Psyllid ID: psy10801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
MDGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
cEEcccccEEEccEEEEEEcHHHHHccccEEcccccHHHHHHHHcccccccEEEEEEccccccccccEEEEEccccccccccccEEEEEcccccccEEEEcccHHHHcHHcccHHHHHHHHHHHHccccccccccEEEEcccccccccccccc
ccccccccEEEEcEEEEcccHHHHcccccEEEccccHHHHHHHHHccccEEEEEEEEEcccccccEcEEEEEcccccccccccEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccc
mdgsadgtqysaDRILITVSLGVLksnlitfvpplppknlnaikglAVETSVLYFVLFQGLAFGTIDKIFIRfpkkwwpedyqgfhffwtqhdeqtlfkdmahpeifDFEKVLQADIMRLFRHFlggayiipepirIVRSVwsinphfrgsyr
mdgsadgtqysadRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAyiipepirivrsvwsinphfrgsyr
MDGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
**********SADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHF*****
MDGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
********QYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
****ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDGSADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
Q99K82555 Spermine oxidase OS=Mus m no N/A 0.797 0.219 0.276 4e-12
Q9NWM0555 Spermine oxidase OS=Homo yes N/A 0.797 0.219 0.276 5e-12
Q6YYZ1 763 Lysine-specific histone d yes N/A 0.856 0.171 0.293 4e-09
Q8NB78822 Lysine-specific histone d no N/A 0.862 0.160 0.271 8e-09
Q8CIG3826 Lysine-specific histone d no N/A 0.862 0.159 0.280 9e-09
Q9CAE3 789 Lysine-specific histone d no N/A 0.875 0.169 0.282 1e-08
Q6QHF9649 Peroxisomal N(1)-acetyl-s no N/A 0.830 0.195 0.271 1e-08
Q865R1512 Peroxisomal N(1)-acetyl-s no N/A 0.836 0.25 0.267 2e-08
O64411500 Polyamine oxidase OS=Zea N/A N/A 0.856 0.262 0.263 2e-08
Q8H191497 Probable polyamine oxidas no N/A 0.810 0.249 0.271 1e-07
>sp|Q99K82|SMOX_MOUSE Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1 Back     alignment and function desciption
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 70/177 (39%), Gaps = 55/177 (31%)

Query: 12  ADRILITVSLGVLKSNLITFVPP-LPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIF 70
           AD +++TVSLGVLK    +F  P LP + + AI  L +               GT DKIF
Sbjct: 325 ADHVIVTVSLGVLKRQYTSFFRPCLPTEKVAAIHRLGI---------------GTTDKIF 369

Query: 71  IRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVLQADIM------------ 118
           + F + +W  +     F W    E      + +P    + K+   D++            
Sbjct: 370 LEFEEPFWGPECNSLQFVWEDEAESC---TLTYPPELWYRKICGFDVLYPPERYGHVLSG 426

Query: 119 -----------------------RLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
                                   + R F G   I P+P RI+RS W  NP+FRGSY
Sbjct: 427 WICGEEALVMERCDDEAVAEICTEMLRQFTGNPNI-PKPRRILRSAWGSNPYFRGSY 482
Flavoenzyme which catalyzes the oxidation of spermine to spermidine. Can also use N(1)-acetylspermine and spermidine as substrates, with different affinity depending on the isoform (isozyme) and on the experimental conditions. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs. May contribute to beta-alanine production via aldehyde dehydrogenase conversion of 3-amino-propanal.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9NWM0|SMOX_HUMAN Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1 Back     alignment and function description
>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1 Back     alignment and function description
>sp|Q8NB78|KDM1B_HUMAN Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3 Back     alignment and function description
>sp|Q8CIG3|KDM1B_MOUSE Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b PE=1 SV=1 Back     alignment and function description
>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1 Back     alignment and function description
>sp|Q6QHF9|PAOX_HUMAN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3 Back     alignment and function description
>sp|Q865R1|PAOX_BOVIN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3 Back     alignment and function description
>sp|O64411|PAO_MAIZE Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1 Back     alignment and function description
>sp|Q8H191|PAO4_ARATH Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
195119682 508 GI19892 [Drosophila mojavensis] gi|19390 0.803 0.242 0.362 3e-18
194884097 509 GG20170 [Drosophila erecta] gi|190659319 0.803 0.241 0.350 3e-17
194752790 509 GF12528 [Drosophila ananassae] gi|190620 0.849 0.255 0.342 4e-17
322795334 353 hypothetical protein SINV_13798 [Solenop 0.928 0.402 0.314 2e-16
19922014 509 CG7737 [Drosophila melanogaster] gi|7303 0.849 0.255 0.337 3e-16
170045018 791 peroxisomal N1-acetyl-spermine/spermidin 0.869 0.168 0.331 4e-16
170065849 947 spermine oxidase [Culex quinquefasciatus 0.869 0.140 0.331 4e-16
195426936 501 GK19322 [Drosophila willistoni] gi|19415 0.823 0.251 0.338 6e-16
322795354 838 hypothetical protein SINV_80022 [Solenop 0.875 0.159 0.309 7e-16
195402467 505 GJ15061 [Drosophila virilis] gi|19414069 0.823 0.249 0.355 8e-16
>gi|195119682|ref|XP_002004358.1| GI19892 [Drosophila mojavensis] gi|193909426|gb|EDW08293.1| GI19892 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score = 96.3 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 48/171 (28%)

Query: 12  ADRILITVSLGVLK-SNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIF 70
           AD +++TVSLGVLK  +L  F P LP     AI               QGLAFGT++KIF
Sbjct: 260 ADHVIVTVSLGVLKEQHLQMFDPQLPVAKQRAI---------------QGLAFGTVNKIF 304

Query: 71  IRFPKKWWPEDYQGFHFFWTQHD-------EQTLFKDM---------------------- 101
           + FP+ +WPED+ GF   W + D        +   +D+                      
Sbjct: 305 VEFPEAFWPEDWTGFTLLWREEDLGDIRNTSRAWLEDVFGFYRVSYQPRVLAGWIINASG 364

Query: 102 AHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
            H E  D  +VL A  M LFR FL   + IP+P+    S W  NP+FRGSY
Sbjct: 365 RHMESLDRNEVL-AGCMYLFRRFL--HWHIPDPVSFCTSAWYTNPNFRGSY 412

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194884097|ref|XP_001976132.1| GG20170 [Drosophila erecta] gi|190659319|gb|EDV56532.1| GG20170 [Drosophila erecta] Back     alignment and taxonomy information
>gi|194752790|ref|XP_001958702.1| GF12528 [Drosophila ananassae] gi|190620000|gb|EDV35524.1| GF12528 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|322795334|gb|EFZ18139.1| hypothetical protein SINV_13798 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|19922014|ref|NP_610641.1| CG7737 [Drosophila melanogaster] gi|7303656|gb|AAF58708.1| CG7737 [Drosophila melanogaster] gi|15292313|gb|AAK93425.1| LD46713p [Drosophila melanogaster] gi|220946470|gb|ACL85778.1| CG7737-PA [synthetic construct] Back     alignment and taxonomy information
>gi|170045018|ref|XP_001850121.1| peroxisomal N1-acetyl-spermine/spermidine oxidase [Culex quinquefasciatus] gi|167868073|gb|EDS31456.1| peroxisomal N1-acetyl-spermine/spermidine oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|170065849|ref|XP_001868046.1| spermine oxidase [Culex quinquefasciatus] gi|167862588|gb|EDS25971.1| spermine oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195426936|ref|XP_002061539.1| GK19322 [Drosophila willistoni] gi|194157624|gb|EDW72525.1| GK19322 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|322795354|gb|EFZ18159.1| hypothetical protein SINV_80022 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|195402467|ref|XP_002059826.1| GJ15061 [Drosophila virilis] gi|194140692|gb|EDW57163.1| GJ15061 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
ZFIN|ZDB-GENE-030131-5768495 zgc:66484 "zgc:66484" [Danio r 0.660 0.204 0.333 2e-13
FB|FBgn0035943480 CG5653 [Drosophila melanogaste 0.941 0.3 0.364 2.7e-13
FB|FBgn0033584 509 CG7737 [Drosophila melanogaste 0.483 0.145 0.411 9.2e-11
FB|FBgn0036749486 CG7460 [Drosophila melanogaste 0.941 0.296 0.327 1.8e-10
FB|FBgn0036750479 CG6034 [Drosophila melanogaste 0.941 0.300 0.333 2.2e-10
UNIPROTKB|F2Z2A7591 KDM1B "Lysine-specific histone 0.457 0.118 0.364 3.3e-09
UNIPROTKB|H0Y6H0640 KDM1B "Lysine-specific histone 0.457 0.109 0.364 4.2e-09
MGI|MGI:1916983 504 Paox "polyamine oxidase (exo-N 0.450 0.136 0.364 6.1e-09
UNIPROTKB|Q8NB78822 KDM1B "Lysine-specific histone 0.457 0.085 0.364 7.9e-09
UNIPROTKB|J3KPL2823 KDM1B "Lysine-specific histone 0.457 0.085 0.364 7.9e-09
ZFIN|ZDB-GENE-030131-5768 zgc:66484 "zgc:66484" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 148 (57.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 41/123 (33%), Positives = 64/123 (52%)

Query:     6 DGTQYSADRILITVSLGVLKSNLIT-FVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFG 64
             +G  + AD +++TVSLGVLK +  T F P LP K L+AI  L                FG
Sbjct:   260 NGQTFEADHVIVTVSLGVLKEHAKTMFDPTLPEKKLSAINDLG---------------FG 304

Query:    65 TIDKIFIRFPKKWWPEDYQGFHFFWTQHDE-QTLFKDMAHPEIFD---FEKVLQADIMRL 120
              ++KIF+ F K +WP+D  G    W +  E + +++D++  E +    F+K+   D +  
Sbjct:   305 IVNKIFLFFEKSFWPDDCAGVQLVWKEGPEDKDVYEDLSEGEDWKQTWFKKITGFDTVA- 363

Query:   121 FRH 123
              RH
Sbjct:   364 -RH 365
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
FB|FBgn0035943 CG5653 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033584 CG7737 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036749 CG7460 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036750 CG6034 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z2A7 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y6H0 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916983 Paox "polyamine oxidase (exo-N4-amino)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NB78 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KPL2 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
pfam01593444 pfam01593, Amino_oxidase, Flavin containing amine 5e-17
PLN02676487 PLN02676, PLN02676, polyamine oxidase 2e-16
PLN03000 881 PLN03000, PLN03000, amine oxidase 2e-12
PLN02268435 PLN02268, PLN02268, probable polyamine oxidase 2e-12
PLN02976 1713 PLN02976, PLN02976, amine oxidase 4e-12
PLN02568 539 PLN02568, PLN02568, polyamine oxidase 2e-08
PLN02328 808 PLN02328, PLN02328, lysine-specific histone demeth 4e-08
PLN02529 738 PLN02529, PLN02529, lysine-specific histone demeth 5e-08
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase Back     alignment and domain information 
 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 40/169 (23%)

Query: 6   DGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGT 65
           DG    AD +++TV LGVLK   I F+PPLP     AI               + L FG+
Sbjct: 243 DGRTIEADAVIVTVPLGVLKR--ILFLPPLPAAKQEAI---------------RNLGFGS 285

Query: 66  IDKIFIRFPKKWWPEDYQGFHFFWTQHDEQ------TLFKDMAHPEI------------- 106
           + K+F+ F   +WPE+   F    T    +      T     +   +             
Sbjct: 286 VSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAAREL 345

Query: 107 --FDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSYR 153
                E++L+A ++R  R  LG    +P+P+  + S W  +P+ RGSY 
Sbjct: 346 EDLSDEELLEA-VLRDLRKLLGPED-VPDPVNFLVSDWHTDPYARGSYS 392

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase Back     alignment and domain information
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase Back     alignment and domain information
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase Back     alignment and domain information
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase Back     alignment and domain information
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase Back     alignment and domain information
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
KOG0685|consensus498 99.97
PLN02976 1713 amine oxidase 99.93
PLN02676487 polyamine oxidase 99.92
PLN02568539 polyamine oxidase 99.91
PLN03000 881 amine oxidase 99.91
PLN02529 738 lysine-specific histone demethylase 1 99.89
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.88
KOG0029|consensus501 99.87
PLN02268435 probable polyamine oxidase 99.86
COG1231450 Monoamine oxidase [Amino acid transport and metabo 99.77
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 99.66
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 99.02
PLN02576496 protoporphyrinogen oxidase 98.8
PRK12416463 protoporphyrinogen oxidase; Provisional 98.7
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 98.67
PRK11883451 protoporphyrinogen oxidase; Reviewed 98.61
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 98.32
PRK07233434 hypothetical protein; Provisional 98.09
PLN02612567 phytoene desaturase 98.01
PRK07208479 hypothetical protein; Provisional 96.79
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 96.65
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 94.45
PLN02487569 zeta-carotene desaturase 92.8
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 90.13
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 83.66
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 81.3
>KOG0685|consensus Back     alignment and domain information 
Probab=99.97  E-value=1.1e-31  Score=231.48  Aligned_cols=135  Identities=41%  Similarity=0.799  Sum_probs=117.2

Q ss_pred             CEEccCCCEEEcCEEEEecChHHHhhCC-ccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCC
Q psy10801          1 MDGSADGTQYSADRILITVSLGVLKSNL-ITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWP   79 (153)
Q Consensus         1 ~V~t~~G~~~~ad~vIvTvPl~vLk~~~-i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~   79 (153)
                      +|+|+||+++.||+|||||||||||+.+ --|.|+||..|++||++               +++|+.+||||+|+++||+
T Consensus       264 ~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~---------------lgfGtv~KiFLE~E~pfwp  328 (498)
T KOG0685|consen  264 KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIER---------------LGFGTVNKIFLEFEEPFWP  328 (498)
T ss_pred             EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHh---------------ccCCccceEEEEccCCCCC
Confidence            4789999999999999999999999743 37999999999999999               9999999999999999999


Q ss_pred             CCCCceEEEeccCCcccccc--CCCc----------------------------ccccccHHHHHHHHHHHHHHHhCCCC
Q psy10801         80 EDYQGFHFFWTQHDEQTLFK--DMAH----------------------------PEIFDFEKVLQADIMRLFRHFLGGAY  129 (153)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~----------------------------~~l~~f~~~~~~~~~~~L~~~~g~~~  129 (153)
                      .+.+++.++|.+.+...+..  +.|.                            ..+++  +++++.++..|++++++. 
T Consensus       329 ~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsd--Eev~e~~~~~lr~fl~n~-  405 (498)
T KOG0685|consen  329 SDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSD--EEVLEGLTKLLRKFLKNP-  405 (498)
T ss_pred             CCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCH--HHHHHHHHHHHHHhcCCC-
Confidence            99999999999887221110  1111                            12333  889999999999999976 


Q ss_pred             CCCCCeEEEEecCCCCCCCCcCCC
Q psy10801        130 IIPEPIRIVRSVWSINPHFRGSYR  153 (153)
Q Consensus       130 ~~~~p~~~~~~~W~~dp~~~Gsys  153 (153)
                      .+|+|.++.+++|.+|||+|||||
T Consensus       406 ~iP~p~kilRs~W~snp~frGSYS  429 (498)
T KOG0685|consen  406 EIPKPKKILRSQWISNPFFRGSYS  429 (498)
T ss_pred             CCCCchhhhhhcccCCCccCceee
Confidence            899999999999999999999997

>PLN02976 amine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>KOG0029|consensus Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
4gu1_A784 Crystal Structure Of Lsd2 Length = 784 7e-10
4gur_A776 Crystal Structure Of Lsd2-npac With H3 In Space Gro 7e-10
4fwe_A796 Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup 8e-10
1b37_A472 A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys 2e-09
3kpf_A478 X-Ray Structure Of The Mutant Lys300met Of Polyamin 8e-09
2xaf_A852 Crystal Structure Of Lsd1-Corest In Complex With Pa 1e-06
2h94_A664 Crystal Structure And Mechanism Of Human Lysine-Spe 2e-06
2hko_A664 Crystal Structure Of Lsd1 Length = 664 2e-06
2iw5_A666 Structural Basis For Corest-dependent Demethylation 2e-06
2ejr_A662 Lsd1-Tranylcypromine Complex Length = 662 2e-06
2dw4_A660 Crystal Structure Of Human Lsd1 At 2.3 A Resolution 2e-06
2v1d_A730 Structural Basis Of Lsd1-Corest Selectivity In Hist 2e-06
2x0l_A734 Crystal Structure Of A Neuro-Specific Splicing Vari 2e-06
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2 Length = 784 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 41/173 (23%)
Query: 4   SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
           + DGT YSA ++L+TV L +L+   I F PPL  K + AI  L                 
Sbjct: 574 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGA--------------- 618
Query: 64  GTIDKIFIRFPKKWWPEDYQGFHFFW------TQHDEQTLFKDM---------------- 101
           G I+KI ++FP ++W    QG  FF       ++     +F DM                
Sbjct: 619 GIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGE 678
Query: 102 --AHPEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
             A     D ++VLQ  +  L   F      +P+P +   + WS +P  + +Y
Sbjct: 679 AVASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAY 729
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21 Length = 776 Back     alignment and structure
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221 At 2.13a Length = 796 Back     alignment and structure
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472 Back     alignment and structure
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478 Back     alignment and structure
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852 Back     alignment and structure
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664 Back     alignment and structure
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664 Back     alignment and structure
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666 Back     alignment and structure
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662 Back     alignment and structure
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660 Back     alignment and structure
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730 Back     alignment and structure
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 3e-34
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 4e-27
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 5e-27
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 9e-26
1s3e_A 520 Amine oxidase [flavin-containing] B; human monoami 2e-24
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 2e-20
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 5e-20
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 4e-16
1rsg_A 516 FMS1 protein; FAD binding motif, oxidoreductase; H 4e-16
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 4e-11
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 2e-10
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 Back     alignment and structure
 Score =  123 bits (310), Expect = 3e-34
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 36/169 (21%)

Query: 4   SADGTQYSADRILITVSLGVLKSNLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAF 63
           + D + YSAD ++++ SLGVL+S+LI F P LP   + AI                    
Sbjct: 251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAI---------------YQFDM 295

Query: 64  GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVL---------- 113
               KIF++FP+K+WPE      F +               + +    VL          
Sbjct: 296 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 355

Query: 114 ----------QADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
                     +A+IM++ R    G   +P+   I+   W  +  ++G++
Sbjct: 356 RIEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 403
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 130 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 99.89
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 99.88
4gut_A776 Lysine-specific histone demethylase 1B; histone de 99.84
1rsg_A 516 FMS1 protein; FAD binding motif, oxidoreductase; H 99.83
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.77
1s3e_A 520 Amine oxidase [flavin-containing] B; human monoami 99.72
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 99.71
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.7
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 99.68
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 99.68
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 99.65
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.55
3ayj_A 721 Pro-enzyme of L-phenylalanine oxidase; amino acid 99.44
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 99.14
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 99.05
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 98.93
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 98.83
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 98.71
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 98.48
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 97.99
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 97.6
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 97.48
4gde_A 513 UDP-galactopyranose mutase; flavin adenine dinucle 97.45
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 97.35
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 95.46
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 95.33
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 90.44
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
Probab=99.89  E-value=3.6e-23  Score=184.76  Aligned_cols=129  Identities=29%  Similarity=0.571  Sum_probs=102.3

Q ss_pred             CCEEEcCEEEEecChHHHhh--CCccccCCCcHHHHHHHHcccccccceeEeeeeeeeeccccEEEEEeCCCCCCCCCCc
Q psy10801          7 GTQYSADRILITVSLGVLKS--NLITFVPPLPPKNLNAIKGLAVETSVLYFVLFQGLAFGTIDKIFIRFPKKWWPEDYQG   84 (153)
Q Consensus         7 G~~~~ad~vIvTvPl~vLk~--~~i~F~P~Lp~~k~~ai~~~~~~~~~~~~~~~~~l~~g~~~Ki~l~f~~~fW~~~~~~   84 (153)
                      |++++||+||||+|+++|++  +.|.|.|+||++|++||++               ++||..+||+|.|+++||+++..+
T Consensus       442 ~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~---------------l~~g~~~KV~l~f~~~fW~~~~~~  506 (662)
T 2z3y_A          442 TFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR---------------MGFGNLNKVVLCFDRVFWDPSVNL  506 (662)
T ss_dssp             EEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHH---------------SEECCCEEEEEECSSCCSCTTCSE
T ss_pred             CeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHh---------------CCccceeEEEEEcCcccccCCCCc
Confidence            67899999999999999997  5699999999999999999               999999999999999999876544


Q ss_pred             eEEEe-------------ccCCccccccCCCc------ccccccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEEecCCCC
Q psy10801         85 FHFFW-------------TQHDEQTLFKDMAH------PEIFDFEKVLQADIMRLFRHFLGGAYIIPEPIRIVRSVWSIN  145 (153)
Q Consensus        85 ~~~~~-------------~~~~~~~~~~~~~~------~~l~~f~~~~~~~~~~~L~~~~g~~~~~~~p~~~~~~~W~~d  145 (153)
                      ++.++             +.+....+....+.      ..+.+  +++++.++++|+++||.. ..++|+.+.+++|..|
T Consensus       507 ~G~l~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~lsd--ee~~~~~l~~L~~~~g~~-~~~~p~~~~v~~W~~d  583 (662)
T 2z3y_A          507 FGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD--DVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRAD  583 (662)
T ss_dssp             EEECCSSSTTTTEEEEEECCSSSSEEEEEECTHHHHHHTTSCH--HHHHHHHHHHHHHHHCTT-SSCCCSEEEECCTTTC
T ss_pred             eeeecCCCCCCCceeEEEeCCCCCEEEEEeccHhHHHHHhCCH--HHHHHHHHHHHHHHhCCc-ccCCCceeEEEEECCC
Confidence            54432             22111111110000      11223  788999999999999975 4679999999999999


Q ss_pred             CCCCcCCC
Q psy10801        146 PHFRGSYR  153 (153)
Q Consensus       146 p~~~Gsys  153 (153)
                      ||++||||
T Consensus       584 p~~~Gsys  591 (662)
T 2z3y_A          584 PWARGSYS  591 (662)
T ss_dssp             TTTSSSCE
T ss_pred             CCCCcccc
Confidence            99999995
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 153
d1b5qa2112 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea 8e-13
d2dw4a3109 d.16.1.5 (A:655-763) Lysine-specific histone demet 1e-12
d2v5za2112 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (H 5e-09
d2iida2113 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan 1e-07
d2iida1370 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M 7e-05
d1b5qa1347 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai 8e-05
d2v5za1383 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H 2e-04
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 112 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 59.1 bits (142), Expect = 8e-13
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 21/109 (19%)

Query: 64  GTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLFKDMAHPEIFDFEKVL---------- 113
               KIF++FP+K+WPE      F +               + +    VL          
Sbjct: 3   AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 62

Query: 114 ----------QADIMRLFRHFLGGAYIIPEPIRIVRSVWSINPHFRGSY 152
                     +A+IM++ R    G   +P+   I+   W  +  ++G++
Sbjct: 63  RIEQQSDEQTKAEIMQVLRKMFPG-KDVPDATDILVPRWWSDRFYKGTF 110
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 113 Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d2dw4a3109 Lysine-specific histone demethylase 1, LSD1 {Human 99.77
d1b5qa2112 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 99.74
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 99.7
d2iida2113 L-aminoacid oxidase {Malayan pit viper (Calloselas 99.55
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 98.47
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 98.17
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.15
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 90.51
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 82.03
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.6e-19  Score=121.00  Aligned_cols=91  Identities=21%  Similarity=0.501  Sum_probs=69.5

Q ss_pred             eeccccEEEEEeCCCCCCCCCCceEEEeccCCccccc----cCCCcccccccH-------------HHHHHHHHHHHHHH
Q psy10801         62 AFGTIDKIFIRFPKKWWPEDYQGFHFFWTQHDEQTLF----KDMAHPEIFDFE-------------KVLQADIMRLFRHF  124 (153)
Q Consensus        62 ~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~f~-------------~~~~~~~~~~L~~~  124 (153)
                      +||+.+||+|+|+++||+++...++.+++..+.....    ...-.+.|..|.             +++++.++++|+++
T Consensus         1 G~G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~~~   80 (109)
T d2dw4a3           1 GFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGI   80 (109)
T ss_dssp             EECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTTTCEEECC--CCEEEEEECHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCChhEEEEEEECCCCCCCCCCEeEEEecCCCCceEEeeccCCCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            6999999999999999998877777776654432110    000011222221             88999999999999


Q ss_pred             hCCCCCCCCCeEEEEecCCCCCCCCcCCC
Q psy10801        125 LGGAYIIPEPIRIVRSVWSINPHFRGSYR  153 (153)
Q Consensus       125 ~g~~~~~~~p~~~~~~~W~~dp~~~Gsys  153 (153)
                      ||++ .+++|+++++++|++|||++||||
T Consensus        81 ~~~~-~~~~~~~~~~~~W~~dp~~~GsYS  108 (109)
T d2dw4a3          81 FGSS-AVPQPKETVVSRWRADPWARGSYS  108 (109)
T ss_dssp             HCTT-TCCCCSEEEECCTTTCTTTSSSCE
T ss_pred             hCcc-ccCcccEEEEeccCCCCccCEecC
Confidence            9976 678999999999999999999997
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure