| .+..           ..|+.++ +..     |-|.+++.
T Consensus        11 ~~vkpg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGY-SFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             EEECTTCCEEEEEEECSS-CGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEcCC-CccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            357889999999998532 122224789887654443322 0111           1344333 222     77889999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|-..
T Consensus        90 eDtA~YYCAr~  100 (122)
T d1vgeh1          90 EDTAVYYCARD  100 (122)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.10  E-value=0.4  Score=38.20  Aligned_cols=71  Identities=14%  Similarity=0.125  Sum_probs=44.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+.++.+      =|-|.+++.+
T Consensus        10 ~~kPg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGG-TFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EECTTCCEEEEEEETTS-CCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCC-CccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            56789999999998632 232235789888665554322   1011         124444321      1777889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|--.
T Consensus        89 DtAvYyCAr~   98 (130)
T d1rhhb1          89 DTAVYYCARD   98 (130)
T ss_dssp             GCEEEEEEEE
T ss_pred             CcEEEEEEee
Confidence            9999999643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.06  E-value=0.33  Score=38.73  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccC-----------cceEeecC---c---eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSD-----------KFIRTVDG---G---LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~-----------~~~~~~~~---G---LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..+           .|+.++.+   .   |-|.+++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~-~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGG-TFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EECTTCCEEEEEECCSS-CGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            56789999999987532 2222358999886655543221 1111           23333321   1   778899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DtA~YYCAr~   99 (130)
T d1rzga1          90 DTAVFYCASP   99 (130)
T ss_dssp             GCEEEEEEEC
T ss_pred             ccEEEEEEEe
Confidence            9999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.06  E-value=0.25  Score=38.86  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=44.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc----------CcceEeec-C-----ceEEeeecCCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVD-G-----GLVIMAVEELD  345 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~-~-----GLlI~~v~~~D  345 (378)
                      ++.+|+++.|.|...+- ++..--+.|..|...++.+=|- +..          ..|+.++. .     =|-|.+++.+|
T Consensus        11 ~vkPG~Sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGF-TLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             EECTTCCEEEEEEEESS-CTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCC-cccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            46779999999998533 2333357898886555543221 111          12333332 1     27888999999


Q ss_pred             CeEEEEEe
Q psy10772        346 AGKYDCWL  353 (378)
Q Consensus       346 sG~Y~C~~  353 (378)
                      ++.|.|--
T Consensus        90 tA~YyCAr   97 (118)
T d1lo4h1          90 TAIYYCAR   97 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEecc
Confidence            99999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=90.02  E-value=0.23  Score=39.15  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCC-CCeEEEEecccCceeeEe-ecc----------CcceEeec-C-----ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVD-G-----GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~-~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~-~-----GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++.. --+.|..|...++.+=|- +..          ..|+-++. .     =|-|.+|+.+
T Consensus        11 ~vkPg~sl~LsC~~SG~-s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGY-SITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             EECTTSCEEEEEEEESS-CTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccc-cccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            56789999999988642 2211 136898876554432111 111          12333321 1     1788889999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |+..|.|-.
T Consensus        90 DTAvYYCAr   98 (119)
T d1ncwh1          90 DTATYYCAG   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEeE
Confidence            999999953

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.96  E-value=0.36  Score=38.17  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeec-Cc-----eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVD-GG-----LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~-~G-----LlI~~v~~  343 (378)
                      ..+.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+           ..|+.++. ..     |-|.+|+.
T Consensus        10 ~~~kpg~sl~LsC~~SG~-~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGY-SFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             EEEETTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcCC-CCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            356789999999998642 1111247898886655544221 111           13443332 21     77888999


Q ss_pred             CCCeEEEEE
Q psy10772        344 LDAGKYDCW  352 (378)
Q Consensus       344 ~DsG~Y~C~  352 (378)
                      +|++.|.|-
T Consensus        89 eDTA~YYCA   97 (124)
T d2b1hh1          89 SDTALYYCA   97 (124)
T ss_dssp             GGCEEEEEE
T ss_pred             ccceEEEEe
Confidence            999999995

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=89.83  E-value=0.32  Score=38.85  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=44.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe---ecc-----------CcceEeecCc------eEEeeec
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK---FRS-----------DKFIRTVDGG------LVIMAVE  342 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~---~~~-----------~~~~~~~~~G------LlI~~v~  342 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|-   ...           ..|+.++.+-      |-|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~-s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGF-TFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCC-CCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            46789999999987532 1222357898887655543221   000           1234333221      7888999


Q ss_pred             CCCCeEEEEEeC
Q psy10772        343 ELDAGKYDCWLG  354 (378)
Q Consensus       343 ~~DsG~Y~C~~~  354 (378)
                      .+|++.|.|-..
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999765

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.75  E-value=0.5  Score=37.48  Aligned_cols=71  Identities=20%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeec-C-----ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVD-G-----GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~-~-----GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..--+.|..|...++.+=|   ....         ..|+.++. .     =|-|.+++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGG-SFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESS-CSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            46779999999998642 222235889888655554312   1111         12433332 1     1788899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|--.
T Consensus        90 DTavYYCAR~   99 (127)
T d2fx7h1          90 DTAVYYCARE   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.75  E-value=0.36  Score=38.16  Aligned_cols=71  Identities=20%  Similarity=0.241  Sum_probs=43.3

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeec-Cc-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVD-GG-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~-~G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+-++. ..     |-|.+|+.+
T Consensus        11 lvkPG~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGF-TFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECcc-cCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            56789999999987532 121225789887654443211   1111         12333332 11     888899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DtAvYYCAr~   99 (123)
T d1mqkh_          90 DTAMYYCVRH   99 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cccceeEEec
Confidence            9999999543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.64  E-value=0.38  Score=38.12  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..           ..|+.++.+      =|-|.+|+.+
T Consensus        11 lvkpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNF-RISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEETTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEeECCc-cCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            56789999999987532 2222357898886655543221 111           124444321      1778899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.59  E-value=0.21  Score=39.43  Aligned_cols=71  Identities=21%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eeccC-----------cceEee-cCc-----eEEeee
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRSD-----------KFIRTV-DGG-----LVIMAV  341 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~~-----------~~~~~~-~~G-----LlI~~v  341 (378)
                      ..+.+|+++.|.|...+- .+..--+.|..|...++.+=|   ...++           .|+.++ +..     |-|.++
T Consensus        10 ~~vkPG~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGF-TFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             EEECTTCEEEEEEEEESS-CGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             ceECCCCCEEEEEEEcCC-CCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            356789999999988543 222224689887655554322   11011           122222 111     888999


Q ss_pred             cCCCCeEEEEEe
Q psy10772        342 EELDAGKYDCWL  353 (378)
Q Consensus       342 ~~~DsG~Y~C~~  353 (378)
                      +.+|++.|.|-.
T Consensus        89 ~~eDTAvYYCAr  100 (121)
T d1nfdf1          89 RVDDTAIYYCTR  100 (121)
T ss_dssp             CGGGCEECEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999954

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.59  E-value=0.41  Score=37.83  Aligned_cols=71  Identities=20%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+           ..|+.++.+      =|-|.+++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGY-IFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EECTTCEEEEEEEEESS-CGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            46789999999998532 2222257898886555543111 111           124444321      1778899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|--.
T Consensus        90 DTAvYYCAR~   99 (124)
T d1yedb1          90 DSAVYFCTRW   99 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEeccc
Confidence            9999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=89.57  E-value=0.38  Score=38.14  Aligned_cols=71  Identities=17%  Similarity=0.232  Sum_probs=42.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCC--CCeEEEEecccCceeeEe-ecc----------CcceEeec-C-----ceEEeeecC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMAN--QPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVD-G-----GLVIMAVEE  343 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~--~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~-~-----GLlI~~v~~  343 (378)
                      ++.+|+++.|.|...+- .+..  ..+.|+.|...++.+-|- +..          ..|+.++. +     =|-|.+++.
T Consensus        11 lvkPg~sv~LsC~~SG~-s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGF-SLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             EECTTCCEEEEEEEESS-CTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEeCC-ccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            46679999999986421 1211  135688775444432121 111          12443322 1     188889999


Q ss_pred             CCCeEEEEEeC
Q psy10772        344 LDAGKYDCWLG  354 (378)
Q Consensus       344 ~DsG~Y~C~~~  354 (378)
                      +|++.|.|-..
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999743

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.46  E-value=0.47  Score=37.31  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eec---------cCcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFR---------SDKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~---------~~~~~~~~~~------GLlI~~v~~~  344 (378)
                      .+.+|+++.|.|...+-+ +..--+.|..|...++.+=|   ...         ...|+.++.+      =|-|.+++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFT-FSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcC-CcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            467899999999985321 21124789887644443211   100         1124444332      1889999999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.43  E-value=0.38  Score=38.21  Aligned_cols=71  Identities=21%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC-c-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG-G-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~-G-----LlI~~v~~~  344 (378)
                      .+.+|+++.|.|...+- .+..--+.|..|...++.+=|- +..           ..|+.++.+ .     |-|.+++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGF-IFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCC-CccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            45779999999988532 2222357898886555543221 111           124333321 1     778889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTA~YYCAr~   99 (127)
T d2fb4h1          90 DTGVYFCARD   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEEe
Confidence            9999999643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.27  Score=36.76  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .+..|.+|.|.|.......   -...|+..+...   .+......    ...--.|.+|+.+|+|.|.|...
T Consensus        15 ~V~~G~~VTL~C~~~~~~~---~~f~L~k~g~~~---~~~~~~~~----~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPF---DRFSLAKEGELS---LPQHQSGE----HPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             EECTTCCCEEEEECSSSCC---SEEEEEETTCSS---CCSEEECS----SSEEEECCSCCGGGCEEEEEEEE
T ss_pred             ccCCCCeEEEEEeCCCCCc---eEEEEEECCccc---ceEEcCCC----cccEEEEeccccccCcEEEEEEE
Confidence            5678999999997421111   112333323210   01100000    01226788999999999999753

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.33  E-value=0.27  Score=38.48  Aligned_cols=69  Identities=22%  Similarity=0.291  Sum_probs=43.6

Q ss_pred             EEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-eccC----------cceEeecC------ceEEeeecCCCC
Q psy10772        284 VTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRSD----------KFIRTVDG------GLVIMAVEELDA  346 (378)
Q Consensus       284 ~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~~----------~~~~~~~~------GLlI~~v~~~Ds  346 (378)
                      +.+|+++.|.|.+.+- .+..--+.|..|...++++-|- +..+          .|+.++.+      =|-|.+++.+|+
T Consensus        12 vkPg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGF-SLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             CCTTSEECCEEECCSS-CTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             ECCCCCeEEEEEEeCc-ccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            4579999999998532 2222357898886655554231 1111          23333321      177889999999


Q ss_pred             eEEEEEe
Q psy10772        347 GKYDCWL  353 (378)
Q Consensus       347 G~Y~C~~  353 (378)
                      +.|.|-.
T Consensus        91 AvYyCAr   97 (116)
T d1fn4b1          91 GTYYCTR   97 (116)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999954

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.23  Score=36.70  Aligned_cols=58  Identities=31%  Similarity=0.565  Sum_probs=35.1

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEeeccCcceEeecCceEEeeecC-CCCeEEEEEeCCeeeEEEee
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGGLVIMAVEE-LDAGKYDCWLGNTVLCTHNL  363 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~GLlI~~v~~-~DsG~Y~C~~~~~~l~~~~~  363 (378)
                      |..+.|.|-.  +..   ..|.|.-++..    ++        ..+++-|.| .|.. .|+|.|.|+-+ .-+-+|.+
T Consensus        21 ~~~V~L~C~t--~eE---~~I~W~kd~~s----e~--------~~~GntltV-~VkE~~~aGnYTChk~-g~~Lnht~   79 (87)
T d3d85d1          21 GEMVVLTCDT--PEE---DGITWTLDQSS----EV--------LGSGKTLTI-QVKEFGDAGQYTCHKG-GEVLSHSL   79 (87)
T ss_dssp             CEEEEEECSS--SCC---SSCEEEETTCC----CC--------CEESSEEEE-EECSGGGCEEEEEEET-TEEEEEEE
T ss_pred             ccEEEEecCC--Ccc---cccEEeeCCcc----cc--------ccCCCEEEE-EEEeccCCcceeEeCC-CcEeeeEE
Confidence            5678999975  332   36999987543    12        122222333 4555 69999999975 44445544

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.23  E-value=0.62  Score=36.43  Aligned_cols=70  Identities=24%  Similarity=0.251  Sum_probs=43.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeec-Cc-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVD-GG-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~-~G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+           ..|+.++. ..     |-|.+++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~-~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGF-DFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECCc-cccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            56789999999988543 2222247898876544433121 111           12333332 11     788899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DtAvYYCAr   98 (118)
T d2fbjh1          90 DTALYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeeE
Confidence            999999974

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=88.77  E-value=0.68  Score=36.19  Aligned_cols=71  Identities=20%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~~------GLlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+.++.+      =|-|.+|+.
T Consensus        10 ~~~kPg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGF-TFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESS-CSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccc-cCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            456789999999998542 222235788877654443211   1111         113332211      177888999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|-.
T Consensus        89 eDtAvYYCAr   98 (118)
T d1ct8b1          89 EDSAIYYCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999965

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.65  E-value=0.58  Score=37.07  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC-c-----eEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG-G-----LVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~-G-----LlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=|- +.+           ..|+.++.+ .     |-|.+|+.
T Consensus        10 ~~~kpg~sl~lsC~~SG~-~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGY-RFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCC-CCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            456789999999998642 2222357898886555543121 111           124444322 1     77889999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|--
T Consensus        89 eDtAvYYCAR   98 (127)
T d1n0xh1          89 ADTAVYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999999963

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.61  E-value=0.51  Score=36.89  Aligned_cols=71  Identities=23%  Similarity=0.202  Sum_probs=44.2

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eecc---------CcceEeec-C-----ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFRS---------DKFIRTVD-G-----GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~~---------~~~~~~~~-~-----GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ....         ..|+-++. .     =|-|.+++.+
T Consensus        11 ~~kpg~sl~lsC~~SG~-~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGY-SFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             ECCTTCCEEEEEEEESS-CSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            44679999999998632 222235789887655554322   1111         12443332 1     1778899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.58  E-value=0.38  Score=38.23  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             EEEeCCeeeeeeeeccCCCCCC-CCeEEEEecccCceeeEe-ecc----------CcceEeec-Cc-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMAN-QPMSWYHYSKDKGRYQIK-FRS----------DKFIRTVD-GG-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~-~~v~W~~~~~~~~~~~l~-~~~----------~~~~~~~~-~G-----LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+.. --+.|..|...++.+=|- +..          ..|+.++. ..     |-|.+|+.+
T Consensus        11 lvkPg~sl~LsC~~SG~-s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGY-SITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEESS-CTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEecc-cccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            46779999999987543 1211 247898886555433221 111          12332221 11     888899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DtAvYyCAr   98 (127)
T d3cx5j1          90 DTATYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeee
Confidence            999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.56  E-value=0.52  Score=37.32  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceee---Eeec---------cCcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQ---IKFR---------SDKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~---l~~~---------~~~~~~~~~~------GLlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=   |...         -..|+.++.+      =|-|.+++.
T Consensus         9 ~~~kPg~sl~LsC~~SG~-~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGY-IFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             EEECTTCCEEEEEEEESS-CTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEccC-CCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            356789999999998643 23223578887765444321   1100         1134333321      277889999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|--
T Consensus        88 eDTAvYYCAr   97 (126)
T d1lmka1          88 EDSAVYYCAR   97 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999963

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.32  E-value=0.47  Score=37.25  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..--+.|..|...++.+=|- +..           ..|+-++.+      =|-|.+++.+
T Consensus        11 ~vkpg~sl~LsC~vSG~-s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGY-TFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            56789999999998532 2222257888876544432111 111           123333211      1778899999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTAvYYCAr~   99 (120)
T d1ad9b1          90 DTAFYFCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEc
Confidence            9999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.24  E-value=0.47  Score=37.18  Aligned_cols=69  Identities=22%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eec--c---------CcceEeecC-c-----eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFR--S---------DKFIRTVDG-G-----LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~--~---------~~~~~~~~~-G-----LlI~~v~~~  344 (378)
                      .+.+|+++.|.|...+- .+..--+.|..|...++.+=| .+.  .         ..|+.++.+ .     |-|.+|+.+
T Consensus        11 ~~kpg~sl~lsC~~SG~-~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGY-TFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            46789999999987532 122224788887654443211 011  1         124433321 1     778889999


Q ss_pred             CCeEEEEE
Q psy10772        345 DAGKYDCW  352 (378)
Q Consensus       345 DsG~Y~C~  352 (378)
                      |++.|.|-
T Consensus        90 DTAvYYCA   97 (118)
T d2jelh1          90 DSAIYYCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceeeeEE
Confidence            99999994

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.73  E-value=0.81  Score=35.67  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=42.7

Q ss_pred             EEEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE-eecc-----------CcceEeecC------ceEEeeecC
Q psy10772        282 QTVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI-KFRS-----------DKFIRTVDG------GLVIMAVEE  343 (378)
Q Consensus       282 ~~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l-~~~~-----------~~~~~~~~~------GLlI~~v~~  343 (378)
                      .++.+|+++.|.|...+- .+..--+.|..|...++.+=| .+..           ..|+.++.+      =|-|.+++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~-s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1          10 VVARPGASVKMSCKASGY-TFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESS-CGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccc-CCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            356789999999987532 111224678887554443211 1111           113333211      178889999


Q ss_pred             CCCeEEEEEe
Q psy10772        344 LDAGKYDCWL  353 (378)
Q Consensus       344 ~DsG~Y~C~~  353 (378)
                      +|++.|.|--
T Consensus        89 eDtAvYYCAr   98 (117)
T d1mfah1          89 EDSAVYYCTR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999953

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.55  Score=34.87  Aligned_cols=64  Identities=17%  Similarity=0.300  Sum_probs=38.7

Q ss_pred             eCCeeeeeeeecc--CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .++.+.|.|.+++  |..   ..|+|+.|+.+......   .....+..++|    ...+.+...|...|.|...-
T Consensus        14 ~~~~~tL~C~~~gFyP~~---i~v~W~~dg~~~~~~~~---~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H   83 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQN---ITMKWLKDKQPMDAKEF---EPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEH   83 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSC---CEEEEEETTEECCGGGS---CCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEEC
T ss_pred             CCCCEEEEEEEeeEECCC---CEEEEEECCEECccCcc---cccceEeCCCceEEEEEEEEECCCCCCEEEEEEEe
Confidence            3566789999986  555   37999998765110000   11112222333    34556777888899998764

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.27  E-value=0.43  Score=37.93  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ecc-----------CcceEeecC---c---eEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FRS-----------DKFIRTVDG---G---LVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~~-----------~~~~~~~~~---G---LlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- ++..--+.|..|...++.+-|- +..           ..|+.++.+   .   |-|.+++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~-s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGD-TFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            56789999999998642 2222246888776554443221 111           124433321   1   777889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        90 DTA~YYCAr~   99 (128)
T d2nxyd1          90 DTAVYFCAGV   99 (128)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEE
Confidence            9999999754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=86.68  E-value=0.84  Score=36.39  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeE---eec---------cCcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQI---KFR---------SDKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l---~~~---------~~~~~~~~~~------GLlI~~v~~~  344 (378)
                      ++.+|+++.|.|...+- .+..--+.|..|...++.+=|   ...         -..|+.++.+      =|-+.+++.+
T Consensus        10 ~vkPg~sl~LsC~~SG~-~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGA-TLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EECTTCCEEEEEEESSS-CSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            57789999999998532 222224678777554443312   100         1124433322      1777889999


Q ss_pred             CCeEEEEEeC
Q psy10772        345 DAGKYDCWLG  354 (378)
Q Consensus       345 DsG~Y~C~~~  354 (378)
                      |++.|.|-..
T Consensus        89 DtA~YYCAr~   98 (133)
T d1rzfh1          89 DTAVYYCASN   98 (133)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEeeec
Confidence            9999999654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.64  E-value=0.36  Score=37.77  Aligned_cols=70  Identities=20%  Similarity=0.252  Sum_probs=42.1

Q ss_pred             EEEeCCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEe-ec-c----------CcceEeecC------ceEEeeecCC
Q psy10772        283 TVTWGQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIK-FR-S----------DKFIRTVDG------GLVIMAVEEL  344 (378)
Q Consensus       283 ~~~~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~-~~-~----------~~~~~~~~~------GLlI~~v~~~  344 (378)
                      .+.+|+++.|.|...+- ++..--+.|..|...++.+=|- +. .          ..|+.++.+      =|-|.+|+.+
T Consensus        11 ~vkpg~sl~LsC~~SG~-s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGY-IFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             EECTTSCEEEEEECCHH-HHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECCC-CCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            46789999999987532 1111146788775544433221 11 1          124444322      1778899999


Q ss_pred             CCeEEEEEe
Q psy10772        345 DAGKYDCWL  353 (378)
Q Consensus       345 DsG~Y~C~~  353 (378)
                      |++.|.|-.
T Consensus        90 DTAvYYCAr   98 (117)
T d1b2wh1          90 DTAVYYCAR   98 (117)
T ss_dssp             GCEEEECCE
T ss_pred             cceEEEEcc
Confidence            999999954

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=85.62  E-value=0.61  Score=35.03  Aligned_cols=63  Identities=24%  Similarity=0.379  Sum_probs=36.9

Q ss_pred             eCCeeeeeeeecc--CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|..+.|-|.+.+  |..   ..|+|+.|+.+... .+.  ... .....+|    .-.+.+..++.+.|.|...-
T Consensus        16 ~~~~~tL~C~v~gFyP~~---i~v~W~~ng~~v~~-~~~--~t~-~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   84 (100)
T d1muja1          16 LGQPNTLICFVDNIFPPV---INITWLRNSKSVAD-GVY--ETS-FFVNRDYSFHKLSYLTFIPSDDDIYDCKVEH   84 (100)
T ss_dssp             TTSCEEEEEEEEEECSSC---CEEEEEESSSBCCS-SEE--ECC-CEECTTSCEEEEEEEEECCCTTCCEEEEEEC
T ss_pred             cCCCEEEEEEEEeEECCC---CEEEEEeCCeeccC-Cce--eee-eEECCCCCEEEEEEeEEcCCCCCEEEEEEEE
Confidence            4777889999986  444   37999998865210 011  000 1112222    22234556788899999764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.69  E-value=0.54  Score=35.00  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccC--cee-eEeeccCcceEeecCceEEeeecCCCCeEEEEEeC
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDK--GRY-QIKFRSDKFIRTVDGGLVIMAVEELDAGKYDCWLG  354 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~--~~~-~l~~~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~  354 (378)
                      .|+.+.|.|.+++-.. +...|+|+.|+.+.  ... ......+..+..    ...+.+..++.+.|.|...
T Consensus        17 ~~~~~tL~C~v~gf~P-~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~----~s~l~v~~~~~~~ytC~V~   83 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHP-PHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYI----LAHTEFTPTETDTYACRVK   83 (99)
T ss_dssp             TTSCEEEEEEEEEEBS-SCCEEEEEETTEECTTCEEEEEEECTTCCEEE----EEEEEECCCSSCCEEEEEE
T ss_pred             CCCcEEEEEEEEEEEC-CCcEEEEeeCCeecCCcEECceeECCCCCEEE----EEEeEecCcCCCEEEEEEE
Confidence            3677889999985421 12378999987641  110 111112221111    3344556778889999975

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=1.1  Score=32.53  Aligned_cols=52  Identities=27%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             CCeeeeeeeeccCCCCCCCCeEEEEecccCceeeEee-ccCcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKLPASMANQPMSWYHYSKDKGRYQIKF-RSDKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~~~~La~~~v~W~~~~~~~~~~~l~~-~~~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ..+|+|.|-..      ..+|+|+..+..     +.. ..++.-+  +.|=.    ...=-|.|.|...+
T Consensus        17 dg~V~L~Cn~~------~k~i~W~kdg~~-----i~~~~~~~ktl--nLG~~----~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          17 DGSVLLTCDAE------AKNITWFKDGKM-----IGFLTEDKKKW--NLGSN----AKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSEEEEEECSC------SSEEEEEETTEE-----EEEEESSCCCE--EEEEG----GGCCEEEEEEESSS
T ss_pred             CCeEEEEeCCC------CcEEEEecCCeE-----eecccCCccee--ecCCc----ccCCCcceEcCCCC
Confidence            56999999642      137899886653     321 1222222  22322    22338999998654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=0.85  Score=33.61  Aligned_cols=64  Identities=8%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             eCCeeeeeeeeccCCCCCCCCeEEEEecccC--ceeeEeecc-CcceEeecCceEEeeecCCCCeEEEEEeCC
Q psy10772        286 WGQSVHLSCFVKLPASMANQPMSWYHYSKDK--GRYQIKFRS-DKFIRTVDGGLVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       286 ~G~s~~L~C~~r~~~~La~~~v~W~~~~~~~--~~~~l~~~~-~~~~~~~~~GLlI~~v~~~DsG~Y~C~~~~  355 (378)
                      .|+.+.|.|...+-  -|++.|+|+.|+.+.  ......... ++.+.+. .-|.   |...+...|.|....
T Consensus        15 s~~~~~L~C~~~g~--~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~-S~L~---v~~~~~~~~tC~V~h   81 (95)
T d1dr9a2          15 TSNIRRIICSTSGG--FPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLD---FNMTTNHSFMCLIKY   81 (95)
T ss_dssp             STTEEEEEEEEEEE--SSCEEEEEEESSCEECCSEEEEEECTTTCCEEEE-EEEE---EETTSCEEEEEEEEE
T ss_pred             CCCEEEEEEEECcc--cCCCEEEEecCCcEecccceeeEecCCCccEEEE-EEEE---ccCCccceEEEEEEe
Confidence            36778899999752  123589999887541  110111111 1212211 1132   345567899998864

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=80.14  E-value=1.2  Score=33.08  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             CCeeeeeeeecc--CCCCCCCCeEEEEecccCceeeEeeccCcceEeecCc----eEEeeecCCCCeEEEEEeCC
Q psy10772        287 GQSVHLSCFVKL--PASMANQPMSWYHYSKDKGRYQIKFRSDKFIRTVDGG----LVIMAVEELDAGKYDCWLGN  355 (378)
Q Consensus       287 G~s~~L~C~~r~--~~~La~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~G----LlI~~v~~~DsG~Y~C~~~~  355 (378)
                      ++...|.|.++.  |..   -.|+|+.|+.+.... ..  .+. ....++|    +..+.+...+.+.|.|...-
T Consensus        18 ~~~~tL~C~v~~F~P~~---i~v~W~~~g~~~~~~-~~--~~~-~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H   85 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGS---IEVRWFRNGQEEKTG-VV--STG-LIQNGDWTFQTLVMLETVPRSGEVYTCQVEH   85 (98)
T ss_dssp             ---CEEEEEEEEEBSSC---CEEEEEETTEECCSS-EE--ECC-CEECSSSCEEEEEEEECCCCTTCEEEEEEEC
T ss_pred             CCceEEEEEEeeeECCC---cEEEEEECCEEcCCC-CE--ECe-EEeCCCcEEEEEEEeeEcCCCCCEEEEEEEE
Confidence            455579999986  444   379999987642110 11  111 1222333    44456778888999999864