Psyllid ID: psy10794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESEHDCEKGL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccHHHcHHccc
Coil and Loop (DISEMBL)
msnrgfrdrrrkdqsstnvniggkknlidenspvVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEElcgpeaeesqvklltptefvlgvgdlsgELMRYAIGsvaagsdstdcinaTNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNesehdcekgl
Flexible Loop (DISEMBL)
msnrgfrdrrrkdqsstnvniggkknlidenspvVQEFRKYAIimntkqdkyeRLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGsvaagsdstdcINATNTVRDLYVAMLASGVSRVKEASRKLAVLkqslqkmertvytvkvrgsemprhviahvvnesehdcekgl
Low Complexity Region (SEG)
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESEHDCEKGL
Disordered region (IsUnstruct)
*******************************SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCG*****SQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVV***********
Disordered Region (DISOPRED)
************************************EFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC***AEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHV****************
Disordered Region (DISEMBL)
*****************NVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNE*********
Disordered Region (DISPRO)
*******************************SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRH****VV***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLxxxxxxxxxxxxxxxxxxxxxHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRxxxxxxxxxxxxxxxxxxxxxVYTVKVRGSEMPRHVIAHVVNESEHDCEKGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9QZE7	290	Translin-associated prote	yes	N/A	0.930	0.875	0.394	5e-45
Q5RC21	290	Translin-associated prote	yes	N/A	0.945	0.889	0.382	5e-45
Q99598	290	Translin-associated prote	yes	N/A	0.945	0.889	0.382	5e-45
Q9JHB5	290	Translin-associated prote	yes	N/A	0.930	0.875	0.386	7e-45
Q4R599	290	Translin-associated prote	N/A	N/A	0.937	0.882	0.385	9e-45
O74955	231	Translin-associated prote	yes	N/A	0.736	0.870	0.286	5e-16
Q08DM8	228	Translin OS=Bos taurus GN	no	N/A	0.531	0.635	0.264	0.0005

>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 165/274 (60%), Gaps = 20/274 (7%)

Query: 5   GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
           GFR +R+ D    N    GK   +  +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct: 9   GFR-KRKHDTFPHNQRREGKDASL--SSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query: 65  ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
           ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct: 66  ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKILQ-VAQELSGEDMHQFHRAVTTGL 124

Query: 124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM--------EELCGPEAEESQVKL------LTP 169
           QE++EA +F H++K+  LI  + + +++        +E   P AE  + +L      LTP
Sbjct: 125 QEYVEAVSFQHFIKTRSLISMEEINKQLTFTAEDSGKESKTPPAEGQEKQLVTWRLKLTP 184

Query: 170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
            +++LGV DL+GELMR  I SV  G D       +  +R +Y      G +   E S+KL
Sbjct: 185 VDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query: 230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
             LKQSL K+E   Y +KVRGSE+P+H++A V +
Sbjct: 244 YTLKQSLAKVENACYALKVRGSEIPKHMLADVFS 277

Possible role in spermatogenesis.
Mus musculus (taxid: 10090)

>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 167/282 (59%), Gaps = 24/282 (8%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM----------EELCGPEAEESQVK 165
            RA + GLQE++EA +F H++K+  LI  D + +++           +    +A++ Q  
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176

Query: 166 L----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
                +TP +++LGV DL+GELMR  I SV  G D       +  +R +Y      G + 
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235

Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
             E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A V +
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFS 277

Possible role in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 167/282 (59%), Gaps = 24/282 (8%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM----------EELCGPEAEESQVK 165
            RA + GLQE++EA +F H++K+  LI  D + +++           +    +A++ Q  
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176

Query: 166 L----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
                +TP +++LGV DL+GELMR  I SV  G D       +  +R +Y      G + 
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235

Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
             E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A V +
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFS 277

Possible role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 164/274 (59%), Gaps = 20/274 (7%)

Query: 5   GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
           GFR +R+ D    N    GK      +SPV+  F+ +   ++T+ DKYERLVK+SRDIT+
Sbjct: 9   GFR-KRKHDNFPHNQRREGKD--ASSSSPVMLAFKSFQQELDTRHDKYERLVKLSRDITV 65

Query: 65  ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
           ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct: 66  ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKMLQ-VAQELSGEDMHQFHRAVTTGL 124

Query: 124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM--------EELCGPEAEESQVKL------LTP 169
           QE++EA +F H++++  LI  + + +++        +E   P A+    +L      +TP
Sbjct: 125 QEYVEAVSFQHFIRTRSLISMEEINRQLTFTTDDSGKESKAPPADGQDKQLVTWRLKITP 184

Query: 170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
            +++LGV DL+GELMR  I SV  G D       +  +R +Y      G +   E S+KL
Sbjct: 185 VDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query: 230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
             LKQSL K+E   Y +KVRGSE+P+H++A V +
Sbjct: 244 YTLKQSLSKVENACYALKVRGSEIPKHMLADVFS 277

Possible role in spermatogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1

 Score =  180 bits (457), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 166/280 (59%), Gaps = 24/280 (8%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM--------EELCGPEAEESQVKL- 166
            RA + GLQE++EA +F H++K+  LI  D + +++        +E   P ++    +  
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTDDNGKENKTPSSDTQDEQFG 176

Query: 167 -----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
                +TP +++LGV DL+GELMR  I SV  G D       +  +R +Y      G + 
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235

Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHV 261
             E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A V
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADV 275

Possible role in spermatogenesis.

Macaca fascicularis (taxid: 9541)

>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 120/223 (53%), Gaps = 22/223 (9%)

Query: 36  QEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNIL 95
           +EF  +   +   QDK E+++++SR+ITI+SKR+IFLLH    SD   + ++ + R +I 
Sbjct: 3   EEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFD-RTSIF 61

Query: 96  ---MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKME 152
              +    +S+K EL G +  ++  A + GLQE++EA TF  +L++  L+          
Sbjct: 62  EKKIHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLS--------- 112

Query: 153 ELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLY- 211
             C   +    +  +   ++VLGV D++GE+MR+ + + +  S           +R L+ 
Sbjct: 113 --CKDSSFRISINFI---DYVLGVCDMTGEIMRFLVTNGSKFS-VQQLTQQVKFLRGLHK 166

Query: 212 -VAMLASGVSRVK-EASRKLAVLKQSLQKMERTVYTVKVRGSE 252
             + +    S+VK E  +KL+V++ S+ K+E   Y+  +R ++
Sbjct: 167 NCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILREAD 209

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08DM8|TSN_BOVIN Translin OS=Bos taurus GN=TSN PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 96  MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
           ++TH  S+K +   E  Y++   +   LQ  +    F+ YL+S  L+      + + E+ 
Sbjct: 68  VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLV----TREAVTEIL 123

Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
           G E +  +   L   +++ GV  L+ EL R ++ SV AG  S     +T      ++  L
Sbjct: 124 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 177

Query: 216 ASGVS--RVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
            SG     +K  S  ++   LK  ++K+E  VY + +RG
Sbjct: 178 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
307169093	288	Translin-associated protein X [Camponotu	0.952	0.902	0.441	1e-52
345488032	326	PREDICTED: translin-associated protein X	0.934	0.782	0.424	3e-52
332026724	329	Translin-associated protein X [Acromyrme	0.930	0.772	0.422	2e-51
340714293	252	PREDICTED: translin-associated protein X	0.890	0.964	0.424	2e-51
157126085	313	translin associated factor x [Aedes aegy	0.831	0.725	0.429	2e-50
307211247	302	Translin-associated protein X [Harpegnat	0.945	0.854	0.4	2e-50
346468685	316	hypothetical protein [Amblyomma maculatu	0.919	0.794	0.392	9e-49
427787621	310	Putative translin-associated protein x [	0.893	0.787	0.405	1e-48
350417463	250	PREDICTED: translin-associated protein X	0.820	0.896	0.401	5e-48
125773329	299	GA18631 [Drosophila pseudoobscura pseudo	0.820	0.749	0.396	2e-47

>gi|307169093|gb|EFN61935.1| Translin-associated protein X [Camponotus floridanus]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 176/272 (64%), Gaps = 12/272 (4%)

Query: 1   MSNRGFRDRRRKDQSSTNVNIG--GKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MS +G R R R       +N+G  GK+ L  ID+N+ +VQ+FR YA  ++ K D+YER+ 
Sbjct: 1   MSGKGGR-RHRGHHDKDKINLGDKGKEVLENIDDNNIIVQQFRGYAAELDAKHDRYERIF 59

Query: 57  KISRDITIESKRVIFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           KI+RD+ IESKR+IFLLHT+ + S    VL+ A+SRL+ + +T FK I  EL G+D YQ+
Sbjct: 60  KINRDVGIESKRIIFLLHTIDKESKRNVVLDAAKSRLDNMARTLFKDIANELNGQDAYQF 119

Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGP--EAEESQVK--LLTPTE 171
            RA+ AGL+E++EA TF  YL++  +     +E  +     P    E+S  +  ++TPT+
Sbjct: 120 HRAYRAGLEEYVEALTFHEYLQNGEMQDCTKLESALTYHTTPTDSTEQSITRKVMVTPTD 179

Query: 172 FVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLA-SGVSRVKEASRKLA 230
           ++LG+ DL+GELMR  I ++A G D + C    N VR +YVA L  + V+   E ++K+ 
Sbjct: 180 YILGIADLTGELMRKCINNLAIG-DISSCYQTCNFVRKIYVAFLGYTSVAFSNEMNKKIF 238

Query: 231 VLKQSLQKMERTVYTVKVRGSEMPRHVIAHVV 262
            LKQSL KME   YT+KVRGSE+P+H++A V 
Sbjct: 239 TLKQSLTKMENACYTIKVRGSEIPKHMLADVA 270

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488032|ref|XP_003425818.1| PREDICTED: translin-associated protein X-like [Nasonia vitripennis]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 178/297 (59%), Gaps = 42/297 (14%)

Query: 12  KDQSSTNVNIGGKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRV 69
           K++   NV   G++ L  I+ENSPV+++F++YA+ ++ K D+YERL+KISRDITIESKR+
Sbjct: 20  KNRKQINVGDKGREVLAKINENSPVIKQFQEYAVELDAKHDRYERLIKISRDITIESKRI 79

Query: 70  IFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIE 128
           IFLLHTL + S    VL EAE RLN L+   FK+I  EL GED Y Y+RA+ AGLQEF+E
Sbjct: 80  IFLLHTLDKESKKNAVLGEAEKRLNNLITVLFKNIAQELDGEDSYHYLRAYRAGLQEFVE 139

Query: 129 AYTFLHYLKSNHLIGWDHVEQKME---ELCGP----------EAEES----QVK------ 165
           A TF  +L+++ L     +E+       +  P          EA ES    Q++      
Sbjct: 140 AITFYWFLQNSTLYNLKKLEESFNYTINISKPTETEKNEKTVEANESDQTNQIEITEVTN 199

Query: 166 -------------LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYV 212
                        L+ P +++LG+ DL+GELMR  I ++ +G D + C    N VR +Y 
Sbjct: 200 DSDQPIEQKTIRFLMPPADYILGIADLTGELMRKCINNLTSG-DISSCYQTCNFVRSMYK 258

Query: 213 AMLAS-GVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESEHD 268
             L   G+S  +E +RKL  L+QSL KME   YT+KVRGSE+P+H++A V   +  D
Sbjct: 259 GFLGCVGISG-REVARKLYTLRQSLIKMENVCYTIKVRGSEIPKHMLADVATIAAED 314

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026724|gb|EGI66833.1| Translin-associated protein X [Acromyrmex echinatior]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 178/270 (65%), Gaps = 16/270 (5%)

Query: 7   RDRRRKDQSSTNVNIG--GKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDI 62
           R+R+  D+    +N+G  GK+ +  I+ENS V+Q+F +YA  ++ K D+YER+ KI+RD+
Sbjct: 44  RNRKHHDKEKI-INLGDKGKEVMEDINENSLVIQQFHEYAAELDAKHDRYERIFKINRDV 102

Query: 63  TIESKRVIFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
            IESKR+IFLLHT+ + S    VL+ A++RL+ ++Q  F++I  EL G+D YQ+ RA+ A
Sbjct: 103 GIESKRIIFLLHTIDKESKRNAVLDAAKTRLDNVVQKLFRNIATELDGQDAYQFHRAYRA 162

Query: 122 GLQEFIEAYTFLHYLKSNHLIGWDHVEQKM--EELCGP--EAEESQVK----LLTPTEFV 173
           G++E+IEA TF  YL++  +  W  +E+ +    +  P   +E+S  K    ++TPT+++
Sbjct: 163 GIEEYIEALTFHEYLQNGDMQDWSALEKALTYHTISSPTDSSEQSTSKTMQVMVTPTDYI 222

Query: 174 LGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLA-SGVSRVKEASRKLAVL 232
           LG+ DL+GELMR  I ++A G D + C    N VR +Y+A L  + V    E ++K+  L
Sbjct: 223 LGIADLTGELMRKCINNLAIG-DVSSCYQTCNFVRKIYIAFLGYTSVVHNNEVNKKIITL 281

Query: 233 KQSLQKMERTVYTVKVRGSEMPRHVIAHVV 262
           K SL KME   YT+KVRGSE+P+H++A V 
Sbjct: 282 KHSLTKMENACYTIKVRGSEIPKHMLADVA 311

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714293|ref|XP_003395664.1| PREDICTED: translin-associated protein X-like [Bombus terrestris]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 162/252 (64%), Gaps = 9/252 (3%)

Query: 26  NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL-LRSDTQKV 84
           ++ +++S ++Q+FR YA  ++ K D++ER+VK  RDITIESKR+IFLLHT+  +S  + V
Sbjct: 2   DITEQSSEILQQFRVYATKLDDKHDRFERIVKFGRDITIESKRIIFLLHTIDKKSKEESV 61

Query: 85  LEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGW 144
           L EA+ RL  + +T FKSI  EL  +D Y Y++A+  GL+E++EA TF  YLK +++  W
Sbjct: 62  LREADMRLQKVARTLFKSIAHELEDQDPYLYLKAYRNGLEEYVEAVTFYQYLKCDNMKSW 121

Query: 145 DHVEQKMEELCGPEAEESQVK----LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDC 200
             +E+    L     E S VK    L+ P E++LG+ DL+GELMR  I ++ AG D T C
Sbjct: 122 LEIEKT---LTYNNPEISNVKTIQVLVNPYEYILGIADLTGELMRLCINNLTAG-DRTSC 177

Query: 201 INATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAH 260
               N VRD+Y   L    +  +  +RKL  L+Q+L K+E   YT+KVRGSE+P+H++  
Sbjct: 178 YQTRNFVRDMYTCFLGCTNTSNRLMNRKLCTLEQNLHKIENVCYTIKVRGSEIPKHILVD 237

Query: 261 VVNESEHDCEKG 272
           ++NE   D ++ 
Sbjct: 238 LINEEYADSDEN 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126085|ref|XP_001654528.1| translin associated factor x [Aedes aegypti] gi|108873372|gb|EAT37597.1| AAEL010419-PA [Aedes aegypti]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 157/247 (63%), Gaps = 20/247 (8%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DEN+PVVQ FR+YA  ++ K D+YER+VK SRDITIESKR+IFLLHT+   +++  KV 
Sbjct: 43  VDENNPVVQCFREYARELDAKHDRYERIVKCSRDITIESKRIIFLLHTVDSKKNNQSKVC 102

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWD 145
            EA++RL  L +THF +I  EL G+D YQ++RA++AGLQEFIEAYTF  Y+ ++++  W+
Sbjct: 103 AEAKNRLQQLCRTHFATIAKELHGQDPYQFLRAYTAGLQEFIEAYTFFEYVSASNISHWN 162

Query: 146 HVEQKMEELCGPEAEESQ-----------------VKLLTPTEFVLGVGDLSGELMRYAI 188
            ++ ++     P  +  +                 +  L P EF LGVGDL+GE+MR  I
Sbjct: 163 AIQDQLRYKVKPHEDNDKKPAKEEQEEAEPEEIDMICPLPPMEFALGVGDLAGEVMRKCI 222

Query: 189 GSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKV 248
            S+ +G D   C +    +++LY   ++   ++ +E S+KL+ L+QSL K E   Y VKV
Sbjct: 223 NSLGSG-DVESCFDHCRFLQELYRGFISVVNAKNREFSQKLSTLRQSLLKSETVCYNVKV 281

Query: 249 RGSEMPR 255
           RG E  +
Sbjct: 282 RGGEAAK 288

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211247|gb|EFN87433.1| Translin-associated protein X [Harpegnathos saltator]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/280 (40%), Positives = 173/280 (61%), Gaps = 22/280 (7%)

Query: 4   RGFRDRRRKDQSSTNVNIG--GKKNL--IDENSPVVQEFRKYAIIMNTKQDKYERLVKIS 59
           +G R  R +  +   +N+G  G++ L  IDEN+PV+ +FR YA  ++ K D+YER+ K++
Sbjct: 5   KGGRKNRGQHHNKDKINVGDNGREVLESIDENNPVISQFRVYAADLDAKHDRYERIFKVN 64

Query: 60  RDITIESKRVIFLLHTLLR-SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRA 118
           RD+ IESKR+IFLLHT+ + S    VL  A+ RL+ + +  F+ I  EL G+D YQ+ RA
Sbjct: 65  RDVAIESKRIIFLLHTIDKESKRDIVLAGAKLRLDSVAKKLFRDIALELDGQDAYQFHRA 124

Query: 119 FSAGLQEFIEAYTFLHYLKSNHLI-GWDHVEQKMEELCGPEAEESQVK------------ 165
           + AGL+E++EA TF  YL++      W  +E+ +      +  ES  +            
Sbjct: 125 YRAGLEEYVEALTFYEYLENGGCTRDWTKLEEALTYYTTVKPSESSSETIDLEEKPVTKM 184

Query: 166 ---LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRV 222
              L+TPT++++G+ DL+GELMR  I ++A G D + C +  N VR +Y+A L    +  
Sbjct: 185 TRMLVTPTDYIMGMADLTGELMRKCINNLAVG-DISSCYHTCNFVRQMYIAFLGYTSACS 243

Query: 223 KEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVV 262
            E ++K+  LKQSL KME+T YT+KVRGSE+P+H++A V 
Sbjct: 244 HEMNKKVFTLKQSLAKMEKTCYTIKVRGSEIPKHMLADVA 283

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468685|gb|AEO34187.1| hypothetical protein [Amblyomma maculatum]

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 165/278 (59%), Gaps = 27/278 (9%)

Query: 4   RGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDIT 63
           R   DRR +D+         + + +DE+ PVV+ FR + + ++ + D+YERLVK+ RD+T
Sbjct: 36  RHHEDRRNQDEK--------RDSGVDESLPVVKMFRAFQLELDDRYDRYERLVKLGRDVT 87

Query: 64  IESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAG 122
           IESKR+IFLLH ++R+ D  K+L EA  ++  L  +  + I  EL G+  Y Y+RAFS G
Sbjct: 88  IESKRIIFLLHRIIRNEDKDKILAEANRKICDLNTSALREIAMELRGQSYYLYLRAFSPG 147

Query: 123 LQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKL---------------- 166
           +QE++EA TF HY+K  HLI  D + + +     PE  ES                    
Sbjct: 148 VQEYVEAVTFFHYIKDGHLITLDDIHKALVFEEQPEEPESDTAAAEPTSAGENPPATFSL 207

Query: 167 -LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEA 225
            +TP +++LG+GDL+GELMR  I +V  G +  +     + +RD+Y A L  G +  ++ 
Sbjct: 208 EITPLDYMLGIGDLTGELMRKCINAVGQG-NLEEPFMLCSFLRDMYAAFLTFGNTAGRDM 266

Query: 226 SRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
           SRK+  L QSL+K+E   YT+KVRGSE+P H++A + N
Sbjct: 267 SRKVWTLCQSLRKVENACYTIKVRGSEIPSHMLADMFN 304

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787621|gb|JAA59262.1| Putative translin-associated protein x [Rhipicephalus pulchellus]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 162/269 (60%), Gaps = 25/269 (9%)

Query: 7   RDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIES 66
           R+R+R+     N ++       DE+ PVV+ FR + + ++ + D+YERLVK+ RD+TIES
Sbjct: 35  RNRQRRSDEKRNSDV-------DESLPVVKMFRAFQVELDDRYDRYERLVKLGRDVTIES 87

Query: 67  KRVIFLLHTLLRSDTQK--VLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQ 124
           KR+IFLLH +++ DTQK  VL EA+ +L  L     + I  EL G+  Y Y+RAFS G+Q
Sbjct: 88  KRIIFLLHRIMK-DTQKDKVLAEADQKLCELSMYALREIAMELRGQSYYLYLRAFSPGIQ 146

Query: 125 EFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVK--------------LLTPT 170
           E++EA TF HY+K  HL+  D + + +  L  PE  ES++                +TP 
Sbjct: 147 EYVEALTFFHYIKDGHLVTLDEIHKNLVYLEQPEEAESEMADETASQTPPGKFSLEITPL 206

Query: 171 EFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLA 230
           +++LG+ DL+GELMR  I +V  G D  +       +RD+Y   L  G +  +E SRK+ 
Sbjct: 207 DYMLGIADLTGELMRKCINAVGQG-DLEEPFVLCRFLRDMYTGFLGFGNTAGREISRKVW 265

Query: 231 VLKQSLQKMERTVYTVKVRGSEMPRHVIA 259
            L QS++K+E   Y +KVRGSE+P HV+A
Sbjct: 266 TLFQSVRKVENACYNIKVRGSELPNHVLA 294

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417463|ref|XP_003491434.1| PREDICTED: translin-associated protein X-like [Bombus impatiens]

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 153/259 (59%), Gaps = 35/259 (13%)

Query: 15  SSTNVNIGGKK----NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVI 70
            +  +NI  K+    ++ D++S ++Q+FR YA  ++ K D++ER+VK  RDITIESKR+I
Sbjct: 14  CTKKINIDDKRKEIVDITDQSSEILQQFRAYATELDNKHDRFERIVKFGRDITIESKRII 73

Query: 71  FLLHTLLRSDTQK-VLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEA 129
           FLLHT+ +   Q+ VL EA+ RL  + ++ FKSI  EL G+D Y Y++A+  GL+E+IEA
Sbjct: 74  FLLHTIDKKGKQESVLREADMRLQKVARSLFKSIAHELEGQDPYLYLKAYRNGLEEYIEA 133

Query: 130 YTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIG 189
            TF  YLK                              +P E++LG+ DL+GELMR  I 
Sbjct: 134 VTFYQYLK-----------------------------FSPYEYILGIADLTGELMRLCIN 164

Query: 190 SVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVR 249
           ++A G D   C    N VRD+Y   L    +  +  +RKL  L+Q+L K+E   YTVK+R
Sbjct: 165 NLATG-DRASCYQTCNFVRDMYTCFLGCTNASNRLVNRKLCTLEQNLHKIENVCYTVKIR 223

Query: 250 GSEMPRHVIAHVVNESEHD 268
           GSE+P+H++  +VNE   D
Sbjct: 224 GSEIPKHILVDLVNEEYAD 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125773329|ref|XP_001357923.1| GA18631 [Drosophila pseudoobscura pseudoobscura] gi|54637657|gb|EAL27059.1| GA18631 [Drosophila pseudoobscura pseudoobscura]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 157/257 (61%), Gaps = 33/257 (12%)

Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE++P+VQ FR Y+I + TK D++ER+VK+SRDITIESKR+IF LH++   + + +K+L
Sbjct: 23  VDEDNPIVQAFRNYSIELTTKHDRHERIVKLSRDITIESKRIIFTLHSIDSRKQNKEKIL 82

Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNH----- 140
           EEA+ RL  L++ +F++I  EL  +D+YQ+  A+SAGLQEFIEAYT++ YL  +      
Sbjct: 83  EEAQKRLQKLIEVNFRAIALELRDQDVYQFRNAYSAGLQEFIEAYTYMEYLSRDDNDETP 142

Query: 141 --LIGWDHVEQKM----------------------EELCGPEAEESQVK-LLTPTEFVLG 175
             +  W  ++  M                      EE CG E +  + +  + PTE+VLG
Sbjct: 143 KSVSDWQALQSVMQYVEDPSKAKDEGASVEEMDVDEEKCGEEGQAKKFQFFIDPTEYVLG 202

Query: 176 VGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQS 235
           + DL+GELMR  I S+ +G D+  C+   +T++  Y   ++  + R +E  RK+  ++QS
Sbjct: 203 LSDLTGELMRRCINSLGSG-DTDTCMETCSTLQMFYTGYISLNLQRARELWRKITTMRQS 261

Query: 236 LQKMERTVYTVKVRGSE 252
           + K E   Y VKVRG E
Sbjct: 262 VLKAENVCYNVKVRGGE 278

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
FB|FBgn0038327	298	Trax "Translin associated fact	0.399	0.365	0.531	2.9e-44
UNIPROTKB|J9P139	290	TSNAX "Uncharacterized protein	0.967	0.910	0.391	5e-44
UNIPROTKB|Q99598	290	TSNAX "Translin-associated pro	0.981	0.924	0.394	1.7e-43
UNIPROTKB|F1RGU1	290	TSNAX "Uncharacterized protein	0.967	0.910	0.388	4.5e-43
RGD|621574	290	Tsnax "translin-associated fac	0.923	0.868	0.389	7.3e-43
MGI|MGI:1855672	290	Tsnax "translin-associated fac	0.923	0.868	0.400	9.3e-43
UNIPROTKB|G3MY03	290	TSNAX "Uncharacterized protein	0.967	0.910	0.388	5.2e-42
ZFIN|ZDB-GENE-050913-80	281	tsnax "translin-associated fac	0.860	0.836	0.400	1.6e-40
UNIPROTKB|E1BQ94	260	LOC100859597 "Uncharacterized	0.842	0.884	0.412	2e-40
TAIR|locus:2044264	287	AT2G03780 "AT2G03780" [Arabido	0.824	0.783	0.337	4.9e-30

FB|FBgn0038327 Trax "Translin associated factor X" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 59/111 (53%), Positives = 87/111 (78%)

Query:    28 IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
             +DE+SP+VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVL
Sbjct:    24 LDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83

Query:    86 EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL 136
             EEA  RLN L+  +F+++  EL  +D+YQ+  ++S GLQEFIEAYT++ YL
Sbjct:    84 EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYMEYL 134

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 112/286 (39%), Positives = 173/286 (60%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEIKLDGVRQKILQ-VAQELSGEDMHQFHRAITTGL 124

Query:   124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM---EELCGPE----AEESQVKL-------LTP 169
             QE++EA +F H++K+  LI  D + +++    E CG E    + + Q K        +TP
Sbjct:   125 QEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEECGKENKTPSSDGQDKQFGTWRLKITP 184

Query:   170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
              +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G +   E S+KL
Sbjct:   185 VDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query:   230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN-ESEH-DCEKGL 273
               LKQSL K+E   Y +KVRGSE+P+H++A V + ++E  D E+G+
Sbjct:   244 YTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGI 289

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 116/294 (39%), Positives = 178/294 (60%)

Query:     1 MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
             MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct:     1 MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query:    57 KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
             K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct:    58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116

Query:   116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM---EELCGPE-------AEESQV- 164
              RA + GLQE++EA +F H++K+  LI  D + +++    E  G E       A++ Q  
Sbjct:   117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176

Query:   165 --KL-LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
               +L +TP +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G + 
Sbjct:   177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTG 235

Query:   222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN-ESEH-DCEKGL 273
               E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A V + ++E  D E+G+
Sbjct:   236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGI 289

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 111/286 (38%), Positives = 172/286 (60%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--LNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEIKLDGVRQKILQ-VAQELSGEDMHQFHRAITTGL 124

Query:   124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM---------EELCGP-EAEESQVKL----LTP 169
             QE++EA +F H++K+  LI  D + +++         E    P +A++ Q       LTP
Sbjct:   125 QEYVEAVSFQHFIKTRSLISMDEINKQLIFSTEENGKENKTPPSDAQDKQCGTWSLKLTP 184

Query:   170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
              +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G +   E S+KL
Sbjct:   185 VDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query:   230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN-ESEH-DCEKGL 273
               LKQSL K+E   Y +KVRGSE+P+H++A V + ++E  D E+G+
Sbjct:   244 YTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGI 289

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 106/272 (38%), Positives = 163/272 (59%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK      +SPV+  F+ +   ++T+ DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--ASSSSPVMLAFKSFQQELDTRHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
             ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKMLQ-VAQELSGEDMHQFHRAVTTGL 124

Query:   124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM--------EELCGPEAEESQVKL------LTP 169
             QE++EA +F H++++  LI  + + +++        +E   P A+    +L      +TP
Sbjct:   125 QEYVEAVSFQHFIRTRSLISMEEINRQLTFTTDDSGKESKAPPADGQDKQLVTWRLKITP 184

Query:   170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
              +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G +   E S+KL
Sbjct:   185 VDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query:   230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHV 261
               LKQSL K+E   Y +KVRGSE+P+H++A V
Sbjct:   244 YTLKQSLSKVENACYALKVRGSEIPKHMLADV 275

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 109/272 (40%), Positives = 165/272 (60%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   +  +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDTFPHNQRREGKDASL--SSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
             ESKR IFLLH +  + D +++L E+ES+L+ + Q   + +  EL GED++Q+ RA + GL
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESESKLDGVRQKILQ-VAQELSGEDMHQFHRAVTTGL 124

Query:   124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM---------EELCGP-EAEESQV---KL-LTP 169
             QE++EA +F H++K+  LI  + + +++         E    P E +E Q+   +L LTP
Sbjct:   125 QEYVEAVSFQHFIKTRSLISMEEINKQLTFTAEDSGKESKTPPAEGQEKQLVTWRLKLTP 184

Query:   170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
              +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G +   E S+KL
Sbjct:   185 VDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query:   230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHV 261
               LKQSL K+E   Y +KVRGSE+P+H++A V
Sbjct:   244 YTLKQSLAKVENACYALKVRGSEIPKHMLADV 275

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 111/286 (38%), Positives = 173/286 (60%)

Query:     5 GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITI 64
             GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLVK+SRDIT+
Sbjct:     9 GFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITV 65

Query:    65 ESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGL 123
             ESKR IFLLH +  + D +++L E+E +L+ + Q   + +  EL  ED++Q+ RA + GL
Sbjct:    66 ESKRTIFLLHRITSAPDMEEILTESEVKLDGVRQKILQ-VAQELSVEDMHQFHRAITTGL 124

Query:   124 QEFIEAYTFLHYLKSNHLIGWDHVEQKM---EELCGPE-------AEESQV---KL-LTP 169
             QE++EA +F H++K+  LI  D + +++    E  G E       A++ Q    +L +TP
Sbjct:   125 QEYVEAVSFQHFIKTRSLISMDEINKQLIFSTEDNGKENKTPSSDAQDKQCGTWRLRITP 184

Query:   170 TEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKL 229
              +++LGV DL+GELMR  I SV  G   T     +  +R +Y      G +   E S+KL
Sbjct:   185 VDYLLGVADLTGELMRMCINSVGNGDIDTP-FEVSQFLRQVYDGFSFIGNTGPYEVSKKL 243

Query:   230 AVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN-ESEH-DCEKGL 273
               LKQSL K+E   Y +KVRGSE+P+H++A V + ++E  D E+G+
Sbjct:   244 YTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGI 289

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 99/247 (40%), Positives = 151/247 (61%)

Query:    25 KNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDTQK 83
             ++ ++ NS V+  F+ +   ++T+ DKYERLVKISRD+TIESKR IFLLH +    D ++
Sbjct:    22 EDCMNPNSVVISAFKVFQQELDTRYDKYERLVKISRDVTIESKRTIFLLHRVASVPDVEE 81

Query:    84 VLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIG 143
             +L EAE +L+ + Q     I  EL GEDL+Q+ RAF+ G+QE++EA +F H+++   LI 
Sbjct:    82 ILNEAEVKLDGVRQK-IGQIAEELRGEDLHQFHRAFTPGIQEYVEAVSFHHFIRHRSLIS 140

Query:   144 WDHVEQKM------EELCGPEAEESQVKL---LTPTEFVLGVGDLSGELMRYAIGSVAAG 194
              + +  ++       +  G     S   L   +TPT+++LGV DL+GELMR  I SV  G
Sbjct:   141 LEEINARLVFIRDNNKAVGEGTFSSPCVLTFQITPTDYLLGVADLTGELMRMCISSVGNG 200

Query:   195 SDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP 254
                T     +  +R ++      G +   E S+KL  L+QSL K+E   YT++VRGSE+P
Sbjct:   201 DMDTP-FQLSGFLRQIHDGFSLIGNTGPYEVSKKLHALRQSLGKVEDACYTLRVRGSEIP 259

Query:   255 RHVIAHV 261
             +H++A V
Sbjct:   260 KHMLADV 266

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BQ94 LOC100859597 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 103/250 (41%), Positives = 152/250 (60%)

Query:    41 YAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDT-QKVLEEAESRLNILMQTH 99
             + + ++T+ DKYERLVK+SRDITIESKR IFLLH  + +   ++VL E+E +L+ + +  
Sbjct:    13 FQLELDTRHDKYERLVKLSRDITIESKRTIFLLHRYISAPNGEEVLNESEVKLDAVRRK- 71

Query:   100 FKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEA 159
              K +  EL+GED+YQ+ RA S GLQE+IEA +F +++K+  LI  + + +++      + 
Sbjct:    72 IKQVAQELIGEDMYQFHRAISPGLQEYIEAVSFQYFIKTRSLISIEEINKQLV-FTAEDR 130

Query:   160 EE-------SQVKL-------LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATN 205
             EE       SQ K        +TP +++LGV DL+GELMR  I SV  G   T     + 
Sbjct:   131 EETTNMTSTSQDKQPHTWSLKVTPVDYLLGVADLTGELMRLCISSVGNGDIDTP-FELSQ 189

Query:   206 TVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNES 265
              +R +Y      G +   E S+KL  LKQSL K+E   YT+KVRGSE+P+H++A V +  
Sbjct:   190 FLRQIYDGFTFIGNTGPYEVSKKLYTLKQSLAKVENACYTLKVRGSEIPKHMLADVFSTK 249

Query:   266 EH--DCEKGL 273
                 D E+GL
Sbjct:   250 TELIDQEEGL 259

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2044264 AT2G03780 "AT2G03780" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 78/231 (33%), Positives = 126/231 (54%)

Query:    24 KKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQK 83
             K   +   S +   F  YA  +N   +K ER+VK+SRDIT+ SK+VIF +H L + + ++
Sbjct:    40 KARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSRDITMNSKKVIFQVHRLSKDNKEE 99

Query:    84 VLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIG 143
             VLE+A   L  +   HF  +  EL G D ++  RA+S G+QE++EA TF  +  S  L  
Sbjct:   100 VLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYSPGVQEYVEAATFYKFCLSGTLCT 159

Query:   144 WDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINA 203
              D +   +  L  P  E  Q+ +L   +++LG+ DL+GELMR AIG ++ G +       
Sbjct:   160 LDEINTTLVPLSDPSLEPLQINIL---DYILGLADLTGELMRMAIGRISDG-EIEFAQRI 215

Query:   204 TNTVRDLY--VAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSE 252
                VR ++  + ++   +    +   K+ V+ QS+ K+E   ++V VRG E
Sbjct:   216 CQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIENACFSVHVRGLE 266

GO:0003677 "DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RC21	TSNAX_PONAB	No assigned EC number	0.3829	0.9450	0.8896	yes	N/A
Q9JHB5	TSNAX_RAT	No assigned EC number	0.3868	0.9304	0.8758	yes	N/A
Q9QZE7	TSNAX_MOUSE	No assigned EC number	0.3941	0.9304	0.8758	yes	N/A
Q99598	TSNAX_HUMAN	No assigned EC number	0.3829	0.9450	0.8896	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	273
pfam01997	187	pfam01997, Translin, Translin family	1e-47
COG2178	204	COG2178, COG2178, Predicted RNA-binding protein of	5e-14
PRK14562	204	PRK14562, PRK14562, haloacid dehalogenase superfam	6e-09

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score =  156 bits (397), Expect = 1e-47
 Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 16/203 (7%)

Query: 49  QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELV 108
            D  E L+KISRDIT  SK+ IF LH     + +++L+EA+  L          +K  L 
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELL--------AKLKELLK 52

Query: 109 GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLT 168
           G   Y+Y  A+S  LQE++EA TF HYL++  L   + + + +               +T
Sbjct: 53  GHPYYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF------HVT 106

Query: 169 PTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRK 228
           P +++LG+ DL+GELMRYA+ SV  G D    +     + DLY A       +     +K
Sbjct: 107 PEDYLLGLFDLTGELMRYALNSVTLG-DYERPLEILEFMEDLY-AGFRLLNLKNDGLRKK 164

Query: 229 LAVLKQSLQKMERTVYTVKVRGS 251
           L VL+ SL+K+E  VY + VRG 
Sbjct: 165 LDVLRYSLEKVEEVVYDLSVRGL 187

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 47  TKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAE 106
            K    E  +K+SR+I   S   IFLLH       +   EEAE +L        + +K  
Sbjct: 14  EKDKAREEALKLSREIVRLSGEAIFLLH-------RGDFEEAEKKLKK-ASEAVEKLKRL 65

Query: 107 LVG-EDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVK 165
           L G  +LY +    +  LQE++EA      LK                   P  EE  V 
Sbjct: 66  LAGFPELY-FAGFVTTALQEYVEATLLYSILKDG---------------RLPSPEELGV- 108

Query: 166 LLTPTEFVLGVGDLSGELMRYAI 188
              P  ++LG+ D  GEL R+ +
Sbjct: 109 --PPIAYILGLADAVGELRRHVL 129

Length = 204

>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 26/140 (18%)

Query: 48  KQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAEL 107
           K +  E  +K+SR+I   S   I  +H   R D     EEAE  L    +   K +K  L
Sbjct: 16  KDEAREEALKLSREIVRLSGDAIRAIH---RGD----FEEAEKLLKE-AEELVKELKELL 67

Query: 108 VGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLL 167
                  Y       LQE++EA      L  N +               P  EE  V   
Sbjct: 68  KDHPELYYAGYVGTALQEYVEALLVYSLLFENKI---------------PSPEELGVP-- 110

Query: 168 TPTEFVLGVGDLSGELMRYA 187
               ++LG+ D  GEL R+ 
Sbjct: 111 -EAAYLLGLADAIGELRRHI 129

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	100.0
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	100.0
KOG3066|consensus	271		100.0
KOG3067|consensus	226		100.0
COG2178	204	Predicted RNA-binding protein of the translin fami	100.0

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=100.00  E-value=1.8e-61  Score=425.11  Aligned_cols=196  Identities=40%  Similarity=0.643  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHH
Q psy10794         49 QDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIE  128 (273)
Q Consensus        49 ~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvE  128 (273)
                      ||+||+|+|+|||||++||++||+|||++.+++.+++++|++.++++++ .+++|+ +++++|+|+|+++|++|+|||||
T Consensus         1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE   78 (200)
T PF01997_consen    1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE   78 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999988888999999999999998 999999 99999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHH
Q psy10794        129 AYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVR  208 (273)
Q Consensus       129 A~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~  208 (273)
                      |++|++||++++|||++|+++.|++...+    ...++|+++|||+||+||||||||||||+++.| |++.|+++++||+
T Consensus        79 a~~f~~~l~~~~L~t~~ev~~~l~~~~~~----~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~g-d~~~~~~i~~f~~  153 (200)
T PF01997_consen   79 AISFYHYLETGRLLTPEEVGEILGFSEDD----EDRFHVTPEDYLLGLADLTGELMRYAINSVTKG-DYERPEKILEFMR  153 (200)
T ss_dssp             HHHHHHHHHHSSS--HHHHHHHCTCBSST----SCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT--SSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHhhcccc----ccceecCHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHH
Confidence            99999999999999999999999988755    366799999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHhhcCCC----CCcchhhhHHHHHHHHHHHHhhhHhHHHhCC
Q psy10794        209 DLYVAMLASGVS----RVKEASRKLAVLKQSLQKMERTVYTVKVRGS  251 (273)
Q Consensus       209 ~ly~~f~~L~lk----~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgl  251 (273)
                      +||++|..||+|    +|++||||+|++||+|+|+|++||+++|||+
T Consensus       154 ~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs  200 (200)
T PF01997_consen  154 ELYSGFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS  200 (200)
T ss_dssp             HHHHHHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence            999999999994    2899999999999999999999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=100.00  E-value=7.4e-56  Score=390.62  Aligned_cols=193  Identities=21%  Similarity=0.231  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10794         34 VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLY  113 (273)
Q Consensus        34 ~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~  113 (273)
                      +.++|++++++||++|++||+|+++|||||+.||++||++||.+.       ++|.+.+.++.+ .+.+|++.++++|+|
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~-------~~a~~~l~~a~~-~~~~l~~~~~~~~~~   73 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDF-------EEAEKLLKEAEE-LVKELKELLKDHPEL   73 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHH-HHHHHHHHhccCchh
Confidence            578999999999999999999999999999999999999999764       788888999999 899999999999999


Q ss_pred             hHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhc
Q psy10794        114 QYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAA  193 (273)
Q Consensus       114 ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~  193 (273)
                      +|+++|++|+||||||++|++||++++|||++++                  +|+++|||+||+|+||||||||+|+++.
T Consensus        74 ~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~eel------------------~v~~~dYLlGl~Dl~GEL~R~al~~l~~  135 (204)
T PRK14562         74 YYAGYVGTALQEYVEALLVYSLLFENKIPSPEEL------------------GVPEAAYLLGLADAIGELRRHILELLRK  135 (204)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHHc------------------CCCHHHHHhHHHHHHhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998                  7999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHhhcCCCCCc---chhhhHHHHHHHHHHH-HhhhHhHHHhCCCCC
Q psy10794        194 GSDSTDCINATNTVRDLYVAMLASGVSRVK---EASRKLAVLKQSLQKM-ERTVYTVKVRGSEMP  254 (273)
Q Consensus       194 G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~---~LRkK~D~lk~~lkKv-E~v~Ydl~iRgle~~  254 (273)
                      | |++.|+++++||++||++|+.||+| ++   +||||+|++||+|+|+ ++++|.+..++++..
T Consensus       136 g-d~~~~~~i~~fm~~ly~~~~~l~~~-~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~~~  198 (204)
T PRK14562        136 G-EIEEAEKLLEIMEEIYEFLMTLDYP-DAITPGLRRKQDVARSLLERTRGDLTNAILNRKLEEA  198 (204)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHhcCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 9999999999999999999999998 55   9999999999999998 999999998877643

>KOG3066|consensus

Probab=100.00  E-value=1.9e-55  Score=383.12  Aligned_cols=253  Identities=31%  Similarity=0.369  Sum_probs=225.1

Q ss_pred             cccccccccCCCCCCcCCCCcc-c-ccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CC
Q psy10794          4 RGFRDRRRKDQSSTNVNIGGKK-N-LIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SD   80 (273)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-~~   80 (273)
                      +++++|-++   +-+.|+.+.+ + ++.++++++..|.+|+++|++.||+||||+|+|||||+.||++||+|||..+ ++
T Consensus         6 sSafqRvaf---mlmaPklkpqkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~   82 (271)
T KOG3066|consen    6 SSAFQRVAF---MLMAPKLKPQKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGF   82 (271)
T ss_pred             cchHHHHHH---HHhCcccCcccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCC
Confidence            344444432   3355555333 3 7888999999999999999999999999999999999999999999999987 78


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCccc
Q psy10794         81 TQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAE  160 (273)
Q Consensus        81 ~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~  160 (273)
                      +++++.++...|..++.+.+..|+.+|.|.++|+|++++++|+||||||++|++|+.+|+|.+.+|+...+-....    
T Consensus        83 ~e~~l~~~~~~le~vr~k~f~~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~----  158 (271)
T KOG3066|consen   83 PEPKLFDRTSILEKVRHKEFESLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDS----  158 (271)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCC----
Confidence            8999999999999999988999999999999999999999999999999999999999999999999877643321    


Q ss_pred             ccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCC--CcchhhhHHHHHHHHHH
Q psy10794        161 ESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR--VKEASRKLAVLKQSLQK  238 (273)
Q Consensus       161 ~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~--n~~LRkK~D~lk~~lkK  238 (273)
                       +....|++-||++|+|||||||||+||+++..| +++.|.++++|++.||.+|+....+.  ..++.+|+.||++||-|
T Consensus       159 -~~rl~in~iDYvLGvaDlTGElMRm~I~~~s~g-~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~K  236 (271)
T KOG3066|consen  159 -SFRLSINFIDYVLGVADLTGELMRMLITNGSKG-SIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISK  236 (271)
T ss_pred             -ccceeeeHHHHHHHHhhhHHHHHHHHHhcCcCc-chhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHH
Confidence             134489999999999999999999999999999 99999999999999999999987654  56899999999999999


Q ss_pred             HHhhhHhHHHhCCCCChhhhhhhhhcc
Q psy10794        239 MERTVYTVKVRGSEMPRHVIAHVVNES  265 (273)
Q Consensus       239 vE~v~Ydl~iRgle~~~~~~~~~~~~~  265 (273)
                      ||++||.+.+||+|.++.++++.++..
T Consensus       237 vEnaCys~~vRg~e~~~l~l~~~~~~~  263 (271)
T KOG3066|consen  237 VENACYSKIVRGAEKRYLNLEVDTATP  263 (271)
T ss_pred             HHhHHHHHHhcccccccccccccccCC
Confidence            999999999999999999998876554

>KOG3067|consensus

Probab=100.00  E-value=4.5e-50  Score=342.66  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10794         35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDL  112 (273)
Q Consensus        35 ~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~--~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~  112 (273)
                      .++|.+++..+|+.++.||+|.+.++.|+..+|.+...|+-+|.  +..++.|..|++.+..|+. .+..|++..+..+|
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy   83 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence            48999999999999999999999999999999999999998887  4689999999999999999 99999999999999


Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhh
Q psy10794        113 YQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVA  192 (273)
Q Consensus       113 ~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~  192 (273)
                      |+|++.|...+|..|+..+|++||+++.|+|++++.++||+++..    +..||++++|||.|++-|++||.|+++|+||
T Consensus        84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eilgl~p~~----s~~FhLdvedyl~gvl~L~seLsR~svNsVt  159 (226)
T KOG3067|consen   84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEILGLEPDR----SEGFHLDVEDYLSGVLFLASELSRQSVNSVT  159 (226)
T ss_pred             EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhcCCccc----cccceeeHHHHHHHHHHHHHHHHHhhhcccc
Confidence            999999999999999999999999999999999999999998543    4668999999999999999999999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCChhh
Q psy10794        193 AGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHV  257 (273)
Q Consensus       193 ~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~  257 (273)
                      .| ||++|..+..|+.+++++|++||+| ||+||||||+|||+|+|+|+|+||++|||+..+|.+
T Consensus       160 aG-dY~~Pl~v~~fi~dlhs~FrlLnLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~~epav  222 (226)
T KOG3067|consen  160 AG-DYHRPLHVSNFINDLHSGFRLLNLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLVDEPAV  222 (226)
T ss_pred             cc-CcCCchHHHHHHhhhcccceeeecc-chhhhccccchhhhHHhhhhhheeeeeecccCCccc
Confidence            99 9999999999999999999999998 999999999999999999999999999999866543

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-43  Score=305.83  Aligned_cols=192  Identities=24%  Similarity=0.308  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10794         35 VQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQ  114 (273)
Q Consensus        35 ~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~r  114 (273)
                      .+.+.++++.|+++++.||+++++||+|+++|+.+|+++||++.       ++|...++++.+ .+++|+..+.++|..+
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~-------eeA~~~l~~a~~-~v~~Lk~~l~~~pel~   73 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDF-------EEAEKKLKKASE-AVEKLKRLLAGFPELY   73 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHH-HHHHHHHHHhhhHHHH
Confidence            46789999999999999999999999999999999999999985       899999999999 9999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcC
Q psy10794        115 YIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAG  194 (273)
Q Consensus       115 y~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G  194 (273)
                      |+|+++.|+||||||.+|+.|++++.+|+++|+                  +|++.+||+||||++|||||+++..+..|
T Consensus        74 ~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL------------------~V~~~~YilGl~D~vGELrR~~le~l~~~  135 (204)
T COG2178          74 FAGFVTTALQEYVEATLLYSILKDGRLPSPEEL------------------GVPPIAYILGLADAVGELRRHVLELLRKG  135 (204)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999                  79999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHhhcCCCC--CcchhhhHHHHHHHHHHH-HhhhHhHHHhCCCC
Q psy10794        195 SDSTDCINATNTVRDLYVAMLASGVSR--VKEASRKLAVLKQSLQKM-ERTVYTVKVRGSEM  253 (273)
Q Consensus       195 ~d~~~~~~i~~fm~~ly~~f~~L~lk~--n~~LRkK~D~lk~~lkKv-E~v~Ydl~iRgle~  253 (273)
                       +++.+++.++||++||..++.|++|+  .++||||+|++|+.++|. +++++...-|.++.
T Consensus       136 -~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~~a~~~r~le~  196 (204)
T COG2178         136 -SFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLFRAKQNRQLEE  196 (204)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999997  669999999999999995 88888888776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
3pja_J	290	Crystal Structure Of Human C3po Complex Length = 29		4e-46
3axj_B	298	High Resolution Crystal Structure Of C3po Length =		1e-45
3riu_C	269	Crystal Structure Of Drosophila Hexameric C3po Form		1e-42
3pja_A	228	Crystal Structure Of Human C3po Complex Length = 22		8e-05
1j1j_A	240	Crystal Structure Of Human Translin Length = 240		9e-05
1key_A	235	Crystal Structure Of Mouse TestisBRAIN RNA-Binding		1e-04
2qrx_A	235	Crystal Structure Of Drosophila Melanogaster Transl		3e-04
2qva_A	247	Crystal Structure Of Drosophila Melanogaster Transl		3e-04
4dg7_A	255	Low Resolution Structure Of Drosophila Translin Len		3e-04
3riu_A	218	Crystal Structure Of Drosophila Hexameric C3po Form		6e-04
3axj_A	249	High Resolution Crystal Structure Of C3po Length =		8e-04

>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290

Iteration: 1
 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 167/282 (59%), Gaps = 24/282 (8%)
Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR +R+ D    N    GK   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFR-KRKHDNFPHNQRREGKD--VNSSSPVMLAFKSFQQELDARHDKYERLV 57
Query: 57  KISRDITIESKRVIFLLHTLLRS-DTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH +  + D + +L E+E +L+ + Q  F+ +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQ-VAQELSGEDMHQF 116
Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM----------EELCGPEAEESQVK 165
            RA + GLQE++EA +F H++K+  LI  D + +++           +    +A++ Q  
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176
Query: 166 L----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
                +TP +++LGV DL+GELMR  I SV  G D       +  +R +Y      G + 
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235
Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVN 263
             E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A V +
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFS 277

>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 154/258 (59%), Gaps = 31/258 (12%)
Query: 28  IDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVL 85
           +DE+SP+VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVL
Sbjct: 24  LDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVL 83
Query: 86  EEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL--------- 136
           EEA  RLN L+  +F+++  EL  +D+YQ+  ++S GLQEFI+AYT+  YL         
Sbjct: 84  EEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYXEYLCHEDAEGEN 143
Query: 137 KSNHLIGWDHVE---QKMEELCGPEAEES---------QVK-------LLTPTEFVLGVG 177
           ++  +  W  ++   Q +EE   P+ E +         QV+        + PTE++LG+ 
Sbjct: 144 ETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLS 203
Query: 178 DLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQ 237
           DL+GEL R  I S+ +G D+  C++    ++  Y   ++    R +E  RK+   KQS+ 
Sbjct: 204 DLTGELXRRCINSLGSG-DTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTXKQSVL 262
Query: 238 KMERTVYTVKVRGSEMPR 255
           K E   Y VKVRG E  +
Sbjct: 263 KAENVCYNVKVRGGEAAK 280

>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269

Iteration: 1
 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 31/252 (12%)
Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLEEAESR 91
           +VQ+FR Y+  +  K D++ER+VK+SRDITIESKR+IFLLH++   + + +KVLEEA  R
Sbjct: 1   IVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQR 60
Query: 92  LNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYL---------KSNHLI 142
           LN L+  +F+++  EL  +D+YQ+  ++S GLQEFIEAYT+  YL         ++  + 
Sbjct: 61  LNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEYLCHEDAEGENETKSVS 120
Query: 143 GWDHVE---QKMEELCGPEAEES---------QVK-------LLTPTEFVLGVGDLSGEL 183
            W  ++   Q +EE   P+ E +         QV+        + PTE++LG+ DL+GEL
Sbjct: 121 DWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGEL 180
Query: 184 MRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTV 243
            R  I S+ +G D+  C++    ++  Y   ++    R +E  RK+   KQS+ K E   
Sbjct: 181 XRRCINSLGSG-DTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTXKQSVLKAENVC 239
Query: 244 YTVKVRGSEMPR 255
           Y VKVRG E  +
Sbjct: 240 YNVKVRGGEAAK 251

>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 96  MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
           ++TH  S+K +   E  Y++   +   LQ  +    F+ YL++  L+      + + E+ 
Sbjct: 68  VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 123
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
           G E +  +   L   +++ GV  L+ EL R ++ SV AG  S     +T      ++  L
Sbjct: 124 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 177
Query: 216 ASG--VSRVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
            SG  +  +K  S  ++   LK  ++K+E  VY + +RG
Sbjct: 178 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin Length = 240

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 96  MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
           ++TH  S+K +   E  Y++   +   LQ  +    F+ YL++  L+      + + E+ 
Sbjct: 80  VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 135
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
           G E +  +   L   +++ GV  L+ EL R ++ SV AG  S     +T      ++  L
Sbjct: 136 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 189
Query: 216 ASGVS--RVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
            SG     +K  S  ++   LK  ++K+E  VY + +RG
Sbjct: 190 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 228

>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein (Tb-Rbp) Length = 235

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 96  MQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELC 155
           ++TH  S+K +   E  Y++   +   LQ  +    F+ YL++  L+      + + E+ 
Sbjct: 75  VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLV----TREAVTEIL 130
Query: 156 GPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAML 215
           G E +  +   L   +++ GV  L+ EL R ++ SV AG  S     +T      ++  L
Sbjct: 131 GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHIST------FINEL 184
Query: 216 ASGVS--RVKEAS--RKLAVLKQSLQKMERTVYTVKVRG 250
            SG     +K  S  ++   LK  ++K+E  VY + +RG
Sbjct: 185 DSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 223

>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
           AELV     Y+Y   ++   Q  I     + YL++  L+      + + E+ G +  +S+
Sbjct: 77  AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 132
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
              L   +++LG+  L+ EL R+A  SV  G D    +N ++ + DL        +    
Sbjct: 133 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERSLNISHFIGDLNTGFRLLNLKN-D 190
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
              ++   LK  ++K+E  VY V +RG
Sbjct: 191 GLRKRFDALKYDVKKIEEVVYDVSIRG 217

>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
           AELV     Y+Y   ++   Q  I     + YL++  L+      + + E+ G +  +S+
Sbjct: 89  AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 144
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
              L   +++LG+  L+ EL R+A  SV  G D    +N ++ + DL        +    
Sbjct: 145 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERSLNISHFIGDLNTGFRLLNLKN-D 202
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
              ++   LK  ++K+E  VY V +RG
Sbjct: 203 GLRKRFDALKYDVKKIEEVVYDVSIRG 229

>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
           AELV     Y+Y   ++   Q  I     + YL++  L+      + + E+ G +  +S+
Sbjct: 97  AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEMLGLKISQSE 152
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
              L   +++LG+  L+ EL R+A  SV  G D    +N ++ + DL        +    
Sbjct: 153 GFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERPLNISHFIGDLNTGFRLLNLKN-D 210
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
              ++   LK  ++K+E  VY V +RG
Sbjct: 211 GLRKRFDALKYDVKKIEEVVYDVSIRG 237

>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
           AELV     Y+Y   ++   Q  I     + YL++  L+      + + E  G +  +S+
Sbjct: 78  AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEXLGLKISQSE 133
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
              L   +++LG+  L+ EL R+A  SV  G D    +N ++ + DL        +    
Sbjct: 134 GFHLDVEDYLLGILQLASELSRFATNSVTXG-DYERPLNISHFIGDLNTGFRLLNLKN-D 191
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
              ++   LK  ++K+E  VY V +RG
Sbjct: 192 GLRKRFDALKYDVKKIEEVVYDVSIRG 218

>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 105 AELV-GEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQ 163
           AELV     Y+Y   ++   Q  I     + YL++  L+      + + E  G +  +S+
Sbjct: 91  AELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV----TRETVAEXLGLKISQSE 146
Query: 164 VKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK 223
              L   +++LG+  L+ EL R+A  SV  G D    +N ++ + DL        +    
Sbjct: 147 GFHLDVEDYLLGILQLASELSRFATNSVTXG-DYERPLNISHFIGDLNTGFRLLNLKN-D 204
Query: 224 EASRKLAVLKQSLQKMERTVYTVKVRG 250
              ++   LK  ++K+E  VY V +RG
Sbjct: 205 GLRKRFDALKYDVKKIEEVVYDVSIRG 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
3qb5_K	290	Translin-associated protein X; alpha helical bundl	2e-57
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	3e-52
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	9e-51
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	1e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score =  184 bits (467), Expect = 2e-57
 Identities = 100/278 (35%), Positives = 156/278 (56%), Gaps = 24/278 (8%)

Query: 1   MSNR----GFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLV 56
           MSN+    GFR R+  +          +   ++ +SPV+  F+ +   ++ + DKYERLV
Sbjct: 1   MSNKEGSGGFRKRKHDNFPHNQ---RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLV 57

Query: 57  KISRDITIESKRVIFLLH-TLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQY 115
           K+SRDIT+ESKR IFLLH      D + +L E+E +L+ + +     +  EL GED++Q+
Sbjct: 58  KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV-RQKIFQVAQELSGEDMHQF 116

Query: 116 IRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKL--------- 166
            RA + GLQE++EA +F H++K+  LI  D + +++        +E++            
Sbjct: 117 HRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176

Query: 167 -----LTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSR 221
                +TP +++LGV DL+GELMR  I SV  G D       +  +R +Y      G + 
Sbjct: 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNTG 235

Query: 222 VKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIA 259
             E S+KL  LKQSL K+E   Y +KVRGSE+P+H++A
Sbjct: 236 PYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLA 273

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score =  171 bits (434), Expect = 3e-52
 Identities = 97/287 (33%), Positives = 152/287 (52%), Gaps = 35/287 (12%)

Query: 1   MSNRGFRDRRRKDQSSTNVNIGGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISR 60
           M   G    R        +        +DE+SP+VQ+FR Y+  +  K D++ER+VK+SR
Sbjct: 1   MPKNGGAGHRNTAPRKRQI----PAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSR 56

Query: 61  DITIESKRVIFLLHTL--LRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRA 118
           DITIESKR+IFLLH++   + + +KVLEEA  RLN L+  +F+++  EL  +D+YQ+  +
Sbjct: 57  DITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSS 116

Query: 119 FSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKM--------------------------- 151
           +S GLQEFI+AYT++ YL      G +  +                              
Sbjct: 117 YSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGED 176

Query: 152 -EELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL 210
            + +   E+ +     + PTE++LG+ DL+GELMR  I S+ +G D+  C++    ++  
Sbjct: 177 VQAIAQVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSG-DTDTCLDTCKALQHF 235

Query: 211 YVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHV 257
           Y   ++    R +E  RK+  +KQS+ K E   Y VKVRG E  +  
Sbjct: 236 YSGYISLNCQRARELWRKITTMKQSVLKAENVCYNVKVRGGEAAKWG 282

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score =  166 bits (420), Expect = 9e-51
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 9/230 (3%)

Query: 29  DENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTL--LRSDTQKVLE 86
             N   +  F  Y   ++ +Q+  E +  + R+I   SK     L  +    S       
Sbjct: 15  MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACG 74

Query: 87  EAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDH 146
            A  ++  L    ++ +   +     Y+Y   ++   Q  I     + YL++  L+  + 
Sbjct: 75  LARKQVE-LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRET 133

Query: 147 VEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNT 206
           V     E+ G +  +S+   L   +++LG+  L+ EL R+A  SV  G D    +N ++ 
Sbjct: 134 V----AEMLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVTMG-DYERPLNISHF 188

Query: 207 VRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRH 256
           + DL          +     ++   LK  ++K+E  VY V +RG      
Sbjct: 189 IGDLN-TGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKEK 237

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score =  165 bits (419), Expect = 1e-50
 Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 11/238 (4%)

Query: 22  GGKKNLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLH----TLL 77
           G   +    +  V + F +    +  +QD  E + K+ + +   ++ ++ LL        
Sbjct: 3   GSHHHHHHGSMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAG 62

Query: 78  RSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLK 137
             D  K   +A       ++TH  S+K +   E  Y++   +   LQ  +    F+ YL+
Sbjct: 63  FQDIPKRCLKAREHFGT-VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLE 121

Query: 138 SNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDS 197
           +  L+  + V     E+ G E +  +   L   +++ GV  L+ EL R ++ SV AG D 
Sbjct: 122 TETLVTREAV----TEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAG-DY 176

Query: 198 TDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPR 255
           +  ++ +  + +L  +       +     ++   LK  ++K+E  VY + +RG     
Sbjct: 177 SRPLHISTFINELD-SGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKET 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 65/292 (22%)

Query: 6   FRDRRRKDQSSTNVNIGGKKNLID---EN-SPVVQEFRKYAIIMNTKQDKYERLVKISRD 61
            RD      +  +VN      +I+       P   E+RK           ++RL      
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKM----------FDRLSVFPPS 384

Query: 62  ITIESKRVIFLLHTLLRSDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSA 121
             I +  +  +   +++SD   V+ +       L++   K     +    +Y  ++    
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI--PSIYLELKVKLE 440

Query: 122 GLQE----FIEAYTFLHYLKSNHL------------IGWDHVEQKMEELCGPEAEESQVK 165
                    ++ Y       S+ L            IG  H++           E  +  
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKN---------IEHPERM 490

Query: 166 LLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDL--YVAMLASGVSRVK 223
            L    F+    D     +   I      +      +  NT++ L  Y   +        
Sbjct: 491 TLFRMVFL----DFR--FLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYI---CDNDP 539

Query: 224 EASRKLAVLKQSLQKMERTVYTVK----VRGSEMPRHVIAHVVNESEHDCEK 271
           +  R +  +   L K+E  +   K    +R + M       +  E+    ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	100.0
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	100.0
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	100.0

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=6.4e-76  Score=541.34  Aligned_cols=256  Identities=38%  Similarity=0.619  Sum_probs=212.8

Q ss_pred             ccccccccCCCCCCcCCCCccc--ccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCh
Q psy10794          5 GFRDRRRKDQSSTNVNIGGKKN--LIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-SDT   81 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-~~~   81 (273)
                      ++|-|+||   |+|+|+++++.  .+++++++.++|+.|+++||++||+||+|+|+|||||++||++||+|||+++ +++
T Consensus         7 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~   83 (290)
T 3qb5_K            7 SGGFRKRK---HDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDM   83 (290)
T ss_dssp             ---------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred             CCccccCC---CCCCccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            34444444   67788886654  7899999999999999999999999999999999999999999999999987 568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCccc-
Q psy10794         82 QKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAE-  160 (273)
Q Consensus        82 ~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~-  160 (273)
                      +++|++|.+.|.++++ ++++|+++++++++|+|+++|++++||||||++|++||++++|||++||++.|+++..++.+ 
T Consensus        84 ~~il~ea~~~L~~i~~-~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~  162 (290)
T 3qb5_K           84 EDILTESEIKLDGVRQ-KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKE  162 (290)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC------
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccc
Confidence            9999999999999999 99999999999999999999999999999999999999999999999999999987533210 


Q ss_pred             -------------ccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCc-chh
Q psy10794        161 -------------ESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVK-EAS  226 (273)
Q Consensus       161 -------------~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~-~LR  226 (273)
                                   ....++|+++|||+||+||||||||||||+|+.| |+++|++|++||++||++|++||+| |+ +||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~V~~eDYLlGL~DLtGELmR~ainsv~~G-d~~~~~~i~~fm~~Ly~gf~~L~~~-~~~~Lr  240 (290)
T 3qb5_K          163 NKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNG-DIDTPFEVSQFLRQVYDGFSFIGNT-GPYEVS  240 (290)
T ss_dssp             --------------CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHHHGGG-SCHHHH
T ss_pred             cccccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCC-CChhhh
Confidence                         0113799999999999999999999999999999 9999999999999999999999998 66 999


Q ss_pred             hhHHHHHHHHHHHHhhhHhHHHhCCCCChhhhhhhhhccc
Q psy10794        227 RKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHVVNESE  266 (273)
Q Consensus       227 kK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~~~~~~~~~~  266 (273)
                      ||+|+|||||+|||++||+|+|||+|.|++|++||++++.
T Consensus       241 KK~d~lk~svkKvE~v~Ydl~vRg~e~pk~~~~d~~~~~~  280 (290)
T 3qb5_K          241 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKT  280 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred             HHHHHHHHHHHHHHHHhhheeeecCCCCcccchhhhcCCC
Confidence            9999999999999999999999999999999999997753

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=100.00  E-value=5.6e-70  Score=503.35  Aligned_cols=250  Identities=39%  Similarity=0.657  Sum_probs=213.8

Q ss_pred             CCcccccccccCCCCCCcCCCCcc--cccCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Q psy10794          2 SNRGFRDRRRKDQSSTNVNIGGKK--NLIDENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR-   78 (273)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~-   78 (273)
                      +|||+|.|+||       |..+.+  +++++++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||+|+ 
T Consensus         3 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~   75 (298)
T 3axj_B            3 KNGGAGHRNTA-------PRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSR   75 (298)
T ss_dssp             ---------------------------CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred             CCCCCccccCC-------CCCCcccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            46677777755       333222  37899999999999999999999999999999999999999999999999997 


Q ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHhhhhhhHHHHHHHHHHHHHHhh---c------CCCCCHHHHH
Q psy10794         79 -SDTQKVLEEAESRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLK---S------NHLIGWDHVE  148 (273)
Q Consensus        79 -~~~~~~l~~A~~~l~~i~~~~~~~La~~l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~---~------~~Lit~eev~  148 (273)
                       .+.+++|++|.+.|.+++++++++|+.+++++++|+|++.|++++||||||++|++||+   +      ++|+|++||+
T Consensus        76 ~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~  155 (298)
T 3axj_B           76 KQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQ  155 (298)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHH
Confidence             77899999999999999875779999999999999999999999999999999999999   8      9999999999


Q ss_pred             HHHhhcCCCcc-------------------cccccCCCChhHHHhhHHhhHhHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q psy10794        149 QKMEELCGPEA-------------------EESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRD  209 (273)
Q Consensus       149 ~~l~~~~~~~~-------------------~~~~~~~v~~edYLlGL~DLtGELmR~ain~v~~G~d~~~~~~i~~fm~~  209 (273)
                      +.|+++..++.                   .....++|+++|||+||+||||||||||||+|+.| |+++|++|+.||++
T Consensus       156 ~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~G-d~~~~~~i~~fm~~  234 (298)
T 3axj_B          156 AVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSG-DTDTCLDTCKALQH  234 (298)
T ss_dssp             HHCEEECCCC--------------------CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhcc-chHhHHHHHHHHHH
Confidence            99998653100                   01125799999999999999999999999999999 99999999999999


Q ss_pred             HHHHHhhcCCCCC-cchhhhHHHHHHHHHHHHhhhHhHHHhCCCCChhhhhhh
Q psy10794        210 LYVAMLASGVSRV-KEASRKLAVLKQSLQKMERTVYTVKVRGSEMPRHVIAHV  261 (273)
Q Consensus       210 ly~~f~~L~lk~n-~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~~~~~~~  261 (273)
                      ||++|++||+| | ++||||+|+|||+|+|||+|||+++|||+|.| .|.+-+
T Consensus       235 Ly~gf~~Lnlk-n~~~LRKK~D~lk~svkKvE~v~Ydl~vRg~e~~-~~~~~~  285 (298)
T 3axj_B          235 FYSGYISLNCQ-RARELWRKITTMKQSVLKAENVCYNVKVRGGEAA-KWGATF  285 (298)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HTC---
T ss_pred             HHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHheecCCCcc-cccccc
Confidence            99999999998 6 99999999999999999999999999999987 554433

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=100.00  E-value=8e-68  Score=475.87  Aligned_cols=217  Identities=20%  Similarity=0.313  Sum_probs=205.4

Q ss_pred             CChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10794         31 NSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAE  106 (273)
Q Consensus        31 ~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~----~~~~~~l~~A~~~l~~i~~~~~~~La~~  106 (273)
                      .|++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++.    .+.+++|++|++.|.++++ .+++|+++
T Consensus        12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~   90 (240)
T 1j1j_A           12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK   90 (240)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            799999999999999999999999999999999999999999999983    4588999999999999999 99999999


Q ss_pred             hcCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHH
Q psy10794        107 LVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRY  186 (273)
Q Consensus       107 l~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~  186 (273)
                      ++++|+|+|++.|++++||||||++|++||++++|+|++|+++.|+++.+.    ...++|+++|||+||+|||||||||
T Consensus        91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~----~~~f~v~~edYLlGL~DltGEL~R~  166 (240)
T 1j1j_A           91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDR----EKGFHLDVEDYLSGVLILASELSRL  166 (240)
T ss_dssp             SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSS----SSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCccc----cccCcCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986532    3568999999999999999999999


Q ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCC
Q psy10794        187 AIGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMP  254 (273)
Q Consensus       187 ain~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~  254 (273)
                      |||+|+.| |++.|++|++||++||++|++||+| |++||||+|++||+|+|||++||+++|||+++.
T Consensus       167 avn~v~~G-d~~~~~~i~~fm~~Ly~~f~~Lnl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~~~  232 (240)
T 1j1j_A          167 SVNSVTAG-DYSRPLHISTFINELDSGFRLLNLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKE  232 (240)
T ss_dssp             HHHHHHTT-CSSHHHHHHHHHHHHHHHHTTCCCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHhcC-ChHhHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            99999999 9999999999999999999999998 899999999999999999999999999999754

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=100.00  E-value=1.6e-66  Score=469.51  Aligned_cols=219  Identities=21%  Similarity=0.314  Sum_probs=207.6

Q ss_pred             CCChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10794         30 ENSPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR--SDTQKVLEEAESRLNILMQTHFKSIKAEL  107 (273)
Q Consensus        30 ~~~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~--~~~~~~l~~A~~~l~~i~~~~~~~La~~l  107 (273)
                      ++|++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||+++  .+.++++++|.+.|.++++ .+++|++++
T Consensus        16 ~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l   94 (249)
T 3axj_A           16 SNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELV   94 (249)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            3478899999999999999999999999999999999999999999986  4578899999999999999 999999999


Q ss_pred             cCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHH
Q psy10794        108 VGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYA  187 (273)
Q Consensus       108 ~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~a  187 (273)
                      +++|+|+|++.|++++||||||++|++||++++|+|++|+++.|+++...    ...++|+++|||+||+||||||||||
T Consensus        95 ~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~----~~~f~v~~edYLlGL~DLtGEL~R~a  170 (249)
T 3axj_A           95 PAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLKISQ----SEGFHLDVEDYLLGILQLASELSRFA  170 (249)
T ss_dssp             CTTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCBSST----TTSSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccCC----CcccccCHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999987542    35689999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCCCCCh
Q psy10794        188 IGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGSEMPR  255 (273)
Q Consensus       188 in~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgle~~~  255 (273)
                      ||+|+.| |++.|++|++||++||++|++||+| |++||||+|++||+|+|||++||+++|||+.+++
T Consensus       171 in~v~~G-d~~~~~~i~~fm~~Ly~~f~~Ln~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~~~~~  236 (249)
T 3axj_A          171 TNSVTMG-DYERPLNISHFIGDLNTGFRLLNLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKE  236 (249)
T ss_dssp             HHHHHTT-CCSHHHHHHHHHHHHHHHHHHTCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Confidence            9999999 9999999999999999999999998 8999999999999999999999999999995443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	3e-48

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (399), Expect = 3e-48
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 34  VVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLRS----DTQKVLEEAE 89
           V + F +    +  +QD  E + K+ + +   ++ ++ LL  + +     D  K   +A 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 90  SRLNILMQTHFKSIKAELVGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQ 149
                 ++TH  S+K +   E  Y++   +   LQ  +    F+ YL++  L+  + V +
Sbjct: 63  EHFGT-VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query: 150 KMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYAIGSVAAGSDSTDCINATNTVRD 209
            +    G E +  +   L   +++ GV  L+ EL R ++ SV AG D +  ++ +  + +
Sbjct: 122 IL----GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAG-DYSRPLHISTFINE 176

Query: 210 LYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRG 250
           L  +       +     ++   LK  ++K+E  VY + +RG
Sbjct: 177 LD-SGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-66  Score=458.42  Aligned_cols=213  Identities=21%  Similarity=0.319  Sum_probs=205.1

Q ss_pred             ChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10794         32 SPVVQEFRKYAIIMNTKQDKYERLVKISRDITIESKRVIFLLHTLLR----SDTQKVLEEAESRLNILMQTHFKSIKAEL  107 (273)
Q Consensus        32 ~~~~~~F~~~~~~Ld~~~d~REriik~sRdIt~~SK~~If~LHR~~~----~~~~~~l~~A~~~l~~i~~~~~~~La~~l  107 (273)
                      |++.++|++|+++||++||+||+|+|+|||||+.||++||+|||+|+    ...++++++|.+.++++++ .+++|++++
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~l~~~~   79 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTKF   79 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            68999999999999999999999999999999999999999999987    3467899999999999999 999999999


Q ss_pred             cCCchhhHhhhhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCcccccccCCCChhHHHhhHHhhHhHHHHHH
Q psy10794        108 VGEDLYQYIRAFSAGLQEFIEAYTFLHYLKSNHLIGWDHVEQKMEELCGPEAEESQVKLLTPTEFVLGVGDLSGELMRYA  187 (273)
Q Consensus       108 ~~~~~~ry~~~~s~~lQEyvEA~sf~~~L~~~~Lit~eev~~~l~~~~~~~~~~~~~~~v~~edYLlGL~DLtGELmR~a  187 (273)
                      +++++|+|++.|++++||||||++|++||++++|+|++++++.++++.++    ...++|+++|||+||+||||||||+|
T Consensus        80 ~~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~~l~~~~~~----~~~~~v~~~dYL~Gl~DltGEL~R~a  155 (217)
T d1j1ja_          80 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDR----EKGFHLDVEDYLSGVLILASELSRLS  155 (217)
T ss_dssp             CGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSS----SSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCc----cccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988754    36679999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHHHhhhHhHHHhCC
Q psy10794        188 IGSVAAGSDSTDCINATNTVRDLYVAMLASGVSRVKEASRKLAVLKQSLQKMERTVYTVKVRGS  251 (273)
Q Consensus       188 in~v~~G~d~~~~~~i~~fm~~ly~~f~~L~lk~n~~LRkK~D~lk~~lkKvE~v~Ydl~iRgl  251 (273)
                      ||+++.| |++.|.++++||++||++|+.||++ |++||||+|++||+|+|||++|||++|||+
T Consensus       156 in~v~~g-d~~~~~~i~~f~~~l~~~f~~l~~~-~~~LrkK~d~~k~sl~KvE~~~Ydl~vRGl  217 (217)
T d1j1ja_         156 VNSVTAG-DYSRPLHISTFINELDSGFRLLNLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGF  217 (217)
T ss_dssp             HHHHHTT-CSSHHHHHHHHHHHHHHHHTTCCCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHhcc-CHHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999 9999999999999999999999998 899999999999999999999999999996