Psyllid ID: psy10819

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAKKNFKKESYF
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHccccHHHHHcccHHHHHHHHHHHHccc
MVEAEEEYMEQMQVLVSCFLrpfkmaasskrppcshedvnsiflnSETVLFLHQIFLKGLTsrmeswptlvlvdfsipysyEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLemkpacqgrslemfltfpmhqnakknfkkesyf
MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTfpmhqnakknfkkesyf
MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAKKNFKKESYF
***********MQVLVSCFLRPFKM***********EDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFP***************
MVEAEEEYMEQMQVLVSCFLRPFK*********CSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLK************L*MFLTFPMHQNAKKNFKKESYF
**********QMQVLVSCFLRPFKM***********EDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAKKNFKKESYF
MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAKKNFKKESYF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAKKNFKKESYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query173 2.2.26 [Sep-21-2011]
A2CEA7 1244 Ras-specific guanine nucl yes N/A 0.791 0.110 0.571 5e-48
P27671 1262 Ras-specific guanine nucl yes N/A 0.791 0.108 0.559 6e-48
P28818 1244 Ras-specific guanine nucl yes N/A 0.791 0.110 0.559 1e-47
O14827 1237 Ras-specific guanine nucl no N/A 0.791 0.110 0.565 2e-47
Q99JE4 1190 Ras-specific guanine nucl yes N/A 0.791 0.115 0.571 2e-47
P70392 1189 Ras-specific guanine nucl no N/A 0.791 0.115 0.565 3e-47
Q13972 1275 Ras-specific guanine nucl yes N/A 0.791 0.107 0.552 5e-47
Q6PAJ1 1270 Breakpoint cluster region no N/A 0.791 0.107 0.238 3e-07
P11274 1271 Breakpoint cluster region no N/A 0.791 0.107 0.238 9e-07
Q1ZXH8 1632 Guanine exchange factor f no N/A 0.745 0.079 0.248 3e-06
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1 Back     alignment and function desciption
 Score =  189 bits (481), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 114/161 (70%), Gaps = 24/161 (14%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           MVEAE EY+ Q+ +LV+CFLRP +MAASSK+PP SH+DV+SIFLNSET++FLH+IF +GL
Sbjct: 247 MVEAETEYVHQLSILVNCFLRPLRMAASSKKPPISHDDVSSIFLNSETIMFLHEIFHQGL 306

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
            +R+ +WPTLV                        L DLFD+LLPML IYQE+VRNH YS
Sbjct: 307 KARIANWPTLV------------------------LADLFDILLPMLNIYQEFVRNHQYS 342

Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
           LQVL  CKQ  +F +LLK+ E   AC+GR LE FLT+PM Q
Sbjct: 343 LQVLANCKQNRDFDKLLKQYESNAACEGRMLETFLTYPMFQ 383
Functions as a calcium-regulated nucleotide exchange factor activating both Ras and rac1 through the exchange of bound GDP for GTP. May function in synaptic plasticity.
Danio rerio (taxid: 7955)
>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2 Back     alignment and function description
>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus GN=Rasgrf1 PE=1 SV=1 Back     alignment and function description
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2 Back     alignment and function description
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus norvegicus GN=Rasgrf2 PE=1 SV=1 Back     alignment and function description
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus GN=Rasgrf2 PE=1 SV=2 Back     alignment and function description
>sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAJ1|BCR_MOUSE Breakpoint cluster region protein OS=Mus musculus GN=Bcr PE=1 SV=3 Back     alignment and function description
>sp|P11274|BCR_HUMAN Breakpoint cluster region protein OS=Homo sapiens GN=BCR PE=1 SV=2 Back     alignment and function description
>sp|Q1ZXH8|GXCDD_DICDI Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum GN=gxcDD PE=4 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
189233725 1406 PREDICTED: similar to AGAP001238-PA [Tri 0.791 0.097 0.763 3e-65
380018321 1401 PREDICTED: LOW QUALITY PROTEIN: ras-spec 0.791 0.097 0.757 2e-64
307177674 1156 Ras-specific guanine nucleotide-releasin 0.791 0.118 0.765 4e-64
157128743 910 hypothetical protein AaeL_AAEL011225 [Ae 0.791 0.150 0.751 5e-64
347965563 1618 AGAP001238-PB [Anopheles gambiae str. PE 0.791 0.084 0.751 5e-64
347965565 1505 AGAP001238-PA [Anopheles gambiae str. PE 0.791 0.091 0.751 6e-64
332024168 554 Ras-specific guanine nucleotide-releasin 0.791 0.247 0.757 1e-63
312372484 895 hypothetical protein AND_20095 [Anophele 0.791 0.153 0.745 1e-63
170043899 1074 conserved hypothetical protein [Culex qu 0.791 0.127 0.745 1e-63
350407614 1513 PREDICTED: ras-specific guanine nucleoti 0.791 0.090 0.753 3e-63
>gi|189233725|ref|XP_970314.2| PREDICTED: similar to AGAP001238-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 129/161 (80%), Gaps = 24/161 (14%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           MVEAEEEYMEQM+VLVSCFLRPFKMAASSK+PPCSHEDVNSIFLNSETVLFLHQIFLKGL
Sbjct: 267 MVEAEEEYMEQMEVLVSCFLRPFKMAASSKKPPCSHEDVNSIFLNSETVLFLHQIFLKGL 326

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
           TSR+ESWPTLV                        LGDLF MLLPML IYQEYVRNHHYS
Sbjct: 327 TSRLESWPTLV------------------------LGDLFSMLLPMLSIYQEYVRNHHYS 362

Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
           LQVLTECKQ P+F  +LKRLE KPAC GRSLE FLT+PMHQ
Sbjct: 363 LQVLTECKQSPQFSAMLKRLESKPACHGRSLETFLTYPMHQ 403

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380018321|ref|XP_003693080.1| PREDICTED: LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|307177674|gb|EFN66720.1| Ras-specific guanine nucleotide-releasing factor 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157128743|ref|XP_001661501.1| hypothetical protein AaeL_AAEL011225 [Aedes aegypti] gi|108872489|gb|EAT36714.1| AAEL011225-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347965563|ref|XP_003435786.1| AGAP001238-PB [Anopheles gambiae str. PEST] gi|333470454|gb|EGK97627.1| AGAP001238-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347965565|ref|XP_321917.5| AGAP001238-PA [Anopheles gambiae str. PEST] gi|333470453|gb|EAA01783.5| AGAP001238-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|332024168|gb|EGI64383.1| Ras-specific guanine nucleotide-releasing factor 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|312372484|gb|EFR20436.1| hypothetical protein AND_20095 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170043899|ref|XP_001849605.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867180|gb|EDS30563.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|350407614|ref|XP_003488143.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
UNIPROTKB|F1ND09 1146 RASGRF2 "Uncharacterized prote 0.445 0.067 0.666 7e-46
ZFIN|ZDB-GENE-060504-1 1244 rasgrf2b "Ras protein-specific 0.445 0.061 0.666 7.9e-45
UNIPROTKB|F1RF08 1144 RASGRF2 "Uncharacterized prote 0.445 0.067 0.641 1.7e-44
UNIPROTKB|F1MEL5 1145 RASGRF2 "Uncharacterized prote 0.445 0.067 0.641 1.7e-44
UNIPROTKB|D6RAS9 1151 RASGRF2 "Ras-specific guanine 0.445 0.066 0.641 1.7e-44
UNIPROTKB|E2RTG6 1170 RASGRF2 "Uncharacterized prote 0.445 0.065 0.641 1.8e-44
UNIPROTKB|J9NYT7 1210 RASGRF2 "Uncharacterized prote 0.445 0.063 0.641 2e-44
UNIPROTKB|J9NUI8 1233 RASGRF2 "Uncharacterized prote 0.445 0.062 0.641 2.1e-44
UNIPROTKB|O14827 1237 RASGRF2 "Ras-specific guanine 0.445 0.062 0.641 2.1e-44
UNIPROTKB|J9PAM7 1250 RASGRF2 "Uncharacterized prote 0.445 0.061 0.641 2.2e-44
UNIPROTKB|F1ND09 RASGRF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 282 (104.3 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
 Identities = 52/78 (66%), Positives = 67/78 (85%)

Query:     1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
             MVEAE EY+ Q+ VLV+CFLRP +MAASSK+PP SH+DV+SIFLNSET++FLH+IF +GL
Sbjct:   156 MVEAESEYVHQLYVLVNCFLRPLRMAASSKKPPISHDDVSSIFLNSETIMFLHEIFHQGL 215

Query:    61 TSRMESWPTLVLVD-FSI 77
              +R+ +WPTL+L D F I
Sbjct:   216 KARIANWPTLILADLFDI 233
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
ZFIN|ZDB-GENE-060504-1 rasgrf2b "Ras protein-specific guanine nucleotide-releasing factor 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF08 RASGRF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MEL5 RASGRF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D6RAS9 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTG6 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYT7 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI8 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O14827 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAM7 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13972RGRF1_HUMANNo assigned EC number0.55270.79190.1074yesN/A
P27671RGRF1_MOUSENo assigned EC number0.55900.79190.1085yesN/A
A2CEA7RGRF2_DANRENo assigned EC number0.57140.79190.1101yesN/A
Q99JE4RGRF2_RATNo assigned EC number0.57140.79190.1151yesN/A
P28818RGRF1_RATNo assigned EC number0.55900.79190.1101yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query173
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 2e-22
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 2e-22
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 4e-15
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information 
 Score = 88.0 bits (219), Expect = 2e-22
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 29/160 (18%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           +++ E  Y+  +++LV  FL+P +     + P  S E++ +IF N E +L LHQ FL+ L
Sbjct: 5   LLQTERSYVRDLKILVEVFLKPLR-----ESPILSEEEIKTIFSNIEEILELHQEFLEEL 59

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R+E WP +  +                       GD+F    P   +Y  Y  N+  +
Sbjct: 60  EERLEEWPDIQRI-----------------------GDIFLKFAPFFKVYSTYCSNYPRA 96

Query: 121 LQVLTECKQQPE-FVQLLKRLEMKPACQGRSLEMFLTFPM 159
           L++L + +++   F + LK  E  P C+G  L  FL  P+
Sbjct: 97  LELLKKLRKKNPRFAKFLKECEASPLCRGLDLNSFLIKPV 136

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 173
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 100.0
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.97
KOG4424|consensus 623 99.97
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.96
KOG3523|consensus 695 99.94
KOG4305|consensus 1029 99.93
KOG3520|consensus 1167 99.93
KOG3518|consensus 521 99.92
KOG3521|consensus 846 99.88
KOG2996|consensus 865 99.88
KOG3519|consensus 756 99.83
KOG4240|consensus 1025 99.74
KOG2070|consensus 661 99.72
KOG3522|consensus 925 99.7
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.67
KOG0689|consensus 448 99.6
KOG3524|consensus 850 99.49
KOG3531|consensus 1036 99.47
KOG4269|consensus 1112 97.86
KOG3524|consensus 850 97.27
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 91.85
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information 
Probab=100.00  E-value=5.6e-33  Score=203.15  Aligned_cols=146  Identities=30%  Similarity=0.561  Sum_probs=134.2

Q ss_pred             CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819          1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS   80 (173)
Q Consensus         1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~   80 (173)
                      |++||++||++|+.+.+.|..|+....    +.++..+++.||+|+++|+.+|+.|+.+|+++...|....         
T Consensus         5 li~tE~~Yv~~L~~l~~~y~~~l~~~~----~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~---------   71 (180)
T smart00325        5 LLQTERNYVRDLKLLVEVFLKPLKKEL----KLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSP---------   71 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccc---------
Confidence            579999999999999999999999764    2688999999999999999999999999999998884211         


Q ss_pred             hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819         81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ  160 (173)
                                   ..+|++|.++.+.++.|..||.+++.+...+.++++++.|..|+++++..+.++++++.++|++|||
T Consensus        72 -------------~~i~~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~Pvq  138 (180)
T smart00325       72 -------------ERIGDVFLKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQ  138 (180)
T ss_pred             -------------cHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHH
Confidence                         2699999999999999999999999999999997789999999999999998888999999999999


Q ss_pred             hccchhhhhccc
Q psy10819        161 QNAKKNFKKESY  172 (173)
Q Consensus       161 Ri~rY~LLLe~~  172 (173)
                      |++||+|||+++
T Consensus       139 Rl~rY~lll~~l  150 (180)
T smart00325      139 RLTKYPLLLKEL  150 (180)
T ss_pred             HhccHHHHHHHH
Confidence            999999999874

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>KOG4424|consensus Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>KOG3523|consensus Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>KOG3520|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG0689|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query173
1ki1_B 352 Guanine Nucleotide Exchange Region Of Intersectin I 4e-05
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 2e-04
3qbv_B 351 Structure Of Designed Orthogonal Interaction Betwee 2e-04
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           ++  EE Y+  +Q++   F +P   +        + ++V  IF+N + ++  +   LK L
Sbjct: 17  LIVTEENYVNDLQLVTEIFQKPLMESEL-----LTEKEVAMIFVNWKELIMCNIKLLKAL 71
Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYV-RNHHY 119
             R +      +    +P              + ++GD+    LP +  Y  +  R  + 
Sbjct: 72  RVRKK------MSGEKMP--------------VKMIGDILSAQLPHMQPYIRFCSRQLNG 111
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
           +  +  +  + P+F + +KRLEM P C+G  L  F+  PM +
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQR 153
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query173
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 2e-27
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 5e-26
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 4e-25
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 2e-24
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 4e-21
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 2e-20
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 5e-19
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 5e-19
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 7e-19
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-18
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 6e-17
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 1e-16
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 2e-16
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 3e-16
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 7e-16
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 3e-14
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 9e-12
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 5e-11
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 9e-10
1nty_A 311 Triple functional domain protein; DBL, pleckstrin, 5e-09
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
 Score =  102 bits (257), Expect = 2e-27
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           ++  EE Y+  +Q++   F +P       +    + ++V  IF+N + ++  +   LK L
Sbjct: 90  LIVTEENYVNDLQLVTEIFQKPLT-----ESELLTEKEVAMIFVNWKELIMCNIKLLKAL 144

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R +                        V  IG   D+    LP +  Y  +       
Sbjct: 145 RVRKKMSG-----------------EKMPVKMIG---DILSAQLPHMQPYIRFCSCQLNG 184

Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
             ++ +   + P+F + +KRL M P C+G  L  F+  PM
Sbjct: 185 AALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPM 224
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 100.0
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 100.0
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 100.0
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 100.0
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 100.0
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 100.0
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 100.0
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 100.0
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 99.98
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 99.98
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 99.97
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 99.97
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.97
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 99.96
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 99.96
1nty_A 311 Triple functional domain protein; DBL, pleckstrin, 99.96
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 99.96
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.95
4gou_A 518 EHRGS-rhogef; RGS domain, DH domain, PH domain, RH 97.48
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 90.19
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
Probab=100.00  E-value=2.4e-35  Score=234.81  Aligned_cols=144  Identities=20%  Similarity=0.285  Sum_probs=122.6

Q ss_pred             CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819          1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS   80 (173)
Q Consensus         1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~   80 (173)
                      |++||++||++|+.+.+.|+.|+...     ++++.++++.||+|+++|+.+|+.|+.+|+++...|....         
T Consensus        27 li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~---------   92 (346)
T 2z0q_A           27 LSQGEEDLIEDLKLAKKAYHDPMLKL-----SIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTE---------   92 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTSCCS---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCCccc---------
Confidence            58999999999999999999999875     3788999999999999999999999999999988776532         


Q ss_pred             hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819         81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ  160 (173)
                                    .||++|.++.+.|++|..||.||+.|...++++++|+.|+.|+++|+..+.|++++|.+||++|||
T Consensus        93 --------------~ig~~f~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~L~~PvQ  158 (346)
T 2z0q_A           93 --------------HVGPILVGWLPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRS  158 (346)
T ss_dssp             --------------CCHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHCC-------------CTTTGGGHHHH
T ss_pred             --------------hHHHHHHHHhhHHHHHHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHhCccCCCCCHHHHHHHHHH
Confidence                          699999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             hccchhhhhccc
Q psy10819        161 QNAKKNFKKESY  172 (173)
Q Consensus       161 Ri~rY~LLLe~~  172 (173)
                      ||+||+|||+++
T Consensus       159 Ri~rY~LLL~~l  170 (346)
T 2z0q_A          159 RLVKYPLLLREI  170 (346)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHH
Confidence            999999999864
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 173
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 7e-15
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 5e-14
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 2e-11
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 3e-11
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 5e-11
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 6e-11
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 6e-11
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 8e-11
d1ntya1184 a.87.1.1 (A:1231-1414) Triple functional domain pr 1e-07
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 7e-15
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 26/162 (16%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           ++  EE Y+  +Q++   F +P       +    + ++V  IF+N + ++  +   LK L
Sbjct: 17  LIVTEENYVNDLQLVTEIFQKPLM-----ESELLTEKEVAMIFVNWKELIMCNIKLLKAL 71

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R +                           + ++GD+    LP +  Y  +       
Sbjct: 72  RVRKKMS--------------------GEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNG 111

Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
             ++ +   + P+F + +KRLEM P C+G  L  F+  PM +
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQR 153
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 100.0
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 100.0
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.98
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.98
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.97
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.97
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.97
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.96
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.96
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.2e-34  Score=209.40  Aligned_cols=146  Identities=16%  Similarity=0.268  Sum_probs=135.2

Q ss_pred             CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819          1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS   80 (173)
Q Consensus         1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~   80 (173)
                      |++||++||++|+.+.++|..|+....    ++++.++++.||+|+++|+.+|..|+.+|+++...|+...         
T Consensus        22 Li~TE~~Yv~~L~~l~~~y~~~l~~~~----~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~~~~~---------   88 (203)
T d2dfka1          22 IMSTERHYIKHLKDICEGYLKQCRKRR----DMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHL---------   88 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHCT----TTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGG---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCccH---------
Confidence            589999999999999999999988643    5789999999999999999999999999999887776532         


Q ss_pred             hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819         81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ  160 (173)
                                   ..||++|.++.+.|++|..||.+|+.+...++++.+++.|..|++.++..+.+++++|.+||++|||
T Consensus        89 -------------~~ig~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Pvq  155 (203)
T d2dfka1          89 -------------SEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQ  155 (203)
T ss_dssp             -------------CCCHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHH
T ss_pred             -------------HHHHHHHHHHHHhHHHHHHHHHhchhHHHHHHHHHhChHHHHHHHHHHHhhhcccCCHHHHHHhHHH
Confidence                         3699999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             hccchhhhhccc
Q psy10819        161 QNAKKNFKKESY  172 (173)
Q Consensus       161 Ri~rY~LLLe~~  172 (173)
                      ||+||+|||+++
T Consensus       156 Ri~rY~llL~~l  167 (203)
T d2dfka1         156 KICKYPLQLAEL  167 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure