Psyllid ID: psy10880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCAK
Secondary Structure (PSIPRED)
ccEEccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEccEEEEEEEEEEEccccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHccccccEEEEEEEEEEEEccccccccccccccccccccccEEEcccccEEEcccccccccccEEEEccccccccccccccccEEEccccEEcccccc
Coil and Loop (DISEMBL)
mmmvdgewwmadddnnddddddddddddddddddddddddddeVIITCKTLISRLTTqrwldvgpswtedehksahsSMLYEyrvtcdphyygngcatlcrprddsfghytcshtgdrkclpgwsgdyctkavqklsptkalpnrtsrtlfcvlepsmqlygncak
Flexible Loop (DISEMBL)
MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDdddddddddddevIITCKtlisrlttqrwldVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQklsptkalpnrtsrtlfcvlepsmqlygncak
Low Complexity Region (SEG)
MMMVDGEWWMAdddnnddddddddddddddddddddddddddEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCAK
Disordered region (IsUnstruct)
*******************************************VIITCKTLISRLTTQRWLDVGPSWTED****AHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLY*****
Disordered Region (DISOPRED)
***VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT**********TEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNC**
Disordered Region (DISEMBL)
MMMVDGEWWMADDDNND**********************DDDEVIITCKTLISRLTTQRWLDVGPS**********SSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCAK
Disordered Region (DISPRO)
***V**EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNC**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
P97677	714	Delta-like protein 1 OS=R	yes	N/A	0.578	0.134	0.520	2e-24
O00548	723	Delta-like protein 1 OS=H	yes	N/A	0.578	0.132	0.510	2e-24
Q61483	722	Delta-like protein 1 OS=M	yes	N/A	0.578	0.132	0.520	3e-24
P10041	833	Neurogenic locus protein	yes	N/A	0.668	0.133	0.437	5e-23
Q8UWJ4	717	Delta-like protein D OS=D	yes	N/A	0.5	0.115	0.518	2e-22
Q6DI48	772	Delta-like protein A OS=D	no	N/A	0.5	0.107	0.506	1e-21
Q9IAT6	664	Delta-like protein C OS=D	no	N/A	0.5	0.125	0.481	9e-21
O57409	615	Delta-like protein B OS=D	no	N/A	0.5	0.134	0.506	3e-19
Q9NR61	685	Delta-like protein 4 OS=H	no	N/A	0.506	0.122	0.452	1e-17
Q90Y57	1242	Protein jagged-1a OS=Dani	no	N/A	0.512	0.068	0.423	1e-16

>sp|P97677|DLL1_RAT Delta-like protein 1 OS=Rattus norvegicus GN=Dll1 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 61/96 (63%)

Query: 38  DDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCA 97
           D  DD      + LISRLTTQR L VG  W++D H S  + + Y YR  CD HYYG GC+
Sbjct: 129 DSPDDLATENPERLISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEHYYGEGCS 188

Query: 98  TLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
             CRPRDD+FGH+TC   G++ C PGW G YCT  +
Sbjct: 189 VFCRPRDDAFGHFTCGERGEKMCDPGWKGQYCTDPI 224

May be involved in cell-to-cell communication in mammalian embryos. May have a role in cellular interactions underlying somitogenesis and development of the nervous system.
Rattus norvegicus (taxid: 10116)

>sp|O00548|DLL1_HUMAN Delta-like protein 1 OS=Homo sapiens GN=DLL1 PE=2 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 61/96 (63%)

Query: 38  DDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCA 97
           D  DD      + LISRL TQR L VG  W++D H S  + + Y YR  CD HYYG GC+
Sbjct: 130 DSPDDLATENPERLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCS 189

Query: 98  TLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
             CRPRDD+FGH+TC   G++ C PGW G YCT+ +
Sbjct: 190 VFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEPI 225

Acts as a ligand for Notch receptors. Blocks the differentiation of progenitor cells into the B-cell lineage while promoting the emergence of a population of cells with the characteristics of a T-cell/NK-cell precursor.

Homo sapiens (taxid: 9606)

>sp|Q61483|DLL1_MOUSE Delta-like protein 1 OS=Mus musculus GN=Dll1 PE=1 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 61/96 (63%)

Query: 38  DDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCA 97
           D  DD      + LISRLTTQR L VG  W++D H S  + + Y YR  CD HYYG GC+
Sbjct: 129 DSPDDLATENPERLISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEHYYGEGCS 188

Query: 98  TLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
             CRPRDD+FGH+TC   G++ C PGW G YCT  +
Sbjct: 189 VFCRPRDDAFGHFTCGDRGEKMCDPGWKGQYCTDPI 224

May be involved in cell-to-cell communication in mammalian embryos. May have a role in cellular interactions underlying somitogenesis and development of the nervous system.

Mus musculus (taxid: 10090)

>sp|P10041|DL_DROME Neurogenic locus protein delta OS=Drosophila melanogaster GN=Dl PE=1 SV=2

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 24/135 (17%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI RL  Q+ L+V   W  ++ +S ++S+ Y++RVTCD +YYG+GCA  CRPRDDSFG
Sbjct: 146 KLLIQRLLVQQVLEVSSEWKTNKSESQYTSLEYDFRVTCDLNYYGSGCAKFCRPRDDSFG 205

Query: 109 HYTCSHTGDRKCLPGWSGDYC-----------------TKAVQKLSPTKALPNRTSRTLF 151
           H TCS TG+  CL GW GDYC                  + V +L    AL N       
Sbjct: 206 HSTCSETGEIICLTGWQGDYCHIPKCAKGCEHGHCDKPNQCVCQLGWKGALCNE------ 259

Query: 152 CVLEPSMQLYGNCAK 166
           CVLEP+  ++G C K
Sbjct: 260 CVLEPNC-IHGTCNK 273

Acts as a ligand for Notch (N) receptor. Essential for proper differentiation of ectoderm. Dl is required for the correct separation of neural and epidermal cell lineages. Fringe (fng) acts in the Golgi to determine the type of O-linked fucose on the EGF modules in N, altering the ability of N to bind with Delta (Dl). O-fut1 also has a role in modulating the interaction.

Drosophila melanogaster (taxid: 7227)

>sp|Q8UWJ4|DLLD_DANRE Delta-like protein D OS=Danio rerio GN=dld PE=1 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 54/83 (65%)

Query: 51  LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
           LISR+TTQR L VG  W++D      + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct: 141 LISRMTTQRHLTVGEEWSQDLQVGGRTELKYSYRFVCDEHYYGEGCSVFCRPRDDTFGHF 200

Query: 111 TCSHTGDRKCLPGWSGDYCTKAV 133
           TC   G+  C  GW G YCT+ +
Sbjct: 201 TCGERGEIICNSGWKGQYCTEPI 223

Acts as a ligand for Notch receptors and is involved in primary neurogenesis and somitogenesis. Can activate Notch receptors, thereby playing a key role in lateral inhibition, a process that prevents the immediate neighbors of each nascent neural cell from simultaneously embarking on neural differentiation. Required in somite segmentation to keep the oscillations of neighboring presomitic mesoderm cells synchronized.

Danio rerio (taxid: 7955)

>sp|Q6DI48|DLLA_DANRE Delta-like protein A OS=Danio rerio GN=dla PE=1 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%)

Query: 51  LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
           +IS +TTQR L VG  W++D H    + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct: 145 IISTMTTQRHLTVGEDWSQDLHSVGRTELKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 204

Query: 111 TCSHTGDRKCLPGWSGDYCTKAV 133
           TC   G+  C  GW G YCT+ +
Sbjct: 205 TCGERGEIICDAGWKGQYCTEPI 227

Acts as a ligand for Notch receptors and is involved in primary neurogenesis. Can activate Notch receptors, thereby playing a key role in lateral inhibition, a process that prevents the immediate neighbors of each nascent neural cell from simultaneously embarking on neural differentiation. Required for boundary formation during segmentation of the hindbrain. Required for midline cell fate specification prior to germ layer formation; regulates specification of floorplate, notochord and hypochord. In inner ear, it prevents adjacent cells from adopting the same cell fate.

Danio rerio (taxid: 7955)

>sp|Q9IAT6|DLLC_DANRE Delta-like protein C OS=Danio rerio GN=dlc PE=2 SV=1

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query: 51  LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
           +ISRL T+R L +   W++D H    S + + YRV CD  Y+G  C+  CRPR+D+FGH+
Sbjct: 120 MISRLATKRRLAISEDWSQDVHLGRQSQLRFSYRVVCDEFYHGEECSDFCRPRNDTFGHF 179

Query: 111 TCSHTGDRKCLPGWSGDYCTKAV 133
            C   G+R CLPGW GDYCT+ +
Sbjct: 180 NCDAAGNRICLPGWKGDYCTEPI 202

Acts as a ligand for Notch receptors and is involved in somitogenesis. Can activate Notch receptors. Required in somite segmentation to keep the oscillations of neighboring presomitic mesoderm cells synchronized.

Danio rerio (taxid: 7955)

>sp|O57409|DLLB_DANRE Delta-like protein B OS=Danio rerio GN=dlb PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%)

Query: 51  LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
           LISRL T+R L VG  W++D H    S + Y Y V CD  Y+G  C+  CRPRDD+ GHY
Sbjct: 125 LISRLATRRRLAVGEDWSQDVHFGDQSELRYSYHVFCDEFYFGEACSDYCRPRDDTLGHY 184

Query: 111 TCSHTGDRKCLPGWSGDYCTKAV 133
           TC   G+++CL GW GDYC+  +
Sbjct: 185 TCDENGNKECLVGWQGDYCSDPI 207

Acts as a ligand for Notch receptors and is involved in primary neurogenesis. Can activate Notch receptors, thereby playing a key role in lateral inhibition, a process that prevents the immediate neighbors of each nascent neural cell from simultaneously embarking on neural differentiation.

Danio rerio (taxid: 7955)

>sp|Q9NR61|DLL4_HUMAN Delta-like protein 4 OS=Homo sapiens GN=DLL4 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query: 50  TLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGH 109
            LIS++  Q  L VG +W  DE  S  + + Y YRV C  +YYG+ C+ LC+ R+D FGH
Sbjct: 138 ALISKIAIQGSLAVGQNWLLDEQTSTLTRLRYSYRVICSDNYYGDNCSRLCKKRNDHFGH 197

Query: 110 YTCSHTGDRKCLPGWSGDYCTKAV 133
           Y C   G+  CLPGW+G+YC + +
Sbjct: 198 YVCQPDGNLSCLPGWTGEYCQQPI 221

Plays a role in the Notch signaling pathway. Activates Notch-1 and Notch-4.

Homo sapiens (taxid: 9606)

>sp|Q90Y57|JAG1A_DANRE Protein jagged-1a OS=Danio rerio GN=jag1a PE=2 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 48/85 (56%)

Query: 51  LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
           +I +      ++    W   +H    +   Y+ RVTCD HY+G GC   CRPRDD FGHY
Sbjct: 152 VIEKAVQSGMINPNRQWQVLKHNGPVAQFQYQIRVTCDEHYFGFGCNKFCRPRDDFFGHY 211

Query: 111 TCSHTGDRKCLPGWSGDYCTKAVQK 135
           TC H G++ CL GW+G  C  A+ K
Sbjct: 212 TCDHNGNKTCLEGWAGPECNTAICK 236

Ligand for multiple Notch receptors and involved in the mediation of Notch signaling (By similarity). Seems to be involved in cell-fate decisions.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
208972117	858	Delta protein [Periplaneta americana]	0.5	0.096	0.795	2e-33
383848693	863	PREDICTED: neurogenic locus protein delt	0.487	0.093	0.753	7e-32
328787266	892	PREDICTED: neurogenic locus protein delt	0.487	0.090	0.740	1e-31
350408086	924	PREDICTED: LOW QUALITY PROTEIN: neurogen	0.487	0.087	0.728	2e-31
380030890	83	PREDICTED: neurogenic locus protein delt	0.487	0.975	0.740	4e-31
340721886	919	PREDICTED: neurogenic locus protein delt	0.487	0.088	0.716	5e-31
322786495	87	hypothetical protein SINV_03001 [Solenop	0.487	0.931	0.703	4e-28
189233683	778	PREDICTED: similar to Delta [Tribolium c	0.5	0.106	0.674	4e-28
270014506	775	hypothetical protein TcasGA2_TC004114 [T	0.493	0.105	0.682	6e-28
354684016	542	Delta protein, partial [Gryllus bimacula	0.5	0.153	0.662	7e-27

>gi|208972117|gb|ACI32657.1| Delta protein [Periplaneta americana]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 71/83 (85%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           +TLI+RLTTQRWLDVG  WTEDEH+S+HS M YEYRVTCD HYYG GCA LCRPRDD+FG
Sbjct: 148 ETLITRLTTQRWLDVGEDWTEDEHRSSHSVMRYEYRVTCDAHYYGAGCANLCRPRDDNFG 207

Query: 109 HYTCSHTGDRKCLPGWSGDYCTK 131
           HY CS TGDR CL GW GDYCTK
Sbjct: 208 HYKCSATGDRVCLSGWQGDYCTK 230

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848693|ref|XP_003699982.1| PREDICTED: neurogenic locus protein delta-like [Megachile rotundata]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 69/81 (85%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI+RLTTQ+WLDVGP+WTEDE++SAHS M+YEYRVTC  HYYG GC  LCRPRDD+FG
Sbjct: 144 KVLITRLTTQKWLDVGPNWTEDEYRSAHSKMVYEYRVTCVAHYYGKGCENLCRPRDDNFG 203

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS TG R CL GW GDYC
Sbjct: 204 HYSCSPTGQRVCLSGWKGDYC 224

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787266|ref|XP_393831.4| PREDICTED: neurogenic locus protein delta [Apis mellifera]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 70/81 (86%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI+RLTTQ+WLDVGP+WTEDE++SAHS M+YEYRVTC  HYYG GC  LCRPRDD+FG
Sbjct: 144 KVLITRLTTQKWLDVGPNWTEDEYRSAHSKMVYEYRVTCVAHYYGKGCENLCRPRDDNFG 203

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS +G+R CL GW GDYC
Sbjct: 204 HYSCSPSGERVCLSGWKGDYC 224

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408086|ref|XP_003488297.1| PREDICTED: LOW QUALITY PROTEIN: neurogenic locus protein delta-like [Bombus impatiens]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 70/81 (86%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI+RLTTQ+WLDVGP+WTEDE++SAH+ M+YEYRVTC  HYYG GC  LCRPRDD+FG
Sbjct: 144 KVLITRLTTQKWLDVGPNWTEDEYRSAHAKMVYEYRVTCVAHYYGKGCENLCRPRDDNFG 203

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS +G+R CL GW GDYC
Sbjct: 204 HYSCSPSGERVCLSGWKGDYC 224

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030890|ref|XP_003699072.1| PREDICTED: neurogenic locus protein delta-like, partial [Apis florea]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 70/81 (86%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI+RLTTQ+WLDVGP+WTEDE++SAHS M+YEYRVTC  HYYG GC  LCRPRDD+FG
Sbjct: 1   KVLITRLTTQKWLDVGPNWTEDEYRSAHSKMVYEYRVTCVAHYYGKGCENLCRPRDDNFG 60

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS +G+R CL GW GDYC
Sbjct: 61  HYSCSPSGERVCLSGWKGDYC 81

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721886|ref|XP_003399344.1| PREDICTED: neurogenic locus protein delta-like [Bombus terrestris]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 70/81 (86%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI+RLTTQ+WLDVGP+WTEDE++SAH+ M++EYRVTC  HYYG GC  LCRPRDD+FG
Sbjct: 144 KVLITRLTTQKWLDVGPNWTEDEYRSAHAKMVFEYRVTCVAHYYGKGCENLCRPRDDNFG 203

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS +G+R CL GW GDYC
Sbjct: 204 HYSCSPSGERVCLSGWKGDYC 224

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786495|gb|EFZ12940.1| hypothetical protein SINV_03001 [Solenopsis invicta]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           K LI RLTTQ+WLDVGP WT D++ SAHS + +EYRVTC PHYYG GC  LCRPRDD+FG
Sbjct: 2   KILIMRLTTQKWLDVGPEWTADDYTSAHSQIDFEYRVTCAPHYYGKGCEDLCRPRDDNFG 61

Query: 109 HYTCSHTGDRKCLPGWSGDYC 129
           HY+CS +G+R CL GW GDYC
Sbjct: 62  HYSCSPSGERVCLTGWKGDYC 82

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233683|ref|XP_970087.2| PREDICTED: similar to Delta [Tribolium castaneum]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 65/83 (78%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           + L+SRLT QRWLDV   WTED H S +S++ +EYRVTC  HYYG GC  LCRPRDD FG
Sbjct: 137 RLLVSRLTRQRWLDVSDKWTEDVHSSNYSTLKFEYRVTCKSHYYGKGCENLCRPRDDQFG 196

Query: 109 HYTCSHTGDRKCLPGWSGDYCTK 131
           HY+CS TG+R CL GW+GDYCTK
Sbjct: 197 HYSCSPTGERVCLAGWTGDYCTK 219

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014506|gb|EFA10954.1| hypothetical protein TcasGA2_TC004114 [Tribolium castaneum]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 64/82 (78%)

Query: 50  TLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGH 109
            L+SRLT QRWLDV   WTED H S +S++ +EYRVTC  HYYG GC  LCRPRDD FGH
Sbjct: 135 VLVSRLTRQRWLDVSDKWTEDVHSSNYSTLKFEYRVTCKSHYYGKGCENLCRPRDDQFGH 194

Query: 110 YTCSHTGDRKCLPGWSGDYCTK 131
           Y+CS TG+R CL GW+GDYCTK
Sbjct: 195 YSCSPTGERVCLAGWTGDYCTK 216

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354684016|gb|AER35117.1| Delta protein, partial [Gryllus bimaculatus]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 65/83 (78%)

Query: 49  KTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFG 108
           +TLISRLT QRWL+V  +WT  EHK+ H+ M  E+RVTCD HYYG GCA+LCRPRDD FG
Sbjct: 18  ETLISRLTMQRWLEVDKNWTPHEHKTEHTVMSLEFRVTCDEHYYGTGCASLCRPRDDRFG 77

Query: 109 HYTCSHTGDRKCLPGWSGDYCTK 131
           HY CS  G+R CL GW GDYC++
Sbjct: 78  HYKCSPEGERVCLSGWKGDYCSE 100

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
RGD|70949	714	Dll1 "delta-like 1 (Drosophila	0.5	0.116	0.566	1.8e-25
UNIPROTKB|P97677	714	Dll1 "Delta-like protein 1" [R	0.5	0.116	0.566	1.8e-25
MGI|MGI:104659	722	Dll1 "delta-like 1 (Drosophila	0.5	0.114	0.566	2.4e-25
UNIPROTKB|F1PNN6	689	DLL1 "Delta-like protein" [Can	0.5	0.120	0.554	3.5e-25
UNIPROTKB|I3LNT3	722	DLL1 "Delta-like protein" [Sus	0.5	0.114	0.554	3.9e-25
UNIPROTKB|O00548	723	DLL1 "Delta-like protein 1" [H	0.5	0.114	0.554	5e-25
UNIPROTKB|F1NRS3	728	DLL1 "Delta-like protein" [Gal	0.5	0.114	0.554	5.1e-25
UNIPROTKB|E1BN18	722	DLL1 "Delta-like protein" [Bos	0.5	0.114	0.542	1.3e-24
FB|FBgn0000463	833	Dl "Delta" [Drosophila melanog	0.716	0.142	0.450	5.7e-23
ZFIN|ZDB-GENE-990415-47	717	dld "deltaD" [Danio rerio (tax	0.5	0.115	0.518	1.9e-22

RGD|70949 Dll1 "delta-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 47/83 (56%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRLTTQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   142 LISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 201

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT  +
Sbjct:   202 TCGERGEKMCDPGWKGQYCTDPI 224

GO:0001709 "cell fate determination" evidence=TAS

GO:0001756 "somitogenesis" evidence=ISO

GO:0001757 "somite specification" evidence=IEA;ISO

GO:0001947 "heart looping" evidence=IEA;ISO

GO:0005112 "Notch binding" evidence=IEA;ISO;TAS;IPI

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO;TAS

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO;NAS

GO:0007267 "cell-cell signaling" evidence=IEA;ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0007386 "compartment pattern specification" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=NAS

GO:0009912 "auditory receptor cell fate commitment" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0045596 "negative regulation of cell differentiation" evidence=ISO

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA;ISO

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA;ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048839 "inner ear development" evidence=IEA;ISO

GO:0050767 "regulation of neurogenesis" evidence=ISO

GO:0070986 "left/right axis specification" evidence=IEA;ISO

GO:0072014 "proximal tubule development" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA;ISO

UNIPROTKB|P97677 Dll1 "Delta-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 47/83 (56%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRLTTQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   142 LISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 201

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT  +
Sbjct:   202 TCGERGEKMCDPGWKGQYCTDPI 224

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:104659 Dll1 "delta-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 47/83 (56%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRLTTQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   142 LISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 201

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT  +
Sbjct:   202 TCGDRGEKMCDPGWKGQYCTDPI 224

GO:0001701 "in utero embryonic development" evidence=NAS

GO:0001756 "somitogenesis" evidence=IGI

GO:0001757 "somite specification" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0005112 "Notch binding" evidence=ISO;IPI

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007154 "cell communication" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=ISO;TAS

GO:0007267 "cell-cell signaling" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0007386 "compartment pattern specification" evidence=IMP

GO:0007399 "nervous system development" evidence=NAS

GO:0009887 "organ morphogenesis" evidence=NAS

GO:0009912 "auditory receptor cell fate commitment" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0042472 "inner ear morphogenesis" evidence=NAS

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=NAS

GO:0042491 "auditory receptor cell differentiation" evidence=NAS

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IMP

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IDA

GO:0045665 "negative regulation of neuron differentiation" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0048839 "inner ear development" evidence=IMP

GO:0050767 "regulation of neurogenesis" evidence=IMP

GO:0061314 "Notch signaling involved in heart development" evidence=IC

GO:0070986 "left/right axis specification" evidence=IMP

UNIPROTKB|F1PNN6 DLL1 "Delta-like protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 3.5e-25, P = 3.5e-25
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRL TQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   104 LISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 163

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT+ +
Sbjct:   164 TCGERGEKVCNPGWKGQYCTEPI 186

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|I3LNT3 DLL1 "Delta-like protein" [Sus scrofa (taxid:9823)]

 Score = 295 (108.9 bits), Expect = 3.9e-25, P = 3.9e-25
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRL TQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   143 LISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 202

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT+ +
Sbjct:   203 TCGERGEKVCNPGWKGQYCTEPI 225

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O00548 DLL1 "Delta-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 5.0e-25, P = 5.0e-25
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRL TQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   143 LISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 202

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT+ +
Sbjct:   203 TCGERGEKVCNPGWKGPYCTEPI 225

GO:0005509 "calcium ion binding" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0005112 "Notch binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007219 "Notch signaling pathway" evidence=IMP;NAS;TAS

GO:0001709 "cell fate determination" evidence=NAS

GO:0030097 "hemopoiesis" evidence=NAS

GO:0030154 "cell differentiation" evidence=TAS

GO:0030155 "regulation of cell adhesion" evidence=TAS

GO:0005576 "extracellular region" evidence=NAS

GO:0097150 "neuronal stem cell maintenance" evidence=IEP

GO:0005886 "plasma membrane" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0007368 "determination of left/right symmetry" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

UNIPROTKB|F1NRS3 DLL1 "Delta-like protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 5.1e-25, P = 5.1e-25
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRL TQR L VG  W++D H S  + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   150 LISRLATQRHLAVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHF 209

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT+ +
Sbjct:   210 TCGERGEKVCNPGWKGQYCTEPI 232

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

UNIPROTKB|E1BN18 DLL1 "Delta-like protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 45/83 (54%), Positives = 57/83 (68%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISRL TQR L VG  W++D H S  + + Y YR  CD HY+G GC+  CRPRDD+FGH+
Sbjct:   143 LISRLATQRHLAVGEEWSQDLHSSGRTDLKYSYRFVCDEHYFGEGCSVFCRPRDDAFGHF 202

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G++ C PGW G YCT+ +
Sbjct:   203 TCGERGEKVCNPGWKGQYCTEPI 225

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0000463 Dl "Delta" [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 5.7e-23, P = 5.7e-23
 Identities = 59/131 (45%), Positives = 77/131 (58%)

Query:    47 TCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDS 106
             T K LI RL  Q+ L+V   W  ++ +S ++S+ Y++RVTCD +YYG+GCA  CRPRDDS
Sbjct:   144 TNKLLIQRLLVQQVLEVSSEWKTNKSESQYTSLEYDFRVTCDLNYYGSGCAKFCRPRDDS 203

Query:   107 FGHYTCSHTGDRKCLPGWSGDYC--TKAVQKLSPTKA-LPNRTSRTLF--------CVLE 155
             FGH TCS TG+  CL GW GDYC   K  +         PN+    L         CVLE
Sbjct:   204 FGHSTCSETGEIICLTGWQGDYCHIPKCAKGCEHGHCDKPNQCVCQLGWKGALCNECVLE 263

Query:   156 PSMQLYGNCAK 166
             P+  ++G C K
Sbjct:   264 PNC-IHGTCNK 273

GO:0005112 "Notch binding" evidence=NAS;IDA;TAS;IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007398 "ectoderm development" evidence=NAS;TAS

GO:0007498 "mesoderm development" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IGI;IMP;NAS;TAS

GO:0007422 "peripheral nervous system development" evidence=IMP;TAS

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP;TAS

GO:0001708 "cell fate specification" evidence=TAS

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0007417 "central nervous system development" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS;TAS

GO:0007424 "open tracheal system development" evidence=NAS

GO:0035155 "negative regulation of terminal cell fate specification, open tracheal system" evidence=NAS

GO:0035157 "negative regulation of fusion cell fate specification" evidence=NAS

GO:0048749 "compound eye development" evidence=TAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007460 "R8 cell fate commitment" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP;TAS

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=TAS

GO:0045465 "R8 cell differentiation" evidence=NAS

GO:0045468 "regulation of R8 cell spacing in compound eye" evidence=NAS

GO:0046667 "compound eye retinal cell programmed cell death" evidence=TAS

GO:0016318 "ommatidial rotation" evidence=NAS

GO:0046331 "lateral inhibition" evidence=IMP;NAS;TAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=TAS

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0001736 "establishment of planar polarity" evidence=NAS

GO:0007464 "R3/R4 cell fate commitment" evidence=NAS

GO:0007474 "imaginal disc-derived wing vein specification" evidence=NAS

GO:0007419 "ventral cord development" evidence=NAS

GO:0005102 "receptor binding" evidence=NAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=TAS

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=TAS

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=IMP

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0035003 "subapical complex" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

ZFIN|ZDB-GENE-990415-47 dld "deltaD" [Danio rerio (taxid:7955)]

 Score = 270 (100.1 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 43/83 (51%), Positives = 54/83 (65%)

Query:    51 LISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHY 110
             LISR+TTQR L VG  W++D      + + Y YR  CD HYYG GC+  CRPRDD+FGH+
Sbjct:   141 LISRMTTQRHLTVGEEWSQDLQVGGRTELKYSYRFVCDEHYYGEGCSVFCRPRDDTFGHF 200

Query:   111 TCSHTGDRKCLPGWSGDYCTKAV 133
             TC   G+  C  GW G YCT+ +
Sbjct:   201 TCGERGEIICNSGWKGQYCTEPI 223

GO:0007154 "cell communication" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IGI;IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0021523 "somatic motor neuron differentiation" evidence=IMP

GO:0030165 "PDZ domain binding" evidence=IMP;IDA;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IGI;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0007368 "determination of left/right symmetry" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046331 "lateral inhibition" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0003140 "determination of left/right asymmetry in lateral mesoderm" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00548	DLL1_HUMAN	No assigned EC number	0.5104	0.5783	0.1327	yes	N/A
Q61483	DLL1_MOUSE	No assigned EC number	0.5208	0.5783	0.1329	yes	N/A
P97677	DLL1_RAT	No assigned EC number	0.5208	0.5783	0.1344	yes	N/A
Q8UWJ4	DLLD_DANRE	No assigned EC number	0.5180	0.5	0.1157	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	166
pfam01414	63	pfam01414, DSL, Delta serrate ligand	4e-24
smart00051	63	smart00051, DSL, delta serrate ligand	8e-22
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	4e-08
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	5e-08
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-08
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-07
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-07
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-07
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-07
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-07
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	6e-07
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	7e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	9e-07
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-06
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-06
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	1e-06
pfam02724	583	pfam02724, CDC45, CDC45-like protein	1e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-06
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	2e-06
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	3e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-06
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-06
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-06
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	3e-06
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	3e-06
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	4e-06
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	4e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	4e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	5e-06
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-06
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	7e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	7e-06
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	7e-06
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	7e-06
PHA02608	80	PHA02608, 67, prohead core protein; Provisional	7e-06
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	7e-06
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	8e-06
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	8e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	9e-06
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	9e-06
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	9e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-05
pfam02724	583	pfam02724, CDC45, CDC45-like protein	1e-05
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	1e-05
PRK02363	129	PRK02363, PRK02363, DNA-directed RNA polymerase su	1e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	2e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	2e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	2e-05
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	2e-05
PRK02363	129	PRK02363, PRK02363, DNA-directed RNA polymerase su	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	2e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-05
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	3e-05
pfam02724	583	pfam02724, CDC45, CDC45-like protein	3e-05
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	3e-05
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	3e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-05
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	4e-05
pfam02724	583	pfam02724, CDC45, CDC45-like protein	4e-05
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	4e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	4e-05
pfam04281	136	pfam04281, Tom22, Mitochondrial import receptor su	4e-05
pfam05285	317	pfam05285, SDA1, SDA1	4e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	5e-05
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	5e-05
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	5e-05
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	5e-05
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	5e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	5e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-05
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	7e-05
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	7e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	7e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-05
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	8e-05
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	1e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	1e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	1e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-04
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	1e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	1e-04
pfam13324	271	pfam13324, GCIP, Grap2 and cyclin-D-interacting	1e-04
pfam04615	728	pfam04615, Utp14, Utp14 protein	1e-04
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	1e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	2e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	2e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	2e-04
pfam07093	557	pfam07093, SGT1, SGT1 protein	2e-04
PLN00151	852	PLN00151, PLN00151, potassium transporter; Provisi	2e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-04
pfam09026	101	pfam09026, Cenp-B_dimeris, Centromere protein B di	2e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	3e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	3e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	3e-04
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	3e-04
pfam08595	141	pfam08595, RXT2_N, RXT2-like, N-terminal	3e-04
pfam04281	136	pfam04281, Tom22, Mitochondrial import receptor su	3e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	3e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	3e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	3e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	3e-04
smart00017	287	smart00017, OSTEO, Osteopontin	3e-04
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	4e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	4e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam05285	317	pfam05285, SDA1, SDA1	4e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	4e-04
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	5e-04
smart00017	287	smart00017, OSTEO, Osteopontin	5e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	5e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-04
PRK02363	129	PRK02363, PRK02363, DNA-directed RNA polymerase su	6e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	6e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	6e-04
pfam04281	136	pfam04281, Tom22, Mitochondrial import receptor su	7e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	8e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	8e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.001
PRK02363	129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.001
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.001
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam04281	136	pfam04281, Tom22, Mitochondrial import receptor su	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.002
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	0.002
PRK05657	325	PRK05657, PRK05657, RNA polymerase sigma factor Rp	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.003
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.003
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.003
smart00017	287	smart00017, OSTEO, Osteopontin	0.003
smart00017	287	smart00017, OSTEO, Osteopontin	0.003
PHA03346	520	PHA03346, PHA03346, US22 family homolog; Provision	0.003
pfam03986	146	pfam03986, Autophagy_N, Autophagocytosis associate	0.003
cd13394	597	cd13394, Syo1_like, Fungal symportin 1 (syo1) and	0.003
cd13394	597	cd13394, Syo1_like, Fungal symportin 1 (syo1) and	0.003
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	0.003
COG3416	233	COG3416, COG3416, Uncharacterized protein conserve	0.003
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	0.004
pfam11702	509	pfam11702, DUF3295, Protein of unknown function (D	0.004
pfam11702	509	pfam11702, DUF3295, Protein of unknown function (D	0.004
pfam11702	509	pfam11702, DUF3295, Protein of unknown function (D	0.004
pfam05086	910	pfam05086, Dicty_REP, Dictyostelium (Slime Mold) R	0.004
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.004
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004

>gnl|CDD|144855 pfam01414, DSL, Delta serrate ligand

 Score = 89.0 bits (221), Expect = 4e-24
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query: 67  WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSG 126
           W+ D H    +++ Y+ RVTCD +YYG GC   CRPRDD FGHYTC   G+++CL GW G
Sbjct: 1   WSTDLHIVGRTNLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKRCLNGWMG 60

Query: 127 DYC 129
            YC
Sbjct: 61  PYC 63

Length = 63

>gnl|CDD|128366 smart00051, DSL, delta serrate ligand

 Score = 82.8 bits (205), Expect = 8e-22
 Identities = 34/63 (53%), Positives = 41/63 (65%)

Query: 67  WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSG 126
           W+ D H    + + Y+ RVTCD +YYG GC   CRPRDD FGHYTC   G++ CL GW G
Sbjct: 1   WSTDLHIGGRTFLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMG 60

Query: 127 DYC 129
            YC
Sbjct: 61  PYC 63

Length = 63

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             D  N+D DD D   D D  DDD DDDD +D+ 
Sbjct: 111 EEDARNSDADDSDSSSDSDSSDDDSDDDDSEDET 144

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           M DD + +  ++ +++DDDD DDD D+DDD+  EVI
Sbjct: 352 MWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVI 387

Length = 390

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
            DDD +DDD DDDDDD+DDD+DDDDDD DD+DE   
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173

Length = 509

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 1   MMMVDGEWWMADDDNNDDDDDDDD-----DDDDDDDDDDDDDDDDDDEVIITC 48
           +  +DG     + D +DDDDD+D      DD DDD  D+D +D  D + ++ C
Sbjct: 241 IAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDNVMLC 293

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D +    DDD+ DDDD DDDDDD+DDD+DDDDDD DD++
Sbjct: 131 DDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 24/32 (75%), Positives = 30/32 (93%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          DDD  DDDDDDD+D+DDDDDDDD+DD+D+DD+
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 23/32 (71%), Positives = 30/32 (93%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           DD+ +DDDDDD+D+DDDDDDDD+DD+D+DDD
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 21/34 (61%), Positives = 31/34 (91%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           ++D++DDDD+D+DDDDDDDD+DD+D+DDDD  +
Sbjct: 56 DEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          A      + + D++D +DDDDDD+D+D+DD++E
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEE 70

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 20/35 (57%), Positives = 28/35 (80%)

Query: 9   WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            + DDD +DDDDD+DDD+DDDDDD DD+D++  + 
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA 175

Length = 509

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +D +   + D+++DD D  D  D    D + D D +++D+
Sbjct: 280 IDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDD 319

Length = 337

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 22/35 (62%), Positives = 32/35 (91%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           D++++DDDDD+D+DDDDDDDD+DD+D+DDDD  +
Sbjct: 55 DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
             DD ++DD DDDDDD+DDD+DDDDDD DD+D+E  
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173

Length = 509

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 10/32 (31%), Positives = 23/32 (71%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          D++   ++++++++ D D DD +DD+ + DDE
Sbjct: 40 DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDE 71

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 9/32 (28%), Positives = 23/32 (71%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          ++   ++++++++ D D DD +DD+ + DD+E
Sbjct: 41 EEFEIEEEEEEEEVDSDFDDSEDDEPESDDEE 72

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 25/28 (89%)

Query: 16  NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            +D+ DDD++D++++DD++DDD+D+ +E
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEE 137

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
            DDD+ + D++D++    +DD+DDDDDDDDDD    
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            DDD++ DDDD DDDDDD+DDD+DDDDDD DDE 
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169

Length = 509

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 3/35 (8%)

Query: 12 DDD---NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          DD+     +++++++ D D DD +DD+ + DD++E
Sbjct: 39 DDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEE 73

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
           V+  W    DD + +  ++ +++DDDD DDD D+DDD+   +I
Sbjct: 349 VEFMW----DDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVI 387

Length = 390

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 26/33 (78%), Positives = 31/33 (93%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           DDD++DDDD DDDD DDDDDD+DDD+DDDDD+V
Sbjct: 133 DDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 22/32 (68%), Positives = 31/32 (96%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          +DD+ +DDDDDDD+D+DDDDDDDD+DD+D+D+
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDD 84

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 32/33 (96%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
          M ++D++++DDDDDDD+D+DDDDDDDD+DD+D+
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 31/33 (93%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          A ++ +DD++DDDDDDD+D+DDDDDDDD+DD++
Sbjct: 49 AMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 4  VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          +D     A       + + D++D +DDDDDD+D+D+DD+E
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEE 69

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 12/29 (41%), Positives = 25/29 (86%)

Query: 17  DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           D+ DDD++D++++DD++DDD+D+ ++E  
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           A + + DD D   D D  DDD DDDD +D+   
Sbjct: 114 ARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 21/32 (65%), Positives = 32/32 (100%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          +++++D++DDDDDDD+D+DDDDDDDD+DD+DE
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          A     + + D++D +DDDDDD+D+D+DD+++ 
Sbjct: 39 ATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 13/29 (44%), Positives = 23/29 (79%)

Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
          + D++D +DDDDDD+D+D+DD+++ D   
Sbjct: 47 ELDEEDLEDDDDDDEDEDEDDEEEADLGP 75

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 12/27 (44%), Positives = 23/27 (85%)

Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           + D++D +DDDDDD+D+D+DD+++ +
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEAD 72

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             DDD   D++D++    +DD+DDDDDDDDDD  
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIA 159

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             DDD++DDDDD DDDD DDDDDD+DDD+DDDD+
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD++D+DDD+DDDDDD DD+D++  +  + E
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELE 179

Length = 509

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            ++D  + D DD D   D D  DDD DDDD ++
Sbjct: 110 IEEDARNSDADDSDSSSDSDSSDDDSDDDDSED 142

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          A  ++  D++D +DDDDDD+D+D+DD+++ D  
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 7   EWWM--ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            W++  A D+++D   D+DDDD D  D  D    D + +V
Sbjct: 273 YWFLGEAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDV 312

Length = 337

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D ++   +DD++ D  D  D    D + D D +++DD  
Sbjct: 283 DSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRG 321

Length = 337

>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 23/32 (71%), Positives = 29/32 (90%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          + +++DDD+DDDDDDD DD DDDDDDDD+DDE
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80

Length = 80

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 17/30 (56%), Positives = 18/30 (60%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
            D  +N DDDD    D   DDDD DDDDDD
Sbjct: 204 GDQGSNGDDDDGGFADSGYDDDDMDDDDDD 233

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 12/38 (31%), Positives = 31/38 (81%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
           + G+  +A +++  DDD++D++++DD++DDD+D+ +++
Sbjct: 101 ISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           A  D   + DDDD    D   DDDD DDDDDD
Sbjct: 202 AGGDQGSNGDDDDGGFADSGYDDDDMDDDDDD 233

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
          ++ D  D +DDDDDD+D+D+DD+++ D   D E 
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 14/31 (45%), Positives = 24/31 (77%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
           A +   D++D +DDDDDD+D+D+DD+++ D
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           +D    D   + DDDD    D   DDDD DDD
Sbjct: 199 SDAAGGDQGSNGDDDDGGFADSGYDDDDMDDD 230

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 24/33 (72%), Positives = 26/33 (78%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            D  N  DDDDDDDDDDD DDDD DDDDDD+D+
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDD 156

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D +    DD ++DDDD+DDD+DDDDDD DD+D++  + +
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
           DDD++++ D++D++    +DD+DDDDDDDDD++    ++L  R   + W
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREW 174

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 13  DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
           DD +D++++    D+DDDD+DD  D DDDDE    
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESD 257

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           M  DD+  DDD   DDD D++D D++DD+D++DE
Sbjct: 95  MDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128

Length = 129

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/32 (68%), Positives = 28/32 (87%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +  ++DDDDDDDDD DDDD DDDDDD+DDD++
Sbjct: 128 NQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             D++DDDDDDDD DDDD DDDDDD+DDD+D+
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDD 160

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 27/33 (81%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           DDD+++DDD+DDDDDD DD+D++  +  + +++
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 25/34 (73%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
              D  N  DDDDDDDDDDD DDDD DDDDDD++
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDED 155

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 27/28 (96%)

Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
          +DDD++DDDDDDD+D+DDDDDDDD+D+ 
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDE 80

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          D E    DDD+ D+DDDDDDDD+DD+D+DDDD    DD 
Sbjct: 55 DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          DDD ++DDDDDDDD+DD+D+DDDD    DD  
Sbjct: 63 DDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSS 94

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
            + + +D +DDDDDD+D+D+DD+++ D   D
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DDD  DDD   DDD D++D D++DD+D++D+E
Sbjct: 98  DDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129

Length = 129

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 26/32 (81%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DDD  ++++D D  D+++D++D+D DD+DD+E
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 26/34 (76%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
              DD +++DDDDD +++++D D  D+++D++DE
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDE 361

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 6/40 (15%)

Query: 11  ADDDNNDDDDD------DDDDDDDDDDDDDDDDDDDDDEV 44
            D+D  DDDDD      D D  D+++D++D+D DD+DDE 
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 10/53 (18%)

Query: 3   MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDD----------DDDDDDDDEVI 45
           + + +    +++  ++++D+D DDDDDDDDDD          +DDD DDDE +
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFDNGEDDDYDDDEAV 220

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D+D  D DDDD+DD+DD++ D +DDDE
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
          D+D  D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
              DD++DDDDDDD DDDD DDDDDD+DDD+DD+ 
Sbjct: 128 NQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDD 162

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DD++ DDDDDDDD+DD+D+DDDD    DD   
Sbjct: 63 DDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSA 95

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD+ D  D  D    D + D D +++DD  E
Sbjct: 290 EDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGE 322

Length = 337

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 27/32 (84%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           ++D++DD++ D++D++    +DD+DDDDDDD+
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDD 155

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           A   +   + DDDD    D   DDDD DDDDD
Sbjct: 201 AAGGDQGSNGDDDDGGFADSGYDDDDMDDDDD 232

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           V+ +  + D D+ +++    D+DDDD+DD  D DDDD++E 
Sbjct: 216 VEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEES 256

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
             +  +DDDDDDDDDD DDDD DDDDDD+DDDE 
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159

Length = 509

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 9/31 (29%), Positives = 21/31 (67%)

Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +  +++++ D D DD +DD+ + DD+++ E
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGE 75

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/35 (37%), Positives = 27/35 (77%)

Query: 9   WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +   ++++DDD++ D++D++    +DD+DDDDDD+
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDD 154

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
                +   + DDDD    D   DDDD DDDD
Sbjct: 200 DAAGGDQGSNGDDDDGGFADSGYDDDDMDDDD 231

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
          + D  D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           ++ DDDD+DD D D D  DD D ++E +
Sbjct: 24 QEESDDDDEDDTDTDSDISDDSDFENETL 52

The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins. The N terminal region of Tom22 has been shown to have chaperone-like activity, and the C terminal region faces the intermembrane face. Length = 136

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 23/39 (58%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           + E W  ++D + DD+ +  D + D + +  D +D++++
Sbjct: 100 EEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEK 138

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 24/34 (70%), Positives = 25/34 (73%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            D D  +  DDDDDDDDDDD DDDD DDDDDDE 
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDED 155

Length = 509

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
             D+ + +DDDDDD+D+D+DD+++ D   D +E  
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEAR 81

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DD ++ D  D    D + D D +++DD  + E
Sbjct: 293 DDYDSYDSSDSASSDSNSDVDTNEEDDRGEKE 324

Length = 337

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 8/39 (20%), Positives = 23/39 (58%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             +   +DD   + ++++++++ D D DD +DD+ + +
Sbjct: 31 YLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESD 69

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 7/32 (21%), Positives = 23/32 (71%)

Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
          ++ +D++ + ++++++++ D D DD +DD+  
Sbjct: 36 EEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPE 67

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 13/34 (38%), Positives = 26/34 (76%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            +D  +D+D++DDDDD +++++D D  D+++DE 
Sbjct: 326 EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEE 359

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
          D +  D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D +    DDD +DD+DDDDDD DD+D++  +  + +   
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182

Length = 509

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDD 33
           D      DDD    D   DDDD DDDDDD
Sbjct: 205 DQGSNGDDDDGGFADSGYDDDDMDDDDDD 233

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE----VIITCKTLISRL 55
           DD+  +    D+DDDD+DD  D DDDD+++ +       T K +  +L
Sbjct: 226 DDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKL 273

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           ++D  D DDDD+DD+DD++ D +DDD+
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
            +DD+ DDDDDD DD+D++  +  + +   DD+  
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDF 187

Length = 509

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 9  WMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
             D  + DDDD+DD+DD++ D +DDD++
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDEN 75

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             + +  + D DD D   D D  DDD DDDD 
Sbjct: 109 RIEEDARNSDADDSDSSSDSDSSDDDSDDDDS 140

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
              D +  +  DDDDDDDDDDD DDDD DDDD+ 
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDD 153

Length = 509

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          D +    +D+++DDDDDD+DD+D+DDDD    DD   D+
Sbjct: 59 DDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 26/43 (60%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
           ++  ++++ D D DD +DD+ + DD+++ ++ +   + L  +
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKK 87

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 23/34 (67%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
          D E+ + +++  ++ D D DD +DD+ + DD+++
Sbjct: 40 DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEE 73

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 6   GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           G     DDD++    D   + DDDD    D   DDDD
Sbjct: 190 GINNYGDDDSDAAGGDQGSNGDDDDGGFADSGYDDDD 226

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 26/32 (81%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           ++++  DD+D++DDDDD +++++D D  D++E
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
          D++  D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 27/33 (81%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           A+++  +DD  + +D+D++D+D+++++DDD+ +
Sbjct: 286 AEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318

Length = 319

>gnl|CDD|222046 pfam13324, GCIP, Grap2 and cyclin-D-interacting

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD------EVIITCKTLIS 53
               N+D +D   D   DDDD + DD +DD        EV   C  L+S
Sbjct: 147 EGCSNDDSEDPFSDGHHDDDDVEGDDLNDDRYWSEEEMEVAKPCLGLVS 195

GCIP, or Grap2 and cyclin-D-interacting protein, is found in eukaryotes, and in the human protein CCNDBP1, residues 149-190 constitute a helix-loop-helix domain, residues 190-240 an acidic region, and 240-261 a leucine zipper domain. GCIP interacts with full-length Grap2 protein and with the COOH-terminal unique and SH3 domains (designated QC domain) of Grap2. It is potentially involved in the regulation of cell differentiation and proliferation through Grap2 and cyclin D-mediated signalling pathways. In mice, it is involved in G1/S-phase progression of hepatocytes, which in older animals is associated with the development of liver tumours. In vitro it acts as an inhibitory HLH protein, for example, blocking transcription of the HNF-4 promoter. In its function as a cyclin D1-binding protein it is able to reduce CDK4-mediated phosphorylation of the retinoblastoma protein and to inhibit E2F-mediated transcriptional activity. GCIP has also been shown to have interact physically with Rad (Ras associated with diabetes), Rad being important in regulating cellular senescence. Length = 271

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 25/33 (75%)

Query: 13  DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
             + +D+D+D D +++D+DDD+DDDD ++  ++
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 25/36 (69%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
           +++ DD+  D+++ D  DD+ D++ D +++++ +T
Sbjct: 17 PEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 10/43 (23%)

Query: 12  DDDNNDDDD----------DDDDDDDDDDDDDDDDDDDDDDEV 44
           +D+ +DDDD           D+++D++D+D DD+DD+++++E 
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 26/31 (83%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           D D  D+ D++++++++++D+D DDDDDDDD
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
             ++DDDDDDDDD  D DDDD D DDDDDD + 
Sbjct: 66 VVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 23/34 (67%), Positives = 24/34 (70%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           DD   DDDDDDDDDDD  D DDDD D DDDD+ 
Sbjct: 63 EDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDD 96

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
          D   +DDDDDDDDDD  D DDDD D DDDDD+ + 
Sbjct: 65 DVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 1   MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           + + D E    D+D  DD DD D+DDD+DDD+D+D   D   E +
Sbjct: 470 LGLKDDEI---DNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEEL 511

This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression. Length = 557

>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 6  GEW-WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDV 63
          GE  W+   +++ +D    DDDDDD D      ++++D  +   + LI         DV
Sbjct: 25 GESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR--RRLIRTPPRVDSFDV 81

Length = 852

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 9    WMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
                D +++DDDD + DD +D+DD+DD+DDD
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%)

Query: 14   DNNDDDDDDDDDDDDDDDDDDDDDDDD 40
            D++ +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 31/34 (91%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           ++D++ D D+++DDDD+D++DDD+DDD+DDDEV
Sbjct: 8  GEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41

The centromere protein B (CENP-B) dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation. Length = 101

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           DDD++D DD+D++  +  + +   DDDD   +  
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192

Length = 509

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 11/24 (45%), Positives = 21/24 (87%)

Query: 22  DDDDDDDDDDDDDDDDDDDDDEVI 45
           +D+ DDD++D++++DD++DDDE  
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDE 134

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 28/39 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKT 50
           +++ + D  D+++D++D+D DD+DD++++++E     K 
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKK 382

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 29/34 (85%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            A+D + +D+ D++++++++++D+D DDDDDDD+
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 28/34 (82%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            + ++ D++D+ D++++++++++D+D DDDDD+ 
Sbjct: 163 LEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
          N    D+D  D DDDD+DD+DD++ D ++ 
Sbjct: 43 NPPRIDEDGGDIDDDDEDDEDDEEADAEDD 72

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
          NN    D+D  D DDDD+DD+DD++ D E 
Sbjct: 42 NNPPRIDEDGGDIDDDDEDDEDDEEADAED 71

The family represents the N-terminal region of RXT2-like proteins. In S. cerevisiae, RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth. A high throughput localisation study has localised RXT2 to the nucleus. Length = 141

>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           N   ++ DDDD+DD D D D  DD D E
Sbjct: 20 KNLAQEESDDDDEDDTDTDSDISDDSDFE 48

The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins. The N terminal region of Tom22 has been shown to have chaperone-like activity, and the C terminal region faces the intermembrane face. Length = 136

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 28/39 (71%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D E  +   +  +++DD  + +D+D++D+D+++++DDDE
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316

Length = 319

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD++DDD  D DDDD D DDDDDD  +DDD+
Sbjct: 71  DDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 16   NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
            +   +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 17   DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            D   +DDDD + DD +D+DD+DD+DD+
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          D+ DDDDDDD  DD D+D DD +D DD DE
Sbjct: 70 DDLDDDDDDDHVDDRDNDSDDAEDSDDSDE 99

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D D+ D  D    D + D D +++DD  + + 
Sbjct: 294 DYDSYDSSDSASSDSNSDVDTNEEDDRGEKES 325

Length = 337

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 8/29 (27%), Positives = 20/29 (68%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
           +++  +++ D D DD +DD+ + DD+++
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEE 73

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD-DDDDDE 43
          D  +W       ++DD++ + ++++++++ D D DD +D+
Sbjct: 25 DEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDD 64

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 25/33 (75%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            ++D  +++D  DD+D++DDDDD +++++D D 
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 11/41 (26%), Positives = 29/41 (70%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           D  + +   + ++++++D  DD+D++DDDDD +++++D  +
Sbjct: 311 DDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 25/32 (78%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +++ +  DD+D++DDDDD +++++D D  D+E
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEE 355

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           + EW   + + ++D DD+ +  D + D + +  D +D+E 
Sbjct: 101 EEEW---EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 14/27 (51%), Positives = 22/27 (81%)

Query: 15   NNDDDDDDDDDDDDDDDDDDDDDDDDD 41
            ++  +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +DG     D +  +D      + ++ DDD+D+++++D+++
Sbjct: 170 IDGF---VDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206

Length = 619

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
              DDN     D D +D +  +   ++  +   + I  
Sbjct: 352 FGSDDNEVRIIDKDGEDVELPEMSKEELAERILDEIAE 389

Length = 392

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 28/34 (82%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            ++++ D  D+++D++D+D DD+DD++++++++ 
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 11/45 (24%)

Query: 11  ADDDNNDDDDDDDD-----------DDDDDDDDDDDDDDDDDDEV 44
           ADD +++ + DDDD           ++++D  DD+D++DDDDD  
Sbjct: 299 ADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 10/32 (31%), Positives = 26/32 (81%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +++  DD  + +D+D++D+D+++++DDD+ D+
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             D D++DDDD  DD D+D DD +D DD D+ DE
Sbjct: 69  TDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDE 102

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
             D N ++D      + ++ DDD+D+++++DE 
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDEN 205

Length = 619

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DD+++D+DDDDDD DD+D++  +  + +   +
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183

Length = 509

>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
              D +DD  DDD   DDD D++D D++DD+DE
Sbjct: 93  KFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDE 125

Length = 129

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 26/40 (65%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            D +         +D+++++D  DD+D++DDDDD ++++E
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEE 347

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
           AD+D   D  D D +  DDD   + DDDDDD
Sbjct: 19 AADEDLYSDISDGDLEYSDDDSASESDDDDDD 50

Length = 357

>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDD 40
           + DDDD+DD D D D  DD D ++
Sbjct: 25 EESDDDDEDDTDTDSDISDDSDFEN 49

The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins. The N terminal region of Tom22 has been shown to have chaperone-like activity, and the C terminal region faces the intermembrane face. Length = 136

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             +DD++DD DD+D++  +  + +   DDDD   
Sbjct: 156 DDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189

Length = 509

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           D D    D   + DDDD    D   DDDD D
Sbjct: 198 DSDAAGGDQGSNGDDDDGGFADSGYDDDDMD 228

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 9   WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           +  DD +    D   + DDDD    D   DDDD 
Sbjct: 194 YGDDDSDAAGGDQGSNGDDDDGGFADSGYDDDDM 227

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD++ DD+D++  +  + +   DDDD   DE
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191

Length = 509

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDD-----DDDDDDEVI 45
                 D  D DD+ D  DDDDD+D      DD DDD   
Sbjct: 239 RTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSD 278

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD++DDD+DD+D+DDDD    DD   DD +E
Sbjct: 68  EDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/35 (42%), Positives = 27/35 (77%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
           +DG+  + DDD   DDD D++D D++DD+D++D++
Sbjct: 95  MDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129

Length = 129

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 5   DGEWWMADDDN--NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D E+   DDDN      ++D+++++D  DD+D++DDDDD E
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 13  DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            +   + DDDDD++++ + ++D+D DD+ + +
Sbjct: 88  AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 5  DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
          DGE      + ++DD+  D+++ D  DD+ D++ D ++E I 
Sbjct: 9  DGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIF 50

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           DD  +D++  ++D+DD+  D+++ D  DD++
Sbjct: 7  SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQ 38

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           +D+ ++DD   DDDDDDDDDDD  D DDDD ++
Sbjct: 57 DEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           D++ +D+DD   DDDDDDDDDDD  D DDD+V
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           D+D  D+DD   DDDDDDDDDDD  D DDDD
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          +  DD++DDDDDDD  D DDDD D DDDDDD  E
Sbjct: 66 VVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D D+ D++  +  + +   DDDD   D+DD E
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             DD N   D D  +  DDDDDDDDDDD DDDD 
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
            DDD N   D D  +  DDDDDDDDDDD DDD++  
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD 149

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 10/39 (25%)

Query: 16  NDDDDDDD----------DDDDDDDDDDDDDDDDDDDEV 44
            DDD+D+           + D DDD  DDDD DDDD   
Sbjct: 107 EDDDEDEFVLTHLGQSLSEIDKDDDVRDDDDFDDDDLGD 145

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 17  DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           + D DDD  DDDD DDDD  D   DD 
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDR 151

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 12/36 (33%), Positives = 27/36 (75%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
           D E    D D +D+++D++D+D DD+DD+++++++ 
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDD 37
          A ++++DDD+DD D D D  DD D ++
Sbjct: 23 AQEESDDDDEDDTDTDSDISDDSDFEN 49

The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins. The N terminal region of Tom22 has been shown to have chaperone-like activity, and the C terminal region faces the intermembrane face. Length = 136

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 10/37 (27%), Positives = 26/37 (70%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
           +DDD++++++ + ++D+D DD+ +  D + D E+  +
Sbjct: 94  SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 13  DDNNDDDDDDDDDDDDDD--DDDDDDDDDDDDEVI 45
               +   + DDDDD+++  + ++D+D DD+ E I
Sbjct: 85  KKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 13  DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            +     DD++    D D +D +  +   +E+
Sbjct: 348 SEIGFGSDDNEVRIIDKDGEDVELPEMSKEEL 379

Length = 392

>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDV 63
          M    ++ ++D D D++  +  D+    +++  +  +  + L+S+  TQR LD 
Sbjct: 1  MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDA 54

Length = 325

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
            DDD +D+D++  +  + +   DDDD   D+D+   
Sbjct: 161 DDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            DDD+ DD+D++  +  + +   DDDD   D++
Sbjct: 160 DDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
           +++ D +DD  DDDD DDDD  D   DD  
Sbjct: 123 LSEIDKDDDVRDDDDFDDDDLGDLASDDRA 152

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 4   VDGEWWMADDDNNDDDDDDDDDDDDDDD------------DDDDDDDDDDDEVIITCKTL 51
            +GEW   + D   +  D +D+++ D+              ++D+++  ++E     K  
Sbjct: 114 DEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173

Query: 52  ISRLTTQRWL 61
            S L T R L
Sbjct: 174 ASELATTRIL 183

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
                D+D+D D +++D+DDD+DDDD ++ 
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
          A  D +++D+DD   DDDDDDDDDDD  D DD+ +
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          ++ DD DDDDDDD  DD D+D DD +D D+
Sbjct: 67 EHTDDLDDDDDDDHVDDRDNDSDDAEDSDD 96

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
          +  +D DDDDDDD  DD D+D DD +D DD
Sbjct: 67 EHTDDLDDDDDDDHVDDRDNDSDDAEDSDD 96

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 14  DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT-QRW 60
            ++DD+ DD+DDDD +D   D D+DD  D   +    L  R+ T +RW
Sbjct: 426 PDDDDEGDDEDDDDWEDLGFDLDEDDVYDLKDVDEWRLERRIATAERW 473

Length = 520

>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3), N-terminal domain

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             DD  D++D  +  DDDDD  D  D D+DDD+
Sbjct: 111 QKDDIADEEDIPEIGDDDDDVVDSSDADEDDDD 143

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme. It catalyzes the conjugation of Atg8 and phosphatidylethanolamine. Length = 146

>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
           DD+  +D+  D+D+++D+DD+  +    +   + I+   L++ L 
Sbjct: 309 DDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISLD-LLTALL 352

This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1). Length = 597

>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD--DEVIITCKTL 51
            + D  DD+  +D+  D+D+++D+DD+  +    E+     +L
Sbjct: 303 KELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISL 345

This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1). Length = 597

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 10 MADDDNNDDDDDD----------DDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
          +    N ++D+++          D DDD+   +D+D+D++DD+E     K  IS+    R
Sbjct: 5  VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64

Length = 1033

>gnl|CDD|225950 COG3416, COG3416, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 14  DNNDDDDDDDDDDDDDDDDDDDDDDDD 40
           D N DD    D D D DD D  D+DD 
Sbjct: 205 DINFDDGSFADIDTDLDDTDSIDNDDF 231

Length = 233

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT 57
             +DD+++DD  D DDDD+++ D + +      EV      ++  L T
Sbjct: 235 ADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKLDAIMDLLFT 282

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            +   + DDDDD++++ + ++D+D DD+ +  
Sbjct: 88  AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 7/40 (17%)

Query: 11  ADDDNN-----DDDDDDDDDDD--DDDDDDDDDDDDDDDE 43
            DDD       ++D+D DD+ +  D + D + +  D +DE
Sbjct: 96  DDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 36.3 bits (85), Expect = 0.004
 Identities = 7/32 (21%), Positives = 21/32 (65%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           + + +      + ++ DDD+D+++++D++DD 
Sbjct: 177 NAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208

Length = 619

>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295)

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            +DDD +  + ++DD D+   +DDDDD D +D  
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSV 316

This family is conserved in fungi but the function is not known. Length = 509

>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295)

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
             DD+ D  + ++DD D+   +DDDDD D +D V
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSV 316

This family is conserved in fungi but the function is not known. Length = 509

>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295)

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D+D  + ++DD D+   +DDDDD D +D  +E
Sbjct: 287 DEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318

This family is conserved in fungi but the function is not known. Length = 509

>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 13/22 (59%), Positives = 20/22 (90%)

Query: 22  DDDDDDDDDDDDDDDDDDDDDE 43
           DDD D+D+D D+D+D+D+D+DE
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910

This family consists of REP proteins from Dictyostelium (Slime molds). REP protein is likely involved in transcription regulation and control of DNA replication, specifically amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity. Length = 910

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             DD   +D D++D DDD  D+++D +   ++ E
Sbjct: 222 TGDDGIEEDADEEDGDDDQPDNNEDSEAGREESE 255

Length = 620

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
                   D  D   DD+ +D  D D DD + 
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEG 257

Length = 672

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
smart00051	63	DSL delta serrate ligand.	99.74
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	99.73
KOG1225|consensus	525		98.8
KOG1219|consensus	4289		98.72
KOG1225|consensus	525		98.66
KOG4289|consensus	2531		98.19
KOG4289|consensus	2531		97.79
KOG1226|consensus	783		97.54
smart00051	63	DSL delta serrate ligand.	97.47
KOG1214|consensus	1289		97.46
KOG1226|consensus	783		97.46
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.3
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.08
KOG4260|consensus	350		96.89
KOG1219|consensus	4289		96.88
KOG1217|consensus	487		96.84
KOG1217|consensus	487		96.45
KOG0994|consensus	1758		95.67
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	95.44
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	95.4
KOG1218|consensus	316		95.32
KOG0943|consensus	3015		95.14
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	95.14
PHA02608	80	67 prohead core protein; Provisional	95.1
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	95.09
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	94.67
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	94.63
KOG1218|consensus	316		94.46
KOG0994|consensus	1758		94.33
KOG1836|consensus	1705		92.81
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	92.71
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	92.26
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	90.27
smart00181	35	EGF Epidermal growth factor-like domain.	89.81
KOG1214|consensus	1289		89.78
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	88.62
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	87.46
PF14812	81	PBP1_TM: Transmembrane domain of transglycosylase	85.49
KOG3130|consensus	514		84.86
KOG3607|consensus	716		84.65
KOG3512|consensus	592		84.58
PF03153	375	TFIIA: Transcription factor IIA, alpha/beta subuni	83.87
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	83.71
cd00053	36	EGF Epidermal growth factor domain, found in epide	83.46
PF12662	24	cEGF: Complement Clr-like EGF-like	83.34
KOG2652|consensus	348		83.21
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	80.2

>smart00051 DSL delta serrate ligand

Probab=99.74  E-value=1.9e-18  Score=116.89  Aligned_cols=63  Identities=54%  Similarity=1.314  Sum_probs=60.8

Q ss_pred             CcccccccceeeeceeEEEecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCCCCCC
Q psy10880         67 WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC  129 (166)
Q Consensus        67 W~~~~~~~~~~~l~~~~r~~C~~gyyG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C  129 (166)
                      |++.++.+..+.|.+++|+.|+++|||..|+++|+|+++.++||+|++.|.|+|+|||+|++|
T Consensus         1 w~~~~~~~~~~~l~~~~rv~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C   63 (63)
T smart00051        1 WSTDLHIGGRTFLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC   63 (63)
T ss_pred             CcccccccccceEEEEEEeeCCCCCcCCccCCEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence            888899999999999999999999999999999999999999999999999999999999987

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=99.73  E-value=1.9e-19  Score=121.80  Aligned_cols=63  Identities=52%  Similarity=1.313  Sum_probs=32.0

Q ss_pred             CcccccccceeeeceeEEEecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCCCCCC
Q psy10880         67 WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC  129 (166)
Q Consensus        67 W~~~~~~~~~~~l~~~~r~~C~~gyyG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C  129 (166)
                      |++.++.+..+.|.+++|++|.++|||+.|+++|.|+.+.++||+|+..|+++|+|||+|++|
T Consensus         1 W~~~~~~~~~~~l~~~~rv~C~~nyyG~~C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen    1 WNTDTHIGNRTSLSYRIRVVCDENYYGPNCSKFCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC   63 (63)
T ss_dssp             ----------------------TTEETTTT-EE---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred             CccccccCceeEEEEEEEEECCCCCCCccccCCcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence            889999999999999999999999999999999999988899999999999999999999998

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>KOG1225|consensus

Probab=98.80  E-value=8.6e-09  Score=94.31  Aligned_cols=75  Identities=23%  Similarity=0.430  Sum_probs=48.3

Q ss_pred             eeEEEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCCCc
Q psy10880         81 YEYRVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQ  159 (166)
Q Consensus        81 ~~~r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~  159 (166)
                      ...+|+|+++|+|..|+. .|...  ..+|+.| .+|+|+|.+||+|..|++.-|...|.  ++|.|+ .++|+|.+||+
T Consensus       263 ~~G~CIC~~Gf~G~dC~e~~Cp~~--cs~~g~~-~~g~CiC~~g~~G~dCs~~~cpadC~--g~G~Ci-~G~C~C~~Gy~  336 (525)
T KOG1225|consen  263 VEGRCICPPGFTGDDCDELVCPVD--CSGGGVC-VDGECICNPGYSGKDCSIRRCPADCS--GHGKCI-DGECLCDEGYT  336 (525)
T ss_pred             eCCeEeCCCCCcCCCCCcccCCcc--cCCCcee-cCCEeecCCCccccccccccCCccCC--CCCccc-CCceEeCCCCc
Confidence            445677777777777777 46432  3345555 45677777777777777665443222  236676 77788888877


Q ss_pred             cC
Q psy10880        160 LY  161 (166)
Q Consensus       160 G~  161 (166)
                      |.
T Consensus       337 G~  338 (525)
T KOG1225|consen  337 GE  338 (525)
T ss_pred             CC
Confidence            76

>KOG1219|consensus

Probab=98.72  E-value=1e-08  Score=104.31  Aligned_cols=97  Identities=21%  Similarity=0.362  Sum_probs=78.2

Q ss_pred             cccccccceeeec-eeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCcc-ccCCCCC
Q psy10880         68 TEDEHKSAHSSML-YEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKA-VQKLSPT  139 (166)
Q Consensus        68 ~~~~~~~~~~~l~-~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~-iC~~~c~  139 (166)
                      ++.+|+|.++... ..|.|+|++-|.|.+|+.   .|.+++. ...++|.+   ...|.|+.||||..|+.. +-.|+..
T Consensus      3870 npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC-~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n 3948 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPC-LTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKN 3948 (4289)
T ss_pred             CcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCC-CCCCEEEecCCCeeEeCCCCccCceeecccccccccc
Confidence            4677888887775 689999999999999997   6887653 34678986   358999999999999987 6556666


Q ss_pred             CCCC-CccCC---CCceeCCCCCccCCCCC
Q psy10880        140 KALP-NRTSR---TLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       140 ~c~n-G~C~~---~~~C~C~~G~~G~~~~~  165 (166)
                      .|.+ |.|.+   .|+|.|.+|+.|.+.|+
T Consensus      3949 ~C~~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3949 VCGTGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred             cccCCceeeccCCceEeccChhHhcccCcc
Confidence            6665 57863   47999999999998775

>KOG1225|consensus

Probab=98.66  E-value=3.1e-08  Score=90.67  Aligned_cols=72  Identities=25%  Similarity=0.490  Sum_probs=60.0

Q ss_pred             EEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCCCccC
Q psy10880         84 RVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus        84 r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      +|+|..+|.|+.|++ .|.++.  .+++.| ..|+|+|.+||+|.+|++..|...   |+++.+...++|+|++||+|+
T Consensus       235 ic~c~~~~~g~~c~~~~C~~~c--~~~g~c-~~G~CIC~~Gf~G~dC~e~~Cp~~---cs~~g~~~~g~CiC~~g~~G~  307 (525)
T KOG1225|consen  235 ICECPEGYFGPLCSTIYCPGGC--TGRGQC-VEGRCICPPGFTGDDCDELVCPVD---CSGGGVCVDGECICNPGYSGK  307 (525)
T ss_pred             eeecCCceeCCccccccCCCCC--cccceE-eCCeEeCCCCCcCCCCCcccCCcc---cCCCceecCCEeecCCCcccc
Confidence            799999999999998 587643  345777 789999999999999999888754   455566667799999999997

>KOG4289|consensus

Probab=98.19  E-value=1.4e-06  Score=86.57  Aligned_cols=79  Identities=20%  Similarity=0.417  Sum_probs=55.7

Q ss_pred             eeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCccccCC--CCCCCCC-CccCC
Q psy10880         78 SMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKAVQKL--SPTKALP-NRTSR  148 (166)
Q Consensus        78 ~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~iC~~--~c~~c~n-G~C~~  148 (166)
                      .-...+||+|++||.|..|++   .|..+. +..|++|-.   .++|.|.|||+|.+|+...=.-  .+--|.| |.|..
T Consensus      1217 ~pvnglrCrCPpGFTgd~CeTeiDlCYs~p-C~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~ 1295 (2531)
T KOG4289|consen 1217 HPVNGLRCRCPPGFTGDYCETEIDLCYSGP-CGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVN 1295 (2531)
T ss_pred             cccCceeEeCCCCCCcccccchhHhhhcCC-CCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEee
Confidence            345678999999999999987   575443 233667753   3578999999999999765222  2223444 56753


Q ss_pred             ----CCceeCCCC
Q psy10880        149 ----TLFCVLEPS  157 (166)
Q Consensus       149 ----~~~C~C~~G  157 (166)
                          -+.|+||.|
T Consensus      1296 ~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1296 LLNGGFCCHCPYG 1308 (2531)
T ss_pred             cCCCceeccCCCc
Confidence                378999988

>KOG4289|consensus

Probab=97.79  E-value=1.1e-05  Score=80.55  Aligned_cols=47  Identities=23%  Similarity=0.536  Sum_probs=38.0

Q ss_pred             CccCCCCCCCCCCCccccCCCCCCCC-CCccC---CCCceeCCCCCccCCCC
Q psy10880        117 DRKCLPGWSGDYCTKAVQKLSPTKAL-PNRTS---RTLFCVLEPSMQLYGNC  164 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC~~~c~~c~-nG~C~---~~~~C~C~~G~~G~~~~  164 (166)
                      +|.|+|||||.+|++.|-.+-..+|. ||+|.   ..|+|+|.+||+|. -|
T Consensus      1223 rCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe-hC 1273 (2531)
T KOG4289|consen 1223 RCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE-HC 1273 (2531)
T ss_pred             eEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCcccc-ce
Confidence            66999999999999998555555555 47886   46999999999997 44

>KOG1226|consensus

Probab=97.54  E-value=0.00013  Score=69.13  Aligned_cols=16  Identities=25%  Similarity=0.636  Sum_probs=13.5

Q ss_pred             eEEEecCCCCCCCCCC
Q psy10880         82 EYRVTCDPHYYGNGCA   97 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~   97 (166)
                      -.+|.|.++|+|..|+
T Consensus       477 CG~C~C~~G~~G~~CE  492 (783)
T KOG1226|consen  477 CGQCRCDEGWLGKKCE  492 (783)
T ss_pred             ecceecCCCCCCCccc
Confidence            3468999999999995

>smart00051 DSL delta serrate ligand

Probab=97.47  E-value=0.00017  Score=48.61  Aligned_cols=44  Identities=9%  Similarity=-0.105  Sum_probs=33.9

Q ss_pred             CccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCCCccC
Q psy10880        117 DRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      +-+|.++|.|..|.+ .|.+......+..|...+.|.|++||+|.
T Consensus        18 rv~C~~~~yG~~C~~-~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~   61 (63)
T smart00051       18 RVTCDENYYGEGCNK-FCRPRDDFFGHYTCDENGNKGCLEGWMGP   61 (63)
T ss_pred             EeeCCCCCcCCccCC-EeCcCccccCCccCCcCCCEecCCCCcCC
Confidence            448899999999964 55654333344578888999999999996

>KOG1214|consensus

Probab=97.46  E-value=0.00011  Score=70.53  Aligned_cols=88  Identities=24%  Similarity=0.362  Sum_probs=55.3

Q ss_pred             ceeeeceeEEEecCCCCC----CCCCCCCCCCC-----------CCCCCcccCCC----CCCccCCCCCCCC--C-CCcc
Q psy10880         75 AHSSMLYEYRVTCDPHYY----GNGCATLCRPR-----------DDSFGHYTCSH----TGDRKCLPGWSGD--Y-CTKA  132 (166)
Q Consensus        75 ~~~~l~~~~r~~C~~gyy----G~~C~~~C~p~-----------~~~~ghy~C~~----~G~c~C~~GwtG~--~-C~~~  132 (166)
                      .++.+..+|||.|..+|-    |..|..+-.|+           ....||.+|..    ...|.|+|||.|.  . |...
T Consensus       749 ~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvD  828 (1289)
T KOG1214|consen  749 VCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVD  828 (1289)
T ss_pred             eeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCcccccccc
Confidence            456777788888888763    34664322211           12345666653    3588999999985  3 4444


Q ss_pred             ccCCCCCCCCCCccC---CCCceeCCCCCccCCC
Q psy10880        133 VQKLSPTKALPNRTS---RTLFCVLEPSMQLYGN  163 (166)
Q Consensus       133 iC~~~c~~c~nG~C~---~~~~C~C~~G~~G~~~  163 (166)
                      -|.++.+. ++..|.   ..+.|+|.+||+|.|-
T Consensus       829 eC~psrCh-p~A~CyntpgsfsC~C~pGy~GDGf  861 (1289)
T KOG1214|consen  829 ECSPSRCH-PAATCYNTPGSFSCRCQPGYYGDGF  861 (1289)
T ss_pred             ccCccccC-CCceEecCCCcceeecccCccCCCc
Confidence            44433222 245675   3589999999999983

>KOG1226|consensus

Probab=97.46  E-value=0.0002  Score=67.99  Aligned_cols=77  Identities=22%  Similarity=0.377  Sum_probs=47.5

Q ss_pred             EEecCCC----CCCCCCCC---CCCC--CCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCccCCC-----
Q psy10880         84 RVTCDPH----YYGNGCAT---LCRP--RDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRT-----  149 (166)
Q Consensus        84 r~~C~~g----yyG~~C~~---~C~p--~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~-----  149 (166)
                      +|+|-+.    +||+.|+-   .|.-  ..-+.||++| .=|+|+|.+||+|.+|.-+.-...|..-+++.|...     
T Consensus       526 qC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C-~CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~C  604 (783)
T KOG1226|consen  526 QCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRC-ECGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCEC  604 (783)
T ss_pred             ceEecCCCCCceeeeeeeccCcccccccCcccCCCCeE-eCCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeC
Confidence            4555444    45888764   2321  1124578887 679999999999999986643333333333355532     


Q ss_pred             CceeCCCC-CccC
Q psy10880        150 LFCVLEPS-MQLY  161 (166)
Q Consensus       150 ~~C~C~~G-~~G~  161 (166)
                      ++|+|... |+|.
T Consensus       605 g~C~C~~~~~sG~  617 (783)
T KOG1226|consen  605 GRCKCTDPPYSGE  617 (783)
T ss_pred             CceEcCCCCcCcc
Confidence            67777766 7775

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.30  E-value=0.00019  Score=42.26  Aligned_cols=24  Identities=38%  Similarity=0.776  Sum_probs=19.0

Q ss_pred             CCCcccCCCC-CCccCCCCCCCCCC
Q psy10880        106 SFGHYTCSHT-GDRKCLPGWSGDYC  129 (166)
Q Consensus       106 ~~ghy~C~~~-G~c~C~~GwtG~~C  129 (166)
                      ..+|++|... ++|+|.+||+|++|
T Consensus         8 C~~~G~C~~~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    8 CSGHGTCVSPCGRCVCDSGYTGPDC   32 (32)
T ss_pred             cCCCCEEeCCCCEEECCCCCcCCCC
Confidence            3468888765 88889999988876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.08  E-value=0.00013  Score=34.86  Aligned_cols=12  Identities=50%  Similarity=1.508  Sum_probs=7.9

Q ss_pred             ccCCCCCCCCCC
Q psy10880        118 RKCLPGWSGDYC  129 (166)
Q Consensus       118 c~C~~GwtG~~C  129 (166)
                      |+|++||+|.+|
T Consensus         2 C~C~~G~~G~~C   13 (13)
T PF12661_consen    2 CQCPPGWTGPNC   13 (13)
T ss_dssp             EEE-TTEETTTT
T ss_pred             ccCcCCCcCCCC
Confidence            577777777766

>KOG4260|consensus

Probab=96.89  E-value=0.0017  Score=55.79  Aligned_cols=51  Identities=29%  Similarity=0.741  Sum_probs=39.7

Q ss_pred             ceeEEEecCCCCCCCCCCCCCCC--CCCCCCcccCCC------CCCccCCCCCCCCCCCc
Q psy10880         80 LYEYRVTCDPHYYGNGCATLCRP--RDDSFGHYTCSH------TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus        80 ~~~~r~~C~~gyyG~~C~~~C~p--~~~~~ghy~C~~------~G~c~C~~GwtG~~C~~  131 (166)
                      ..+.++-|+.|.||+.|.. |.-  ...++|++.|.-      +|.|.|.+||+|+.|..
T Consensus       125 vdqLkvCCp~gtyGpdCl~-Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~  183 (350)
T KOG4260|consen  125 VDQLKVCCPDGTYGPDCLQ-CPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY  183 (350)
T ss_pred             hhhheeccCCCCcCCcccc-CCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence            4678899999999999964 521  113678888872      58999999999998873

>KOG1219|consensus

Probab=96.88  E-value=0.00087  Score=70.03  Aligned_cols=48  Identities=17%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             CCccCCCCCCCCCCCccccCCCCCCCCC-CccC---CCCceeCCCCCccCCCC
Q psy10880        116 GDRKCLPGWSGDYCTKAVQKLSPTKALP-NRTS---RTLFCVLEPSMQLYGNC  164 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~iC~~~c~~c~n-G~C~---~~~~C~C~~G~~G~~~~  164 (166)
                      +.|.|++-|+|.+|++.+=.|.+.||.. |.|.   +.+.|.|+.||+|. -|
T Consensus      3886 y~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~-~C 3937 (4289)
T KOG1219|consen 3886 YKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGK-RC 3937 (4289)
T ss_pred             eEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCc-ee
Confidence            3569999999999999885566667765 5776   45899999999997 44

>KOG1217|consensus

Probab=96.84  E-value=0.003  Score=54.43  Aligned_cols=87  Identities=18%  Similarity=0.343  Sum_probs=63.8

Q ss_pred             eeeeceeEEEecCCCCCCCCCCC--CCCCCCC-CCCcccCCC------CCCccCCCCCCCCCCCcc--ccCCCCCCCCC-
Q psy10880         76 HSSMLYEYRVTCDPHYYGNGCAT--LCRPRDD-SFGHYTCSH------TGDRKCLPGWSGDYCTKA--VQKLSPTKALP-  143 (166)
Q Consensus        76 ~~~l~~~~r~~C~~gyyG~~C~~--~C~p~~~-~~ghy~C~~------~G~c~C~~GwtG~~C~~~--iC~~~c~~c~n-  143 (166)
                      .......++|.|.++|.|..|..  .|..... ...+..|..      ...|.|..||.|..|...  .|......|.+ 
T Consensus       103 ~~~~~~~~~c~c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~  182 (487)
T KOG1217|consen  103 CVDCVGSYECTCPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNG  182 (487)
T ss_pred             ccCCCCCceeeCCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCC
Confidence            34466788999999999999998  5766542 223455553      467899999999999875  46644545665 


Q ss_pred             CccCC---CCceeCCCCCccCC
Q psy10880        144 NRTSR---TLFCVLEPSMQLYG  162 (166)
Q Consensus       144 G~C~~---~~~C~C~~G~~G~~  162 (166)
                      +.|..   .|.|.|++||+|..
T Consensus       183 ~~C~~~~~~~~C~c~~~~~~~~  204 (487)
T KOG1217|consen  183 GTCVNTGGSYLCSCPPGYTGST  204 (487)
T ss_pred             cccccCCCCeeEeCCCCccCCc
Confidence            46753   37899999999984

>KOG1217|consensus

Probab=96.45  E-value=0.0097  Score=51.30  Aligned_cols=87  Identities=24%  Similarity=0.421  Sum_probs=58.8

Q ss_pred             ccceeeeceeEEEecCCCCCCCCCCC------CCCCC---CCCCCcccCCC-----CCCccCCCCCCCCCCCcc--ccCC
Q psy10880         73 KSAHSSMLYEYRVTCDPHYYGNGCAT------LCRPR---DDSFGHYTCSH-----TGDRKCLPGWSGDYCTKA--VQKL  136 (166)
Q Consensus        73 ~~~~~~l~~~~r~~C~~gyyG~~C~~------~C~p~---~~~~ghy~C~~-----~G~c~C~~GwtG~~C~~~--iC~~  136 (166)
                      .+..+.+...|+|.|.++|.|..| .      .|.++   ......+.|..     ...|.|.+||+|..|+..  .|..
T Consensus       283 ~~~C~~~~~~~~C~C~~g~~g~~~-~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~  361 (487)
T KOG1217|consen  283 GGTCVNVPGSYRCTCPPGFTGRLC-TECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECAS  361 (487)
T ss_pred             CCeeecCCCcceeeCCCCCCCCCC-ccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccC
Confidence            455666666699999999999998 2      34321   11222345632     235899999999999877  4665


Q ss_pred             CCCCCCCCccCC----CCceeCCCCCccC
Q psy10880        137 SPTKALPNRTSR----TLFCVLEPSMQLY  161 (166)
Q Consensus       137 ~c~~c~nG~C~~----~~~C~C~~G~~G~  161 (166)
                      ..+ ..++.|..    .+.|.|+.+|.+.
T Consensus       362 ~~~-~~~~~c~~~~~~~~~c~~~~~~~~~  389 (487)
T KOG1217|consen  362 SPC-CPGGTCVNETPGSYRCACPAGFAGK  389 (487)
T ss_pred             Ccc-ccCCEeccCCCCCeEecCCCccccC
Confidence            442 23455653    4899999999874

>KOG0994|consensus

Probab=95.67  E-value=0.015  Score=57.94  Aligned_cols=82  Identities=28%  Similarity=0.562  Sum_probs=48.7

Q ss_pred             ceeEEEecCCCCCCCCCCC------------CCCCC-CCCCCcccCCC-CCCccCCCCCCCCCCCccc--------cCCC
Q psy10880         80 LYEYRVTCDPHYYGNGCAT------------LCRPR-DDSFGHYTCSH-TGDRKCLPGWSGDYCTKAV--------QKLS  137 (166)
Q Consensus        80 ~~~~r~~C~~gyyG~~C~~------------~C~p~-~~~~ghy~C~~-~G~c~C~~GwtG~~C~~~i--------C~~~  137 (166)
                      +.+..|.|.++-.|..|..            -|.|- .+..+.-+|+. +|.|+|.|||-|-.|++-.        =.++
T Consensus      1034 r~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~ 1113 (1758)
T KOG0994|consen 1034 RFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQCQELYWGDPNEKCR 1113 (1758)
T ss_pred             cccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCccccccccceeccCCCCCcchhHHHHhhcCCCCCCce
Confidence            3445566666666666642            02211 12234458887 7999999999999987532        1122


Q ss_pred             CCCCCC-C----ccCC-CCceeCCCCCccC
Q psy10880        138 PTKALP-N----RTSR-TLFCVLEPSMQLY  161 (166)
Q Consensus       138 c~~c~n-G----~C~~-~~~C~C~~G~~G~  161 (166)
                      .+.|.. |    .|.. .++|.|++|-.|.
T Consensus      1114 aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~ 1143 (1758)
T KOG0994|consen 1114 ACDCDPRGIETPQCDRATGRCVCRPGVGGP 1143 (1758)
T ss_pred             ecCCCCCCCCCCCccccCCceeecCCCCCc
Confidence            233322 2    3543 5899999987775

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=95.44  E-value=0.0043  Score=45.35  Aligned_cols=13  Identities=62%  Similarity=1.122  Sum_probs=0.0

Q ss_pred             CCCCCCCCccccc
Q psy10880         34 DDDDDDDDDEVII   46 (166)
Q Consensus        34 ~~~~~~~~~~~~~   46 (166)
                      ++|||+|++++++
T Consensus        31 Dddddee~de~p~   43 (101)
T PF09026_consen   31 DDDDDEEEDEVPV   43 (101)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            3344444446654

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=95.40  E-value=0.0029  Score=42.64  Aligned_cols=45  Identities=16%  Similarity=-0.006  Sum_probs=23.0

Q ss_pred             CCccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCCCccC
Q psy10880        116 GDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      .+.+|.+.|.|+.|.+ .|.+.-....+-.|...++=.|.+||+|.
T Consensus        17 ~rv~C~~nyyG~~C~~-~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~   61 (63)
T PF01414_consen   17 IRVVCDENYYGPNCSK-FCKPRDDSFGHYTCDSNGNKVCLPGWTGP   61 (63)
T ss_dssp             ------TTEETTTT-E-E---EEETTEEEEE-SS--EEE-TTEEST
T ss_pred             EEEECCCCCCCccccC-CcCCCcCCcCCcccCCCCCCCCCCCCcCC
Confidence            4558999999999976 44543222222368888999999999997

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>KOG1218|consensus

Probab=95.32  E-value=0.038  Score=46.17  Aligned_cols=70  Identities=21%  Similarity=0.395  Sum_probs=43.2

Q ss_pred             EEecCC-CCCCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCCCCCCCcccc--CCCCCCCCCC-ccCC-CCceeCCCCC
Q psy10880         84 RVTCDP-HYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQ--KLSPTKALPN-RTSR-TLFCVLEPSM  158 (166)
Q Consensus        84 r~~C~~-gyyG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC--~~~c~~c~nG-~C~~-~~~C~C~~G~  158 (166)
                      ...|.. +|+|..|...|.+.     +......+.|.|++||+|.+|.....  .. ...+.++ .|.. ...+.+.++|
T Consensus       134 ~~~C~~~~~~g~~C~~~c~~~-----~~~~~~~~~c~c~~g~~g~~~~~~~~~c~~-~~~~~~g~~C~~~~~~~~~~~~~  207 (316)
T KOG1218|consen  134 GEQCGEENLVGLKCQRDCQCT-----GGCDCKNGICTCQPGFVGVFCVESCSGCSP-LTACENGAKCNRSTGSCLCYPGP  207 (316)
T ss_pred             cccccccCCCCCCccCCCCCc-----cccCCCCCceeccCCcccccccccCCCcCC-CcccCCCCeeeccccccccCCCC
Confidence            344554 77788887777321     23333678999999999999987653  32 2333443 6653 3555555555


Q ss_pred             c
Q psy10880        159 Q  159 (166)
Q Consensus       159 ~  159 (166)
                      .
T Consensus       208 ~  208 (316)
T KOG1218|consen  208 S  208 (316)
T ss_pred             c
Confidence            4

>KOG0943|consensus

Probab=95.14  E-value=0.013  Score=59.06  Aligned_cols=25  Identities=56%  Similarity=0.812  Sum_probs=15.8

Q ss_pred             ecCcccccCCCCCCCCCCCCCCCCC
Q psy10880          4 VDGEWWMADDDNNDDDDDDDDDDDD   28 (166)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~   28 (166)
                      ++|+.+..|++|++++|+++..+++
T Consensus      1730 f~GEed~~Dddnddddddd~EaEdd 1754 (3015)
T KOG0943|consen 1730 FAGEEDHHDDDNDDDDDDDAEAEDD 1754 (3015)
T ss_pred             ccCcccccccccccccccchhhccc
Confidence            5788887777766666555443333

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.14  E-value=0.0055  Score=35.65  Aligned_cols=22  Identities=9%  Similarity=0.001  Sum_probs=16.6

Q ss_pred             CCCC-CccC----CCCceeCCCCCccC
Q psy10880        140 KALP-NRTS----RTLFCVLEPSMQLY  161 (166)
Q Consensus       140 ~c~n-G~C~----~~~~C~C~~G~~G~  161 (166)
                      +|+| |.|.    ..|+|+|++||+|.
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            5555 5675    34899999999986

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PHA02608 67 prohead core protein; Provisional

Probab=95.10  E-value=0.011  Score=41.49  Aligned_cols=7  Identities=43%  Similarity=0.838  Sum_probs=4.8

Q ss_pred             ceecCcc
Q psy10880          2 MMVDGEW    8 (166)
Q Consensus         2 ~~~~~~~    8 (166)
                      +||.|+-
T Consensus        43 v~iEGEe   49 (80)
T PHA02608         43 VMIEGEE   49 (80)
T ss_pred             HhhcCCC
Confidence            4788873

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=95.09  E-value=0.035  Score=35.21  Aligned_cols=22  Identities=32%  Similarity=0.758  Sum_probs=18.6

Q ss_pred             ccCCC-CCCccCCCCCCCCCCCc
Q psy10880        110 YTCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus       110 y~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      ..|++ +|+|.|.+||+|..|++
T Consensus        12 ~~C~~~~G~C~C~~~~~G~~C~~   34 (50)
T cd00055          12 GQCDPGTGQCECKPNTTGRRCDR   34 (50)
T ss_pred             ccccCCCCEEeCCCcCCCCCCCC
Confidence            45876 78999999999999973

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=94.67  E-value=0.049  Score=34.08  Aligned_cols=22  Identities=36%  Similarity=0.809  Sum_probs=18.4

Q ss_pred             ccCCC-CCCccCCCCCCCCCCCc
Q psy10880        110 YTCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus       110 y~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      ..|++ .|+|.|.+||+|..|++
T Consensus        11 ~~C~~~~G~C~C~~~~~G~~C~~   33 (46)
T smart00180       11 GTCDPDTGQCECKPNVTGRRCDR   33 (46)
T ss_pred             CcccCCCCEEECCCCCCCCCCCc
Confidence            46876 68999999999999963

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.63  E-value=0.038  Score=32.36  Aligned_cols=20  Identities=10%  Similarity=-0.086  Sum_probs=17.2

Q ss_pred             CCCccCCC-CceeCCCCCccC
Q psy10880        142 LPNRTSRT-LFCVLEPSMQLY  161 (166)
Q Consensus       142 ~nG~C~~~-~~C~C~~G~~G~  161 (166)
                      ++|.|+.+ ++|+|.+||+|.
T Consensus        10 ~~G~C~~~~g~C~C~~g~~G~   30 (32)
T PF07974_consen   10 GHGTCVSPCGRCVCDSGYTGP   30 (32)
T ss_pred             CCCEEeCCCCEEECCCCCcCC
Confidence            35889876 999999999996

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1218|consensus

Probab=94.46  E-value=0.1  Score=43.49  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCC-CccCCCCCCCCCCCcc-----ccCCCCCCCCCCccCCCCceeCCCCCccC
Q psy10880         88 DPHYYGNGCATLCRPRDDSFGHYTCSHTG-DRKCLPGWSGDYCTKA-----VQKLSPTKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus        88 ~~gyyG~~C~~~C~p~~~~~ghy~C~~~G-~c~C~~GwtG~~C~~~-----iC~~~c~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      ..+|.|..|...|......+. .+|.... .|.|..+|.+..|...     .|...+ .+..+.......|.|++||.|.
T Consensus        96 ~~~~~g~~C~~~~~~~~~c~~-~~C~~~~~~c~~~~~~~~~~C~~~~~~g~~C~~~c-~~~~~~~~~~~~c~c~~g~~g~  173 (316)
T KOG1218|consen   96 LNGYEGPQCESPCPCGDGCAE-KTCANPRRECRCGGGYIGEQCGEENLVGLKCQRDC-QCTGGCDCKNGICTCQPGFVGV  173 (316)
T ss_pred             CCCCCcccccCCCCcCCcccc-cccCCCccceecCCcCccccccccCCCCCCccCCC-CCccccCCCCCceeccCCcccc
Confidence            688889999887765331111 5776665 5899999999988771     144333 2223344467999999999987

>KOG0994|consensus

Probab=94.33  E-value=0.056  Score=54.15  Aligned_cols=51  Identities=22%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             ccCCC-CCCccCCCCCCCCCCCccc-----------cCC-CCCCCCCC-ccCC-CCceeCCCCCccC
Q psy10880        110 YTCSH-TGDRKCLPGWSGDYCTKAV-----------QKL-SPTKALPN-RTSR-TLFCVLEPSMQLY  161 (166)
Q Consensus       110 y~C~~-~G~c~C~~GwtG~~C~~~i-----------C~~-~c~~c~nG-~C~~-~~~C~C~~G~~G~  161 (166)
                      ..|+. +|.|.|+|.-.|..|+.-.           |.+ .|.+ .++ .|+. .++|+|.|||-|.
T Consensus      1030 ~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~-~~~pqCN~ftGQCqCkpGfGGR 1095 (1758)
T KOG0994|consen 1030 CHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDP-IGGPQCNEFTGQCQCKPGFGGR 1095 (1758)
T ss_pred             cccccccCcCCCCcccccccccccccchhccccCCCCCccCCCc-cCCccccccccceeccCCCCCc
Confidence            34665 7999999999999998632           221 1111 123 3543 4899999999887

>KOG1836|consensus

Probab=92.81  E-value=0.13  Score=53.48  Aligned_cols=76  Identities=28%  Similarity=0.514  Sum_probs=51.6

Q ss_pred             EecCCCCCCCCCCCCCCCC----------------CCCCCc-ccCCC-CCCccCCCCCCCCCCCccc------------c
Q psy10880         85 VTCDPHYYGNGCATLCRPR----------------DDSFGH-YTCSH-TGDRKCLPGWSGDYCTKAV------------Q  134 (166)
Q Consensus        85 ~~C~~gyyG~~C~~~C~p~----------------~~~~gh-y~C~~-~G~c~C~~GwtG~~C~~~i------------C  134 (166)
                      |.|+.||.|..|.. |.|.                .+..|| -+|++ +|.|.|.+-=.|..|.+-.            =
T Consensus       697 c~C~~g~tG~~Ce~-C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~  775 (1705)
T KOG1836|consen  697 CTCPVGYTGQFCES-CAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSG  775 (1705)
T ss_pred             ccCCCCcccchhhh-cchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCCCccccCCCC
Confidence            99999999999974 2211                234566 57876 7899888877787776532            1


Q ss_pred             CCCCCCCCC-CccC-----CCCcee-CCCCCccC
Q psy10880        135 KLSPTKALP-NRTS-----RTLFCV-LEPSMQLY  161 (166)
Q Consensus       135 ~~~c~~c~n-G~C~-----~~~~C~-C~~G~~G~  161 (166)
                      .+.+++|.+ +.|.     ..+.|. |++||+|.
T Consensus       776 dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~  809 (1705)
T KOG1836|consen  776 DCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGL  809 (1705)
T ss_pred             CCccCCCCCChhhcCcCcccceecCCCCCCCccc
Confidence            133444444 3443     348998 99999997

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=92.71  E-value=0.032  Score=40.80  Aligned_cols=16  Identities=38%  Similarity=0.626  Sum_probs=0.5

Q ss_pred             CCCCCCCCCCCccccc
Q psy10880         31 DDDDDDDDDDDDEVII   46 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~   46 (166)
                      +|++++++++---..|
T Consensus        31 Dddddee~de~p~p~f   46 (101)
T PF09026_consen   31 DDDDDEEEDEVPVPEF   46 (101)
T ss_dssp             ---------------H
T ss_pred             ccccccccccccchhH
Confidence            3333334445555544

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=92.26  E-value=0.099  Score=30.25  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=13.4

Q ss_pred             ccccceeeec-eeEEEecCCCCCCC
Q psy10880         71 EHKSAHSSML-YEYRVTCDPHYYGN   94 (166)
Q Consensus        71 ~~~~~~~~l~-~~~r~~C~~gyyG~   94 (166)
                      .+.|..+.+. ..|+|.|+++|.|.
T Consensus         7 ~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    7 QNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCeEEEeCCCCCEEeECCCCCccC
Confidence            3445555555 56666666666554

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=90.27  E-value=0.065  Score=32.14  Aligned_cols=15  Identities=20%  Similarity=0.363  Sum_probs=12.4

Q ss_pred             CCceeCCCCCccCCC
Q psy10880        149 TLFCVLEPSMQLYGN  163 (166)
Q Consensus       149 ~~~C~C~~G~~G~~~  163 (166)
                      .+.|+|++||.|.|-
T Consensus        20 ~~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen   20 SYTCTCKPGYEGDGF   34 (36)
T ss_dssp             SEEEEE-CEEECCST
T ss_pred             CEEeECCCCCccCCc
Confidence            589999999999973

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=89.81  E-value=0.29  Score=27.80  Aligned_cols=11  Identities=45%  Similarity=1.389  Sum_probs=7.9

Q ss_pred             cCCCCCCC-CCC
Q psy10880        119 KCLPGWSG-DYC  129 (166)
Q Consensus       119 ~C~~GwtG-~~C  129 (166)
                      .|.+||+| ..|
T Consensus        23 ~C~~g~~g~~~C   34 (35)
T smart00181       23 SCPPGYTGDKRC   34 (35)
T ss_pred             ECCCCCccCCcc
Confidence            77788877 555

>KOG1214|consensus

Probab=89.78  E-value=0.58  Score=45.95  Aligned_cols=83  Identities=19%  Similarity=0.315  Sum_probs=48.1

Q ss_pred             eeEEEecCCCCCCC--CCCC--CCCCCCCCCCcccCCC---CCCccCCCCCCCC--CCCc-----cccCC---CCCCCCC
Q psy10880         81 YEYRVTCDPHYYGN--GCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWSGD--YCTK-----AVQKL---SPTKALP  143 (166)
Q Consensus        81 ~~~r~~C~~gyyG~--~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~--~C~~-----~iC~~---~c~~c~n  143 (166)
                      ..|.|.|.+||.|.  .|..  .|.|.-.. -..+|-.   ...|+|.|||+|.  .|-.     ..|..   .+..|.+
T Consensus       807 s~y~C~CLPGfsGDG~~c~dvDeC~psrCh-p~A~CyntpgsfsC~C~pGy~GDGf~CVP~~~~~T~C~~er~hpl~chg  885 (1289)
T KOG1214|consen  807 STYSCACLPGFSGDGHQCTDVDECSPSRCH-PAATCYNTPGSFSCRCQPGYYGDGFQCVPDTSSLTPCEQERFHPLQCHG  885 (1289)
T ss_pred             ceEEEeecCCccCCccccccccccCccccC-CCceEecCCCcceeecccCccCCCceecCCCccCCccccccccceeecc
Confidence            57899999999865  4544  46654211 1223321   2467999999984  2321     11332   1333332


Q ss_pred             --Ccc--C--CCCceeCCCCCccCCCC
Q psy10880        144 --NRT--S--RTLFCVLEPSMQLYGNC  164 (166)
Q Consensus       144 --G~C--~--~~~~C~C~~G~~G~~~~  164 (166)
                        +.|  +  ..++|.|.++-.|+|+.
T Consensus       886 ~t~~~~~~Dp~~~e~p~~~~ppG~~~~  912 (1289)
T KOG1214|consen  886 STGFCWCVDPDGHEVPGTQTPPGSTPP  912 (1289)
T ss_pred             ccceeEeeCCCcccCCCCCCCCCCCCC
Confidence              222  2  23899999998888764

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=88.62  E-value=0.12  Score=32.30  Aligned_cols=22  Identities=41%  Similarity=0.856  Sum_probs=17.1

Q ss_pred             ccCCC-CCCccCCCCCCCCCCCc
Q psy10880        110 YTCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus       110 y~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      .+|++ +|+|+|.++|+|..|++
T Consensus        11 ~~C~~~~G~C~C~~~~~G~~C~~   33 (49)
T PF00053_consen   11 QTCDPSTGQCVCKPGTTGPRCDQ   33 (49)
T ss_dssp             SSEEETCEEESBSTTEESTTS-E
T ss_pred             CcccCCCCEEeccccccCCcCcC
Confidence            46765 68889999999999985

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=87.46  E-value=0.58  Score=26.79  Aligned_cols=12  Identities=42%  Similarity=1.290  Sum_probs=8.9

Q ss_pred             cCCCCCC-CCCCC
Q psy10880        119 KCLPGWS-GDYCT  130 (166)
Q Consensus       119 ~C~~Gwt-G~~C~  130 (166)
                      .|.+||+ |..|+
T Consensus        27 ~C~~g~~~g~~C~   39 (39)
T smart00179       27 ECPPGYTDGRNCE   39 (39)
T ss_pred             ECCCCCccCCcCC
Confidence            7888887 77763

>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A

Probab=85.49  E-value=0.25  Score=35.03  Aligned_cols=7  Identities=14%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             chhhhhh
Q psy10880         48 CKTLISR   54 (166)
Q Consensus        48 ~~~LIsR   54 (166)
                      ++..|.|
T Consensus        49 eee~m~r   55 (81)
T PF14812_consen   49 EEEPMPR   55 (81)
T ss_dssp             -------
T ss_pred             hcccccc
Confidence            3444443

>KOG3130|consensus

Probab=84.86  E-value=0.54  Score=42.57  Aligned_cols=6  Identities=33%  Similarity=0.323  Sum_probs=2.7

Q ss_pred             ecCccc
Q psy10880          4 VDGEWW    9 (166)
Q Consensus         4 ~~~~~~    9 (166)
                      |+|.++
T Consensus       265 v~~~ss  270 (514)
T KOG3130|consen  265 VNGSSS  270 (514)
T ss_pred             ccCCCC
Confidence            444444

>KOG3607|consensus

Probab=84.65  E-value=0.6  Score=44.97  Aligned_cols=27  Identities=30%  Similarity=0.755  Sum_probs=24.8

Q ss_pred             CCCcccCCCCCCccCCCCCCCCCCCcc
Q psy10880        106 SFGHYTCSHTGDRKCLPGWSGDYCTKA  132 (166)
Q Consensus       106 ~~ghy~C~~~G~c~C~~GwtG~~C~~~  132 (166)
                      +.+|++|+...+|+|.+||.+++|+..
T Consensus       632 C~g~GVCnn~~~ChC~~gwapp~C~~~  658 (716)
T KOG3607|consen  632 CNGHGVCNNELNCHCEPGWAPPFCFIF  658 (716)
T ss_pred             cCCCcccCCCcceeeCCCCCCCccccc
Confidence            568999999999999999999999874

>KOG3512|consensus

Probab=84.58  E-value=2.1  Score=39.62  Aligned_cols=54  Identities=20%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             CcccCCC-CCCccCCCCCCCCCCCcc----------ccCCCC------CCCCCCccCCCCceeCCCCCccC
Q psy10880        108 GHYTCSH-TGDRKCLPGWSGDYCTKA----------VQKLSP------TKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus       108 ghy~C~~-~G~c~C~~GwtG~~C~~~----------iC~~~c------~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      .|.+|+. +|.|.|.+|=+|..|+.-          ++.+..      ..++++.--+..-+.|+++..|+
T Consensus       405 ~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve~qd~~s~Ck~~~~~~  475 (592)
T KOG3512|consen  405 AGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVEPQDQCSKCKASPGGK  475 (592)
T ss_pred             ccccccccCCcccCCCCCcccccccccchhhcccCCCcCceecCCCCccccCCCCcchhccccCCCCCcce
Confidence            3678994 899999999999999741          222211      11111111234677999888765

>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site

Probab=83.87  E-value=0.32  Score=42.63  Aligned_cols=10  Identities=40%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             ecCcccccCC
Q psy10880          4 VDGEWWMADD   13 (166)
Q Consensus         4 ~~~~~~~~~~   13 (166)
                      +||...++++
T Consensus       273 ~DG~~d~~~~  282 (375)
T PF03153_consen  273 LDGAGDDSDD  282 (375)
T ss_dssp             ----------
T ss_pred             ccCCCCCccc
Confidence            5666544443

After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=83.71  E-value=1  Score=25.22  Aligned_cols=11  Identities=45%  Similarity=1.377  Sum_probs=8.0

Q ss_pred             cCCCCCCCCCC
Q psy10880        119 KCLPGWSGDYC  129 (166)
Q Consensus       119 ~C~~GwtG~~C  129 (166)
                      .|.+||.|..|
T Consensus        27 ~C~~g~~g~~C   37 (38)
T cd00054          27 SCPPGYTGRNC   37 (38)
T ss_pred             ECCCCCcCCcC
Confidence            67777777666

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=83.46  E-value=1.3  Score=24.32  Aligned_cols=11  Identities=55%  Similarity=1.458  Sum_probs=7.6

Q ss_pred             cCCCCCCCC-CC
Q psy10880        119 KCLPGWSGD-YC  129 (166)
Q Consensus       119 ~C~~GwtG~-~C  129 (166)
                      .|++||.|. .|
T Consensus        24 ~C~~g~~g~~~C   35 (36)
T cd00053          24 VCPPGYTGDRSC   35 (36)
T ss_pred             ECCCCCcccCCc
Confidence            777777776 44

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=83.34  E-value=0.61  Score=25.65  Aligned_cols=13  Identities=31%  Similarity=0.524  Sum_probs=10.4

Q ss_pred             CCceeCCCCCccC
Q psy10880        149 TLFCVLEPSMQLY  161 (166)
Q Consensus       149 ~~~C~C~~G~~G~  161 (166)
                      .|+|.|++||+-.
T Consensus         1 sy~C~C~~Gy~l~   13 (24)
T PF12662_consen    1 SYTCSCPPGYQLS   13 (24)
T ss_pred             CEEeeCCCCCcCC
Confidence            3789999999843

>KOG2652|consensus

Probab=83.21  E-value=0.93  Score=40.00  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=9.0

Q ss_pred             eecCcccccCCCCCC
Q psy10880          3 MVDGEWWMADDDNND   17 (166)
Q Consensus         3 ~~~~~~~~~~~~~~~   17 (166)
                      -|||...++++++++
T Consensus       252 Q~Dg~~~~~eE~e~E  266 (348)
T KOG2652|consen  252 QVDGTGDTSEEDENE  266 (348)
T ss_pred             ecccccccccccccc
Confidence            467877766444444

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=80.20  E-value=0.7  Score=28.05  Aligned_cols=17  Identities=12%  Similarity=0.266  Sum_probs=13.6

Q ss_pred             CCccC---CCCceeCCCCCc
Q psy10880        143 PNRTS---RTLFCVLEPSMQ  159 (166)
Q Consensus       143 nG~C~---~~~~C~C~~G~~  159 (166)
                      ++.|.   ..|+|.|++||+
T Consensus        15 ~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   15 NGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             TSEEEEETTEEEEEESTTEE
T ss_pred             CCEEEcCCCCEEeeCCCCcE
Confidence            45676   359999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
2vj2_A	169	Human Jagged-1, Domains Dsl And Egfs1-3 Length = 16		9e-12

>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3 Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 85  VTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV--QKLSPTKA 141
           VTCD +YYG GC   CRPRDD FGHY C   G++ C+ GW G  C +A+  Q  SP   
Sbjct: 19  VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHG 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	3e-15
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-07
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-07
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-07
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-07
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	2e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	6e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	9e-06
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	4e-05
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	8e-05
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	2e-05
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	6e-05
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	6e-05
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	8e-05
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	1e-04
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	2e-04
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	6e-04
3h0g_F	142	DNA-directed RNA polymerases I, II, and III subuni	1e-04
3ay5_A	360	Cyclin-D1-binding protein 1; dominant-negative hel	2e-04
1rm1_C	286	Transcription initiation factor IIA large chain; y	2e-04
3k8p_C	357	DSL1, KLLA0C02695P; intracellular trafficking, DSL	2e-04
3o4z_A	647	Telomere length regulation protein TEL2; heat like	4e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-04
1sig_A	339	Sigma70, RNA polymerase primary sigma factor; RNA	5e-04
1sig_A	339	Sigma70, RNA polymerase primary sigma factor; RNA	9e-04
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	6e-04
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	6e-04
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	8e-04
1qkl_A	127	RPB6, DNA-directed RNA polymerase II 14.4 KD polyp	7e-04

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 29/58 (50%), Positives = 36/58 (62%)

Query: 76  HSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
           H S+     VTCD +YYG GC   CRPRDD FGHY C   G++ C+ GW G  C +A+
Sbjct: 10  HGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAI 67

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 12/33 (36%), Positives = 24/33 (72%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           A +   ++D+++ D+D+D+++DDD   +DDD E
Sbjct: 364 ALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGE 396

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 10/32 (31%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           + +  +D+++ D+D+D+++DDD   +DDD + 
Sbjct: 366 EFEFEEDEEEADEDEDEEEDDDHGLEDDDGES 397

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +  +   D+++ D+D+D+++DDD   +DDD +  
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESA 398

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 6   GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           G     + + ++++ D+D+D+++DDD   +DDD +  E
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 10/37 (27%), Positives = 25/37 (67%)

Query: 7   EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +W+       + ++D+++ D+D+D+++DDD   +DD+
Sbjct: 358 DWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDD 394

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 10/32 (31%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           ++D  + D+D+D+++DDD   +DDD +  +++
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +D+   D+D+D+++DDD   +DDD +  ++ +
Sbjct: 371 EDEEEADEDEDEEEDDDHGLEDDDGESAEEQD 402

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 10/32 (31%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            +++ ++ D+D+D+++DDD   +DDD +  +E
Sbjct: 369 FEEDEEEADEDEDEEEDDDHGLEDDDGESAEE 400

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 11/32 (34%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D++  D+D+D+++DDD   +DDD +  ++ D+
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 10/32 (31%), Positives = 23/32 (71%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +++ ++D+D+++DDD   +DDD +  ++ DD 
Sbjct: 373 EEEADEDEDEEEDDDHGLEDDDGESAEEQDDF 404

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           ++ + D+D+++DDD   +DDD +  ++ DD  
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
           +D++ ++DDD   +DDD +  ++ DD     E    CK
Sbjct: 378 EDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECK 415

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +D+  +     D D +DDD    + D    DE
Sbjct: 224 EDEEGESGLSADGDSEDDDGSLGEVDLPLSDE 255

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
            D ++ + +     D D +DDD    + D    
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLS 253

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           D++       D D +DDD    + D    D+E
Sbjct: 225 DEEGESGLSADGDSEDDDGSLGEVDLPLSDEE 256

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
              +D   +     D D +DDD    + D    +
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSD 254

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
            A  D  D++ +     D D +DDD    + D  +
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPL 252

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 7/37 (18%), Positives = 17/37 (45%)

Query: 7   EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +++     + +D++ +     D D +DDD    + D 
Sbjct: 214 KYYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDL 250

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 9   WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           + A+   + +D++ +     D D +DDD    + ++
Sbjct: 215 YYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDL 250

>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 142

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 5/37 (13%), Positives = 18/37 (48%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
          M+D + ++    D    +++ D+ +  D++   +  +
Sbjct: 1  MSDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGV 37

>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens} Length = 360

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 5/37 (13%), Positives = 17/37 (45%)

Query: 7   EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +     D  +   +D ++++ D+ + +DD      ++
Sbjct: 193 QAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQ 229

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 12  DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
               + D+   + DD DDD    + ++D  DE ++ C       T  RW
Sbjct: 210 SALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARW 258

>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} Length = 357

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT-----CKTLISRLTTQR 59
           + +     D  +   +++ D D+ D  D++ D D D+  + ++        + +      
Sbjct: 57  EKKTENGKDTESWGWNENQDSDEHDGWDEELDIDVDNVPIQVSVFVQSAAKVFTEFEQGC 116

Query: 60  WLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHY 91
              +G S  E  +    + +   +        
Sbjct: 117 -DTIGRSKVESIYLYKFNLLQTAFFAMVSEKV 147

>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats, protein binding; 3.10A {Saccharomyces cerevisiae} Length = 647

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 5/40 (12%), Positives = 11/40 (27%)

Query: 3   MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
           M   +         + D   +  +   + + DD   D   
Sbjct: 345 MFIAKLLSGGHLKYESDFKINIPNVKFESNSDDKIIDFQS 384

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 1   MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
            +  D  +   D+D +++  D D  DDDD   DD+  DDDD 
Sbjct: 304 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 9   WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
           +  DD++ D++  D D  DDDD   DD+  DDDD 
Sbjct: 311 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345

>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1 Length = 339

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
           A    ++   +D DDD+D+D++D DDD  DDD  I
Sbjct: 69  ATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI 103

>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1 Length = 339

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
                  +   +D DDD+D+D++D DDD  DD+  I  +    +  
Sbjct: 68  TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 113

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 3/35 (8%), Positives = 14/35 (40%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
            + ++N    D D      +++ + +  + ++   
Sbjct: 294 IESESNSIVSDVDSSYSSSENNSNYNSYESNNSAY 328

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 3/35 (8%), Positives = 14/35 (40%)

Query: 10  MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
           +  + N+   D D      +++ + +  + ++   
Sbjct: 294 IESESNSIVSDVDSSYSSSENNSNYNSYESNNSAY 328

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 2/33 (6%), Positives = 12/33 (36%)

Query: 11  ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
             +  ++    D D      +++ + +  + + 
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNN 325

>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2 Length = 127

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
          M+D+++N D DD DD ++D+  DD ++ +++  E +
Sbjct: 1  MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENV 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.43
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.16
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.09
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.01
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.94
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.92
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.92
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.88
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.79
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.77
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.57
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.55
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.55
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.42
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.42
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.37
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.37
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.32
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.31
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.3
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.24
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.08
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.96
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.87
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.86
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.76
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.75
2bou_A	143	EGF-like module containing mucin-like hormone rece	97.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.63
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.6
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.57
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.56
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.56
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.56
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.48
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	97.47
2vh0_B	134	Activated factor XA light chain; serine protease,	97.42
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.37
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.35
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	97.33
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.31
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	97.29
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	97.25
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	97.22
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.17
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.15
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	97.07
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.05
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.03
2vh0_B	134	Activated factor XA light chain; serine protease,	96.96
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.93
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.85
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.49
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	96.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.19
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.03
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	96.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	95.94
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	95.92
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	95.81
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.81
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.77
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	95.61
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	95.3
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.11
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	94.95
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	94.68
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.4
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	94.3
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.28
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	94.24
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	94.02
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	93.84
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	93.77
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	93.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.41
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	93.18
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	93.07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	93.04
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	93.01
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	92.68
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	92.23
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	92.13
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	91.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	91.76
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	91.63
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	91.62
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	91.11
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	90.63
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	90.47
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	90.39
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	90.16
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	90.01
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	89.67
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	86.91
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	86.76
2ddu_A	387	Reelin; beta-jelly-roll, signaling protein; 2.05A	86.62
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	85.76
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	85.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.18
3t3p_B	472	Integrin beta-3; integrin, cell adhesion, blood cl	84.88
3g5c_A	510	ADAM 22; alpha/beta fold, cross-linked domain, cel	82.69
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	82.27
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	81.73
3v4v_B	503	Integrin beta-7; cell adhesion, madcam-1, membrane	80.61

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.43  E-value=2.6e-14  Score=110.98  Aligned_cols=83  Identities=36%  Similarity=0.744  Sum_probs=59.8

Q ss_pred             eeceeEEEecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCC
Q psy10880         78 SMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPS  157 (166)
Q Consensus        78 ~l~~~~r~~C~~gyyG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G  157 (166)
                      .+...++++|.++|+|..|+..|.+.....+|++|..+|+|+|.+||+|..|+.++|...+ .+.+|.|..+++|.|++|
T Consensus        12 ~~~~~~~c~C~~g~~G~~C~~~C~~~~~c~~~g~C~~~g~C~C~~G~~G~~C~~~~C~~~C-~~~~g~C~~~~~C~C~~G   90 (169)
T 2vj2_A           12 SIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGC-SPKHGSCKLPGDCRCQYG   90 (169)
T ss_dssp             ---------CCTTEETTTTCEECCCEEETTEEEEECSSCCEEECTTEESTTSCEECCCTTC-CTTTEECSSTTCCEECTT
T ss_pred             ccccCeeeeCCCcCcCCCcccccCCCCCcCCCCEeCCCCeeECCCCCcCCCCCCCCCCCCC-CCCCcccCCCCeeECCCC
Confidence            3456778899999999999888887666778899988899999999999999887776432 224567877888888888


Q ss_pred             CccC
Q psy10880        158 MQLY  161 (166)
Q Consensus       158 ~~G~  161 (166)
                      |+|.
T Consensus        91 ~~G~   94 (169)
T 2vj2_A           91 WQGL   94 (169)
T ss_dssp             EESS
T ss_pred             CCCC
Confidence            8876

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.16  E-value=3.9e-11  Score=89.33  Aligned_cols=92  Identities=17%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             ccccceeeec--eeEEEecCCCCCCCCCCC---------------CCCCCCCCCCcccCC----------CCCCccCCCC
Q psy10880         71 EHKSAHSSML--YEYRVTCDPHYYGNGCAT---------------LCRPRDDSFGHYTCS----------HTGDRKCLPG  123 (166)
Q Consensus        71 ~~~~~~~~l~--~~~r~~C~~gyyG~~C~~---------------~C~p~~~~~ghy~C~----------~~G~c~C~~G  123 (166)
                      .+.+..+...  .+|+|.|+++|.|..|+.               .|.+.. ...+.+|.          ..+.|+|++|
T Consensus         9 ~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~-C~~~g~C~~~~~~~~~~~~~~~C~C~~G   87 (143)
T 4d90_A            9 ENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP-CHNGGTCEISEAYRGDTFIGYVCKCPRG   87 (143)
T ss_dssp             GGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCC-CCTTCEEEECCCEETTEECCEEEECCTT
T ss_pred             CCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCC-CCCCCEecCCCccccCCCCCeEeECcCC
Confidence            3445555443  478999999999999975               243321 22345665          1357899999


Q ss_pred             CCCCCCCccccCCCCCCCCC-CccCC---CCceeCCCCCccCCCC
Q psy10880        124 WSGDYCTKAVQKLSPTKALP-NRTSR---TLFCVLEPSMQLYGNC  164 (166)
Q Consensus       124 wtG~~C~~~iC~~~c~~c~n-G~C~~---~~~C~C~~G~~G~~~~  164 (166)
                      |+|..|++.+-.+...+|.+ +.|..   .|+|.|++||+|. ++
T Consensus        88 ~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~-~c  131 (143)
T 4d90_A           88 FNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR-NC  131 (143)
T ss_dssp             EESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBST-TS
T ss_pred             CcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccC-Cc
Confidence            99999986664444445554 67763   4899999999998 44

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.11  E-value=5e-11  Score=88.87  Aligned_cols=94  Identities=20%  Similarity=0.378  Sum_probs=68.3

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCccccCCCCCCCCC
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKAVQKLSPTKALP  143 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~iC~~~c~~c~n  143 (166)
                      ..+.+..+....+|+|.|.++|+|..|..   .|.... ...+.+|..   .+.|+|.+||+|..|+..+-.+...+|.+
T Consensus        15 C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~-C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~   93 (135)
T 2vj3_A           15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP-CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLH   93 (135)
T ss_dssp             SSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCC-CCSSCEEEECSSCEEEECCTTEESSSSCEECCTTTTCCSTT
T ss_pred             CCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCC-CCCCCEEeCCCCCceeeCCCCCcCCcceecCCcccCCCcCC
Confidence            44556777777889999999999999974   476432 233456753   24789999999999987663443445554


Q ss_pred             -CccC---CCCceeCCCCCccCCCCC
Q psy10880        144 -NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       144 -G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                       +.|.   ..|+|.|++||+|. .|+
T Consensus        94 ~g~C~~~~g~~~C~C~~G~~G~-~C~  118 (135)
T 2vj3_A           94 NGRCLDKINEFQCECPTGFTGH-LCQ  118 (135)
T ss_dssp             TCEEEECSSCEEEECCTTEESS-SSC
T ss_pred             CCEeECCCCCeEEECCCCCcCC-ccC
Confidence             6776   35899999999997 553

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.09  E-value=1e-10  Score=99.53  Aligned_cols=77  Identities=23%  Similarity=0.464  Sum_probs=62.7

Q ss_pred             eEEEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCC-CCccCCCCceeCCCCCc
Q psy10880         82 EYRVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKAL-PNRTSRTLFCVLEPSMQ  159 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~-nG~C~~~~~C~C~~G~~  159 (166)
                      .++|.|.+||+|..|+. .|.+  ....+++|...+.|+|.+||+|..|+...|..   +|+ +|.|...++|.|++||+
T Consensus       164 ~~~C~C~~G~~G~~C~~~~C~~--~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~---~C~~~G~C~~~~~C~C~~G~~  238 (324)
T 2ygq_A          164 RRICECPDGFHGPHCEKALCTP--RCMNGGLCVTPGFCICPPGFYGVNCDKANCST---TCFNGGTCFYPGKCICPPGLE  238 (324)
T ss_dssp             TSCEECCTTEESSSSCEESSSS--CCCTTCEECSSCCEECCTTCBTTTTCBCCCSS---CCCSSCCBSCSSCBCCCTTCC
T ss_pred             CCeEECCCCCcCCCCCCCCCCC--CCCCCCEEcCCCEEeCCCCccCCCcccCcCCC---CCCCCCeeCCCCeeeCCCCcc
Confidence            47899999999999987 6765  34457889888999999999999999887753   344 47888889999999999


Q ss_pred             cCCCC
Q psy10880        160 LYGNC  164 (166)
Q Consensus       160 G~~~~  164 (166)
                      |. .|
T Consensus       239 G~-~C  242 (324)
T 2ygq_A          239 GE-QC  242 (324)
T ss_dssp             TT-TT
T ss_pred             CC-CC
Confidence            87 44

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=97.95  Aligned_cols=75  Identities=23%  Similarity=0.403  Sum_probs=38.2

Q ss_pred             eEEEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCC-CCccCCCCceeCCCCCc
Q psy10880         82 EYRVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKAL-PNRTSRTLFCVLEPSMQ  159 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~-nG~C~~~~~C~C~~G~~  159 (166)
                      .++|.|.+||+|..|+. .|..  ...++++|...+.|+|.+||+|..|+...|.   .+|+ +|.|...++|.|++||+
T Consensus       196 ~~~C~C~~G~~G~~C~~~~C~~--~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~---~~C~~~g~C~~~~~C~C~~G~~  270 (324)
T 2ygq_A          196 PGFCICPPGFYGVNCDKANCST--TCFNGGTCFYPGKCICPPGLEGEQCEISKCP---QPCRNGGKCIGKSKCKCSKGYQ  270 (324)
T ss_dssp             SCCEECCTTCBTTTTCBCCCSS--CCCSSCCBSCSSCBCCCTTCCTTTTC------------------------------
T ss_pred             CCEEeCCCCccCCCcccCcCCC--CCCCCCeeCCCCeeeCCCCccCCCCCcCcCC---CcCCCCCEECCCCEEECCCCCc
Confidence            47899999999999986 5653  3445778877888999999999999876664   2344 35777778888888888


Q ss_pred             cC
Q psy10880        160 LY  161 (166)
Q Consensus       160 G~  161 (166)
                      |.
T Consensus       271 G~  272 (324)
T 2ygq_A          271 GD  272 (324)
T ss_dssp             --
T ss_pred             CC
Confidence            76

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.94  E-value=4.2e-10  Score=87.06  Aligned_cols=46  Identities=37%  Similarity=0.827  Sum_probs=22.7

Q ss_pred             EEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCC
Q psy10880         84 RVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCT  130 (166)
Q Consensus        84 r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~  130 (166)
                      +|+|.++|+|..|+. .|.... ...|++|...+.|+|.+||+|..|+
T Consensus        51 ~C~C~~G~~G~~C~~~~C~~~C-~~~~g~C~~~~~C~C~~G~~G~~C~   97 (169)
T 2vj2_A           51 NKTCMEGWMGPECNRAICRQGC-SPKHGSCKLPGDCRCQYGWQGLYCD   97 (169)
T ss_dssp             CEEECTTEESTTSCEECCCTTC-CTTTEECSSTTCCEECTTEESSSSC
T ss_pred             eeECCCCCcCCCCCCCCCCCCC-CCCCcccCCCCeeECCCCCCCCCcc
Confidence            346666666666654 344311 0124445444555555555555554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.92  E-value=1.1e-10  Score=103.48  Aligned_cols=74  Identities=23%  Similarity=0.413  Sum_probs=39.2

Q ss_pred             EecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCC-CccCCCCceeCCCCCccCC
Q psy10880         85 VTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALP-NRTSRTLFCVLEPSMQLYG  162 (166)
Q Consensus        85 ~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~n-G~C~~~~~C~C~~G~~G~~  162 (166)
                      ..|..+|+|..|.. .|...  + .|++|...++|+|.+||+|.+|++..|..   +|+| |.|..+++|.|++||+|. 
T Consensus       379 ~~C~~~~~g~~c~~~~C~~~--C-~nG~C~~~~~C~C~~G~~G~~C~~~~C~~---~C~~~g~C~~~~~C~C~~G~~G~-  451 (463)
T 2wg3_C          379 EECRATVQPAQTLTSECSRL--C-RNGYCTPTGKCCCSPGWEGDFCRTAKCEP---ACRHGGVCVRPNKCLCKKGYLGP-  451 (463)
T ss_dssp             GGGCCCCCCCCCCCCHHHHH--C-CSEEECTTSCEEECTTEESTTSCEECC-----------------------------
T ss_pred             ccCCCCCcCCCCccccccCC--C-CCCccCCCCeECCCCCcCCCcCCcCcCCC---CCCCCCEECCCCEEECCCCcccC-
Confidence            58999999999987 56542  2 25799888999999999999999888875   5555 689888999999999998 


Q ss_pred             CCC
Q psy10880        163 NCA  165 (166)
Q Consensus       163 ~~~  165 (166)
                      .|+
T Consensus       452 ~C~  454 (463)
T 2wg3_C          452 QCE  454 (463)
T ss_dssp             ---
T ss_pred             CCC
Confidence            665

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.92  E-value=9.4e-10  Score=96.78  Aligned_cols=82  Identities=22%  Similarity=0.420  Sum_probs=59.9

Q ss_pred             ceeEEEecCCCCCCCCCCCCCCCCCCCCCcccCCC-CCCccCCCCCCCCCCCccc--------cCCC---CCCCCC-Ccc
Q psy10880         80 LYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSH-TGDRKCLPGWSGDYCTKAV--------QKLS---PTKALP-NRT  146 (166)
Q Consensus        80 ~~~~r~~C~~gyyG~~C~~~C~p~~~~~ghy~C~~-~G~c~C~~GwtG~~C~~~i--------C~~~---c~~c~n-G~C  146 (166)
                      ...+.|.|.++|+|..|+..|.|   +.++++|.. .|.|+|.+||+|.+|+..+        |...   ...|.+ +.|
T Consensus       182 ~~~~~c~C~~g~~G~~C~~~C~~---C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C  258 (423)
T 2gy5_A          182 TRLIVRRCEAQKWGPECNHLCTA---CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC  258 (423)
T ss_dssp             EEEEECSSCTTEESTTSCEECCC---CCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEE
T ss_pred             ccccCCcCCCCCCCCCCCCCCCC---CCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEE
Confidence            34567899999999999987764   335789986 7999999999999998642        2211   112332 455


Q ss_pred             C-CCCceeCCCCCccCCCCC
Q psy10880        147 S-RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       147 ~-~~~~C~C~~G~~G~~~~~  165 (166)
                      . ..|+|.|++||+|. .|+
T Consensus       259 ~~~~~~C~C~~G~~G~-~C~  277 (423)
T 2gy5_A          259 LPDPYGCSCATGWKGL-QCN  277 (423)
T ss_dssp             ETTTTEEECCBTCBSG-GGC
T ss_pred             CCCCCeEEeCCCcccc-ccc
Confidence            4 46999999999987 443

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.88  E-value=5.9e-10  Score=78.45  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             eEEEecCCCCCCCCCCC-CCCCC--CCCCCcccCCCCCCccCCCCCCCCCCC-ccccCCCCCCCCC-CccC-----CCCc
Q psy10880         82 EYRVTCDPHYYGNGCAT-LCRPR--DDSFGHYTCSHTGDRKCLPGWSGDYCT-KAVQKLSPTKALP-NRTS-----RTLF  151 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~-~C~p~--~~~~ghy~C~~~G~c~C~~GwtG~~C~-~~iC~~~c~~c~n-G~C~-----~~~~  151 (166)
                      +|+|.|.++|.|..|.. .|..+  ....+.|+|      +|++||+  .|+ ..+-.+...+|+| |.|.     ..|+
T Consensus         1 sy~C~C~~g~~g~~c~~~~c~~~pC~n~~~~y~C------~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~   72 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYC------WCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFV   72 (91)
T ss_dssp             CCCCCCBCSSSCCBCCSSCEEEEECSSSSCEEEE------ECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEE
T ss_pred             CeeeECCCCCcCCeECCCcccCCccccCCCCcEe------ECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeE
Confidence            58899999999998875 34322  122345666      9999998  897 3442333445665 6775     4589


Q ss_pred             eeCCCCCccCCCCC
Q psy10880        152 CVLEPSMQLYGNCA  165 (166)
Q Consensus       152 C~C~~G~~G~~~~~  165 (166)
                      |.|++||+|. .|+
T Consensus        73 C~C~~G~~G~-~Ce   85 (91)
T 1tpg_A           73 CQCPEGFAGK-SCE   85 (91)
T ss_dssp             EECCTTCBSS-SCC
T ss_pred             eECCCCCcCC-cCC
Confidence            9999999997 664

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.79  E-value=3.2e-09  Score=93.36  Aligned_cols=83  Identities=23%  Similarity=0.439  Sum_probs=58.8

Q ss_pred             eeEEEecCCCCCCCCCCCCCCC-------------CCCCCCcccCCC-CCCccCCCCCCCCCCCcc--------ccCCCC
Q psy10880         81 YEYRVTCDPHYYGNGCATLCRP-------------RDDSFGHYTCSH-TGDRKCLPGWSGDYCTKA--------VQKLSP  138 (166)
Q Consensus        81 ~~~r~~C~~gyyG~~C~~~C~p-------------~~~~~ghy~C~~-~G~c~C~~GwtG~~C~~~--------iC~~~c  138 (166)
                      ..++|.|.+||+|..|+..|.+             ......+.+|.. .+.|.|.+||+|.+|+..        .|... 
T Consensus       214 ~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~-  292 (423)
T 2gy5_A          214 DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR-  292 (423)
T ss_dssp             TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCB-
T ss_pred             CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcCCccccc-
Confidence            4678999999999999875432             111222345543 689999999999999862        13222 


Q ss_pred             CCCCC-CccCCCCceeCCCCCccCCCCC
Q psy10880        139 TKALP-NRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~n-G~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      ++|++ |.|...+.|.|++||+|. .|+
T Consensus       293 C~C~ngg~C~~~~~C~C~~G~~G~-~Ce  319 (423)
T 2gy5_A          293 CSCNNGEMCDRFQGCLCSPGWQGL-QCE  319 (423)
T ss_dssp             CCCTTCCEEETTTEEECCTTCBST-TSC
T ss_pred             ccCCCCCEecCCCceECCCCCcCC-CCc
Confidence            25554 678877789999999997 564

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.77  E-value=3.8e-09  Score=98.20  Aligned_cols=89  Identities=19%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             cceeeeceeEE---EecCCCCCCCCCCC-----------CCCCCC---CCCCcccCCCCCCccCC----CCCCCCCCCcc
Q psy10880         74 SAHSSMLYEYR---VTCDPHYYGNGCAT-----------LCRPRD---DSFGHYTCSHTGDRKCL----PGWSGDYCTKA  132 (166)
Q Consensus        74 ~~~~~l~~~~r---~~C~~gyyG~~C~~-----------~C~p~~---~~~ghy~C~~~G~c~C~----~GwtG~~C~~~  132 (166)
                      +.+......+.   |.|.+||+|..|+.           .|.+..   .+.++++|. .|.|+|.    +||+|.+|+..
T Consensus       446 ~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-~g~C~C~~~~~~Gy~G~~Ce~~  524 (690)
T 3fcs_B          446 HRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-CGQCVCHSSDFGKITGKYCECD  524 (690)
T ss_dssp             TTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEEC-SSSEEECCCSSCCCBSTTSCBC
T ss_pred             CcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEE-CCeeEeecCCCCCeeCCCcCcc
Confidence            34443344555   99999999999964           266432   144678886 6999999    99999999754


Q ss_pred             c--cCCC-CCCCC-CCccCCCCceeCCCCCccCCCCC
Q psy10880        133 V--QKLS-PTKAL-PNRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       133 i--C~~~-c~~c~-nG~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      +  |... ..+|+ +|.|.. |+|.|++||+|. .|+
T Consensus       525 ~~~C~~~~~~~C~~~G~C~~-g~C~C~~Gy~G~-~Ce  559 (690)
T 3fcs_B          525 DFSCVRYKGEMCSGHGQCSC-GDCLCDSDWTGY-YCN  559 (690)
T ss_dssp             SSCCCBSSSSBGGGSEEEET-TEEEECTTEESS-SSC
T ss_pred             cCcCcCCCCCCCCCCCEecC-CeeECcCCCcCC-CCc
Confidence            3  4421 12344 356755 899999999987 443

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.57  E-value=2.5e-08  Score=92.73  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=58.5

Q ss_pred             EEEecC------CCCCCCCCCC---CCCCC--CCCCC--cccCCCCCCccCCCCCCCCCCCcc----ccCCC-CCCCCC-
Q psy10880         83 YRVTCD------PHYYGNGCAT---LCRPR--DDSFG--HYTCSHTGDRKCLPGWSGDYCTKA----VQKLS-PTKALP-  143 (166)
Q Consensus        83 ~r~~C~------~gyyG~~C~~---~C~p~--~~~~g--hy~C~~~G~c~C~~GwtG~~C~~~----iC~~~-c~~c~n-  143 (166)
                      .+|.|.      ++|+|..|+.   .|...  ..+.+  |++|. .|+|+|.+||+|.+|+.+    .|... ..+|++ 
T Consensus       493 G~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~-~g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~  571 (687)
T 3k6s_B          493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF-CGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGR  571 (687)
T ss_dssp             TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEE-TTEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSS
T ss_pred             CEEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEE-CCEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Confidence            389999      9999999972   57642  11345  78885 589999999999999843    34431 224554 


Q ss_pred             CccCCCCceeCCCCCccCCCCC
Q psy10880        144 NRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       144 G~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      |.|.. ++|.|++||+|. .|+
T Consensus       572 G~C~~-g~C~C~~Gy~G~-~Ce  591 (687)
T 3k6s_B          572 GRCRC-NVCECHSGYQLP-LCQ  591 (687)
T ss_dssp             CCBCS-SCBCCSTTCCTT-TTC
T ss_pred             CcCCC-CEEECCCCCcCC-CCC
Confidence            66755 899999999998 665

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.55  E-value=2.3e-08  Score=92.92  Aligned_cols=81  Identities=25%  Similarity=0.414  Sum_probs=58.2

Q ss_pred             eEEEecC----CCCCCCCCCC---CCCCC--CCCCCcccCCCCCCccCCCCCCCCCCC----ccccCCC-CCCCCC-Ccc
Q psy10880         82 EYRVTCD----PHYYGNGCAT---LCRPR--DDSFGHYTCSHTGDRKCLPGWSGDYCT----KAVQKLS-PTKALP-NRT  146 (166)
Q Consensus        82 ~~r~~C~----~gyyG~~C~~---~C~p~--~~~~ghy~C~~~G~c~C~~GwtG~~C~----~~iC~~~-c~~c~n-G~C  146 (166)
                      .++|.|.    ++|+|..|+.   .|...  ..+.+|++|.. |.|+|.+||+|.+|+    ...|... ..+|++ |.|
T Consensus       503 ~g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~-g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C  581 (690)
T 3fcs_B          503 CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKC  581 (690)
T ss_dssp             SSSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET-TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEE
T ss_pred             CCeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC-CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEE
Confidence            3689999    9999999973   57642  12445788854 999999999999998    2334431 134554 567


Q ss_pred             CCCCceeC-CCCCccCCCCC
Q psy10880        147 SRTLFCVL-EPSMQLYGNCA  165 (166)
Q Consensus       147 ~~~~~C~C-~~G~~G~~~~~  165 (166)
                      .. ++|.| ++||+|. .|+
T Consensus       582 ~~-g~C~C~~~Gy~G~-~Ce  599 (690)
T 3fcs_B          582 EC-GSCVCIQPGSYGD-TCE  599 (690)
T ss_dssp             ET-TEEECCSTTCBST-TSC
T ss_pred             eC-CEEECCCCCccCC-CcC
Confidence            54 79999 9999997 554

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.55  E-value=1e-08  Score=83.11  Aligned_cols=80  Identities=23%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             EEEecCCCCCCCCCCC------------CCCCC---CCCCCcccCCCCCCccCCCCC------CCCCCCccc--cCCC-C
Q psy10880         83 YRVTCDPHYYGNGCAT------------LCRPR---DDSFGHYTCSHTGDRKCLPGW------SGDYCTKAV--QKLS-P  138 (166)
Q Consensus        83 ~r~~C~~gyyG~~C~~------------~C~p~---~~~~ghy~C~~~G~c~C~~Gw------tG~~C~~~i--C~~~-c  138 (166)
                      .+|.|.++|+|..|+.            .|...   ....+|++|. .|.|+|.+||      +|.+|+..+  |... .
T Consensus       107 g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~-~g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g  185 (217)
T 2p28_B          107 GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYNG  185 (217)
T ss_dssp             TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEE-TTEEEECCCCSTTCCEESTTSCEESSCSCEETT
T ss_pred             CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEe-CCceECCCCCCCcccEECCCcccCCccCCCCCC
Confidence            5899999999999973            25421   2234678885 6899999995      999998543  4432 1


Q ss_pred             CCCC-C--CccCCCCceeCCCCCccCCCCC
Q psy10880        139 TKAL-P--NRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~-n--G~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      .+|+ +  |.|. .++|.|.+||+|. .|+
T Consensus       186 ~~C~~~~~G~C~-~g~C~C~~G~~G~-~C~  213 (217)
T 2p28_B          186 QVCGGPGRGLCF-CGKCRCHPGFEGS-ACQ  213 (217)
T ss_dssp             EETTCTTTEEEE-TTEEEECTTEEST-TSC
T ss_pred             CCCCCCCCcEEe-CCeeECCCCCccC-CcC
Confidence            1243 3  6675 4799999999998 554

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.42  E-value=4.7e-08  Score=90.89  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             eEEEecCCCCCCCCCCC------------CCCCCC---CCCCcccCCCCCCccCC------CCCCCCCCCcc--ccCCC-
Q psy10880         82 EYRVTCDPHYYGNGCAT------------LCRPRD---DSFGHYTCSHTGDRKCL------PGWSGDYCTKA--VQKLS-  137 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~------------~C~p~~---~~~ghy~C~~~G~c~C~------~GwtG~~C~~~--iC~~~-  137 (166)
                      ..+|.|.+||+|..|+.            .|.+..   .+.+|++|. .|.|+|.      +||+|.+|+..  .|... 
T Consensus       445 ~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-~G~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~  523 (687)
T 3k6s_B          445 CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYN  523 (687)
T ss_dssp             SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE-TTEEEECCCCSTTCCEESTTSCEESSCSCEET
T ss_pred             CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEe-CCEEEcCCCCCCCCCccccccccccccccCCC
Confidence            35789999999999982            376432   145688886 7899999      99999999843  34421 


Q ss_pred             CCCCC---CCccCCCCceeCCCCCccCCCCC
Q psy10880        138 PTKAL---PNRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~---nG~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      ...|+   +|.|. .++|.|++||+|. .|+
T Consensus       524 ~~~C~~~~~G~C~-~g~C~C~~G~~G~-~Ce  552 (687)
T 3k6s_B          524 GQVCGGPGRGLCF-CGKCRCHPGFEGS-ACQ  552 (687)
T ss_dssp             TEETSHHHHEEEE-TTEEEECTTCCST-TSC
T ss_pred             CcCcCCCCCCeEE-CCEEEcCCCCcCC-CCc
Confidence            12344   35665 4799999999998 554

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.42  E-value=8.7e-08  Score=71.87  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=60.1

Q ss_pred             cceeeeceeEEEecCCCCCCCCCCCCCCCCCC---------------------------CCC---cccCCC-CCCccCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYYGNGCATLCRPRDD---------------------------SFG---HYTCSH-TGDRKCLP  122 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyyG~~C~~~C~p~~~---------------------------~~g---hy~C~~-~G~c~C~~  122 (166)
                      +..+.+..+|+|.|+++|.|..+...|.....                           ..+   .+.|.. ...|+|++
T Consensus        15 g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g~~C~~c~~~C~C~~   94 (147)
T 2w86_A           15 GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGK   94 (147)
T ss_dssp             SEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEETTTTEECCCCTTTCT
T ss_pred             CEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccCCCcccCCCcccCCC
Confidence            56788888999999999998877655532110                           000   011111 14669999


Q ss_pred             CCC---CCCCCccc--cCCCCCCCCCCccCC---CCceeCCCCCccCCC
Q psy10880        123 GWS---GDYCTKAV--QKLSPTKALPNRTSR---TLFCVLEPSMQLYGN  163 (166)
Q Consensus       123 Gwt---G~~C~~~i--C~~~c~~c~nG~C~~---~~~C~C~~G~~G~~~  163 (166)
                      ||+   |..|. .|  |...+.+|+++.|.+   .|+|.|++||+|.+.
T Consensus        95 Gy~~~~g~~C~-dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~  142 (147)
T 2w86_A           95 GYSRIKGTQCE-DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDAT  142 (147)
T ss_dssp             TEEEEETTEEE-ECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTT
T ss_pred             ccccCCCCccC-ccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCC
Confidence            995   99996 34  554455566677863   499999999999853

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.37  E-value=4.4e-08  Score=76.09  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             cccccceeeec-----eeEEEecCCCCCCCCCC---CCCCCCCCCCCcccCC----C---CCCccCCCCCCC-----CCC
Q psy10880         70 DEHKSAHSSML-----YEYRVTCDPHYYGNGCA---TLCRPRDDSFGHYTCS----H---TGDRKCLPGWSG-----DYC  129 (166)
Q Consensus        70 ~~~~~~~~~l~-----~~~r~~C~~gyyG~~C~---~~C~p~~~~~ghy~C~----~---~G~c~C~~GwtG-----~~C  129 (166)
                      ..+.+..+.+.     .+|+|.|.+||.|..|.   ..|.... ...+.+|.    .   ...|+|.+||+|     ..|
T Consensus        56 C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~d~C~~~~-C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C  134 (186)
T 1z1y_A           56 CGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXN-CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXC  134 (186)
T ss_dssp             EETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEEGGGTTCC-CCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEE
T ss_pred             CCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCCCcCcCCC-CCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcc
Confidence            33446677776     79999999999998663   2465432 33356775    2   248899999999     788


Q ss_pred             Ccc-ccCCCCCCC-C-CCccC---CCCceeCCCCCccCC
Q psy10880        130 TKA-VQKLSPTKA-L-PNRTS---RTLFCVLEPSMQLYG  162 (166)
Q Consensus       130 ~~~-iC~~~c~~c-~-nG~C~---~~~~C~C~~G~~G~~  162 (166)
                      ... +..+. .+| . ++.|.   ..|+|.|++||+|.+
T Consensus       135 ~~~~~~~C~-~~C~~~~~~C~n~~g~y~C~C~~G~~g~~  172 (186)
T 1z1y_A          135 TXTGETACQ-LXCNTDNEVCXNVEGVYXCQCMEGFTFDX  172 (186)
T ss_dssp             EEEECCCCC-CCCCTTTEEEEEETTEEEEEECTTCEEET
T ss_pred             eEcCCCccc-ccccccCcceecCCCCeeeECCCCCccCc
Confidence            754 22222 255 3 46776   348999999999984

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.37  E-value=3.5e-08  Score=72.09  Aligned_cols=83  Identities=17%  Similarity=0.326  Sum_probs=55.8

Q ss_pred             ceeee-ceeEEEecCCCCCCCCC-----CCCCCCCCCCCCcccCCC--CCCccCCCCCC---CCCCCccc--cCCCCCCC
Q psy10880         75 AHSSM-LYEYRVTCDPHYYGNGC-----ATLCRPRDDSFGHYTCSH--TGDRKCLPGWS---GDYCTKAV--QKLSPTKA  141 (166)
Q Consensus        75 ~~~~l-~~~~r~~C~~gyyG~~C-----~~~C~p~~~~~ghy~C~~--~G~c~C~~Gwt---G~~C~~~i--C~~~c~~c  141 (166)
                      ..+.+ ..+|+|.|++||.|..+     ...|.... .  ..+|..  ...|+|++||+   |..|. .|  |.. ..+|
T Consensus        15 ~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~-C--~~~C~~~~~y~C~C~~Gy~~~~g~~C~-dideC~~-~~~C   89 (118)
T 1dx5_I           15 QCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTA-C--PADCDPNTQASCECPEGYILDDGFICT-DIDECEN-GGFC   89 (118)
T ss_dssp             EEEECSSSCEEEECCTTEEEETTEEEEEEECCCSSE-E--ECEECTTSTTCEECCTTEEEETTTEEE-ECCHHHH-CSSC
T ss_pred             CCCCCCCCCEEeECCCCccccCCCCCccccccCCCC-C--CCcccCCCCeEeECCCCccCCCCCccc-cccccCC-CCCC
Confidence            46666 67899999999999854     33343211 0  123433  34679999999   88994 34  443 1455


Q ss_pred             CCCccC---CCCceeCCCCCccCCC
Q psy10880        142 LPNRTS---RTLFCVLEPSMQLYGN  163 (166)
Q Consensus       142 ~nG~C~---~~~~C~C~~G~~G~~~  163 (166)
                       ++.|.   ..|+|.|++||+|.+.
T Consensus        90 -~~~C~n~~g~y~C~C~~G~~g~~~  113 (118)
T 1dx5_I           90 -SGVCHNLPGTFECICGPDSALAGQ  113 (118)
T ss_dssp             -SSEEEECSSSEEEEECSSSSCEEE
T ss_pred             -cCeEEeCCCCEEEECCCCCccCCC
Confidence             56775   3599999999998764

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.32  E-value=3.3e-07  Score=84.52  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             cccccceeeece-eEEE-ecCCCCCC--CCCCC--CCCCCCC-CCCcc---cCCC---CCCcc-CCCCCCCCCCC-----
Q psy10880         70 DEHKSAHSSMLY-EYRV-TCDPHYYG--NGCAT--LCRPRDD-SFGHY---TCSH---TGDRK-CLPGWSGDYCT-----  130 (166)
Q Consensus        70 ~~~~~~~~~l~~-~~r~-~C~~gyyG--~~C~~--~C~p~~~-~~ghy---~C~~---~G~c~-C~~GwtG~~C~-----  130 (166)
                      ..+.+.++.+.. +|+| .|++||.|  ..|..  .|..... +..+.   +|..   ..+|. |++||+|..|.     
T Consensus        11 C~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~   90 (634)
T 1yo8_A           11 CFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLE   90 (634)
T ss_dssp             SCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSH
T ss_pred             CCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCcccccccc
Confidence            445567777764 5999 99999998  78874  5764331 22223   5653   24788 99999999875     


Q ss_pred             ---------ccc--cCCCCCCCCC-CccC-------CCCceeCCCCCccCC
Q psy10880        131 ---------KAV--QKLSPTKALP-NRTS-------RTLFCVLEPSMQLYG  162 (166)
Q Consensus       131 ---------~~i--C~~~c~~c~n-G~C~-------~~~~C~C~~G~~G~~  162 (166)
                               +.+  |.....+|.+ +.|.       ..|+|.|++||+|.|
T Consensus        91 ~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG  141 (634)
T 1yo8_A           91 AAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDG  141 (634)
T ss_dssp             HHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESS
T ss_pred             ccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccC
Confidence                     122  5443456654 5675       348999999999965

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.31  E-value=2.5e-08  Score=77.50  Aligned_cols=85  Identities=11%  Similarity=0.126  Sum_probs=58.1

Q ss_pred             cceeeeceeEEEecCCCCCCC---CCCC--CCCCC---CCCCCcccCCCC--------CCccCCCCCCCCCC--CccccC
Q psy10880         74 SAHSSMLYEYRVTCDPHYYGN---GCAT--LCRPR---DDSFGHYTCSHT--------GDRKCLPGWSGDYC--TKAVQK  135 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyyG~---~C~~--~C~p~---~~~~ghy~C~~~--------G~c~C~~GwtG~~C--~~~iC~  135 (166)
                      |..+.+..+|+|.|.+||.|.   .|..  .|...   .....+.+|...        ..|+|.+||+|..|  .+..|.
T Consensus        16 g~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~d~C~   95 (186)
T 1z1y_A           16 GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ   95 (186)
T ss_dssp             EEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEEGGGT
T ss_pred             CEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCCCcCc
Confidence            367777889999999999987   7754  46521   111223566432        26799999999855  333455


Q ss_pred             CCCCCCC-CCccC----C---CCceeCCCCCcc
Q psy10880        136 LSPTKAL-PNRTS----R---TLFCVLEPSMQL  160 (166)
Q Consensus       136 ~~c~~c~-nG~C~----~---~~~C~C~~G~~G  160 (166)
                      ..  +|. ++.|.    .   .|+|.|++||+|
T Consensus        96 ~~--~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g  126 (186)
T 1z1y_A           96 YX--NCGESGECIVEYLSEIQSAGCSCAIGXVP  126 (186)
T ss_dssp             TC--CCCTTEEEEEEEETTEEEEEEEECTEEEE
T ss_pred             CC--CCCCCCEEeeCCcCCCCCceEECCCCCcc
Confidence            44  455 46776    3   489999999999

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.30  E-value=3.8e-07  Score=81.40  Aligned_cols=80  Identities=20%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             ecCCCCCCCCCCC--CCCCC-----CCCCCcccCCC-CCCccCCCCCCCCCCCcc----------ccCCCCCCCCCC-c-
Q psy10880         86 TCDPHYYGNGCAT--LCRPR-----DDSFGHYTCSH-TGDRKCLPGWSGDYCTKA----------VQKLSPTKALPN-R-  145 (166)
Q Consensus        86 ~C~~gyyG~~C~~--~C~p~-----~~~~ghy~C~~-~G~c~C~~GwtG~~C~~~----------iC~~~c~~c~nG-~-  145 (166)
                      +|.+||||..|..  .|.+.     ....+...|+. .|.|+|.+||+|.+|++-          +-.+.+++|+++ . 
T Consensus       422 ~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~  501 (525)
T 4aqs_A          422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGAL  501 (525)
T ss_dssp             EECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC--------------------------
T ss_pred             CCCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCcc
Confidence            5777787777664  24322     11223456765 689999999999999741          111233445543 3 


Q ss_pred             ---cC-CCCceeCCCCCccCCCCCC
Q psy10880        146 ---TS-RTLFCVLEPSMQLYGNCAK  166 (166)
Q Consensus       146 ---C~-~~~~C~C~~G~~G~~~~~~  166 (166)
                         |. ..++|.|++||+|. .|++
T Consensus       502 ~~~C~~~tG~C~C~~G~~G~-~Ceq  525 (525)
T 4aqs_A          502 NNSCSEDSGQCSCLPHMIGR-QCNE  525 (525)
T ss_dssp             -------------------------
T ss_pred             CCccCCCCCeeECCCCCcCC-CCCC
Confidence               32 24799999999998 6653

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.24  E-value=1.5e-06  Score=66.88  Aligned_cols=78  Identities=22%  Similarity=0.353  Sum_probs=52.7

Q ss_pred             eeEEE-ecCCCCCCCCCCCCCCCC-----------------CCCCCc------ccCCC-CCCcc-CCCCCCCCCCCcccc
Q psy10880         81 YEYRV-TCDPHYYGNGCATLCRPR-----------------DDSFGH------YTCSH-TGDRK-CLPGWSGDYCTKAVQ  134 (166)
Q Consensus        81 ~~~r~-~C~~gyyG~~C~~~C~p~-----------------~~~~gh------y~C~~-~G~c~-C~~GwtG~~C~~~iC  134 (166)
                      ..++| .|.++|.|..|++ |.+.                 ....+|      .+|++ +|+|+ |.+||+|.+|++  |
T Consensus        16 g~~~C~~C~~g~~G~~Ce~-C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~g~~G~~Ce~--C   92 (162)
T 1klo_A           16 KEVVCTHCPTGTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR--C   92 (162)
T ss_dssp             CCEEECSCCTTEESTTSCE-ECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTTCCBCCBCTTEETTTTCE--E
T ss_pred             CCEEeCCCCCCCcCCCCcC-CCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCCCcccCCCCCCcCCCcCc--C
Confidence            46788 6999999999975 3321                 011223      46875 79995 999999999985  2


Q ss_pred             CC---------------CCCCCCC-C------ccCC-CCceeCCCCCccC
Q psy10880        135 KL---------------SPTKALP-N------RTSR-TLFCVLEPSMQLY  161 (166)
Q Consensus       135 ~~---------------~c~~c~n-G------~C~~-~~~C~C~~G~~G~  161 (166)
                      +.               ..+.|++ |      .|.. .++|.|++||+|.
T Consensus        93 ~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~~g~~G~  142 (162)
T 1klo_A           93 KEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGR  142 (162)
T ss_dssp             CTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTCCCCBCTTEEST
T ss_pred             chhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCCEeECCCCCcCC
Confidence            11               1233433 2      5654 6999999999987

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.08  E-value=2.5e-07  Score=70.43  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             cceeeeceeEEEecCCCCC----CCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYY----GNGCAT   98 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyy----G~~C~~   98 (166)
                      +..+.+..+|+|.|++||.    |..|..
T Consensus        15 ~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d   43 (162)
T 1uzk_A           15 GNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (162)
T ss_dssp             SEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             CEeECCCCCEEEeCCCCCeECCCCCcccC
Confidence            5678888899999999998    788864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.04  E-value=4.3e-07  Score=67.66  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             eEEEecCCCCCC---------CCCCC--CCCCCC--CCCCcccCCC---CCCccCCCCCCCCCCCc-----------cc-
Q psy10880         82 EYRVTCDPHYYG---------NGCAT--LCRPRD--DSFGHYTCSH---TGDRKCLPGWSGDYCTK-----------AV-  133 (166)
Q Consensus        82 ~~r~~C~~gyyG---------~~C~~--~C~p~~--~~~ghy~C~~---~G~c~C~~GwtG~~C~~-----------~i-  133 (166)
                      .|+|.|.+||.|         ..|..  .|....  ....+.+|..   ...|+|.+||+|..+..           .| 
T Consensus        18 ~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~did   97 (143)
T 2bou_A           18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVD   97 (143)
T ss_dssp             SSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECC
T ss_pred             CCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCcc
Confidence            389999999998         46743  465431  1223456653   24789999999874431           22 


Q ss_pred             -cCCCCCCCCC-CccC---CCCceeCCCCCccCC
Q psy10880        134 -QKLSPTKALP-NRTS---RTLFCVLEPSMQLYG  162 (166)
Q Consensus       134 -C~~~c~~c~n-G~C~---~~~~C~C~~G~~G~~  162 (166)
                       |.....+|.+ +.|.   ..|+|.|++||+|.-
T Consensus        98 eC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           98 ECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             HHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             CccCcCCCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence             4433345554 6776   358999999999974

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.96  E-value=3.5e-06  Score=62.30  Aligned_cols=62  Identities=19%  Similarity=0.500  Sum_probs=46.4

Q ss_pred             ccccceeeeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCccc
Q psy10880         71 EHKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus        71 ~~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~i  133 (166)
                      ...+..+.....|+|.|.++|.|..|..   .|.+.. ...+++|..   .+.|+|++||+|.+|++.+
T Consensus        54 ~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~-C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~i  121 (135)
T 2vj3_A           54 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKINEFQCECPTGFTGHLCQVDL  121 (135)
T ss_dssp             CSSCEEEECSSCEEEECCTTEESSSSCEECCTTTTCC-STTTCEEEECSSCEEEECCTTEESSSSCEEC
T ss_pred             CCCCEEeCCCCCceeeCCCCCcCCcceecCCcccCCC-cCCCCEeECCCCCeEEECCCCCcCCccCccC
Confidence            3445677777889999999999999974   476432 233466753   2478999999999998766

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.87  E-value=8.9e-06  Score=58.67  Aligned_cols=52  Identities=25%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cccCCC---CCCccCCCCCCCCCCCccc----cCCCCCCCCCCccC---CCCceeCCCCCccC
Q psy10880        109 HYTCSH---TGDRKCLPGWSGDYCTKAV----QKLSPTKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       109 hy~C~~---~G~c~C~~GwtG~~C~~~i----C~~~c~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      +++|..   .+.|.|++||+|..|+..+    |......|++ .|.   ..|+|.|++||+|.
T Consensus        25 ~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~-~C~n~~g~y~C~C~~G~~~~   86 (114)
T 1aut_L           25 HGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRCSCAPGYKLG   86 (114)
T ss_dssp             SEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS-EEEECSSSEEEECCTTEEEC
T ss_pred             cCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC-EeECCCCCEEeECCCCeeEC
Confidence            345543   2466899999999887653    2211111221 454   34889999999865

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.86  E-value=8.4e-06  Score=60.14  Aligned_cols=48  Identities=15%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             CCccCCCCCCCCCCCccc------------cCCCCCCCCC-CccC----------CCCceeCCCCCccCCCC
Q psy10880        116 GDRKCLPGWSGDYCTKAV------------QKLSPTKALP-NRTS----------RTLFCVLEPSMQLYGNC  164 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~i------------C~~~c~~c~n-G~C~----------~~~~C~C~~G~~G~~~~  164 (166)
                      ..|+|++||+|..|+..+            -.+...+|.+ +.|.          ..|+|.|++||+|. .|
T Consensus        23 ~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~-~C   93 (143)
T 4d90_A           23 FSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI-HC   93 (143)
T ss_dssp             CEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEEST-TS
T ss_pred             EEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCcCC-Cc
Confidence            356999999999997622            1122344554 5776          25899999999987 44

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.76  E-value=1.2e-05  Score=64.95  Aligned_cols=51  Identities=16%  Similarity=0.191  Sum_probs=36.6

Q ss_pred             CCCcccCCCCCCccCCCCCCCCCCCccc-----------cCCC--CCCCCC-CccCCCCceeCCCCC
Q psy10880        106 SFGHYTCSHTGDRKCLPGWSGDYCTKAV-----------QKLS--PTKALP-NRTSRTLFCVLEPSM  158 (166)
Q Consensus       106 ~~ghy~C~~~G~c~C~~GwtG~~C~~~i-----------C~~~--c~~c~n-G~C~~~~~C~C~~G~  158 (166)
                      ..+|++|. .|.|+|.+||+|.+|+.+.           |...  ..+|++ |.|. .++|.|++||
T Consensus        98 Csg~G~C~-~g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~-~g~C~C~~gw  162 (217)
T 2p28_B           98 CHGKGFLE-CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-CGQCLCHTSD  162 (217)
T ss_dssp             TTTSEEEE-TTEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEE-TTEEEECCCC
T ss_pred             cCCCceEE-CCEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEe-CCceECCCCC
Confidence            34678885 4999999999999998553           3321  233443 5665 5899999996

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.75  E-value=9e-06  Score=55.52  Aligned_cols=47  Identities=13%  Similarity=0.147  Sum_probs=33.7

Q ss_pred             CCccCCCCCC--CCCCCc-cccCCCCCCCCCCccC---CCCceeCCCCCccCCC
Q psy10880        116 GDRKCLPGWS--GDYCTK-AVQKLSPTKALPNRTS---RTLFCVLEPSMQLYGN  163 (166)
Q Consensus       116 G~c~C~~Gwt--G~~C~~-~iC~~~c~~c~nG~C~---~~~~C~C~~G~~G~~~  163 (166)
                      ..|.|++||+  |..|.. ..|.. ..+|.++.|.   ..|+|.|++||+|.+.
T Consensus        26 y~C~C~~Gy~~~g~~C~dideC~~-~~~C~~~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A           26 YRCECPFGYILAGNECVDTDECSV-GNPCGNGTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             CCEECCTTEEEETTEEEECCGGGT-CCTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred             EEEECCCCeECCCCccCCcccccC-CCCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence            3559999997  888942 22442 3455667776   3589999999999864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=97.70  E-value=1.3e-05  Score=59.45  Aligned_cols=62  Identities=21%  Similarity=0.436  Sum_probs=42.6

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCccCCCCCCC---------CCCC-ccccCCCC-CCCCC-CccC---CCCceeCCCCC
Q psy10880         94 NGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSG---------DYCT-KAVQKLSP-TKALP-NRTS---RTLFCVLEPSM  158 (166)
Q Consensus        94 ~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG---------~~C~-~~iC~~~c-~~c~n-G~C~---~~~~C~C~~G~  158 (166)
                      ..|...|..      +.+|...+.|+|++||+|         ..|. +..|.... .+|.+ +.|.   ..|+|.|++||
T Consensus         3 ~~C~~~C~~------~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy   76 (143)
T 2bou_A            3 RGCARWCPQ------DSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY   76 (143)
T ss_dssp             CCCCTTCCT------TEEESSSSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTE
T ss_pred             CCCcCcCCC------CCEEcCCCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCc
Confidence            456666764      567877788899999998         5783 23355431 24554 5776   35899999999


Q ss_pred             ccC
Q psy10880        159 QLY  161 (166)
Q Consensus       159 ~G~  161 (166)
                      +|.
T Consensus        77 ~g~   79 (143)
T 2bou_A           77 EPV   79 (143)
T ss_dssp             EET
T ss_pred             ccC
Confidence            986

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.63  E-value=9.8e-06  Score=71.71  Aligned_cols=48  Identities=25%  Similarity=0.587  Sum_probs=16.2

Q ss_pred             EEEecCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCcc
Q psy10880         83 YRVTCDPHYYGNGCAT-LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA  132 (166)
Q Consensus        83 ~r~~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~  132 (166)
                      ++|.|.++|.|..|+. .|.+  .+..+++|...+.|.|.+||+|.+|+..
T Consensus       408 ~~C~C~~G~~G~~C~~~~C~~--~C~~~g~C~~~~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          408 GKCCCSPGWEGDFCRTAKCEP--ACRHGGVCVRPNKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             SCEEECTTEESTTSCEECC--------------------------------
T ss_pred             CeECCCCCcCCCcCCcCcCCC--CCCCCCEECCCCEEECCCCcccCCCCCC
Confidence            5899999999999986 7876  3445789988899999999999999874

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.60  E-value=2.6e-05  Score=58.35  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             CccCCCCCCCCCCCccccCCCCCCCCCC----ccC---C-CCceeCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKAVQKLSPTKALPN----RTS---R-TLFCVLEPSMQL  160 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC~~~c~~c~nG----~C~---~-~~~C~C~~G~~G  160 (166)
                      .|+|++||+|..|+..+-.+..+++.++    .|.   . .|+|.|++||++
T Consensus        69 ~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l  120 (142)
T 2c4f_L           69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL  120 (142)
T ss_dssp             EEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEE
T ss_pred             EeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceE
Confidence            4489999999999864423222333333    343   3 689999999993

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.57  E-value=4.6e-05  Score=67.32  Aligned_cols=80  Identities=9%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             eceeEEEecCCCCCCCCCCCCCCCCCC--CCCcccC-----CCCCCcc-CCCCCCCCCCCccccCCCCCCCCC-CccCCC
Q psy10880         79 MLYEYRVTCDPHYYGNGCATLCRPRDD--SFGHYTC-----SHTGDRK-CLPGWSGDYCTKAVQKLSPTKALP-NRTSRT  149 (166)
Q Consensus        79 l~~~~r~~C~~gyyG~~C~~~C~p~~~--~~ghy~C-----~~~G~c~-C~~GwtG~~C~~~iC~~~c~~c~n-G~C~~~  149 (166)
                      ....++|.|..++.|+.|++ |.|.-.  ...++++     ...+.|+ |.-++.|..|+...     .+|+| |.|...
T Consensus       309 ~~g~~~C~C~~~ttG~~CE~-C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t-----~~C~ngg~C~~~  382 (426)
T 3zyj_B          309 DNSKLTCECEHNTTGPDCGK-CKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL-----LHCQNGGTCHNN  382 (426)
T ss_dssp             ETTEEEECCCTTEESSSSCE-ECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC----------------------------
T ss_pred             CCCCceeeCCCCCcCCCccc-cccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCc-----ccCCCCCCcCCC
Confidence            33457899999999999985 544210  0111121     1123443 44445566775533     24444 456654


Q ss_pred             CceeCCCCCccCCCCC
Q psy10880        150 LFCVLEPSMQLYGNCA  165 (166)
Q Consensus       150 ~~C~C~~G~~G~~~~~  165 (166)
                      .+|.|++||+|. +|+
T Consensus       383 ~~C~C~~G~~G~-~Ce  397 (426)
T 3zyj_B          383 VRCLCPAAYTGI-LCE  397 (426)
T ss_dssp             ----------------
T ss_pred             CCCcCCCCCcCC-CCc
Confidence            588888888886 453

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.56  E-value=2.8e-05  Score=50.18  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=28.4

Q ss_pred             CCCCCccccCCCCCCCCC-CccC--------CCCceeCCCCCccCCCCC
Q psy10880        126 GDYCTKAVQKLSPTKALP-NRTS--------RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       126 G~~C~~~iC~~~c~~c~n-G~C~--------~~~~C~C~~G~~G~~~~~  165 (166)
                      |+.|.+.+-.+...||+| |.|.        ..|+|.|++||+|. .|+
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~-~CE   48 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD-RCQ   48 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEEST-TSC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC-CcC
Confidence            677888876666777776 5772        35899999999998 665

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.56  E-value=8.8e-05  Score=61.34  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             CCccCCCCCCCCCCCccccCCCC---CCCCCCccC---CCCceeCCCCCccC
Q psy10880        116 GDRKCLPGWSGDYCTKAVQKLSP---TKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~iC~~~c---~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      ..|.|++||+|.+|+..+-.+..   .+|.+ .|.   ..|+|.|++||+|.
T Consensus        26 ~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~-~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B           26 YTCTCSPGYEGSNCELAKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             CCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS-EEECCSSSCEEECCTTEECC
T ss_pred             eEEECCCCCcCCccccCcccCCCCCCCCCcC-ccccCCCeeEEecccccccc
Confidence            34589999999999755533322   55655 665   35899999999874

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.56  E-value=5.1e-05  Score=57.26  Aligned_cols=61  Identities=15%  Similarity=0.367  Sum_probs=38.2

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC--CCCCCCCCCCcccC-CC---CCCccCCCCCC----CCCCCc
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT--LCRPRDDSFGHYTC-SH---TGDRKCLPGWS----GDYCTK  131 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~--~C~p~~~~~ghy~C-~~---~G~c~C~~Gwt----G~~C~~  131 (166)
                      ..+.+..+.+..+|+|.|++||.|..|..  .|........+ +| ..   ...|.|++||+    |..|..
T Consensus        56 C~n~g~C~~~~~~y~C~C~~G~~G~~C~~~deC~~~~~~C~~-~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L           56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQ-FCKTGADSKVLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             SCTTCEEEECSSCEEEECCSSEESTTTCEECCTTSGGGSCSS-BCCCCSSSCCCCBCCTTEEECTTSSSEEE
T ss_pred             CCCCCEeECCCCCEEEecCCCCcCCcCCCCccccCCCCCCcC-CCCCCCCCCEEeEcCCCcEeCCCCCcCCC
Confidence            34445666667778888888888888865  46542111122 56 32   34678888887    777754

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.48  E-value=1.4e-05  Score=63.71  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             CccCCCCCCCCCCCccc---cCCCCCCCCCCccC---CCCceeCCCCCc
Q psy10880        117 DRKCLPGWSGDYCTKAV---QKLSPTKALPNRTS---RTLFCVLEPSMQ  159 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~i---C~~~c~~c~nG~C~---~~~~C~C~~G~~  159 (166)
                      .|.|++||+|.+|...+   |.....+|.+ .|.   ..|+|.|++||+
T Consensus        64 ~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~-~C~n~~gsy~C~C~~Gy~  111 (195)
T 1nfu_B           64 TCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYT  111 (195)
T ss_dssp             -----------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEE
T ss_pred             eEeCCCCceeccccccccccccCCCCCCCC-EeECCCCCeEEECCCCce
Confidence            45999999999998754   6654445554 665   348999999999

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=97.47  E-value=1.4e-06  Score=72.72  Aligned_cols=86  Identities=6%  Similarity=-0.187  Sum_probs=55.6

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCcc
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRT  146 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C  146 (166)
                      ....+..+....+|+|.|+++|.|..|+.   .|....... ...|.     .+..++.|.+|++.++.....+.++|.|
T Consensus       107 C~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~-s~pC~-----ngg~c~~G~~c~~~i~c~~~~c~ngg~C  180 (267)
T 4fbr_A          107 SNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGS-AAPWH-----SGGVWVLGTRGKQNVINVDAKSNDGGKT  180 (267)
T ss_dssp             CSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSST-TSCCE-----EEEEEECCSSTTSCEEEEEEECSSTTSE
T ss_pred             CCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcC-Ccccc-----CCcceecccccccccccCCCCCCCCCEe
Confidence            34457778888999999999999999986   243221100 11121     2223355888888775444334445677


Q ss_pred             C---CCCceeCCCCCccC
Q psy10880        147 S---RTLFCVLEPSMQLY  161 (166)
Q Consensus       147 ~---~~~~C~C~~G~~G~  161 (166)
                      .   ..|+|.||+||+|.
T Consensus       181 ~dg~~~y~C~Cp~Gf~G~  198 (267)
T 4fbr_A          181 LSGTMTYNGEGPIGFRGT  198 (267)
T ss_dssp             EEEEEEETTSCCEEEEEE
T ss_pred             eCCCCCeEEeCCCCcccc
Confidence            5   35999999999885

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.42  E-value=1.8e-05  Score=58.72  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             CccCCCCCCCCCCCccc---cCCCCCCCCCCccC---CCCceeCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKAV---QKLSPTKALPNRTS---RTLFCVLEPSMQL  160 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~i---C~~~c~~c~nG~C~---~~~~C~C~~G~~G  160 (166)
                      .|.|++||+|..|...+   |.....+|++ .|.   ..|+|.|++||++
T Consensus        64 ~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~-~C~~~~g~y~C~C~~Gy~l  112 (134)
T 2vh0_B           64 TCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTL  112 (134)
T ss_dssp             -----------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEE
T ss_pred             EeeCCCCccCCccccCCCCccccCCCCCCC-EeECCCCCEEEECCCCcEE
Confidence            45999999999998754   6554444544 565   3489999999993

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.37  E-value=3.7e-05  Score=52.70  Aligned_cols=46  Identities=22%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             ccCCCCCC-----CCCCCc-cccCCCCCCCCCCccCC---CCceeCCCCCccCCC
Q psy10880        118 RKCLPGWS-----GDYCTK-AVQKLSPTKALPNRTSR---TLFCVLEPSMQLYGN  163 (166)
Q Consensus       118 c~C~~Gwt-----G~~C~~-~iC~~~c~~c~nG~C~~---~~~C~C~~G~~G~~~  163 (166)
                      |.|++||+     |..|.. .-|...+..|+++.|.+   .|+|.|++||+|...
T Consensus        27 C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~   81 (86)
T 1lmj_A           27 CKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPN   81 (86)
T ss_dssp             ECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSS
T ss_pred             eeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCC
Confidence            37888887     667742 12544444555677763   489999999998743

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.35  E-value=7e-05  Score=56.50  Aligned_cols=43  Identities=14%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             CccCCCCCCCCCCCcc-ccCCCCCCCCCCcc-C---CCCceeCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA-VQKLSPTKALPNRT-S---RTLFCVLEPSMQL  160 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~-iC~~~c~~c~nG~C-~---~~~~C~C~~G~~G  160 (166)
                      .|.|++||+|..|+.. .|.....+|.+ .| .   ..|+|.|++||++
T Consensus        70 ~C~C~~G~~G~~C~~~deC~~~~~~C~~-~C~~n~~g~y~C~C~~Gy~l  117 (146)
T 1x7a_L           70 ECWCQVGFEGKNCELDATCNIKNGRCKQ-FCKTGADSKVLCSCTTGYRL  117 (146)
T ss_dssp             EEECCSSEESTTTCEECCTTSGGGSCSS-BCCCCSSSCCCCBCCTTEEE
T ss_pred             EEecCCCCcCCcCCCCccccCCCCCCcC-CCCCCCCCCEEeEcCCCcEe
Confidence            5699999999999764 24433334444 67 4   3599999999994

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=97.33  E-value=0.00016  Score=57.45  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             CCcccCCCCCCccCCCCCCCCCCCccc
Q psy10880        107 FGHYTCSHTGDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       107 ~ghy~C~~~G~c~C~~GwtG~~C~~~i  133 (166)
                      .++++|..++.|.|++||+|.+|++..
T Consensus       156 ~ngG~Cv~P~~C~C~~Gw~G~~C~~~~  182 (188)
T 2ygo_A          156 RNGGFCNERRICECPDGFHGPHCEGTK  182 (188)
T ss_dssp             CTTCEECTTSCEECCTTCBTTTTCBC-
T ss_pred             CCCCEeCCCCcccCcCCCCCCCCcCCc
Confidence            447889889999999999999998753

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.31  E-value=4.1e-05  Score=55.04  Aligned_cols=73  Identities=19%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             ecCCCCCCCCCCC-CCCCCCCCCCcccCCC---CCCccCCCCCCC---CCCCccc--cCCCCCCCCCCccCC---CCcee
Q psy10880         86 TCDPHYYGNGCAT-LCRPRDDSFGHYTCSH---TGDRKCLPGWSG---DYCTKAV--QKLSPTKALPNRTSR---TLFCV  153 (166)
Q Consensus        86 ~C~~gyyG~~C~~-~C~p~~~~~ghy~C~~---~G~c~C~~GwtG---~~C~~~i--C~~~c~~c~nG~C~~---~~~C~  153 (166)
                      ....+|.|..|.. .|....... ..+|..   ...|.|++||+|   ..|. .|  |.. ..+|. +.|.+   .|+|.
T Consensus        17 ~~~~~~~~~~Cd~neC~~~~~~C-~~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~-~~~C~-~~C~n~~gsy~C~   92 (107)
T 2w2n_E           17 TTENLYFQGAMGTNECLDNNGGC-SYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD-PDTCS-QLCVNLEGGYKCQ   92 (107)
T ss_dssp             ---CCCCSCCBSCCGGGTGGGGC-SSEEECCSBSCEEECCTTCEEETTTEEE-C--------------------------
T ss_pred             ccCCCcCCCCCcCccCcCCCCCC-CCEeEeCCCCeEEECCCCccccCCCccc-cccccCC-CCCcC-CeeecCCCCEEEE
Confidence            3456677777755 565421000 124432   246699999998   7786 34  431 23444 56653   59999


Q ss_pred             CCCCCccCC
Q psy10880        154 LEPSMQLYG  162 (166)
Q Consensus       154 C~~G~~G~~  162 (166)
                      |++||+|..
T Consensus        93 C~~Gy~~~~  101 (107)
T 2w2n_E           93 CEEGFQLDP  101 (107)
T ss_dssp             ---------
T ss_pred             CCCCceECC
Confidence            999999864

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=97.29  E-value=0.00014  Score=50.58  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             eeceeEEEecCCCCCCCCCC-C---CCCCCCCCCCcccCCC-----CCCccCCCCCCCCCCCccc
Q psy10880         78 SMLYEYRVTCDPHYYGNGCA-T---LCRPRDDSFGHYTCSH-----TGDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus        78 ~l~~~~r~~C~~gyyG~~C~-~---~C~p~~~~~ghy~C~~-----~G~c~C~~GwtG~~C~~~i  133 (166)
                      .....|+|.|.++|.  .|+ .   .|.+.. ...+++|..     ...|+|++||+|.+|++.+
T Consensus        27 n~~~~y~C~C~~G~~--~C~~~~~~~C~~~p-C~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~i   88 (91)
T 1tpg_A           27 RSNRVEYCWCNSGRA--QCHSVPVKSCSEPR-CFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   88 (91)
T ss_dssp             SSSCEEEEECSSSCC--BCCEECEEECSSCC-SCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             cCCCCcEeECCCCCc--ccccCcCCcccCCC-CCCCCEeecCCCCCCeEeECCCCCcCCcCCcCC
Confidence            335689999999997  886 1   476543 223456752     3468999999999998765

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=97.25  E-value=4.4e-05  Score=71.28  Aligned_cols=47  Identities=21%  Similarity=0.403  Sum_probs=40.2

Q ss_pred             ecCCCCCCCCCCC--CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccC
Q psy10880         86 TCDPHYYGNGCAT--LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQK  135 (166)
Q Consensus        86 ~C~~gyyG~~C~~--~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~  135 (166)
                      .|.++|.|..|..  .|..  .+.||++| ..|.|+|.+||+|..|..+.|.
T Consensus       521 ~C~~gw~g~dc~i~~~Cp~--~C~ghG~C-~~G~C~Cd~G~~G~~C~~~~~~  569 (725)
T 2e26_A          521 DKQQTWAIDNVYIGDGCLD--MCSGHGRC-VQGSCVCDEQWGGLYCDEPETS  569 (725)
T ss_dssp             CTTCCEEEEEEEEESCSSG--GGGGSEEE-ETTEEEECTTEESTTSCEESSC
T ss_pred             ccCCCcccccccccCCCCc--ccCCCcEE-CCCCEeeCCCccCCCcCccCCC
Confidence            6999999999993  5764  67789999 5699999999999999987654

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=97.22  E-value=4.7e-06  Score=69.58  Aligned_cols=86  Identities=8%  Similarity=-0.102  Sum_probs=55.1

Q ss_pred             cccceeeeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCccccCCCCCCCCC-CccC
Q psy10880         72 HKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALP-NRTS  147 (166)
Q Consensus        72 ~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~n-G~C~  147 (166)
                      ..|+.+....+|.|.|+.+|.|..|+.   .|...... ....|...|.+     |+|..|+..+ .+...+|++ |.|.
T Consensus        42 ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c-~s~pC~nggtc-----~~G~~c~~~~-eC~s~pC~ngG~C~  114 (267)
T 4fbr_A           42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGG-TSAPWQPGGVW-----VLGARDKQNI-VAVSIKSNDGGKTL  114 (267)
T ss_dssp             STTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSS-TTSCEEEEEEE-----ECCCCSSCCE-EEEEEECSSTTSEE
T ss_pred             CCCeecCCCCCeEEeCCCCcccccccccccccccccCc-CCCcccCCCee-----eccCcccccc-ccCCCCCCCCCEEe
Confidence            456778888999999999999999976   22211000 01123222222     5788888765 333345555 5675


Q ss_pred             ---CCCceeCCCCCccCCCCC
Q psy10880        148 ---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       148 ---~~~~C~C~~G~~G~~~~~  165 (166)
                         ..|+|.|++||+|. +|+
T Consensus       115 ~~~~sy~C~C~~Gf~G~-~Ce  134 (267)
T 4fbr_A          115 TGTTTYNGEGPIGFKSE-VTD  134 (267)
T ss_dssp             EEEEEETTSCCEEEEEE-ECC
T ss_pred             cCCccEEeeCCCCcccc-CCC
Confidence               35999999999996 554

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.17  E-value=0.00018  Score=55.04  Aligned_cols=21  Identities=43%  Similarity=0.911  Sum_probs=18.7

Q ss_pred             cCCC-CCCccCCCCCCCCCCCc
Q psy10880        111 TCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus       111 ~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      +|++ +|+|+|.+||+|..|++
T Consensus       125 ~Cd~~tG~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A          125 SCNPVTGQCQCLPHVSGRDCGT  146 (162)
T ss_dssp             CCCTTTCCCCBCTTEESTTCCE
T ss_pred             CCCCCCCEeECCCCCcCCCCCC
Confidence            7886 79999999999999974

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.15  E-value=0.00027  Score=52.70  Aligned_cols=64  Identities=25%  Similarity=0.370  Sum_probs=44.3

Q ss_pred             ccccccceeeeceeEEEecCCCCCCCCCCC---CCCCCCCCCCcc---cCCC----CCCccCCCCCC----CCCCCccc
Q psy10880         69 EDEHKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPRDDSFGHY---TCSH----TGDRKCLPGWS----GDYCTKAV  133 (166)
Q Consensus        69 ~~~~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~~~~~ghy---~C~~----~G~c~C~~Gwt----G~~C~~~i  133 (166)
                      +..+.+..+.+..+|+|.|.+||.|..|..   .|.+.. ...+.   +|..    ...|.|++||+    |..|...+
T Consensus        54 pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~-~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~  131 (142)
T 2c4f_L           54 PCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICV-NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV  131 (142)
T ss_dssp             CCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTT-TGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESS
T ss_pred             CcCCCCEEeCCCCCEEeeCCCCccCCccccCcccccccc-CCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCC
Confidence            355667788888899999999999999985   232111 00111   5643    24689999999    88997543

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=97.07  E-value=0.00034  Score=64.51  Aligned_cols=83  Identities=18%  Similarity=0.325  Sum_probs=51.8

Q ss_pred             ceeeeceeEEEe-cCCCCCCCCCC-----------------CCCCCC-CCCCCcccCCC-------CCCccCCCCCCC--
Q psy10880         75 AHSSMLYEYRVT-CDPHYYGNGCA-----------------TLCRPR-DDSFGHYTCSH-------TGDRKCLPGWSG--  126 (166)
Q Consensus        75 ~~~~l~~~~r~~-C~~gyyG~~C~-----------------~~C~p~-~~~~ghy~C~~-------~G~c~C~~GwtG--  126 (166)
                      .++.+..+|+|. |+++|.|..|.                 ..|... ..+..+.+|..       ..+|+|++||+|  
T Consensus        62 ~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG  141 (634)
T 1yo8_A           62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDG  141 (634)
T ss_dssp             CEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESS
T ss_pred             ceeeccCceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccC
Confidence            677888899999 99999999865                 145532 12223456642       237899999998  


Q ss_pred             CCCCccccCCCCCCCCCCccC--CCCcee---CCCCC
Q psy10880        127 DYCTKAVQKLSPTKALPNRTS--RTLFCV---LEPSM  158 (166)
Q Consensus       127 ~~C~~~iC~~~c~~c~nG~C~--~~~~C~---C~~G~  158 (166)
                      ..|++.+..-.| +..++.|.  ..|+|.   |+.++
T Consensus       142 ~~Ce~d~DiDeC-~~~~~~C~~~~~y~C~~dnC~~~p  177 (634)
T 1yo8_A          142 LICGEDSDLDGW-PNLNLVCATNATYHCIKDNCPHLP  177 (634)
T ss_dssp             SSEEECTTSSSS-CSSCCTTTTTCSSSCSCCSSTTSC
T ss_pred             cccccccCcccc-cCCCCcccCCCCcccccccccccc
Confidence            789753311111 12233444  357776   88765

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.05  E-value=3.7e-05  Score=61.23  Aligned_cols=63  Identities=22%  Similarity=0.474  Sum_probs=20.8

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC----CCCCCCCCCCcccCCC---CCCccCCCCCC----CCCCCccc
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT----LCRPRDDSFGHYTCSH---TGDRKCLPGWS----GDYCTKAV  133 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~----~C~p~~~~~ghy~C~~---~G~c~C~~Gwt----G~~C~~~i  133 (166)
                      ..+.|.++....+|+|.|++||.|..|..    .|........+ +|..   .+.|.|.+||+    |..|...+
T Consensus        50 C~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~-~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             -------------------------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC-EeECCCCCeEEECCCCceeCCCCCccccCC
Confidence            44556788888899999999999999975    27653211122 5643   24679999999    99997643

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.03  E-value=0.00011  Score=52.85  Aligned_cols=57  Identities=16%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             ccccceeeeceeEEEecCCCCCCCCCCCC-----CCCCCCCCCcccCCC---CCCccCCCCCCCCC
Q psy10880         71 EHKSAHSSMLYEYRVTCDPHYYGNGCATL-----CRPRDDSFGHYTCSH---TGDRKCLPGWSGDY  128 (166)
Q Consensus        71 ~~~~~~~~l~~~~r~~C~~gyyG~~C~~~-----C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~  128 (166)
                      .+.+..+....+|+|.|.+||.|..|+..     |........+ +|..   ...|+|.+||+|..
T Consensus        23 ~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~-~C~n~~g~y~C~C~~G~~~~~   87 (114)
T 1aut_L           23 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRCSCAPGYKLGD   87 (114)
T ss_dssp             TTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS-EEEECSSSEEEECCTTEEECT
T ss_pred             CCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC-EeECCCCCEEeECCCCeeECC
Confidence            34566777778999999999999999862     6532111111 5542   24679999999543

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.96  E-value=4.6e-05  Score=56.50  Aligned_cols=62  Identities=21%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC-C---CCCCCCCCCcccCCC---CCCccCCCCCC----CCCCCcc
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT-L---CRPRDDSFGHYTCSH---TGDRKCLPGWS----GDYCTKA  132 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~-~---C~p~~~~~ghy~C~~---~G~c~C~~Gwt----G~~C~~~  132 (166)
                      ..+.+..+.+...|+|.|++||.|..|.. +   |........+ +|..   ...|.|.+||+    |..|...
T Consensus        50 C~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~-~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIPT  122 (134)
T ss_dssp             -------------------------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             CCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCC-EeECCCCCEEEECCCCcEECCCCCccCcC
Confidence            34556677777899999999999999976 3   7643211112 5643   23679999999    8999653

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.93  E-value=0.00049  Score=54.71  Aligned_cols=37  Identities=11%  Similarity=0.034  Sum_probs=28.1

Q ss_pred             CCCCCccccCCCCCCCCCCccCCCCceeCCCCCccCCCCC
Q psy10880        126 GDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       126 G~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      ...|.+++|...|  -|+|.|+.+.+|.|++||+|. -|+
T Consensus       143 ~K~C~~~~C~~~C--~ngG~Cv~P~~C~C~~Gw~G~-~C~  179 (188)
T 2ygo_A          143 FKTCQQAECPGGC--RNGGFCNERRICECPDGFHGP-HCE  179 (188)
T ss_dssp             EEEECCCCCTTCC--CTTCEECTTSCEECCTTCBTT-TTC
T ss_pred             cccccCCccCCCC--CCCCEeCCCCcccCcCCCCCC-CCc
Confidence            3467788887432  245799999999999999997 553

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.85  E-value=6.5e-05  Score=47.35  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=25.0

Q ss_pred             CccCCCCCCCCCCCccccCCCCCCCCC-CccCC-------CCceeCCCCCccCCCCC
Q psy10880        117 DRKCLPGWSGDYCTKAVQKLSPTKALP-NRTSR-------TLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC~~~c~~c~n-G~C~~-------~~~C~C~~G~~G~~~~~  165 (166)
                      .|+|++||+            ..+|+| |.|..       .|+|.|++||+|. .|+
T Consensus         4 ~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~-~Ce   47 (52)
T 3ca7_A            4 TYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ-RCE   47 (52)
T ss_dssp             CBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEEST-TSC
T ss_pred             eeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCC-CCc
Confidence            358888887            123444 56752       3799999999997 664

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.49  E-value=0.00071  Score=46.31  Aligned_cols=40  Identities=10%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             CccCCCCCC----CCCCCccc--cCCCCCCCCCCccC---CCCceeCCCCCccC
Q psy10880        117 DRKCLPGWS----GDYCTKAV--QKLSPTKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       117 ~c~C~~Gwt----G~~C~~~i--C~~~c~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      .|+|++||+    |..|. .+  |..  .+|+ +.|.   ..|+|.|+ ||.|.
T Consensus        26 ~C~C~~G~~~~~~g~~C~-dideC~~--~~C~-~~C~n~~g~y~C~C~-g~~G~   74 (87)
T 1z6c_A           26 ECECPEGYRYNLKSKSCE-DIDECSE--NMCA-QLCVNYPGGYTCYCD-GKKGF   74 (87)
T ss_dssp             CCSSSTTCEEETTTTEEE-CCCHHHH--SCCS-SEECCCSSSCCEECC-SSSCC
T ss_pred             EEECCCCceECCCCCcCC-CcCeeCC--CCCC-CEEEccCCCEEEECC-CCcCC
Confidence            348999998    78884 33  432  3444 5665   35999996 44443

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=96.24  E-value=0.0014  Score=42.09  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=15.5

Q ss_pred             CCccCCCCCCCCCCCccc
Q psy10880        116 GDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~i  133 (166)
                      ..|.|++||+|.+|+..|
T Consensus        34 y~C~C~~g~~G~~CE~~v   51 (55)
T 3u7u_G           34 YLCKCPNEFTGDRCQNYV   51 (55)
T ss_dssp             EEEEECTTEESTTSCEEC
T ss_pred             EeEeCCCCCcCCCcCccC
Confidence            466999999999999876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.19  E-value=0.0012  Score=56.00  Aligned_cols=40  Identities=18%  Similarity=0.406  Sum_probs=13.0

Q ss_pred             ccCCCCCC----CCCCCccccCC-CCCCCCCCccCC---CCceeCCCCCc
Q psy10880        118 RKCLPGWS----GDYCTKAVQKL-SPTKALPNRTSR---TLFCVLEPSMQ  159 (166)
Q Consensus       118 c~C~~Gwt----G~~C~~~iC~~-~c~~c~nG~C~~---~~~C~C~~G~~  159 (166)
                      |.|.+||+    |..| +.+-.+ ...+|.++ |.+   .|+|.|++||.
T Consensus        26 C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~-C~~~~g~~~C~C~~g~~   73 (386)
T 3v65_B           26 CTCHTGYRLTEDGRTC-QDVNECAEEGYCSQG-CTNSEGAFQCWCEAGYE   73 (386)
T ss_dssp             ---------------------------CCTTE-EC-----CCEECCTTEE
T ss_pred             eECCCCceECCCCCcc-CccceeCCcCcccCc-CCCCCCCCeEEECCCce
Confidence            39999998    8899 444222 23455544 653   49999999998

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.16  E-value=0.0011  Score=59.01  Aligned_cols=51  Identities=29%  Similarity=0.554  Sum_probs=15.1

Q ss_pred             eeEEEecCCCCCCCCCCC-------------CCCCCCCC---CCcccCCC-CCCccCCCCCCCCCCCc
Q psy10880         81 YEYRVTCDPHYYGNGCAT-------------LCRPRDDS---FGHYTCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus        81 ~~~r~~C~~gyyG~~C~~-------------~C~p~~~~---~ghy~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      ..++|.|.++|.|..|++             .|.+..-.   .-+.+|+. .|+|+|.+||+|..|++
T Consensus       458 ~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          458 ETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             TTCCBCBCTTCCSTTTCC--------------------------------------------------
T ss_pred             CCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            456799999999999963             13322111   11234654 58999999999999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.03  E-value=0.0029  Score=53.89  Aligned_cols=13  Identities=31%  Similarity=0.337  Sum_probs=8.1

Q ss_pred             CCceeCCCCCccC
Q psy10880        149 TLFCVLEPSMQLY  161 (166)
Q Consensus       149 ~~~C~C~~G~~G~  161 (166)
                      .|+|.|++||++.
T Consensus        59 ~~~C~C~~g~~~~   71 (400)
T 3p5b_L           59 GYKCQCEEGFQLD   71 (400)
T ss_dssp             SCBCCCCTTCCCC
T ss_pred             ceeeecccccccc
Confidence            3666666666654

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=96.00  E-value=0.0014  Score=47.29  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=30.5

Q ss_pred             CcccCCCCCCccCCCCCCCCCCCccccCCC--CCCCCCCccC--CCCceeCCCCCccC
Q psy10880        108 GHYTCSHTGDRKCLPGWSGDYCTKAVQKLS--PTKALPNRTS--RTLFCVLEPSMQLY  161 (166)
Q Consensus       108 ghy~C~~~G~c~C~~GwtG~~C~~~iC~~~--c~~c~nG~C~--~~~~C~C~~G~~G~  161 (166)
                      +.|+|      +|++||+|..+....|...  ..+|. +.|.  ..|+|.|++||++.
T Consensus        22 g~y~C------~C~~Gy~g~~~~~~~C~~~C~~~~C~-~~C~~~~~y~C~C~~Gy~~~   72 (118)
T 1dx5_I           22 TSYLC------VCAEGFAPIPHEPHRCQMFCNQTACP-ADCDPNTQASCECPEGYILD   72 (118)
T ss_dssp             SCEEE------ECCTTEEEETTEEEEEEECCCSSEEE-CEECTTSTTCEECCTTEEEE
T ss_pred             CCEEe------ECCCCccccCCCCCccccccCCCCCC-CcccCCCCeEeECCCCccCC
Confidence            45666      9999999986654444321  11111 3444  35999999999954

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=95.94  E-value=0.0049  Score=50.70  Aligned_cols=58  Identities=26%  Similarity=0.573  Sum_probs=41.7

Q ss_pred             cccccceeeeceeEEEecCCCCCCCCCCC---CCCCC-CCCCCcccCCC---CCCccCCCCCCCCC
Q psy10880         70 DEHKSAHSSMLYEYRVTCDPHYYGNGCAT---LCRPR-DDSFGHYTCSH---TGDRKCLPGWSGDY  128 (166)
Q Consensus        70 ~~~~~~~~~l~~~~r~~C~~gyyG~~C~~---~C~p~-~~~~ghy~C~~---~G~c~C~~GwtG~~  128 (166)
                      ..+.+.++.....|+|.|.+||.|..|+.   .|.+. .....| +|..   ...|.|.+||+|..
T Consensus        13 C~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~-~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B           13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             CTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS-EEECCSSSCEEECCTTEECCT
T ss_pred             CCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC-ccccCCCeeEEeccccccccc
Confidence            45567777777889999999999999983   58652 111223 6653   35789999999853

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=95.92  E-value=0.0031  Score=38.73  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=16.7

Q ss_pred             CCCCCCccC-----CCCceeCCCCCccCCCCC
Q psy10880        139 TKALPNRTS-----RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~nG~C~-----~~~~C~C~~G~~G~~~~~  165 (166)
                      .+|.||.|.     ..|.|.|++||+|. .|+
T Consensus        12 ~pC~nG~C~~~~~~~~~~C~C~~GytG~-~Ce   42 (46)
T 1k36_A           12 GYCLHGQCIYLVDMSQNYCRCEVGYTGV-RCE   42 (46)
T ss_dssp             SSCSSEEEEEETTTTEEEEEECTTCSST-TSC
T ss_pred             CCCCCCEeeccCCCCCEEEECCCCCccC-CCC
Confidence            445556664     13678888888876 554

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=95.81  E-value=0.0057  Score=35.52  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=17.8

Q ss_pred             CCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        139 TKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      .+|+| |.|.   ..|+|.|++||+|. .|+
T Consensus         9 ~pC~ngg~C~~~~~~~~C~C~~G~~G~-~Ce   38 (39)
T 1edm_B            9 NPCLNGGSCKDDINSYECWCPFGFEGK-NCE   38 (39)
T ss_dssp             CCCCTTCEEEEETTEEEEECCTTCCST-TSC
T ss_pred             CCCCCCCEeEcCCCceEeECCCCCcCC-ccC
Confidence            34554 5675   24789999999887 554

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.81  E-value=0.0011  Score=45.20  Aligned_cols=55  Identities=16%  Similarity=0.290  Sum_probs=35.9

Q ss_pred             cceeeeceeEEEecCCCCC-----CCCCCC--CCCCCCCCCCcccCCC---CCCccCCCCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYY-----GNGCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDY  128 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyy-----G~~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~  128 (166)
                      +..+.+..+|+|.|++||.     |..|..  .|........+.+|..   ...|.|++||+|..
T Consensus        16 g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             SCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCC
Confidence            4677888899999999997     777754  2532211111235542   24679999999853

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.77  E-value=0.0014  Score=44.39  Aligned_cols=54  Identities=24%  Similarity=0.437  Sum_probs=37.3

Q ss_pred             cceeeeceeEEEecCCCCC--CCCCCC--CCCCCCCCCCcccCCC---CCCccCCCCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYY--GNGCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDY  128 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyy--G~~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~  128 (166)
                      +..+.+..+|+|.|++||.  |..|..  .|...... .+.+|..   ...|.|++||+|..
T Consensus        17 g~C~n~~g~y~C~C~~Gy~~~g~~C~dideC~~~~~C-~~~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           17 GQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             SEECCCSSCCCEECCTTEEEETTEEEECCGGGTCCTT-SSSCEEECSSSEEECCSSSSCCCS
T ss_pred             CEEEecCCCEEEECCCCeECCCCccCCcccccCCCCC-CCCEeECCCCCEEeECCCCeEeCC
Confidence            5667777899999999997  888864  46521111 2346653   24679999999864

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=95.61  E-value=0.011  Score=34.27  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=10.7

Q ss_pred             cceeeeceeEEEecCCCCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYYGNGC   96 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyyG~~C   96 (166)
                      +..+....+|+|.|+++|.|..|
T Consensus        15 g~C~~~~~~~~C~C~~G~~G~~C   37 (39)
T 1edm_B           15 GSCKDDINSYECWCPFGFEGKNC   37 (39)
T ss_dssp             CEEEEETTEEEEECCTTCCSTTS
T ss_pred             CEeEcCCCceEeECCCCCcCCcc
Confidence            33444444445555555554444

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=95.30  E-value=0.016  Score=36.19  Aligned_cols=16  Identities=38%  Similarity=0.829  Sum_probs=11.1

Q ss_pred             ccCCCCCCCCCCCccc
Q psy10880        118 RKCLPGWSGDYCTKAV  133 (166)
Q Consensus       118 c~C~~GwtG~~C~~~i  133 (166)
                      |.|++||+|.+|+..+
T Consensus        31 C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A           31 CNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             EECCTTCCSSSSCCCS
T ss_pred             EECCCCCcCCcCCccC
Confidence            3777777777776654

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=95.11  E-value=0.015  Score=48.48  Aligned_cols=52  Identities=15%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             CcccCCCCCCccCCCCCCCCCCCcc-----------ccCCC--CCCCCC-CccCCCCceeCCCCCccC
Q psy10880        108 GHYTCSHTGDRKCLPGWSGDYCTKA-----------VQKLS--PTKALP-NRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus       108 ghy~C~~~G~c~C~~GwtG~~C~~~-----------iC~~~--c~~c~n-G~C~~~~~C~C~~G~~G~  161 (166)
                      ||++| .-|.|+|.+||+|..|+-+           .|...  -..|++ |.| .=++|.|..+|.|.
T Consensus       200 g~G~~-~CG~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C-~CG~C~C~~~~~~~  265 (280)
T 2p26_A          200 GKGFL-ECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC-VCGQCLCHTSDVPG  265 (280)
T ss_dssp             GSEEE-ETTEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEE-ETTEEEECCCSSTT
T ss_pred             CCCeE-CCCceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceE-eCCeeECcCCCCCC
Confidence            45554 2489999999999999732           23210  001221 223 23899998888664

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=94.95  E-value=0.019  Score=35.80  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=18.9

Q ss_pred             CCCC-CccC-----CCCceeCCCCCccCCCCC
Q psy10880        140 KALP-NRTS-----RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       140 ~c~n-G~C~-----~~~~C~C~~G~~G~~~~~  165 (166)
                      +|+| |.|.     ..|+|.|++||+|. .|+
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~-~Ce   43 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGD-RCQ   43 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSS-SSC
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCC-cCC
Confidence            5555 5775     34899999999997 664

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=94.68  E-value=0.016  Score=50.17  Aligned_cols=17  Identities=24%  Similarity=0.669  Sum_probs=9.8

Q ss_pred             eEEEecCCCCCCCCCCC
Q psy10880         82 EYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~   98 (166)
                      .+.|.|.++|.|..|++
T Consensus       271 ~~~C~C~~nt~G~~Ce~  287 (375)
T 4aqt_A          271 KLMCNCKHNTYGVDCEK  287 (375)
T ss_dssp             CEEECCCTTEESTTSCE
T ss_pred             CeeeeCcCCCcCCCccc
Confidence            34456666666666653

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.40  E-value=0.014  Score=39.66  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=37.0

Q ss_pred             ccceeeeceeEEEecCCCCC----CCCCCC--CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCcc
Q psy10880         73 KSAHSSMLYEYRVTCDPHYY----GNGCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKA  132 (166)
Q Consensus        73 ~~~~~~l~~~~r~~C~~gyy----G~~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~  132 (166)
                      .+..+.+...|+|.|++||.    |..|..  .|.+.. .  +.+|..   ...|.|+ ||.|..|...
T Consensus        15 ~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~~~-C--~~~C~n~~g~y~C~C~-g~~G~~~~~~   79 (87)
T 1z6c_A           15 TAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENM-C--AQLCVNYPGGYTCYCD-GKKGFKLAQD   79 (87)
T ss_dssp             TSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHHSC-C--SSEECCCSSSCCEECC-SSSCCBCCTT
T ss_pred             CCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCCCC-C--CCEEEccCCCEEEECC-CCcCCcccCC
Confidence            35566777889999999998    777854  243221 1  134542   2466998 8888887653

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=94.30  E-value=0.014  Score=35.16  Aligned_cols=17  Identities=35%  Similarity=0.780  Sum_probs=13.8

Q ss_pred             CccCCCCCCCCCCCccc
Q psy10880        117 DRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~i  133 (166)
                      .|.|++||+|.+|+..+
T Consensus        27 ~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           27 TCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             EEECCTTEETTTTCEEC
T ss_pred             EEEcCCCCcCCcCCccc
Confidence            45999999999998654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.28  E-value=0.051  Score=49.78  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             CCccCCCCCC---CCCCCc-cccCCCCCCCCCCccC---CCCceeCCCCCccC
Q psy10880        116 GDRKCLPGWS---GDYCTK-AVQKLSPTKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       116 G~c~C~~Gwt---G~~C~~-~iC~~~c~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      +.|.|.+||+   |..|.. .-|.. ..+|. ..|.   ..|+|.|++||++.
T Consensus       315 ~~C~C~~G~~~~~~~~C~dideC~~-~~~C~-~~C~n~~g~y~C~C~~G~~~~  365 (699)
T 1n7d_A          315 YECLCPDGFQLVAQRRCEDIDECQD-PDTCS-QLCVNLEGGYKCQCEEGFQLD  365 (699)
T ss_dssp             CCCCCCSSSCCCSSSCCCCCCCCSS-SSSCT-TTCCBCSSCBCCCCCSSCBCC
T ss_pred             cEEeCCCCeEcCCCCcccCccccCC-CCccc-cccccCCCCeeeeeecccccC
Confidence            5779999999   778862 12431 22333 3554   35999999999975

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=94.24  E-value=0.0055  Score=57.27  Aligned_cols=44  Identities=14%  Similarity=-0.003  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCCCC-ccccCCCCCCCCCCccCCCCceeCCCCCccCCCCC
Q psy10880        118 RKCLPGWSGDYCT-KAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       118 c~C~~GwtG~~C~-~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~~~~~  165 (166)
                      .+|.+||+|.+|. .+.|...|.  .+|.|+. ++|.|.+||+|. .|.
T Consensus       520 ~~C~~gw~g~dc~i~~~Cp~~C~--ghG~C~~-G~C~Cd~G~~G~-~C~  564 (725)
T 2e26_A          520 FDKQQTWAIDNVYIGDGCLDMCS--GHGRCVQ-GSCVCDEQWGGL-YCD  564 (725)
T ss_dssp             CCTTCCEEEEEEEEESCSSGGGG--GSEEEET-TEEEECTTEEST-TSC
T ss_pred             CccCCCcccccccccCCCCcccC--CCcEECC-CCEeeCCCccCC-CcC
Confidence            3799999999999 466664222  3578865 899999999997 553

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=94.02  E-value=0.038  Score=33.68  Aligned_cols=15  Identities=27%  Similarity=0.693  Sum_probs=10.2

Q ss_pred             ccCCCCCCCCCCCcc
Q psy10880        118 RKCLPGWSGDYCTKA  132 (166)
Q Consensus       118 c~C~~GwtG~~C~~~  132 (166)
                      |+|++||+|.+|+..
T Consensus        30 C~C~~GytG~~Ce~~   44 (46)
T 1k36_A           30 CRCEVGYTGVRCEHF   44 (46)
T ss_dssp             EEECTTCSSTTSCCC
T ss_pred             EECCCCCccCCCCcc
Confidence            377777777777653

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=93.84  E-value=0.029  Score=39.83  Aligned_cols=43  Identities=7%  Similarity=-0.150  Sum_probs=28.0

Q ss_pred             ccCCCCCCCCCCCccccCCCCCCCCCCccC---CCCceeCCCCCccC
Q psy10880        118 RKCLPGWSGDYCTKAVQKLSPTKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       118 c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      -....||+|..|.+.-|......|. ..|.   ..|+|.|++||+|.
T Consensus        16 ~~~~~~~~~~~Cd~neC~~~~~~C~-~~C~n~~g~y~C~C~~Gy~g~   61 (107)
T 2w2n_E           16 PTTENLYFQGAMGTNECLDNNGGCS-YVCNDLKIGYECLCPDGFQLV   61 (107)
T ss_dssp             ----CCCCSCCBSCCGGGTGGGGCS-SEEECCSBSCEEECCTTCEEE
T ss_pred             cccCCCcCCCCCcCccCcCCCCCCC-CEeEeCCCCeEEECCCCcccc
Confidence            3667999999998766664322332 2454   35999999999983

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=93.77  E-value=0.025  Score=33.97  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             cccccccee--eeceeEEEecCCCCCCCCCCC
Q psy10880         69 EDEHKSAHS--SMLYEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        69 ~~~~~~~~~--~l~~~~r~~C~~gyyG~~C~~   98 (166)
                      +..+.|..+  ....+|+|.|+++|.|..|+.
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~   41 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT   41 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence            345667665  345789999999999999974

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=93.46  E-value=0.0058  Score=45.89  Aligned_cols=43  Identities=14%  Similarity=0.107  Sum_probs=24.0

Q ss_pred             CccCCCCCC----CCCCCccc---cCCCCCCC---CCCccCC-------CCceeCCCCCc
Q psy10880        117 DRKCLPGWS----GDYCTKAV---QKLSPTKA---LPNRTSR-------TLFCVLEPSMQ  159 (166)
Q Consensus       117 ~c~C~~Gwt----G~~C~~~i---C~~~c~~c---~nG~C~~-------~~~C~C~~G~~  159 (166)
                      +|+|++||+    |..|....   |.....++   +++.|..       .|+|.|++||.
T Consensus        25 ~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~   84 (162)
T 1uzk_A           25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA   84 (162)
T ss_dssp             EEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred             EEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence            349999998    88896321   43222222   2345642       47888888887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.41  E-value=0.072  Score=45.17  Aligned_cols=53  Identities=17%  Similarity=0.403  Sum_probs=36.3

Q ss_pred             cceeeeceeEEEecCCCCC---CCCCCC--CCCCCCCCCCcccCCC---CCCccCCCCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYY---GNGCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDY  128 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyy---G~~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~  128 (166)
                      ..++.+..+|+|.|++||.   |..|..  .|.....+ .+ +|..   ...|.|.+||++..
T Consensus        12 ~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~~~~C-~~-~C~n~~g~~~C~C~~g~~~~~   72 (400)
T 3p5b_L           12 HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC-SQ-LCVNLEGGYKCQCEEGFQLDP   72 (400)
T ss_dssp             SEEEECSSSEEEECCTTEEECSSSCEEECCCCSTTSSC-SS-CCBCCSSSCBCCCCTTCCCCT
T ss_pred             CEeECCCCCeEEECCCCCCcCCCCcccCchhhhccCCC-CC-ccCCCccceeeeccccccccc
Confidence            4567778899999999998   888864  46521111 12 5543   25779999998753

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=93.18  E-value=0.073  Score=38.72  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=36.5

Q ss_pred             cccccceeeec--eeE-EEecCCCCCCCCCCC----CCCCCCCCCCcccCCCCCCccCCCCCCCCCCCc
Q psy10880         70 DEHKSAHSSML--YEY-RVTCDPHYYGNGCAT----LCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTK  131 (166)
Q Consensus        70 ~~~~~~~~~l~--~~~-r~~C~~gyyG~~C~~----~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~C~~  131 (166)
                      ..++|+++...  ..+ +|.|+++|.|..|++    .|....  ...|++      .+..+++|..|..
T Consensus         3 C~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~~C~~g~--G~~YrG------~~~~t~sG~~Cq~   63 (122)
T 2fd6_A            3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGN--GHFYRG------KASTDTMGRPCLP   63 (122)
T ss_dssp             CCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSCCSBCSS--CTTCCS------CCCBBTTSCBBCC
T ss_pred             CCCcCCcCCCcccCCCCCccCCCCCCCccccccCcCCCcccc--ccccee------eccccccCCcccC
Confidence            34566676653  344 999999999999986    354321  124555      7788888888863

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=93.07  E-value=0.03  Score=35.93  Aligned_cols=18  Identities=44%  Similarity=0.903  Sum_probs=15.0

Q ss_pred             CccCCCCCCCCCCCcccc
Q psy10880        117 DRKCLPGWSGDYCTKAVQ  134 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC  134 (166)
                      .|.|++||+|.+|+..+.
T Consensus        33 ~C~C~~Gf~G~~Ce~~i~   50 (63)
T 1hae_A           33 LCKCQPGFTGARCTENVP   50 (63)
T ss_dssp             EEECCTTEESTTSCEECC
T ss_pred             EEECCCCCcCCccCcCcC
Confidence            459999999999987663

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=93.04  E-value=0.02  Score=50.50  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             ccCCCCCCccCCCCCCCCCCCccccCCCCCCCCCCccC-CCCceeCCCCCc
Q psy10880        110 YTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTS-RTLFCVLEPSMQ  159 (166)
Q Consensus       110 y~C~~~G~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~-~~~~C~C~~G~~  159 (166)
                      ++|....+|+|.+||+|..|+...|.      ++|.|. ..++|.-|.|..
T Consensus       377 g~C~~~~~C~C~~G~~G~~Ce~c~C~------~~g~C~~~~Gqc~~~~~~~  421 (426)
T 3zyj_B          377 GTCHNNVRCLCPAAYTGILCEKLRCE------EAGSCGSDSGQGAPPHGTH  421 (426)
T ss_dssp             ---------------------------------------------------
T ss_pred             CCcCCCCCCcCCCCCcCCCCcCCCCC------CCCcccCCCCccCCCCCcc
Confidence            35655568899999999999763322      246676 468888877643

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=93.01  E-value=0.034  Score=46.34  Aligned_cols=48  Identities=29%  Similarity=0.596  Sum_probs=34.4

Q ss_pred             EEEecCCCCCCCCCC----C--------CCCCCC---CCCCcccCCCCCCccCCCCC------CCCCCCc
Q psy10880         83 YRVTCDPHYYGNGCA----T--------LCRPRD---DSFGHYTCSHTGDRKCLPGW------SGDYCTK  131 (166)
Q Consensus        83 ~r~~C~~gyyG~~C~----~--------~C~p~~---~~~ghy~C~~~G~c~C~~Gw------tG~~C~~  131 (166)
                      .+|.|.++|+|..|+    .        .|++..   .+.||++| .-|+|+|.++|      .|.||+.
T Consensus       207 G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C-~CG~C~C~~~~~~~~~~~G~~~~~  275 (280)
T 2p26_A          207 GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC-VCGQCLCHTSDVPGKLIYGQYCEH  275 (280)
T ss_dssp             TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEE-ETTEEEECCCSSTTCEEESTTSCE
T ss_pred             CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceE-eCCeeECcCCCCCCeeEeeEeccc
Confidence            368999999999996    2        476421   24567777 45899998887      5667753

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=92.68  E-value=0.043  Score=34.46  Aligned_cols=16  Identities=25%  Similarity=0.675  Sum_probs=12.4

Q ss_pred             ccCCCCCCCCCCCccc
Q psy10880        118 RKCLPGWSGDYCTKAV  133 (166)
Q Consensus       118 c~C~~GwtG~~C~~~i  133 (166)
                      |+|++||+|.+|+..+
T Consensus        31 C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           31 CNCVVGYIGERCQYRD   46 (53)
T ss_dssp             EEECTTEESTTSCEEC
T ss_pred             EecCCCCcCCCCCcCC
Confidence            3888888888887765

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=92.23  E-value=0.038  Score=34.70  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             ccccccccee--eeceeEEEecCCCCCCCCCCC
Q psy10880         68 TEDEHKSAHS--SMLYEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        68 ~~~~~~~~~~--~l~~~~r~~C~~gyyG~~C~~   98 (166)
                      +...+.|.++  .....|+|.|+++|.|..|+.
T Consensus        12 ~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~   44 (53)
T 1nql_B           12 GYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   44 (53)
T ss_dssp             CEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence            3456667776  334679999999999999874

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=92.13  E-value=0.035  Score=36.09  Aligned_cols=20  Identities=5%  Similarity=0.135  Sum_probs=14.1

Q ss_pred             CccC---CCCceeCCCCCc-cCCCC
Q psy10880        144 NRTS---RTLFCVLEPSMQ-LYGNC  164 (166)
Q Consensus       144 G~C~---~~~~C~C~~G~~-G~~~~  164 (166)
                      |.|.   ..|.|.|++||+ |. +|
T Consensus        25 gtC~~~~g~y~C~C~~Gy~~G~-~C   48 (61)
T 2k2s_B           25 GTCKETNSGYICRCNQGYRISL-DG   48 (61)
T ss_dssp             CEEEECSSEEEEECCTTEEEEE-CS
T ss_pred             cccccCCCceEeECCCCCccCC-CC
Confidence            4665   248888888888 76 44

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=91.98  E-value=0.083  Score=33.80  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=22.9

Q ss_pred             cccccceeee-----ceeEEEecCCCCCCCCCCC
Q psy10880         70 DEHKSAHSSM-----LYEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        70 ~~~~~~~~~l-----~~~~r~~C~~gyyG~~C~~   98 (166)
                      ..+.|.++.+     ...|+|.|++||.|..|+.
T Consensus        14 C~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~   47 (63)
T 1hae_A           14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE   47 (63)
T ss_dssp             SCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred             CCCCcEEecCCccCCCCCEEEECCCCCcCCccCc
Confidence            4556777653     4689999999999999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=91.76  E-value=0.048  Score=45.92  Aligned_cols=55  Identities=18%  Similarity=0.399  Sum_probs=15.0

Q ss_pred             ceeeeceeEEEecCCCCC----CCCCCC--CCCCCCCCCCcccCCC---CCCccCCCCCC----CCCCCc
Q psy10880         75 AHSSMLYEYRVTCDPHYY----GNGCAT--LCRPRDDSFGHYTCSH---TGDRKCLPGWS----GDYCTK  131 (166)
Q Consensus        75 ~~~~l~~~~r~~C~~gyy----G~~C~~--~C~p~~~~~ghy~C~~---~G~c~C~~Gwt----G~~C~~  131 (166)
                      .+.....+|+|.|.+||.    |..|..  .|.....+ .+. |..   ...|.|.+||+    |..|..
T Consensus        16 ~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C-~~~-C~~~~g~~~C~C~~g~~l~~d~~~C~~   83 (386)
T 3v65_B           16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC-SQG-CTNSEGAFQCWCEAGYELRPDRRSCKA   83 (386)
T ss_dssp             ------------------------------------CC-TTE-EC-----CCEECCTTEEECTTSSCEEE
T ss_pred             CCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcc-cCc-CCCCCCCCeEEECCCceEcCCCCeECC
Confidence            344556679999999998    889964  47521111 122 543   25779999998    777853

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=91.63  E-value=0.081  Score=34.33  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=10.0

Q ss_pred             ceeeeceeEEEecCCCCC-CCCC
Q psy10880         75 AHSSMLYEYRVTCDPHYY-GNGC   96 (166)
Q Consensus        75 ~~~~l~~~~r~~C~~gyy-G~~C   96 (166)
                      .++.....|+|.|++||. |..|
T Consensus        26 tC~~~~g~y~C~C~~Gy~~G~~C   48 (61)
T 2k2s_B           26 TCKETNSGYICRCNQGYRISLDG   48 (61)
T ss_dssp             EEEECSSEEEEECCTTEEEEECS
T ss_pred             ccccCCCceEeECCCCCccCCCC
Confidence            334444444444444444 4444

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=91.62  E-value=0.094  Score=32.44  Aligned_cols=16  Identities=25%  Similarity=0.638  Sum_probs=12.4

Q ss_pred             CccCCCCCCCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA  132 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~  132 (166)
                      .|+|++||+|.+|+..
T Consensus        34 ~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A           34 SCECAIGFMGQRCEYK   49 (52)
T ss_dssp             EEECCTTEESTTSCEE
T ss_pred             EEECCCCCcCCCCccc
Confidence            4488888888888754

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=91.11  E-value=0.24  Score=42.73  Aligned_cols=16  Identities=25%  Similarity=0.312  Sum_probs=12.5

Q ss_pred             CccCCCCCCCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA  132 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~  132 (166)
                      .|.|.+||+|..|++-
T Consensus       273 ~C~C~~nt~G~~Ce~C  288 (375)
T 4aqt_A          273 MCNCKHNTYGVDCEKC  288 (375)
T ss_dssp             EECCCTTEESTTSCEE
T ss_pred             eeeCcCCCcCCCcccC
Confidence            4588899999888753

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=90.63  E-value=0.16  Score=36.91  Aligned_cols=40  Identities=10%  Similarity=0.047  Sum_probs=26.4

Q ss_pred             CccCCCCCCCCCCCccccCCCCCCCCCCccCCCCceeCCCCCccC
Q psy10880        117 DRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLY  161 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~iC~~~c~~c~nG~C~~~~~C~C~~G~~G~  161 (166)
                      .|.|++||+|.+|++.+..    .|..+. ...|++.+..++.|.
T Consensus        20 ~C~Cp~g~~G~~Ce~~~~~----~C~~g~-G~~YrG~~~~t~sG~   59 (122)
T 2fd6_A           20 WCNCPKKFGGQHCEIDKSK----TCYEGN-GHFYRGKASTDTMGR   59 (122)
T ss_dssp             EEECCTTEESTTSCEESSC----CSBCSS-CTTCCSCCCBBTTSC
T ss_pred             CccCCCCCCCccccccCcC----CCcccc-cccceeeccccccCC
Confidence            4599999999999987632    122111 124777777777765

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=90.47  E-value=0.037  Score=40.94  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=17.6

Q ss_pred             CCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        140 KALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       140 ~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      +|++ |.|.   ..|+|.|++||+|. .|+
T Consensus       126 ~C~~~g~C~~~~~~~~c~C~~g~~G~-~Ce  154 (162)
T 1g1s_A          126 SCSKQGECLETIGNYTCSCYPGFYGP-ECE  154 (162)
T ss_dssp             GGGGSEEEEECSSSEEEEECTTEEST-TSC
T ss_pred             CCCCCCEEecCCCCceEeCCCCCcCc-ccc
Confidence            3443 5665   35899999999987 665

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=90.39  E-value=0.13  Score=32.88  Aligned_cols=17  Identities=24%  Similarity=0.659  Sum_probs=8.5

Q ss_pred             eEEEecCCCCCCCCCCC
Q psy10880         82 EYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~   98 (166)
                      .|.|.|++||.|..|+.
T Consensus        32 ~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           32 VYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             EEEEEECTTEESSSSCE
T ss_pred             CEEeECCCCCccCCCcc
Confidence            34455555555555543

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=90.16  E-value=0.14  Score=37.78  Aligned_cols=17  Identities=29%  Similarity=0.704  Sum_probs=14.6

Q ss_pred             CccCCCCCCCCCCCccc
Q psy10880        117 DRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~i  133 (166)
                      .|+|.+||+|.+|+..+
T Consensus       141 ~c~C~~g~~G~~Ce~~~  157 (162)
T 1g1s_A          141 TCSCYPGFYGPECEYVR  157 (162)
T ss_dssp             EEEECTTEESTTSCEEC
T ss_pred             eEeCCCCCcCcccccCc
Confidence            45999999999998764

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=90.01  E-value=0.23  Score=43.44  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=11.1

Q ss_pred             CCcee-CCCCCccCCCCC
Q psy10880        149 TLFCV-LEPSMQLYGNCA  165 (166)
Q Consensus       149 ~~~C~-C~~G~~G~~~~~  165 (166)
                      .++|. |+.++.|. +|+
T Consensus       356 ~G~C~~C~~nt~G~-~CE  372 (403)
T 2y38_A          356 GGVCLDCQHHTTGI-NCE  372 (403)
T ss_dssp             CEEESSCCSSEEST-TSC
T ss_pred             CCCCCCCcCcCcCC-CCC
Confidence            47885 88877776 554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=89.67  E-value=0.094  Score=49.14  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             CCccCCCCCC---CCCCCc-cccCCCCCCCCCCccC---CCCceeCCCCCccC
Q psy10880        116 GDRKCLPGWS---GDYCTK-AVQKLSPTKALPNRTS---RTLFCVLEPSMQLY  161 (166)
Q Consensus       116 G~c~C~~Gwt---G~~C~~-~iC~~~c~~c~nG~C~---~~~~C~C~~G~~G~  161 (166)
                      +.|.|.+||+   |..|.. .-|. .+..|. ..|.   ..|+|.|++||++.
T Consensus       333 y~C~C~~Gy~l~~g~~C~dideC~-~~~~C~-~~C~n~~gsy~C~C~~Gy~l~  383 (791)
T 3m0c_C          333 YECLCPDGFQLVAQRRCEDIDECQ-DPDTCS-QLCVNLEGGYKCQCEEGFQLD  383 (791)
T ss_dssp             EEEECCTTCEEETTTEEECCCCCS-SSSSCT-TTCCBCSSCBCCCCCSSEECC
T ss_pred             cccCCCCCCccCCCCccccCcccC-CCCCCC-CeeecCCCCceeecCCCCEeC
Confidence            4679999995   788852 2243 233333 3555   35999999999874

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=86.91  E-value=0.14  Score=32.63  Aligned_cols=16  Identities=25%  Similarity=0.638  Sum_probs=14.0

Q ss_pred             CccCCCCCCCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA  132 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~  132 (166)
                      .|.|++||+|.+|+..
T Consensus        34 ~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D           34 SCECAIGFMGQRCEYK   49 (58)
T ss_dssp             EEEECTTEESSSSCEE
T ss_pred             EeECCCCCccCCCccc
Confidence            4699999999999864

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=86.76  E-value=0.33  Score=30.27  Aligned_cols=12  Identities=17%  Similarity=0.049  Sum_probs=8.1

Q ss_pred             CceeCCCCCccC
Q psy10880        150 LFCVLEPSMQLY  161 (166)
Q Consensus       150 ~~C~C~~G~~G~  161 (166)
                      +.|.|++||+|.
T Consensus        30 ~~C~C~~gy~G~   41 (50)
T 3e50_C           30 PACVCHSGYVGA   41 (50)
T ss_pred             eEEECCCCCccc
Confidence            566777777665

>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}

Probab=86.62  E-value=0.063  Score=46.81  Aligned_cols=34  Identities=24%  Similarity=0.521  Sum_probs=25.2

Q ss_pred             CCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCCCCC--CCcc
Q psy10880         92 YGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDY--CTKA  132 (166)
Q Consensus        92 yG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~GwtG~~--C~~~  132 (166)
                      .|+.|-..      +.||+.|.. |.|+|.+||+|..  |...
T Consensus       190 Ig~~Cp~~------CsGhG~C~~-g~C~Cd~G~~g~d~~C~~~  225 (387)
T 2ddu_A          190 ISEPCPSY------CSGHGDCIS-GVCFCDLGYTAAQGTCVSN  225 (387)
T ss_dssp             EESCCGGG------GGGSEEEET-TEEEECTTEEEETTEEEES
T ss_pred             ecccCccc------cCCCceecC-CeEEecCCcccCCCccccc
Confidence            45555544      457999954 9999999999975  7644

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=85.76  E-value=0.56  Score=40.93  Aligned_cols=20  Identities=25%  Similarity=0.798  Sum_probs=15.2

Q ss_pred             eEEEecCCCCCCCCCCCCCCC
Q psy10880         82 EYRVTCDPHYYGNGCATLCRP  102 (166)
Q Consensus        82 ~~r~~C~~gyyG~~C~~~C~p  102 (166)
                      ..+|.|..++.|..|++ |.|
T Consensus       285 ~g~C~C~hnT~G~~CEr-C~p  304 (403)
T 2y38_A          285 RLQCACQHNTCGGSCDR-CCP  304 (403)
T ss_dssp             CEEECCCTTEESSSCCE-ECT
T ss_pred             ceEeECcCcCcCCCCCC-CCc
Confidence            35689999999999974 443

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=85.69  E-value=0.23  Score=36.62  Aligned_cols=22  Identities=9%  Similarity=0.131  Sum_probs=14.2

Q ss_pred             CCccC---CCCceeCCCCCccCCCCC
Q psy10880        143 PNRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       143 nG~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      +|.|.   ..|+|.|++||+|. .|+
T Consensus       130 ~g~C~~~~~~~~c~C~~g~~g~-~C~  154 (164)
T 3cfw_A          130 HGECVEIINNYTCNCDVGYYGP-QCQ  154 (164)
T ss_dssp             SEEEEEETTEEEEEECTTCBSS-SSC
T ss_pred             CCeecccCCCceeeeCCCcccc-ccc
Confidence            34554   34777788777776 554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.18  E-value=2.2  Score=38.90  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=25.5

Q ss_pred             CCccCCCCCCCC--CCCccccCCCCCCCCCCccC---CCCceeCCCCCcc
Q psy10880        116 GDRKCLPGWSGD--YCTKAVQKLSPTKALPNRTS---RTLFCVLEPSMQL  160 (166)
Q Consensus       116 G~c~C~~GwtG~--~C~~~iC~~~c~~c~nG~C~---~~~~C~C~~G~~G  160 (166)
                      +.+.|..|..+.  .|...-|......|. ..|.   ..|+|.|++||++
T Consensus       277 ~~~dC~dgsDe~~~~C~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~~  325 (699)
T 1n7d_A          277 MARDCRDWSDEPIKECGTNECLDNNGGCS-HVCNDLKIGYECLCPDGFQL  325 (699)
T ss_dssp             SSCCSSSSCSCCCSSCCCCCTTSSTTTSC-TTCCCCTTCCCCCCCSSSCC
T ss_pred             ccceecCcccccccccccccccccccCcC-CCcccCCCCcEEeCCCCeEc
Confidence            556677776654  344333433222222 2344   3599999999995

>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*

Probab=84.88  E-value=0.27  Score=43.90  Aligned_cols=15  Identities=47%  Similarity=1.207  Sum_probs=7.5

Q ss_pred             CCccCCCCCCCCCCC
Q psy10880        116 GDRKCLPGWSGDYCT  130 (166)
Q Consensus       116 G~c~C~~GwtG~~C~  130 (166)
                      |.|.|.+||.|..|+
T Consensus       458 G~C~C~~G~~G~~Ce  472 (472)
T 3t3p_B          458 GVCRCGPGWLGSQCE  472 (472)
T ss_dssp             TEEEECTTC------
T ss_pred             CceECcCCCCCCCCC
Confidence            788888888888874

>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}

Probab=82.69  E-value=0.36  Score=43.33  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=24.8

Q ss_pred             CCCcccCCCCCCccCCCCCCCCCCCccc
Q psy10880        106 SFGHYTCSHTGDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       106 ~~ghy~C~~~G~c~C~~GwtG~~C~~~i  133 (166)
                      +.+|+.|+..++|+|.+||..++|..+.
T Consensus       456 C~~~GVCNn~~~CHC~~GwaPP~C~~~~  483 (510)
T 3g5c_A          456 CSGNGVCSNELKCVCNRHWIGSDCNTYF  483 (510)
T ss_dssp             GGGTEEEBTTSCEEECTTEESTTSCEEC
T ss_pred             cCCCCeeCCCCCcCCCCCCCCCCCCCCC
Confidence            5578999999999999999999999764

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=82.27  E-value=0.16  Score=37.05  Aligned_cols=21  Identities=14%  Similarity=0.423  Sum_probs=16.8

Q ss_pred             CccC---CCCceeCCCCCccCCCCC
Q psy10880        144 NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       144 G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      |.|.   ..|.|.|.+||+|. .|+
T Consensus       131 g~C~~~~~~~~c~C~~g~~g~-~Ce  154 (157)
T 1g1t_A          131 GECVETINNYTCKCDPGFSGL-KCE  154 (157)
T ss_dssp             EEEEEETTEEEEEECTTEEST-TSC
T ss_pred             CEeecCCCCeeEECCCCccCc-ccc
Confidence            6675   35899999999998 665

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=81.73  E-value=0.43  Score=29.59  Aligned_cols=16  Identities=25%  Similarity=0.650  Sum_probs=13.0

Q ss_pred             CccCCCCCCCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA  132 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~  132 (166)
                      .|+|.+||+|..|+..
T Consensus        31 ~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           31 SCVCDEGYIGARCERV   46 (50)
T ss_dssp             EECCCTTEETTTTCEE
T ss_pred             EEECCCCcccCCCCee
Confidence            4589999999999764

>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*

Probab=80.61  E-value=0.33  Score=43.65  Aligned_cols=20  Identities=45%  Similarity=1.069  Sum_probs=0.0

Q ss_pred             CcccCCCCCCccCCCCCCCCCCC
Q psy10880        108 GHYTCSHTGDRKCLPGWSGDYCT  130 (166)
Q Consensus       108 ghy~C~~~G~c~C~~GwtG~~C~  130 (166)
                      |.+.|   |.|+|.+||.|..|+
T Consensus       474 G~~~C---G~C~C~~G~~G~~Ce  493 (503)
T 3v4v_B          474 GHLQC---GVCSCAPGRLGRLCE  493 (503)
T ss_dssp             -----------------------
T ss_pred             eeEeC---CceECcCCCcCCCCC
Confidence            44556   899999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1qkla_	127	a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId:	4e-06
d1qkla_	127	a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId:	1e-04
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	0.001
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	0.001

>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: RPB6/omega subunit-like
superfamily: RPB6/omega subunit-like
family: RPB6
domain: RPB6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
          M+D+++N D DD DD ++D+  DD ++ +++  E
Sbjct: 1  MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQE 34

>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: RPB6/omega subunit-like
superfamily: RPB6/omega subunit-like
family: RPB6
domain: RPB6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
          +D++D+ D DD DD ++D+  DD ++ E   
Sbjct: 2  SDNEDNFDGDDFDDVEEDEGLDDLENAEEEG 32

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 15/38 (39%), Positives = 17/38 (44%)

Query: 5   DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
            GE       N  D     DDD+   DD  DDD+D DD
Sbjct: 105 YGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 8   WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
                   N+ D     DDD+   DD  DDD+D D++
Sbjct: 107 ELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	97.0
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.99
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	96.96
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.89
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	96.84
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	96.66
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	96.59
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.56
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.51
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	96.48
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	96.47
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.45
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	96.28
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	96.19
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.13
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	96.1
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	96.06
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.95
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.87
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	95.82
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.76
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	95.42
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	94.98
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	94.96
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	94.89
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	94.08
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	93.79
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	93.06
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	92.82
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	92.74
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	91.85
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	91.66
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.19
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	91.0
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	90.44
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	89.98
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	89.67
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	89.66
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	88.84
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	88.35
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	84.44
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	84.44
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	83.51
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	82.45
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	81.18
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	80.88
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	80.76

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00015  Score=39.91  Aligned_cols=23  Identities=43%  Similarity=1.027  Sum_probs=19.2

Q ss_pred             CCcccCCCCCCccCCCCCCCCCCC
Q psy10880        107 FGHYTCSHTGDRKCLPGWSGDYCT  130 (166)
Q Consensus       107 ~ghy~C~~~G~c~C~~GwtG~~C~  130 (166)
                      .+|+.| .=|.|+|.+||+|.+|.
T Consensus         6 ~ghG~C-~CG~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           6 SGHGQC-SCGDCLCDSDWTGYYCN   28 (31)
T ss_dssp             CCCTTC-CSTTTCCCTTEESSSSC
T ss_pred             cCCCcc-cCCceEccCCccccccc
Confidence            357777 56899999999999996

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00016  Score=42.08  Aligned_cols=27  Identities=11%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             CCCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        138 PTKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      ..||+| |.|.   ..|+|.|++||+|. +|+
T Consensus         6 ~~PC~n~g~C~~~~~~y~C~C~~G~~G~-~Ce   36 (39)
T d2vj3a2           6 SNPCQNDATCLDQIGEFQCICMPGYEGV-HCE   36 (39)
T ss_dssp             TCCCCSSCEEEECSSCEEEECCTTEESS-SSC
T ss_pred             CCCCCCCCEEECCCCCEEEeCCCCCccC-cCe
Confidence            445555 4675   35889999999887 664

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00013  Score=44.42  Aligned_cols=26  Identities=8%  Similarity=-0.004  Sum_probs=15.7

Q ss_pred             CCCCCCccC---CCCceeCCCCCccCCCCC
Q psy10880        139 TKALPNRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~nG~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      .||+||.|.   ..|+|.|++||+|. +|+
T Consensus        14 ~PC~nG~C~~~~~~y~C~C~~G~~G~-~Ce   42 (48)
T d1autl1          14 LCCGHGTCIDGIGSFSCDCRSGWEGR-FCQ   42 (48)
T ss_dssp             TTTTSEEECCCSSCCCEEECTTEEST-TSC
T ss_pred             CCCCCCEEECCCCCCeEeCCCCCcCC-Ccc
Confidence            444556665   23777777777776 554

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00025  Score=41.15  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=19.1

Q ss_pred             CCCCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        137 SPTKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       137 ~c~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      ...||+| |.|.   ..|+|.|++||+|. +|+
T Consensus         7 ~~~PC~ngg~C~~~~~~y~C~C~~g~~G~-~Ce   38 (39)
T d1edmb_           7 ESNPCLNGGSCKDDINSYECWCPFGFEGK-NCE   38 (39)
T ss_dssp             TTCCCCTTCEEEEETTEEEEECCTTCCST-TSC
T ss_pred             CCCCCCCCcEEEcCCCCEEEECCCCCCCC-CCC
Confidence            3455655 5665   34889999999887 664

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00034  Score=40.61  Aligned_cols=27  Identities=11%  Similarity=0.219  Sum_probs=18.0

Q ss_pred             CCCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        138 PTKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      ..||+| |.|.   ..|+|.|++||+|. .|+
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~G~~G~-~Ce   35 (39)
T d1xkba1           5 TSPCQNQGKCKDGLGEYTCTCLEGFEGK-NCE   35 (39)
T ss_dssp             TCCCCSSCEECCCSSSCCEECCTTEETT-TTC
T ss_pred             CCCCCCCcEEECCCCCEEEECCCCCCcC-cCe
Confidence            345555 5665   34888888888887 554

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00038  Score=39.37  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=18.4

Q ss_pred             CCCCCC-CccC---CCCceeCCCCCccCCCC
Q psy10880        138 PTKALP-NRTS---RTLFCVLEPSMQLYGNC  164 (166)
Q Consensus       138 c~~c~n-G~C~---~~~~C~C~~G~~G~~~~  164 (166)
                      +.||+| |.|.   ..|+|.|++||+|. .|
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~g~~G~-~C   34 (35)
T d2vj3a3           5 SSPCLHNGRCLDKINEFQCECPTGFTGH-LC   34 (35)
T ss_dssp             TCCSTTTCEEEECSSCEEEECCTTEESS-SS
T ss_pred             CCCCCCCcEEECCCCCeEEECCCCCCCC-Cc
Confidence            445555 5675   35899999999987 54

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00056  Score=39.97  Aligned_cols=27  Identities=7%  Similarity=0.260  Sum_probs=17.1

Q ss_pred             CCCCCC-CccC-----CCCceeCCCCCccCCCCC
Q psy10880        138 PTKALP-NRTS-----RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~-----~~~~C~C~~G~~G~~~~~  165 (166)
                      +.||+| |.|.     ..|+|.|++||+|. .|+
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~-~Ce   35 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGK-SCE   35 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSS-SCC
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCC-CcC
Confidence            345555 4564     23788888888887 554

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00053  Score=39.71  Aligned_cols=13  Identities=38%  Similarity=1.073  Sum_probs=8.1

Q ss_pred             cCCCCCCCCCCCc
Q psy10880        119 KCLPGWSGDYCTK  131 (166)
Q Consensus       119 ~C~~GwtG~~C~~  131 (166)
                      +|++||+|.+|++
T Consensus        25 ~C~~G~~G~~Ce~   37 (39)
T d2vj3a2          25 ICMPGYEGVHCEV   37 (39)
T ss_dssp             ECCTTEESSSSCE
T ss_pred             eCCCCCccCcCee
Confidence            6666666666654

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00054  Score=40.09  Aligned_cols=27  Identities=7%  Similarity=0.079  Sum_probs=18.1

Q ss_pred             CCCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        138 PTKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      ..+|++ |.|.   ..|+|.|++||+|. .|+
T Consensus        10 ~~pC~n~g~C~n~~g~y~C~C~~G~~G~-~Ce   40 (42)
T d2vj3a1          10 ANPCEHAGKCINTLGSFECQCLQGYTGP-RCE   40 (42)
T ss_dssp             SCSSSTTCEEEECSSSEEEECCTTEEST-TSC
T ss_pred             CCCCCCCcEeECCCCCEEeECCCCCcCC-CCc
Confidence            345554 5675   34888888888887 554

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.48  E-value=0.00026  Score=40.59  Aligned_cols=26  Identities=15%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             CCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        139 TKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      .||+| |.|.   ..|+|.|++||+|. +|+
T Consensus         8 ~PC~ngg~C~~~~~~y~C~C~~g~~G~-~Ce   37 (37)
T d2c4fl1           8 SPCQNGGSCKDQLQSYICFCLPAFEGR-NCE   37 (37)
T ss_dssp             CCCCTTCEEEEETTEEEEECCTTEEST-TSC
T ss_pred             CCCCCCCEEECCCCCeEEECCCCCcCC-CCC
Confidence            45554 5665   34899999999987 553

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00071  Score=40.96  Aligned_cols=33  Identities=33%  Similarity=0.772  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCcccCCC---CCCccCCCCCCCCCCCccc
Q psy10880         99 LCRPRDDSFGHYTCSH---TGDRKCLPGWSGDYCTKAV  133 (166)
Q Consensus        99 ~C~p~~~~~ghy~C~~---~G~c~C~~GwtG~~C~~~i  133 (166)
                      .|.+..-  .|++|..   .+.|.|.+||+|.+|++.|
T Consensus        10 ~C~~~PC--~nG~C~~~~~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1          10 PCASLCC--GHGTCIDGIGSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             SSSSTTT--TSEEECCCSSCCCEEECTTEESTTSCEEC
T ss_pred             cccCCCC--CCCEEECCCCCCeEeCCCCCcCCCccccc
Confidence            4554332  3567764   3688999999999999876

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0012  Score=38.11  Aligned_cols=25  Identities=16%  Similarity=0.421  Sum_probs=11.1

Q ss_pred             cccceeeeceeEEEecCCCCCCCCC
Q psy10880         72 HKSAHSSMLYEYRVTCDPHYYGNGC   96 (166)
Q Consensus        72 ~~~~~~~l~~~~r~~C~~gyyG~~C   96 (166)
                      +.|+.+.....|.|.|+++|.|..|
T Consensus        13 ngg~C~~~~~~y~C~C~~g~~G~~C   37 (39)
T d1edmb_          13 NGGSCKDDINSYECWCPFGFEGKNC   37 (39)
T ss_dssp             TTCEEEEETTEEEEECCTTCCSTTS
T ss_pred             CCcEEEcCCCCEEEECCCCCCCCCC
Confidence            3344444444444444444444444

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.28  E-value=0.0012  Score=37.66  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=14.1

Q ss_pred             ccccceeeeceeEEEecCCCCCCCCC
Q psy10880         71 EHKSAHSSMLYEYRVTCDPHYYGNGC   96 (166)
Q Consensus        71 ~~~~~~~~l~~~~r~~C~~gyyG~~C   96 (166)
                      .+.|..+.....|.|+|+++|.|..|
T Consensus        11 ~ngg~C~~~~~~y~C~C~~g~~G~~C   36 (37)
T d2c4fl1          11 QNGGSCKDQLQSYICFCLPAFEGRNC   36 (37)
T ss_dssp             CTTCEEEEETTEEEEECCTTEESTTS
T ss_pred             CCCCEEECCCCCeEEECCCCCcCCCC
Confidence            34455555555555555555555555

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00045  Score=40.63  Aligned_cols=22  Identities=36%  Similarity=0.975  Sum_probs=19.3

Q ss_pred             CcccCCCCCCccCCCCCCCCCCC
Q psy10880        108 GHYTCSHTGDRKCLPGWSGDYCT  130 (166)
Q Consensus       108 ghy~C~~~G~c~C~~GwtG~~C~  130 (166)
                      +|++| ..|+|+|.+||+|+.|+
T Consensus        19 ~hG~C-~~G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLC-FCGKCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEE-ETTEEEECTTCCTTTTC
T ss_pred             CCCeE-ECCEEEcCCCCcccCcc
Confidence            38888 56999999999999996

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0013  Score=38.42  Aligned_cols=12  Identities=42%  Similarity=1.234  Sum_probs=7.3

Q ss_pred             cCCCCCCCCCCC
Q psy10880        119 KCLPGWSGDYCT  130 (166)
Q Consensus       119 ~C~~GwtG~~C~  130 (166)
                      .|++||+|.+|+
T Consensus        29 ~C~~G~~G~~Ce   40 (42)
T d2vj3a1          29 QCLQGYTGPRCE   40 (42)
T ss_dssp             ECCTTEESTTSC
T ss_pred             ECCCCCcCCCCc
Confidence            566666666664

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0015  Score=36.72  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=14.2

Q ss_pred             ccccceeeeceeEEEecCCCCCCCCC
Q psy10880         71 EHKSAHSSMLYEYRVTCDPHYYGNGC   96 (166)
Q Consensus        71 ~~~~~~~~l~~~~r~~C~~gyyG~~C   96 (166)
                      .+.|..+.+...|.|.|+++|.|..|
T Consensus         9 ~ngg~C~~~~~~y~C~C~~g~~G~~C   34 (35)
T d2vj3a3           9 LHNGRCLDKINEFQCECPTGFTGHLC   34 (35)
T ss_dssp             TTTCEEEECSSCEEEECCTTEESSSS
T ss_pred             CCCcEEECCCCCeEEECCCCCCCCCc
Confidence            44455555555555555555555555

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0015  Score=37.60  Aligned_cols=14  Identities=50%  Similarity=1.030  Sum_probs=7.8

Q ss_pred             cCCCCCCCCCCCcc
Q psy10880        119 KCLPGWSGDYCTKA  132 (166)
Q Consensus       119 ~C~~GwtG~~C~~~  132 (166)
                      .|++||+|.+|+.+
T Consensus        25 ~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2          25 KCDPGFSGLKCEQI   38 (39)
T ss_dssp             EECTTEESTTSCEE
T ss_pred             eCCCCCcCcCcCcc
Confidence            55555555555543

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0017  Score=37.66  Aligned_cols=13  Identities=38%  Similarity=1.025  Sum_probs=7.0

Q ss_pred             cCCCCCCCCCCCc
Q psy10880        119 KCLPGWSGDYCTK  131 (166)
Q Consensus       119 ~C~~GwtG~~C~~  131 (166)
                      .|++||+|.+|+.
T Consensus        25 ~C~~g~~G~~Ce~   37 (40)
T d1g1sa2          25 SCYPGFYGPECEY   37 (40)
T ss_dssp             EECTTEESTTSCE
T ss_pred             eCCCCccCCCCCC
Confidence            5555555555543

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.00065  Score=39.47  Aligned_cols=27  Identities=11%  Similarity=0.140  Sum_probs=20.1

Q ss_pred             CCCCCC-CccC---CCCceeCCCCCccCCCCC
Q psy10880        138 PTKALP-NRTS---RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~---~~~~C~C~~G~~G~~~~~  165 (166)
                      ..||+| |.|.   ..|+|.|++||+|. .|+
T Consensus         6 ~~pC~ngg~C~~~~~~y~C~C~~g~~G~-~Ce   36 (40)
T d1g1sa2           6 DMSCSKQGECLETIGNYTCSCYPGFYGP-ECE   36 (40)
T ss_dssp             TTGGGGSEEEEECSSSEEEEECTTEEST-TSC
T ss_pred             CCcCCCCcEEECCCCCeEEeCCCCccCC-CCC
Confidence            445554 5676   35999999999997 664

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0011  Score=38.38  Aligned_cols=17  Identities=29%  Similarity=0.628  Sum_probs=13.3

Q ss_pred             CCccCCCCCCCCCCCcc
Q psy10880        116 GDRKCLPGWSGDYCTKA  132 (166)
Q Consensus       116 G~c~C~~GwtG~~C~~~  132 (166)
                      ..|+|++||+|.+|++.
T Consensus        21 y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1          21 YTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CCEECCTTEETTTTCEE
T ss_pred             EEEECCCCCCcCcCeEc
Confidence            34489999999999764

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.001  Score=38.39  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=27.2

Q ss_pred             cccccccceeeeceeEEEecCCCCCCCCCCC
Q psy10880         68 TEDEHKSAHSSMLYEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        68 ~~~~~~~~~~~l~~~~r~~C~~gyyG~~C~~   98 (166)
                      ++..+.|..+.....|+|.|.++|.|..|+.
T Consensus         7 ~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           7 TSCSGHGECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             TGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CcCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence            3567788899999999999999999999975

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=95.42  E-value=0.0012  Score=38.64  Aligned_cols=26  Identities=12%  Similarity=0.048  Sum_probs=16.0

Q ss_pred             CCCCC-CccC----CCCceeCCC-CCccCCCCC
Q psy10880        139 TKALP-NRTS----RTLFCVLEP-SMQLYGNCA  165 (166)
Q Consensus       139 ~~c~n-G~C~----~~~~C~C~~-G~~G~~~~~  165 (166)
                      .+|+| |.|.    ..|+|.|++ ||+|. .|+
T Consensus         8 nPC~ngG~C~~~~~~~y~C~C~~~G~~G~-~Ce   39 (42)
T d1q4ga2           8 YPCQHQGICVRFGLDRYQCDCTRTGYSGP-NCT   39 (42)
T ss_dssp             CCCCTTCEEEEETTTEEEEECTTSSEETT-TTC
T ss_pred             CCCCCCCEeeeCCCCCEEEECCCCCcCCc-CcC
Confidence            45554 5664    136788865 78877 554

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0097  Score=34.37  Aligned_cols=16  Identities=25%  Similarity=0.698  Sum_probs=11.7

Q ss_pred             ccCCCCCCCCCCCccc
Q psy10880        118 RKCLPGWSGDYCTKAV  133 (166)
Q Consensus       118 c~C~~GwtG~~C~~~i  133 (166)
                      |+|++||+|.+|++.+
T Consensus        23 C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1          23 CQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             EECCTTCBSSSCCBCS
T ss_pred             ECCCCCCCCCCcCcCc
Confidence            3788888888887654

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.0066  Score=36.63  Aligned_cols=22  Identities=41%  Similarity=0.841  Sum_probs=18.7

Q ss_pred             ccCCC-CCCccCCCCCCCCCCCc
Q psy10880        110 YTCSH-TGDRKCLPGWSGDYCTK  131 (166)
Q Consensus       110 y~C~~-~G~c~C~~GwtG~~C~~  131 (166)
                      ..|++ +|+|.|.++++|..|++
T Consensus        13 ~~Cd~~tGqC~Ck~~v~G~~Cd~   35 (51)
T d1kloa3          13 SSCNPVTGQCQCLPHVSGRDCGT   35 (51)
T ss_dssp             CCCCTTTCCCCBCTTEESTTCCE
T ss_pred             CccCCCCCeecCCCCCcCCCccc
Confidence            35775 79999999999999975

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.0036  Score=36.34  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=17.3

Q ss_pred             CCCCCC-CccCC----CCceeCC-CCCccCCCCC
Q psy10880        138 PTKALP-NRTSR----TLFCVLE-PSMQLYGNCA  165 (166)
Q Consensus       138 c~~c~n-G~C~~----~~~C~C~-~G~~G~~~~~  165 (166)
                      ..+|+| |.|..    .|+|.|+ +||+|. .|+
T Consensus         6 ~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~-~Ce   38 (41)
T d1cvua2           6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGE-NCT   38 (41)
T ss_dssp             TCCCCTTCEEEEEETTEEEEECTTSSEETT-TTC
T ss_pred             CCCCCCCCEEEECCCCCEEEeCcCCCcCCc-CcC
Confidence            345555 56742    3788886 588887 665

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.016  Score=35.23  Aligned_cols=16  Identities=13%  Similarity=0.156  Sum_probs=10.4

Q ss_pred             CCceeCCCCCccCCCCC
Q psy10880        149 TLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       149 ~~~C~C~~G~~G~~~~~  165 (166)
                      .++|.|++||+|. .|+
T Consensus        28 ~~~C~C~~gy~G~-~Ce   43 (53)
T d3egfa_          28 SYTCNCVIGYSGD-RCQ   43 (53)
T ss_dssp             CEEEECCTTCCSS-SSC
T ss_pred             CeEeECCCCCcCC-CCc
Confidence            3677777777776 554

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.0067  Score=35.75  Aligned_cols=25  Identities=40%  Similarity=0.833  Sum_probs=20.6

Q ss_pred             CCCcccCCCCCCccCC-CCCCCCCCCc
Q psy10880        106 SFGHYTCSHTGDRKCL-PGWSGDYCTK  131 (166)
Q Consensus       106 ~~ghy~C~~~G~c~C~-~GwtG~~C~~  131 (166)
                      ..||++| .-|+|+|. +||+|++|++
T Consensus        13 Cng~G~C-~cG~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          13 CSGRGKC-ECGSCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGTEEE-ETTEEEECCSSCBSTTSCB
T ss_pred             ECCCCEE-ECCEeEeCCCCccCCcccc
Confidence            3468888 57999995 8999999985

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.011  Score=34.78  Aligned_cols=29  Identities=10%  Similarity=0.070  Sum_probs=19.7

Q ss_pred             cCCCCCCCCCCccCC---CCceeCCCCCccCC
Q psy10880        134 QKLSPTKALPNRTSR---TLFCVLEPSMQLYG  162 (166)
Q Consensus       134 C~~~c~~c~nG~C~~---~~~C~C~~G~~G~~  162 (166)
                      |......|.++.|.+   .|+|.|++||++..
T Consensus         6 C~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             TTTCSSTTTTSCEEEETTEEEECCCSSEEECT
T ss_pred             cCCCCCCCCCCEeEcCCCCeEEeCCCCCccCC
Confidence            333444455567763   59999999998864

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=93.06  E-value=0.026  Score=32.62  Aligned_cols=13  Identities=46%  Similarity=1.002  Sum_probs=7.4

Q ss_pred             cCCC-CCCCCCCCc
Q psy10880        119 KCLP-GWSGDYCTK  131 (166)
Q Consensus       119 ~C~~-GwtG~~C~~  131 (166)
                      .|.+ ||+|.+|++
T Consensus        27 ~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2          27 DCTRTGYSGPNCTI   40 (42)
T ss_dssp             ECTTSSEETTTTCE
T ss_pred             ECCCCCcCCcCcCc
Confidence            5654 566666654

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.016  Score=36.17  Aligned_cols=17  Identities=47%  Similarity=0.960  Sum_probs=14.9

Q ss_pred             CccCCCCCCCCCCCccc
Q psy10880        117 DRKCLPGWSGDYCTKAV  133 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~i  133 (166)
                      .|+|++||+|.+|+..+
T Consensus        33 ~C~C~~gy~G~~Ce~~~   49 (63)
T d1haea_          33 LCKCQPGFTGARCTENV   49 (63)
T ss_dssp             EEECCTTEESTTSCEEC
T ss_pred             EeECCCCCCCCCcCCCC
Confidence            45999999999999866

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.74  E-value=0.031  Score=32.14  Aligned_cols=13  Identities=38%  Similarity=1.053  Sum_probs=7.2

Q ss_pred             cCC-CCCCCCCCCc
Q psy10880        119 KCL-PGWSGDYCTK  131 (166)
Q Consensus       119 ~C~-~GwtG~~C~~  131 (166)
                      .|. +||+|.+|++
T Consensus        26 ~C~~~gy~G~~Ce~   39 (41)
T d1cvua2          26 DCTRTGFYGENCTT   39 (41)
T ss_dssp             ECTTSSEETTTTCE
T ss_pred             eCcCCCcCCcCcCc
Confidence            553 4566665554

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.85  E-value=0.064  Score=32.35  Aligned_cols=14  Identities=43%  Similarity=1.068  Sum_probs=9.9

Q ss_pred             cCCCCCCCCCCCcc
Q psy10880        119 KCLPGWSGDYCTKA  132 (166)
Q Consensus       119 ~C~~GwtG~~C~~~  132 (166)
                      +|++||+|.+|+..
T Consensus        32 ~C~~gy~G~~Ce~~   45 (53)
T d3egfa_          32 NCVIGYSGDRCQTR   45 (53)
T ss_dssp             ECCTTCCSSSSCCC
T ss_pred             ECCCCCcCCCCccC
Confidence            77777777777653

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.019  Score=34.17  Aligned_cols=15  Identities=13%  Similarity=0.104  Sum_probs=9.9

Q ss_pred             CceeCCCCCccCCCCC
Q psy10880        150 LFCVLEPSMQLYGNCA  165 (166)
Q Consensus       150 ~~C~C~~G~~G~~~~~  165 (166)
                      +.|.|++||+|. .|+
T Consensus        27 ~~C~C~~gy~G~-~Ce   41 (48)
T d1nqlb_          27 YACNCVVGYIGE-RCQ   41 (48)
T ss_dssp             EEEEECTTEEST-TSC
T ss_pred             eEEeCCCCcccC-CCC
Confidence            677777777766 543

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.021  Score=32.98  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=18.3

Q ss_pred             CCCCCCCCccCC---CCceeCCCCCccCC
Q psy10880        137 SPTKALPNRTSR---TLFCVLEPSMQLYG  162 (166)
Q Consensus       137 ~c~~c~nG~C~~---~~~C~C~~G~~G~~  162 (166)
                      .+..|.++.|.+   .|+|.|++||+...
T Consensus         8 ~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2           8 DPLLCRGGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             CSSTTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CCCCCCCCEeECCCCCeEEeCCCCCeECc
Confidence            344455667763   59999999998553

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.055  Score=32.02  Aligned_cols=13  Identities=31%  Similarity=0.976  Sum_probs=7.7

Q ss_pred             cCCCCCCCCCCCc
Q psy10880        119 KCLPGWSGDYCTK  131 (166)
Q Consensus       119 ~C~~GwtG~~C~~  131 (166)
                      +|++||+|.+|+.
T Consensus        30 ~C~~gy~G~~Ce~   42 (48)
T d1nqlb_          30 NCVVGYIGERCQY   42 (48)
T ss_dssp             EECTTEESTTSCE
T ss_pred             eCCCCcccCCCCc
Confidence            5666666666654

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.038  Score=32.63  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             CCCCCCccC-----CCCceeCCCCCccCCCCC
Q psy10880        139 TKALPNRTS-----RTLFCVLEPSMQLYGNCA  165 (166)
Q Consensus       139 ~~c~nG~C~-----~~~~C~C~~G~~G~~~~~  165 (166)
                      ..|.||.|.     ..+.|.|++||+|. .|+
T Consensus        12 ~yC~nG~C~~~~~~~~~~C~C~~gY~G~-RCe   42 (46)
T d1k36a_          12 GYCLHGQCIYLVDMSQNYCRCEVGYTGV-RCE   42 (46)
T ss_dssp             SSCSSEEEEEETTTTEEEEEECTTCSST-TSC
T ss_pred             CcCcCCEEEEeCCCCccEeECCCCceec-Cce
Confidence            345566663     23789999999887 554

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.085  Score=30.43  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=15.6

Q ss_pred             CCccC---CCCceeCCCCCccCCC
Q psy10880        143 PNRTS---RTLFCVLEPSMQLYGN  163 (166)
Q Consensus       143 nG~C~---~~~~C~C~~G~~G~~~  163 (166)
                      ++.|.   ..|.|.|++||++.|.
T Consensus        16 ~~~C~Nt~Gsy~C~C~~Gy~~~g~   39 (43)
T d1emoa1          16 HGQCINTDGSYRCECPFGYILAGN   39 (43)
T ss_dssp             SSCCCCCSSCCCCCCCTTEEESSS
T ss_pred             CCEeECCCCCeEeECCCCcccCCC
Confidence            34565   3599999999987764

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=0.034  Score=31.89  Aligned_cols=16  Identities=13%  Similarity=0.171  Sum_probs=13.8

Q ss_pred             CCCceeCCCCCccCCC
Q psy10880        148 RTLFCVLEPSMQLYGN  163 (166)
Q Consensus       148 ~~~~C~C~~G~~G~~~  163 (166)
                      ..|.|.|++||+|.|.
T Consensus        20 Gsy~C~C~~Gy~GdG~   35 (40)
T d1gl4a2          20 TGFCCRCVANYTGNGR   35 (40)
T ss_dssp             SCEEEEECTTEEECSS
T ss_pred             CCeEeECCCCCcCCCC
Confidence            3599999999999985

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.07  Score=33.08  Aligned_cols=30  Identities=17%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             cccccceeee-----ceeEEEecCCCCCCCCCCCC
Q psy10880         70 DEHKSAHSSM-----LYEYRVTCDPHYYGNGCATL   99 (166)
Q Consensus        70 ~~~~~~~~~l-----~~~~r~~C~~gyyG~~C~~~   99 (166)
                      ..+.|.+..+     ...|.|+|+++|.|..|++.
T Consensus        14 C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~   48 (63)
T d1haea_          14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN   48 (63)
T ss_dssp             SCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEE
T ss_pred             CCCCCEEeecccccCCCCEEeECCCCCCCCCcCCC
Confidence            4556666433     35799999999999999873

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.12  Score=30.29  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             cceeee--ceeEEEecCCCCCCCCCCC
Q psy10880         74 SAHSSM--LYEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        74 ~~~~~l--~~~~r~~C~~gyyG~~C~~   98 (166)
                      |....+  ...++|.|+++|+|..|+.
T Consensus        17 G~C~~~~~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          17 GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CEEEEeCCCCccEeECCCCceecCcee
Confidence            444333  3578999999999999975

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.11  Score=29.46  Aligned_cols=12  Identities=8%  Similarity=0.085  Sum_probs=10.1

Q ss_pred             CceeCCCCCccC
Q psy10880        150 LFCVLEPSMQLY  161 (166)
Q Consensus       150 ~~C~C~~G~~G~  161 (166)
                      .+|.||.+|+|.
T Consensus        20 ~rC~CPk~f~G~   31 (40)
T d2i9aa1          20 HWCNCPKKFGGQ   31 (40)
T ss_dssp             EEEECCTTEEST
T ss_pred             EEecCCcccCce
Confidence            588999988886

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.44  E-value=0.16  Score=28.90  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=16.9

Q ss_pred             cceeeeceeEEEecCCCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYYGNG   95 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyyG~~   95 (166)
                      ...+....+|+|+|.+||+|.+
T Consensus        13 A~C~Nt~Gsy~C~C~~Gy~GdG   34 (40)
T d1gl4a2          13 AECRDYATGFCCRCVANYTGNG   34 (40)
T ss_dssp             EEEEECSSCEEEEECTTEEECS
T ss_pred             CEeecCCCCeEeECCCCCcCCC
Confidence            4566777888899999988764

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.065  Score=30.90  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=15.8

Q ss_pred             CCCCccC---CCCceeCCCCCccCC
Q psy10880        141 ALPNRTS---RTLFCVLEPSMQLYG  162 (166)
Q Consensus       141 c~nG~C~---~~~~C~C~~G~~G~~  162 (166)
                      |.++.|.   ..|+|.|++||+...
T Consensus        13 c~~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2          13 CQGGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             GBTSEEEECSSCEEEECCTTCCBCT
T ss_pred             cCCCEEECCCCCeEeECCCCCeECc
Confidence            3345675   359999999998653

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.11  Score=30.04  Aligned_cols=26  Identities=31%  Similarity=0.882  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCCCCCCcccCCCCCCccCCCCCC
Q psy10880         92 YGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWS  125 (166)
Q Consensus        92 yG~~C~~~C~p~~~~~ghy~C~~~G~c~C~~Gwt  125 (166)
                      +|..|+..|+|..  .++|+|      +|.+||.
T Consensus         8 f~~~CE~qCqP~~--~~~Y~C------iCaeGFa   33 (43)
T d1dx5i1           8 FRANCEYQCQPLD--QTSYLC------VCAEGFA   33 (43)
T ss_dssp             GGCCCSSEEEECS--SSCEEE------ECCTTEE
T ss_pred             cCCCcceeeeeCC--CCcceE------Eeccccc
Confidence            5788888888853  357777      8998885

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.26  Score=29.16  Aligned_cols=18  Identities=22%  Similarity=0.534  Sum_probs=15.9

Q ss_pred             eeEEEecCCCCCCCCCCC
Q psy10880         81 YEYRVTCDPHYYGNGCAT   98 (166)
Q Consensus        81 ~~~r~~C~~gyyG~~C~~   98 (166)
                      ..++|.|+++|+|..|+.
T Consensus        27 ~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          27 DKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             TEEEEEECTTEESTTSCE
T ss_pred             CCcEeECCCCCEecCCcc
Confidence            477899999999999975

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.21  Score=29.71  Aligned_cols=16  Identities=25%  Similarity=0.650  Sum_probs=12.7

Q ss_pred             CccCCCCCCCCCCCcc
Q psy10880        117 DRKCLPGWSGDYCTKA  132 (166)
Q Consensus       117 ~c~C~~GwtG~~C~~~  132 (166)
                      .|+|++||+|..|+..
T Consensus        31 ~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_          31 SCVCDEGYIGARCERV   46 (50)
T ss_dssp             EECCCTTEETTTTCEE
T ss_pred             EeECCCCCeeCCCccc
Confidence            4589999999988754

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=0.23  Score=28.41  Aligned_cols=15  Identities=33%  Similarity=0.910  Sum_probs=12.3

Q ss_pred             CCccCCCCCCCCCCC
Q psy10880        116 GDRKCLPGWSGDYCT  130 (166)
Q Consensus       116 G~c~C~~GwtG~~C~  130 (166)
                      -.|+|.+||+|..|+
T Consensus        24 ~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_          24 PSCICHPGYHGERCH   38 (41)
T ss_dssp             CCEEECTTEESTTCC
T ss_pred             ceeECCCCCeecCcc
Confidence            467899999998886

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=0.82  Score=25.77  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=16.1

Q ss_pred             cceeeeceeEEEecCCCCCC
Q psy10880         74 SAHSSMLYEYRVTCDPHYYG   93 (166)
Q Consensus        74 ~~~~~l~~~~r~~C~~gyyG   93 (166)
                      +..+.+..+|+|.|++||+.
T Consensus        15 ~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2          15 GVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             SEEEEETTEEEEESCTTSCC
T ss_pred             CEeECCCCCeEEeCCCCCeE
Confidence            46788888888999888874